oEPA
           United States       Office of Air Quality
           Environmental Protection  Planning and Standards
           Agency         Durham, North Carolina
                       27711
                         EPA-453/B-94/030
                         April 1994
The EPA Great Waters
Program:
An Introduction to the Issues and
the Ecosystems

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ntroducti'on
            w ver the past 30 years, scientists have collected a large and convinc-
            ing body of evidence demonstrating that toxic pollutants released to
            the air can be deposited at locations far from their original sources.
            Chemicals of human origin such as polychlorinated biphenyls (PCBs)
            and pesticides like DDT have been found thousands of miles from
            likely emission sources in the. fatty tissues of polar bears and other
            Arctic animals. Fish from Siskiwit Lake, a small lake on an island in
            northern Lake Superior that is isolated from most human influences,
            are contaminated with PCBs and the pesticide toxaphene, which have
            no known sources on the island.
               On November 15, 1990, in response to mounting evidence that air
            pollution contributes to water pollution, Congress amended the Clean
            Air Act and included provisions that established research and report-
            ing requirements related to the deposition of hazardous air pollutants
            to the "Great .Waters." The waterbbdies designated by these provi-
            sions are the Great Lakes, Lake Champlain, and Chesapeake Bay  and
            certain other coastal waters (identified by their designation as sites in
            the National Estuarine Research Reserve System or the National Estu-
            ary Program).             •      ..
               This  atlas is written to provide basic information about the Great
            Waters, their water quality.-problems, and the issue of atmospheric dep-
            osition to aquatic ecosystems in general. For more  detail, the Great
            Waters biennial Reports to Congress discuss current scientific under-
            standing of atmospheric deposition and the health and  environmental
            effects of toxic pollution, as well as EPA's programs to protect human
            health and the environment.

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I
he   Great  Waters   Program
                                          ITs part of the Great Waters Program, Con.
                                          gress requires EPA, in cooperation with th«
                                          National Oceanic and Atmospheric Admin-
                                          istration, to
                                          m monitor hazardous pollutants by estab-
                                            lishing sampling networks
                                          m investigate the deposition of these pollut-
                                            ants
                                          m improve monitoring methods
                                          • monitor for these hazardous pollutants
                                            in fish and wildlife
                                          a determine the contribution of air 'pol-
                                            lution to total pollution in the Great
                                            Waters
                                          m evaluate any adverse effects to public
                                            health and the environment
                                          • determine sources of pollution
                                          • provide a report to Congress in 1993
                                            and every 2 years thereafter.
                                                                Chesapeake Bay
                                               Lake Superior
                                                               Lake
                                                    Lake Huron  Champl
                                                          Lake

                                              La "~   "™"
                                              Mic
     Great Waters designated by Clean
      Air Act
     EPA National Estuary Program Sites
     NOAA NEEHS Sites'"
     EPA and NOAA NERRS Sites
     "NOAA - National Oceanic and Atmospheric Administration'
     NERHS • National Estuarine Research Reserve System
                                                                  VI

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                             Pollutants are released into the air from man-made or natural
                             sources. Man-made sources include industrial stacks, munici-
                             pal incinerators, pesticide applications, and vehicle exhaust.
                             Natural sources can be volcanic eruptions, windblown gases
                             and particles from forest fires, windblown dust and soil parti-
                             cles, and sea spray.         ,          .  •               :
                             Pollutants released to the air are carried by continental wind
                             patterns away from their areas of origin. Depending.on weathr-
                             er  conditions and.the .chemical and physical properties of the,
                             pollutants, they can be carried varying distances from their
                             sources and can undergo physical, and chemical changes as
                             they travel.             ..  .  '  •    .'  :.              •       .:
                             Air pollutants are deposited tb the earth or directly to water-
                             bodies by either wet .or "dry deposition. Wet deposition occurs;:
                             when pollutants are removed from the,air by  falling rain orV
                             snow. Dry deposition occurs when particles settle out of the''
                             air by gravity or when gases are transferred directly from the'
                             air into water. Air pollutants that deposit  on land can be car7
                             ried into a waterbody by stormwater runoff.             :
S
u
1
                                                            "' Air Masses
      Gases and
     ..- Ffatieulafe
W"-^ Matter
                                                 '--.'... Dry., .•>-,; r
                                             'M '••' Pa^'9le A,"" Air/Water. Gas
                                            "If DteFf^tioi] i- r. Exchange'

                                                                  '! • .•:,t-i.'-f/,^~)'f..

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    The Clean Air Act requires the estab-
 lishment of monitoring networks to col-
 lect data to help identify and track move-
 ment of air pollutants into Great Waters
 ecosystems and determine overall pollu-
 tion loadings from the air.
    EPA must report the findings of the
 investigations in  their biennial reports tc
 Congress. These reports provide an infor-
 mation base that can be used to
 m establish whether air pollution is a sig-
   nificant contributor to water quality prob-
   lems of the Great Waters
 B determine whether there are significanl
   adverse effects  to humans or the envi-
   ronment
   evaluate the effectiveness of existing
   regulatory programs in addressing these
   problems
 m determine whether additional regula-
   tory actions are needed to reduce atmos-
   pheric deposition to the Great Waters.
4

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              H
              ihere is widespread evidence in the United States, Canada, and
             Europe of high concentrations of mercury, a toxic metal, in fish
             tissue that exceed local,, national, or international public health
             guidelines. This contamination represents  a serious human
             health concern as well as a significant economic threat to both
             the commercial and sportfishing industries.
                Currently 27 states have consumption advisories for specific
             waterbodies warning consumers about mercury-contaminated
             fish and shellfish (see map).  Many of these advisories, particular-
             ly in  Minnesota, Wisconsin,  and Florida, have been issued for
             relatively pristine waterbodies where atmospheric deposition is
             thought to be the main source of the mercury contamination.
                Mercury comes from natural and man-made sources. Natural
             sources of atmospheric mercury include degassing, of the earth's
             crust  and forest fires. Major man-made sources of atmospheric
             mercury include combustion of coal and other fossil fuels, incin-
             eration of municipal refuse, and evaporation from surfaces paint-
             ed with mercury-containing paints.
    American Samoa
    Guam
o
D1-5
H6-20
D21-50
H 50-500
O Puerto Rico
    •& Virgin Islands

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I
he Great  Lakes
 The Great Lakes-
 Superior, Michigan,
 Huron, Erie, and
 Ontario-are the largest
 system of fresh surface
 water on earth, by area.
 They contain approxi-
 mately 18 percent of the
 world's fresh water
 supply. Together the
 lakes contain about
 5,500 cubic miles of
 water covering a total
 area of 94,000 square
 miles. These vast inland
 freshwater seas (which
 span more than 750
 miles from east to west)
 provide water for con-
 sumption, transporta-
 tion, power production,
 recreation, and an array
 of other uses. The Great
 Lakes basin is currently
 home to one-tenth of the
population of the United
 States and one-quarter of
 the population of
 Canada.
1
Physical Features

Length (mi)
Width (mi)
Average depth (ft)
Maximum depth (ft)
Volume (mi3)
Surface area (mi2)
Land drainage area (mi2)
Shoreline (mi)
Retention time (yr)
Population
United States (1990)
Canada (1991)
Fish Advisories
PCBs
Dioxins
Chlordane
Mercury

Superior
350
160
483
1,330
2,900
31,700
49,300
2,726
173

425,528
181,493

@

%
•
s^p^'-v^ T. »
'gfew?^


Michigai
307
118
279
923
1,180
22,300
45,600
1,638
62

10,057,02


®

@
®

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                    'ork
Huron
Erie
"Ontario
206
183
195
750
850
23,000
51,700
3,827
21
1,502,687
191,017
241
57
62
210
116
9,910
30,140
871
2.7
10,017,530
1,857,961
193
53
283
802
393
7,340
24,720 .
712
7.5
2,704,284
5,446,611
   Despite their large size, the Great Lakes
 are sensitive to the effects of a broad range
 of environmental pollutants from agricul-
 tural and urban runoff, industrial and
 municipal facilities, spills, and hazardous
 waste sites. The large surface area of the
 lakes also  makes them vulnerable to
 direct atmospheric pollutants  that fall
 with snow or rain (wet deposition) and as
 dust particles (dry deposition) on the lake
 surface or within the extensive land drain-
 age system.
   Although part of a single freshwater
 system,  each lake has different physical
 characteristics that influence pollutant
 impacts (see table at left). la volume, Lake
 Superior is the largest  and also the deepest
 and coldest of the five lakes. Because most
 of Lake Superior's drainage basin is forest-
 ed, supports  little agriculture, and is sparse-
 ly populated, it is believed that relatively
 few pollutants enter the lake except
 through airborne transport.
   Lake Michigan is the second largest of
 the lakes and is  the only one  that lies
 entirely within the borders of the United
 States. The drainage area is sparsely popu-
 lated in  the north except for the Green
 Bay area. Green Bay has one of the most
 productive  fisheries in the Great Lakes
 region but receives wastes from a large
 number of pulp and paper facilities. The
 southern shoreline of Lake Michigan is
 among the most heavily urbanized of all
 the lakes; this region, which includes Mil-
 waukee and  Chicago, is home to 8 million
people.
   Huron is  the third  largest lake by vol-
ume. The northern shore surrounding the
 Georgian Bay is a recreational area for
both Canadian .and U.S. citizens.  The Sag-
inaw River basin is farmed intensively and

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 contains the metropolitan areas of Flint
 and Saginaw Bay. Like Green Bay, Saginaw
 Bay contains a highly productive fishery.
   Lake Erie is the smallest of the lakes by
 volume and yet is the most significantly
 stressed from both urbanization  and agri-
 culture. The lake receives agricultural run-
 off from southwest Ontario and portions
 of Ohio, Michigan, and Indiana. Seventeen
 urban areas, each with a population of
 more than 50,000, are within the drainage
 basin.
   Although slightly smaller in area thari
 Erie, Lake Ontario is much deeper. Major
 Canadian urban industrial areas include
 Toronto and Hamilton; however, the U.S.
 shoreline is  less urbanized and not inten-
 sively farmed except in the area  adjacent
 to the lake shore.
   Development in the Great Lakes region
has taken advantage of the many resources
within the watershed:
• Agriculture—Grain, dairy and meats,
  and specialty  crops such as fruits, vege-
  tables, and tobacco are produced.
I Urbanization and industrial growth —
 The major industries in the Great Lakes
 basin produce steel, paper, chemicals,
 automobiles, and a wide array of manu-
 factured goods. Urbanization, accompa-
 nied by industrial growth, brought an
 increase in the number of municipal
 water and sewage treatment facilities
 and industrial plants that discharge their
 effluents into the Lakes.
i Shipping and transportation—Commod-
 ities, primarily iron ore, coal, and grain,
 are shipped via an extensive navigational
 system that extends through the  St.
 Lawrence Seaway to the Atlantic Ocean.
I Commercial fishery—Only pockets  re-
 main of a once large commercial fishery
 for lake trout, lake whitefish, coho and
 chinook salmon,  and walleye. In the U.S.
 waters, the commercial fishery is based
 primarily on lake whitefish, smelt, and
 perch and on the alewife for animal feed.
 Sport fishery—Today walleye, splake,
 and coho, chinook, and pink salmon pre-
 dominate the sport catch; however, with
 few exceptions, none of these predator
 species has been able to reproduce and
 the fishery has had to be restocked year
                 after year.
               • Recreation—The econ-
                 omy of many areas in
                 the Great Lakes basin
                 depends  heavily on
                 tourism and revenues
                 from local recreation-
                 al activities, including
                 sport outfitters,  ma-
                 rinas, boatbuilders, re-
                 sorts, and restaurants.

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         Water Quality Issues

           By the late 1960s, the most obvious
         problems affecting the Great Lakes were
         inputs of nutrients and oxygen-demanding
         materials, largely from direct piped dis-
         charges from municipal  wastewater treat-
         ment plants and industries. In particular/
         excess phosphorus led to algal blooms near
         the shorelines that interfered with recre-
         ational uses and caused taste and odor
         problems in drinking water. As mats of
         dead algae settled into bottom waters, oxy-
         gen levels plummeted, causing fish kills.
         Lake Erie was the most vulnerable to these
         problems due to its shallow depth, warm
         temperatures, and many wastewater dis-
         charges.  To  a lesser extent, Lake Ontario
         and natural embayments such as Green .
         Bay and  Saginaw Bay experienced similar
         problems.
           Impacts from conventional water pollu-
         tion were added to decades of cumulative
         effects from overharvesting of fisheries,,
         the introduction of exotic species, -dredging
         operations in harbors and shipping chan-
         nels, and habitat alterations in shorelines
         and wetlands due to agricultural, urban,
g
I
e
and industrial development. The harm
from conventional pollutants was also
made more severe by the widespread use of
chemicals such as DDT that accumulate in
fish tissues and magnify up the food chain.
   By the late 1970s, major investments in
upgrading wastewater treatment facilities
and the promotion of  improved  con-
servation practices in agriculture led to sig-
nificant progress in controlling conven-
tional waterborne pollutants. However,
toxics levels in sediments and fish tissue
are still a major issue today. The amounts
of mercury and some  pesticides  in fish
flesh have often reached levels serious
enough for public health authorities to
issue warnings about eating certain sizes
and species of fish. In some instances, long-
term exposure raises health  concerns over
cancer. Ongoing research suggests that
there are other types of risks, ranging from
birth defects to harmful physiological
impacts to children. Similar toxicity con-
cerns are also an issue  for many types of
wildlife.
   Concerns over these toxics have encour-
aged a comprehensive approach to man-
agement initiatives in the  Great Lakes.
         This approach starts with the
	   realization that the natural envi-
         ronment cannot be viewed apart
         from the institutional ecology of
         human beings and  their econom-
         ic systems. While many manage-
         ment initiatives can best be im-
         plemented by focusing on sub-
         systems such as particular Great
         Lakes or Areas of Concern, these
         geographically targeted activities
         must always take into account
         the fact that  the  entire Great
         Lakes basin is interconnected.
         Such a comprehensive perspec-
         tive  also requires an understand-
         ing of the movement of pollut-
         ants through air, surface water,
         sediment, and ground water.

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 Major Pollution Control
 Initiatives
   In recent years, several major environ-
 mental laws have been amended to con-
 tain features relevant to Great Waters or
 specifically to the Great Lakes basin. The
 1990 Clean Air Act contains provisions re-
 lated to water and land ecosystem impacts
 from the deposition of air pollutants, with
 particular emphasis on toxics. Under the
 Superfund and Resource Conservation and
 Recovery Act (RCRA) programs, the Toxics
 Release Inventory improves the knowl-
 edge base for life-cycle tracking of wastes
 from industrial processes and encourages
 recycling and pollution prevention efforts.
 Ecological risk assessments of the threats
posed by waste disposal facilities are be-
 coming more sophisticated, and progress
under the Assessment and Remediation of
Contaminated Sediments (ARCS) program
holds  promise  of reducing pollution
 impacts from toxic sediment. Cooperative
 efforts with other federal agencies such as
 the U.S.  Department of Agriculture, the
 National Oceanic and Atmospheric Ad-
 ministration, the Pish and Wildlife Ser-
 vice, and the Corps of Engineers address
 issues as diverse as appropriate disposal of
 dredge materials, maintaining biodiversi-
 ty, and protecting habitats for threatened
 or endangered wildlife species.
   Perhaps  the most ambitious pollution
 control initiatives seek'to implement pro-
 visions of  the  1978  U.S.-Canada Water
 Quality Agreement, Through a combi-
 nation of treaty arrangements, federal and
 state laws, enhancements to existing regu-
 lations, and consensus-based  approaches
 involving stakeholders from governments,
 industry groups, and environmental organi-
 zations, problems are tackled at several
geographic  levels. Site-specific Remedial
Action Plans (RAPs)  are nearing comple-
tion for Areas of Concern, usually at river
           mouths or harbors where on-
           going pollutant loads, com-
           bined with cumulative effects
           dating to the period before
           1970, have created the most
           severe challenges for remedi-
           ating toxic sediment prob-
           lems.
                                                  The Great Lakes "Airshed7
                                                  Bands indicate the approximate
                                                  number of days required for air-
                                                  borne contaminants to be trans-
                                                  ported to the Great Lakes basin.
                                        10

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                      ake Superior is the largest of the Great Lakes, containing
                    more than 50 percent of the total Great Lakes water volume. It
                    takes nearly 200 years to completely replace the water in Lake
                    Superior. Pollutants that become tied up in the bottom sedi-
                    ments clearly remain in the system for long periods of time
                    unless they are decomposed, physically buried in deeper sedi-
                    ments, otherwise transformed, or evaporated to the atmosphere.
                    Many toxics are picked up in food chains where they may accu-
                    mulate in body tissues and magnify up the food chain, posing a
                    potential health threat to humans and wildlif e that consume sig-
                    nificant  amounts of fish.
                      Progress in reducing the inputs of such persistent toxics as
                    PCBs from direct piped discharges has rendered waterborne
                    inputs a relatively minor component of the mass balance picture
                    in Lake  Superior. But PCBs in the  atmosphere, released from
                    local sources  or from sources that  may be hundreds of miles
                    away, may also be deposited to the lake. In addition, there is an
                    enormous reservoir of PCBs from "old" pollution contained in
                    the sediments. While this in-place supply is slowly being buried
                    under cleaner silt layers, a large amount becomes resuspended in
                    the water due to the actions of bottom-feeding fish and bottom-
                    dwelling organisms, turbulence from large cargo vessels, dredg-
                    ing activities, and the effects of severe storms. Resuspended
                    PCBs may then evaporate and return to the atmosphere.
                      Atmospheric
                      Deposition
                      ~167kg/yr
Volatilization
~600-4,200 kg/yr
 River Inflow
  20-50
Numbers presented are approximations.
                                       11

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   At larger regional levels, each lake is
scheduled for the development of a Lake-
wide Management Plan. Special issues
facing each lake will be stressed.  For in-
stance,  coordinated steps to reduce on-
going pollutant loadings will be a central
focus of the plans for Lake Michigan or
Lake Ontario. For Lake Superior,  the larg-
est and  most nearly pristine of the Great
Lakes, pollution prevention and the goal of
virtual elimination of persistent toxic load-
ings will be a central theme.
    To ensure that appropriate criteria are
 in place for planning and management
 activities, proposed Great Lakes Water
 Quality Guidance contains uniform water
 quality criteria for toxics in the Great
 Lakes basin.  These criteria can then be
 incorporated into state water quality stan-
 dards to guide the National Pollutant Dis-
 charge Elimination System permitting
 process (for point source or piped water
 discharges) and other programs. EPA and
. the states will seek to achieve water quali-
 ty standards by the most efficient means-
 by reducing releases from point sources,
 from nonpoint or diffuse sources, from
 atmospheric sources, and from contami-
 nated sediments, spills, and waste sites, as
 appropriate. An effort is currently under
 way to address nonpoint sources releasing
 toxics in the basin, with an emphasis on
 bioaccumulative chemicals identified in
 the Great Lakes Water Quality Guidance.
                                        12

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       Bald Eagle
                                      Humans
    I he nutrients necessary for plant growth (e.gv nitrogen.and phosphorus) are found
at very low concentrations in most surface waters.  In the process of collecting these
nutrients, phytoplankton also accumulate certain synthetic chemicals, such as PCBs
and pesticides. These may be present in the water at concentrations so low they can-
not be measured even by very sensitive instruments. The chemicals, however, biologi-
cally accumulate (bioaccumulatej in the organism and become concentrated at levels
that are much higher than in the surrounding water.          '
   Small fish and zooplankton consume vast quantities of phytoplankton. In doing so,
any toxic chemicals accumulated by the phytoplankton are further concentrated in
their bodies. These concentrations are increased at each level in the food chain. This
process of increasing pollutant concentration through the food chain is called biomag-
nification.
   The top predators in a food chain, such as lake trout, coho and chinook salmon, and
fish-eating gulls, herons, and bald eagles, may accumulate concentrations of a toxic
chemical high enough to cause serious deformities or death or to impair their ability to
reproduce. The concentration of some chemicals in the fatty tissues of top predators .
can be millions of times higher than the concentration in the surrounding water.
                                                     Eggs  of fish-eating birds'
                                                   often contain some  of the
                                                  highest concentrations of tox-
                                                  ic chemicals. Thus, the first
                                                  apparent effects  of a 'toxic
                                                   chemical in a lake may. be
                                                  unhatched  eggs or dead  or
                                                  malformed chicks. Scientists
                                                  monitor  colonies of gulls and
                                                  other aquatic birds because
                                                  these effects can serve as early
                                                  warning signs of a growing
                                                  toxic chemical problem.
                                                     Biomagnification of pollut-
                                                  ants in the food chain is also a
                                                  significant concern for human
                                                  health. To protect their resi-
                                                  dents from these risks, all the
                                                  Great Lakes states have issued
                                                  fish consumption advisories
                                                  or warnings about eating cer-
                                                  tain types of fish.
                                        ankton
                            Dead Plants and
                            Animals

                                       13
 Cormorant
Lake Trout
Coho Salmon
Bacteria and Fungi
 Chinook Salmon
        Sculpin
  Bottom-Feeders

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L
ake  Champ  ain
Lake Champlain
is the sixth largest
inland waterbody
in the United
States, surpassed
only by the Great
Lakes, hi the
Lake Champlain
Special Desig-
nation Act of
1990, Congress
recognized its
national
significance.
                 Fish Advisories
                 State jurisdiction
                                 Pollutant
Fish species
Vermont
New York
Mercury
PCBs
Mercury
PCBs
Walleye
Lake trout >25"
Walleye >19"
Lake trout >25"
Walleye >19"
Lake trout >25"
Brown bullhead
American eel
                               14

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take Champlain covers an area of 435
square miles (excluding the areas of more
than 50 islands) within an 8,234-square-
mile drainage basin/ 56 percent of which
lies in Vermont, 37 percent in New York,
and 7 percent in Quebec. Lake Champlain's
physical characteristics vary markedly
moving from south to north; the entire
waterbody is commonly divided into five
distinct regions:
fl South Lake is shallow with riverine char-
  acteristics. It shows infestations of exotic
  Eurasian milfoil and water chestnuts,
  creating marshlike conditions.
• Broad Lake is relatively narrow, but con-
  tains deep water up to 400 feet.
m Malletts Bay lies to the southeast of
  Grand Isle near Burlington, Vermont,
  and displays a pattern of restricted circu-
  lation.
m The Inland Sea (also called the Northeast
  Arm) lies in the  area around St. Albans,
  Vermont, and contains numerous small
  islands.
m Missisquoi Bay extends from the delta of
  the Missisquoi River north into the
  province of Quebec. Like the South Lake,
  it is shallow with luxuriant growths of
  water plants accentuating its marshlike
  qualities.
   Lake Champlain has an extremely
diverse sports fishery, with as wide an
assortment of freshwater fish as any lake
in the northern United States. There are
sizable populations of over 90 species of
game and nongame fishes.
   Sport fishing  during  the warmer
months goes hand in hand with boating
and other recreational uses. During win-
ter, Lake Champlain offers a very popular
ice fishery, especially for yellow perch.
   Much of the area surrounding Missis-
quoi Bay lies within the Missisquoi Wild-
life Refuge  and offers habitat for many
types of waterfowl. The  Lake Champlain
Valley is part of the North Atlantic Fly-
way,  a migratory bird corridor. Between
20,000 and 40,000 birds have been counted
during fall migration. Hunting and other
types of recreation are a significant boon
to the regional economy.
   In addition to its uses for sports fishing,
hunting, and recreation,  Lake Champlain
is the major source of drinking water for
nearly 200,000 people in over 20 towns
and cities in Vermont,  New York, and
Quebec. With canals offering links to both
the Saint  Lawrence and  the Hudson
Rivers, towns such as Burlington support
active commercial harbor facilities. The
population  of the basin exceeds 600,000.
The area around Ticonderoga, New York,
has supported various types of industrial
activity and still supports a large pulp and
paper mill.  Smaller areas of industrial ac-
tivity are found in Vermont. There are
seven direct industrial discharges to the
lake and 66 sewage treatment plants serv-
ing the human populations of the larger
communities. . .  .
                                         15

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 Water Quality Issues

    Prior to congressional action in 1990,
 there was no coordinated management for
 this impressively large natural "lake." Spe-
 cial funding for Lake Champlain was pro-
 vided under the 1987 Clean Water Act re-
 authorization to encourage study of this
 waterbody. Patterned after the main fea-
 tures of a Clean Water Act National Estu-
 ary Program project/ the Lake Champlain
 Basin Program is moving rapidly to develop
 a comprehensive conservation and man-
 agement plan. This will include participa-
 tion from the States of New York and Ver-
 mont and involvement with the Canadian
 government and the Province of Quebec.

16

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   Toxics are of concern in the lake. Al-
 though Lake Champlain has not been stud-
 ied as extensively as the near-shore areas of
 the Great Lakes, elevated levels of certain
 toxic substances  have been found near
 urbanized areas such as Burlington, Ver-
 mont, and Plattsburgh and Ticonderoga,
 New York. There are also 34 hazardous
 waste sites and 95 landfills in the basin.
 The table on page 14 lists fish consump-
 tion advisories  issued for  this lake. The
 Lake Champlain Basin Program will assist
 in expanding the range of toxic pollutants
 analyzed in fish tissue, as well as support-
 ing other studies to sample lake sediments
 for heavy metals, PCBs, arsenic, and other
 substances  of concern. Deposition of air
 pollutants will also be monitored to deter-
 mine if PCBs and mercury are entering the
 lake ecosystem from the air.
17

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 c
hesapeake Bay
 Chesapeake Bay, the
 largest estuarme
 system in the
 contiguous United
 States, has a water-
 shed ofahnost 64,000
 square miles. The
 total surface area of
 the Bay is 3,830
 square miles. Of
 these, 153 square
 miles are tidal fresh
 waters, 3,562 square
 miles constitute the
 mixing zone, and 115
 square miles are salt
 waters. This unique
 ecosystem also con-
 tarns more than 1,500
 square miles of wet-
 lands that provide
 critical habitat for
fish, shellfish, and
 wildlife; filter and
process residential,
agricultural, and
industrial wastes;
and buffer coastal
areas agonist storm
and wave damage.
                      West
                      Virginia
               Patuxent Riv
                 x
                  •N
                   i
                    \
          Gunpowder k
                               usquehanna Rive
                         Potomac River
                         Back RJve
                       Rappahannock River
                     York River
                     James Rive
                   Fish Advisories within the Shaded Area
                                 	     PCBs    Dioxin
                   West Virginia
                 Potomac River
Virginia
                                    Jackson River
                                    James River
                   Maryland
                 Back River
                 Baltimore Harbor
                   District of Columbia Anacostia River    ©
                                    Potomac River     ©
                                  18

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 Northeast River
 Sassafras River


IC^iester River

     ^hoptank River


        ware

         ;oke River
      yma
Chlordane   Kepone
                                 Whesapeake Bay's watershed stretches from New York
                                 State to Virginia and encompasses one-sixth of the Eastern
                                 Seaboard. The Bay accounts for almost half the fresh water
                                 entering estuaries in the Middle Atlantic Region. Five
                                 major  tributary systems—the Potomac, Susquehanna,
                                 Rappahannock, York/ and James Rivers—as well as dozens
                                 of smaller rivers supply fresh water to Chesapeake Bay.
                                 This freshwater inflow (85,800 cubic feet per second) signif-
                                 icantly affects estuarine circulation and combines with
                                 tides to create complex circulation patterns that contribute
                                 to Chesapeake Bay's vitality.
                                    Atlantic Coastal Plain estuaries such as the Chesapeake
                                 Bay are characteristically shallow and are subject to strong
                                 tidal circulation, creating ideal conditions for biological
                                 productivity. About 25  percent of all approved shellfish
                                 waters for oysters and clams in the United States are found
                                 in Chesapeake Bay.
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   In 1991 over 150 million pounds of fish
 and shellfish were harvested from this
 highly productive system.
   The Chesapeake Bay estuarine system
 is not only a major fishing area but also
 provides essential nursery areas for a wide
 variety of commercial and sport fish
 species. The Bay provides year-round habi- •
 tat for white perch, bay anchovy, and sev-
 eral catfish species, including the channel
 catfish and white catfish, and attracts
 marine predators  such as bluefish and
 Atlantic croaker. The Bay also serves as a
 nursery for early life stages of migratory
 species,  such as Atlantic menhaden,
American shad, American eel, weakfish,
spotted sea trout, and striped bass.
 Water Quality Issues

    In 1975, Chesapeake Bay became the
 Nation's first estuary to be targeted for pro-
 tection and restoration  when  Con-
 gress directed EPA's Office of Research and
 Development to initiate a study investi-
 gating the causes of the environmental
 declines observed in the Bay. The Clean
 Water Act Amendments of 1987 required
 the EPA Administrator to continue the
 ongoing Chesapeake Bay Program and
 maintain a Chesapeake Bay Program Of-
 fice. This Program continues to collect and
 make available information about the
 Bay's environmental quality, to coordinate
 federal and state efforts to improve the
 Bay, and to determine the impact of natur-
 al and man-made environmental changes
 in the Bay, especially from sediment depo-
 sition, nutrients, chlorine, acid precipita-
 tion, low dissolved oxygen, and toxic
 pollutants.
   Studies completed in the 1970s docu-
 mented that increases in agricultural
 development, population growth, and sew-
 age treatment plant discharges were caus-
 ing the Bay to become nutrient enriched.
 Nitrogen and phosphorus are the two pri-
 mary nutrients required to sustain aquatic
 biological productivity. Although phospho-
 rus is the limiting nutrient in most fresh-
 water systems, nitrogen is the limiting
 nutrient in most coastal estuarine and
 marine waters. As a result of elevated in-
puts,  however, these nutrients are often
present at concentrations in excess of basic
nutrient requirements, causing excessive
growth of phytoplankton and algae. This
condition has two effects:
• In shallow areas, the excess  algae block
  the sunlight that important submerged
  aquatic grasses need to grow. This de-
  grades the habitat and  causes the even-
  tual loss of these grass beds.
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• In deeper areas, the decomposition, of
  dead algae uses up available oxygen in
  the water. During the warm summer
  months, oxygen in the bottom waters
  can only be replenished slowly because
  little mixing with the high-oxygen sur-
  face water occurs. Many bottom-dwel-
  ling organisms such as oysters, clams,
  and worms, which provide food for fish
  and crabs, cannot survive this prolonged
  period of low oxygen.
   Nutrients in the Chesapeake Bay orig-
inate from point sources (e.g., municipal
and  industrial wastewater), nonpoint
sources (e.g., cropland, ariimal wastes,
urban and suburban runoff), and airborne
contaminants, including inputs from
states within the Bay watershed that are
not signatories to  the Chesapeake Bay
Agreement (New York, West Virginia, and
Delaware).
 Water Quality Trends and
 Characterization
   Bay water quality monitoring data con-
 firm the significant progress made in re-
 ducing phosphorus from nonpoint sources
 and municipal point sources but indicate
 that further progress is needed toward
. reducing nitrogen loadings.
   The  Bay Program's highest priority is
 to restore the Bay's living resources. One
 way to do this is to improve water quality
 through nutrient reductions. These reduc-
 tions will increase dissolved oxygen, im-
 prove water clarity, and enhance conditions
 conducive to the growth of submerged
 aquatic vegetation that provides critical
 habitat for many of the Bay's organisms.
                                       21

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 Point Source Nutrient
 Reduction
    Municipal wastewater treatment plant
 discharges contribute the majority of point
 source loadings. Three elements of the
 Chesapeake Bay Program's point source
 control strategy are responsible for reduc-
 tions in the nutrient loading:
 • pollution prevention actions such as pro-
   hibiting the sale of detergents contain-
   ing phosphorus
 • upgrading wastewater treatment plants
 • improving compliance with permit re-
   quirements.
    Because the majority of municipal treat-
 ment plants discharge into fresh wa-
 ters where phosphorus is the limiting nu-
 trient, nitrogen concentrations received lit-
 tle attention until recent years. New tech-
 nologies such as biological nutrient remov-
 al are being developed to increase removal
 of nitrogen from wastewaters, and these
 are being added to some existing treatment
 facilities.  Upgrading of wastewater treat-
 ment plants has strengthened controls for
 nitrogen as well as for phosphorus.

 Nonpoint  Source Nutrient
 Reduction
   Nonpoint  sources of nutrients contrib-
 ute about 60 percent of  the nitrogen  that
 reaches the Bay.  The largest  single source
 is agricultural runoff. Nitrogen loading re-
 sults from application of chemical  fertiliz-
 ers/ livestock manure/ and sewage sludge
 on  fields as well as from animal  wastes
 that run off pastures and feedlots. Other
 nitrogen  sources include atmospheric
 deposition to tidal surface waters/ adjacent
 ocean waters, and the watershed/ as well
 as runoff from urban and suburban lawns,
 roadways, and other developed areas to
 creeks and tributary rivers.  The Chesa-
peake Bay Program's nonpoint source con-
trol program emphasizes reductions of
 controllable nonpoint sources including
 agriculture, paved surfaces, and construc-
 tion in urban areas. The most important
 additional control measure is the practice
 of nutrient management in which animal
 wastes and fertilizers are applied to farm-
 land in amounts carefully calculated to
 meet the needs of -the crops. This practice
 reduces the runoff and leaching of nutri-
 ents that result from overuse of fertilizers.

 Atmospheric Nitrogen
 Reduction
    In addition  to  point and  nonpoint
 sources of nitrogen loadings to Chesapeake
 Bay, concern is  growing over the atmos-
 pheric deposition of nitrogen to the Bay.
 Atmospheric nitrogen is largely produced
 from the burning of fossil fuels; its two
 largest sources are automobiles and fossil
 fuel electric generating plants throughout
 the Chesapeake Bay airshed, which ex-
 tends well beyond the watershed. Com-
 puter models indicate that about 10 per-
 cent of the Bay's nitrogen load is the. result
 of airborne nitrogen, deposited directly on
 the surface of the Bay and the tidal por-
 tions of its tributaries. When the amount
 of atmospheric nitrogen deposited through-
 out the 64,000-square-mile watershed is
 considered, air pollution could account for
 nearly 40  percent of the Bay's total nitro-
 gen load.  The exact nitrogen load added
 from air pollution sources is uncertain
 because of the lack of monitoring data and
 questions about how and where nitrogen is
 transported. The EPA is developing a mod-
 el that will provide  a more definitive idea
 about air pollution sources that impact the
 Bay.
   Reductions in atmospheric deposition
 are difficult to achieve because the sources
 of the pollutants, stationary and mobile,
 are not easily controlled and may be gener-
 ated within the Chesapeake Bay region or
 transported a.considerable distance to the
Bay. To obtain the greatest reductions, the
Bay states  are considering enacting air pol-
lution controls more stringent than those
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specifically mandated by the Clean Air
Act Amendments, particularly for car
emissions. The Governors of Maryland,
Virginia, and Pennsylvania recently took a
first step in that direction by endorsing a
plan to require California-style emissions
standards for cars sold after 1995.

Toxics Problem
   In recent years, increased attention has
been paid to the role that toxics may play
in the problems facing Chesapeake Bay.
Through a recent reevaluation of a 1989
basinwide toxic reduction strategy, the Bay
Program has determined that toxics prob-
lems exist in some locations in the Bay. A
few well-known areas have serious,  local-
ized problems, and some other regions that
were previously thought to be uncontam-
inated have shown toxic effects. No  evi-
dence was  found of severe, system-wide
responses to toxics similar in magnitude to
the effects observed throughout the  Bay
due to excessive nutrients. Widespread
areas have measurable levels of toxic sub-
stances, below thresholds associated with
adverse effects on the Bay's living re-
sources. The long-term effects from these
low levels remain unclear. Through efforts
to develop a basinwide toxics loading and
release inventory, estimates of direct
atmospheric deposition to tidal surface
waters have been made using data from a
sampling network set up in 1990. Atmos-
pheric deposition was found to be a signifi-
cant source of metals,  organics, and pesti-
cides loadings to the  Bay's tidal waters,
although  not the major source. Recent
research and assessments of sediment con-
taminant patterns in Chesapeake Bay indi-
cate that atmospheric deposition may be
the major source of sediment contamina-
tion, particularly of polynuclear aromatic
hydrocarbons resulting from incomplete
combustion of fossil fuels.
                                        23

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s
isters  to  the  Chesapeake
Recognizing that estuaries are unique and
endangered ecosystems that are an impor-
tant natural and economic resource,
Congress established the National
Estuarme Research Reserve System
(NERRS) in 1972 under Section 315 of the
Coastal Zone Management Act and the
National Estuary Program (NEP)in 1987
under Section 320 of the Clean Water Act.
                                            Legend
                                            National Estuary Program sites
                                            National Estuarine Research Res
                                         West Coast
                                         Padilla Bay, WA
                                         Puget Sound, WA
                                         Tillamook Bay, OR.
                                         South Sloiigh; OR
                                         San Francisco Bay, CA
                                         Elkhorn Slough, CA
                                         Santa Monica Bay, CA
                                         Tijuana River, CA
                                         Waimanu Valley, HI

                                         Fish Advisories
                                         Estuarine Ecosystem
                                                             PC
                                         Chesapeake Bay
                                         Narragansett Bay
                                         Long Island Sound
                                         New York/New Jersey Harbor
                                         Delaware Bay
                                         Albemarle Sound
                                         Galveston Bay
                                         San Francisco Bay
                                 24

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Systems sites
        Gulf Coast
        Rookery Bay, FL
        Sarasota Bay, FL
        Tampa Bay, FL
        Apalachicola Bay, FL
        Weeks Bay, AL
        Baratarria-Terrebonne
          Estuarine Complex, LA
        Galveston Bay, TX
        Corpus Christ! Bay, TX
                     New England
                     Casco Bay, ME
                     Weils, ME
                     Great Bay, NH
                     Massachusetts Bay, MA
                     Buzzards Bay, MA
                     Waquoit Bay, MA
                     Narragansett Bay
                       (NEP and NERRS)


                     Middle Atlantic
                     Long Island Sound, NY/CT
                     Peconic Bay, NY
                     Hudson River, NY
                     New York/New Jersey Harbor
                     Old Woman Creek, OH
                     Delaware Estuary, DE/NJ/PA
                       (NEP and NERRS)
                     Delaware Inland Bays, DE
                     Chesapeake Bay, MD
                       (3 reserves)
                     Chesapeake Bay, VA
Southeastern Atlantic
Albemarle-Pamlico Sound, NC
North Carolina Coastal sites (4 reserves)
North Inlet/Winjah Bay, SC   '
Ashepoo-Combahee-Edisto Basin, SC
Sapelo Island, GA
Indian River Lagoon, FL
San Juan Bay, PR
Jbbos Bay, PR
         Dioxin      Chlordane   Kepone     Mercury  Cadmium
                                           25

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NERRS  SITES

   The National Estuarine Research Re-
serve System (NERRS), administered by
the Office of Ocean and Coastal Resource
Management, National Oceanic and At-
mospheric Administration (NOAA), is a
state-federal  partnership under the Coastal
Zone Management Act. The Act requires
nomination  of a reserve site by the gover-
nor of a state and designation by the Secre-
tary of Commerce.
   Each Reserve is a carefully selected
estuarine area of the United States that is
designated,  preserved,  and managed for
research and educational purposes. The Re-
serves are chosen to reflect regional differ-
ences and a wide  variety of ecosystem
types. Each site is uniquely suited to sup-
porting a wide range of beneficial uses (eco-
logical, economic, recreational, and aes-
thetic) that are dependent on maintenance
of a healthy  ecosystem.  Each site provides
critical habitat for a wide range of ecologi-
cally and commercially important species
of fish, shellfish, birds, and other wildlife.
As part of a national system, the Reserves
collectively provide a unique opportunity
to address research questions and estuar-
ine management issues of national signif-
icance.
  Reserves have been designated at the
rate of approximately one per year since
1974 and now protect more than 400,000
acres of estuarine lands, wetlands, and
waters. As of August 1993, 22 Reserves
had been designated (see map on page 24).
Some of these sites are home to a number
of endangered or threatened species
including the American alligator, Atlantic
loggerhead turtle, and bald eagle (Ashepoo-
Combahee-Edisto Basin,  South Carolina);
others serve as critical stopover areas for
migratory birds (Elkhorn Slough, Califor-
nia, and  Chesapeake Bay, Maryland) or
serve as important  bird nesting areas
(Narragansett Bay, Rhode Island, and
Rookery Bay, Florida). While  some sites
                                        26

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 are almost completely isolated from the
 effects of human activities (Waimau
 Valley, Hawaii, and Wells, Maine), others
 are stressed because of their proximity to
 large urban areas (Narragansett Bay, Rhode
 Island, and Hudson River, New York). The
 diversity of the Reserves is representative
 of the heterogeneity of the U.S.  coastal
 zone. Over 550,000 acres are  planned for
 protection in the reserve system by 1995.
   The primary goal of the NERRS nation-
 al research program is to support high-
 quality studies that significantly con-
 tribute to our understanding of the func-
 tional ecology of the various  ecosystems
 encompassed by the coastal zone of the
 United States. The 10-year primary re-
 search objective is  to study natural and
 anthropogenic changes in the ecology of
 the Reserves.  A major research priority is
 the study of nonpoint source pollution
 (such as agricultural or stormwater run-
 off),  and atmospheric deposition and the
 resulting  alterations within these eco-
 systems.
   As part of this national program, long-
 term monitoring activities will be  initiat-
 ed for the  systematic collection of biologi-
 cal and physicochemical data from the
Reserves to form the basis of a national
network for tracking the status and trends
of our coastal ecosystems.
National Estuary Program
   As in the NERRS Program, the governor
of a state must nominate an estuary within
that state for participation in the National
Estuary Program. The state must demon-
strate a likelihood of success in protecting
the candidate estuary and provide evidence
of institutional,  financial, and political
commitment to solving estuarine prob-
lems.
   If an estuary meets the NEP guidelines,
the EPA Administrator convenes a man-
agement conference of representatives
from interested federal,  regional, state, and
local governments; affected industries; sci-
entific and academic institutions; and citi-
zen organizations. The management con-
ference defines program goals  and objec-
tives, identifies problems, and designs strat-
egies to prevent and control pollution and
manage natural resources in the estuarine
basin. Each management conference devel-
ops and initiates implementation of a Com-
prehensive Conservation and Management
Plan to restore and protect its estuary.
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   The purpose of the National Estuary
 Program is to identify nationally signifi-
 cant estuaries, protect and improve their
 water quality, and enhance their living
 resources. The NEP currently supports 22
 estuary projects, including 4 sites add-
 ed to the program in 1992. The NEP sites
 represent a wide spectrum of environmen-
 tal conditions in estuaries throughout the
 United States and  its Territories. Habitat
 types include mangrove swamps and coral
 reefs in tropical estuaries, eelgrass beds
 and  shallow  mudflats of  Gulf and
 Southeast Atlantic Coast estuaries, and
 cold water estuarine habitats of the Pacific
 Coast and North Atlantic Coast estuaries.
 These estuaries are significant in their eco-
 nomic values as well as in their ability to
 support unique living resources.
   Although each of these 22 estuaries is
 ecologically unique  and  is stressed by a
 unique combination of  environmental
 problems, almost  all of  them have one
 problem in common—development.
 Explosive population growth has fueled a
 corresponding increase in  commercial, res-
 idential, and industrial development,
 which in turn engenders increasing dis-
 charges of nutrients,  toxic chemicals, and
 pathogens to estuarine waters. Many of
 these pollutants are generated by both
 point sources and nonpoint sources of pol-
 lution. Point sources of pollutants- include
 industrial and municipal discharges and
 combined  sewer overflows. Nonpoint
 sources include agriculture, atmospheric
 deposition, in-place sediments, landfill
leaching,  septic system leaching, and
urban and construction runoff.
   Problems currently being addressed by
the NEP Management Conference include
• Eutrophication—Loading of excessive
  amounts of nutrients (e.g., nitrates and
  phosphates) can stimulate rapid growth
  and reproduction  of algae and bacteria.
• Toxic pollutants—Loading of metals,
  pesticides, PCBs, polynuclear aromatic
  hydrocarbons, and dioxins can pose a
  risk to aquatic organisms and to con-
  sumers of fish or shellfish.
• Pathogens—Disease-causing microor-
  ganisms pose a health risk to swimmers
  through direct body contact or to the
  general population through consumption
  of contaminated shellfish.
• Living resources and their habitat —
  Overfishing and the loss or modification
  of habitat as a result of land develop-
  ment, bulkheading, and dredge and fill
  operations can lead to changes in species
  composition and a decrease in species
  diversity and abundance of living re-
  sources.

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This report was prepared by the EPA
Office of Air Quality Planning and
Standards with technical support from
Research Triangle Institute.
        Printed on Recycled Paper

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