NORTHERN GREAT PLAINS
     AQUATIC ASSESSMENT
            November 1998
      U.S. EPA Main library
      Mail Code C267-01
      109 TW. Alexander Drfw
      Research "Wangle Park, NC 27711
Prepared by the U.S. Environmental Protection Agency,U.S. Forest Service, U.S.
Geological Survey and U.S. Natural Resources Conservation Service

Primary Author - Thomas R. Johnson, USEPA

Working Group Members - Robert Sprentall, USFS; Allen Heakin, USGS-WRD;
Joyce Williamson, USGS-WRD; Walt Duffy, USGS-BRD; Roy Boschee, NRCS

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Table of Contents
Executive Summary
Chapter 1 Aquatic Assessment Introduction
Chapter 2 Status of Aquatic Resources                                         21
Chapters Wetlands and Riparian Habitat                                       113
Chapter 4 Water Laws and Restoration Programs                                141
Chapters Impacts of Human Activities                                         159
Chapters Water Use                                                       207
Evaluaton of Assessment, Data Gaps and Future Work                            237
List of Figures                                                            239
List of Tables                                                             243
References
                                                                        244

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Executive Summary
   This assessment of the aquatic resources
of the Northern Great Plains covers the area
from central Montana to the Red River Valley of
North Dakota and from the Canadian border to
Sandhills of Nebraska. Portions of five states
are within the assessment area, Montana,
Nebraska, North Dakota, South Dakota and
Wyoming.  The condition and extent of aquatic
resources  such as streams, rivers, lakes,
groundwater and wetlands were examined.

   Measures  of the status and condition of
these resources include information regarding
quality  and  use  of  both  surface  and
groundwater and the status of aquatic species,
both in an overall biodiversity and community
sense and in particular the status of species of
special concern. In addition, the condition of
riparian areas and the condition and extent of
wetland'areas are also examined. Linked with
information on the status  and  condition of
aquatic resources  is a discussion  of the
impacts of human activities to these resources,
such as hydrologic modifications and pollution.

   Five general questions  were proposed at
the outset of the  investigation  which  were
designed to determine the status and impacts
to the various resources. These questions are
presented herewith major findings under each.
The text of the report contains many more.

Question 1 (Chapter 2): What is known about
the current status and apparent trends in water
quality, aquatic habitat and aquatic species in
the Northern Great Plains Assessment Area?

•There are 180 eight-digit hydrologic unit codes
(watersheds) in  the Northern  Great Plains
Assessment Area.
•Precipitation is highest in the southeastern
portions of the NGPAA (eastern South Dakota
and eastern Nebraska) at more than 20 inches.
It is  lowest  in northeastern Wyoming and
eastern Montana with less than  T5 inches.
•The major aquifer systems located in the
NGPAA include unconsolidated  alluvial and
glacial deposit aquifers, the High Plains aquifer
system, the Northern Great  Plains aquifer
system and Great Plains aquifer system.
•The hydrograph of the Missouri  River has
changed from having two  prominent  flood
peaks each year to a long steady flow covering
most of the year.
•Most  of  the watersheds  in the  NGPAA
experience mean flows of less than 1000 cfs.
A  few watersheds in the  Yellowstone and
Missouri River mainstems have mean flows of
greater than 10,000 cfs.  Much of the NGPAA
experience wide variabilities in flow from year
to year.
•Reservoir area is  greatest  in watersheds
connected with the Missouri River, reflecting
the existence of  larger reservoirs such  as
Oahe, Sakakawea and Fort Peck.
•The watersheds with the highest percentages
of  assessed  miles  of  streams  partially
supporting and not supporting uses include
large sections of the NGPAA, particularly in the
Red River basin, the tributaries to the Missouri
in South Dakota, the Milk and other Missouri
tributaries in Montana and the Platte basin in
Nebraska.
•The watersheds with the lowest percentages
of assessed  miles  of  streams  partially
supporting and not supporting uses are the
James Headwaters,  the Little Missouri and
parts of the Missouri River in North Dakota.
•The High Plains Aquifer generally has very
good water quality in terms of dissolved solids.
•The greatest number of pesticide detections in
 ground water have  occurred  in Holt and
Wheeler counties in Nebraska; Potter County in
 South Dakota; Rolette County in North Dakota
 and Teton County in Montana.
 •There are 18 TE&SC aquatic species within
 the Northern Great Plains Assessment Area.
 Of these, 7 are fish and 11  are mollusks.
 •There  are no  aquatic  species  listed as
 threatened. There are 3 endangered species,
 1 fish (pallid sturgeon) and 2 mollusks (winged
 mapleleaf and fat pocketbook).  An additional

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Executive Summsry
species is proposed to be listed as endangered
(tcpeka shiner).
•There are 3 candidate species, all of which are
fish (sturgeon chub, sicklefin chub, and topeka
shiner).
•There are 12 species which are of special
concern  that  are  not  listed as endangered,
threatened or candidates (global rank of G3 or
lower).
•There is 1 bird species listed as endangered
(least tem) and 1 listed as threatened (piping
plover). These are listed as a result of changes
in the hydrology of the Missouri River.
•The watersheds with the greatest number of
endangered and special concern fish  species
are the Lower James, the Upper James and the
Lewis and Clark Lake stretch of the Missouri
River.

Question 2 (Chapter 3):  What is the extent
and composition of riparian and wetland areas?
What  are  the  land coverages   in  the
Assessment Area?

•Eastern   Montana  has the  most  riverine
wetlands according to the NRCS. Central and
eastern North Dakota, northeastern Wyoming
and much of South  Dakota  have the least
amounts  of riverine wetlands.
•The greatest decreases in riverine wetlands
during the period 1982 to 1992 have occurred
in northeast  Wyoming and central South
Dakota. The greatest increases have occurred
in the Black Hills and Sand Hills.
•The greatest concentration of wetlands in the
NGPAA occur in the Prairie Pothole region of
ND, SD and MT.
•73% of historical wetland acres remain in
Montana; 55% in North Dakota; 65% in South
Dakota; 65%  in Nebraska; and about 60% in
Wyoming.
•Most wetland losses have been the result of
conversions for agriculture.
•The greatest  losses since presettlement by
percentage have  occurred in North  Dakota,
with the most extensive drainage occurring in
the Red River Valley.
•Wetland losses  in the last ten years  have
been reduced to less than 3% per year in most
parts of the NGPAA. However, in many parts
of the NGPAA, increases in wetland acreage
are being noted.
•Recent changes (since 1980s) have  seen
wetland losses  the  Little  Missouri basin,
western North  and South Dakota, the Red
River Valley, the  lower Yellowstone, Niobrara
and Cheyenne Rivers.   Recent gains  have
been recorded in  the Milk, Upper Yellowstone,
Powder, Belle Fourche, Loup, Platte, James
and Sheyenne River basins.
•The Sand Hills and northeastern North Dakota
contain  the largest amounts of  palustrine
wetlands and  the least amounts occur in
western and central South Dakota.
•Increases  by   percentage  in   palustrine
wetlands from 1982 to 1992 occurred in the
western and eastern portions of the NGPAA.
Decreases   have occurred  in  much of the
central NGPAA,  with  the largest in western
North Dakota.

Question 3 (Chapter 4): What laws, policies
and  programs for the protection  of water
quality,  streams,  wetlands and riparian areas
are in place, and how do they affect aquatic
resources, other  resources and human uses
within the Northern Great Plains Assessment
Area?

•The Clean Water Act, the Safe Drinking Water
Act and the Endangered Species Act are the
three major  pieces  of federal  legislation
available to protect aquatic resources.
•Numerous grant and restoration programs are
available  from   various  federal  and  state
agencies for the  protection and restoration of
aquatic systems.

Question 4 (Chapter 5):  What are the current
and potential effects on aquatic resources from
various  human activities?
•Human population in the NGPAA is mainly

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                                                 Northern Great P/a/ns Aquatic Assessment
centered around a number of cities (Billings,
Fargo, Bismarck, Rapid City,  Casper, etc).
Much of the area has a low population density.
•Human population growth is occurring fastest
in  counties with the  larger cities,  the area
surrounding the Black Hills, southern Montana,
northeastern Wyoming  and in a number of
Indian Reservations.
•Watersheds  with the  greatest  number of
stream miles impacted from dams, diversions
and wetland drainage are the Upper and Lower
Tongue, the Lower Powder, the Sun River, the
Upper Missouri-Dearborn, the Lower Bighorn,
the Lower Souris, Upper Sheyenne, Pembina,
Middle  Sheyenne,   Upper  James,  Lower
Sheyenne, Maple River and the Western Wild
Rice River.
•Watersheds  with the  greatest  amount of
irrigated  acreage   are   the  Milk,  Teton,
Yellowstone, Platte, North Platte, Lower Loup,
Niobrara,  ElkhoYn,   Belle  Fourche,  Upper
Tongue and Lewis and Clark Lake.  Relatively
little irrigated cropland occurs throughout much
of North Dakota/South Dakota, the Sand Hills
and outside of major river valleys in eastern
Montana and northeastern Wyoming.
•Watersheds with the greatest total number of
NPDES dischargers (major and minor) are
Lewis and Clark Lake, Upper Elkhom, Middle
Platte-Buffalo, Middle  North  Platte  River-
Scottsbluff, Lake Sakakawea, Little Powder
River,   Beaver  Creek  (Cheyenne  River
watershed), Lance Creek, Salt Creek (Powder
River watershed) and the  Middle North Platte
River-Casper.
•Agricultural activities in general impact the
ability of assessed streams to meet designated
uses across large areas of the NGPAA.
•Watersheds  with the  greatest number of
assessed stream miles impacted by nutrients
are the Upper Powder, Lower Yellowstone-
Sunday, Middle Milk, Cedar Creek (in North
Dakota), Lower Souris, Upper James, Western
Wild  Rice  River,  Maple  River  and  Lower
Sheyenne.
•Watersheds  with the  greatest number of
assessed stream miles impacted by siltation
are the Western Wild  Rice River, the Lower
Sheyenne, Cedar Creek, Lower Heart, Upper
Powder, Clarks Fork of the Yellowstone, Upper
Missouri-Dearborn and  the Smith River.
•Watersheds  with the greatest  number  of
assessed stream miles impacted by irrigated
crop production are  mainly  in Montana and
Wyoming.
•The Universal Soil Loss Equation predicts the
greatest potential for erosion in the NGPAA to
be  in parts of western North  Dakota and
southeastern South Dakota.
•The greatest  concentration  of  total animal
units are in parts of Nebraska (due to cattle and
hogs).   The lowest  concentrations  are in a
swath   from  northeastern' Montana   to
northeastern North Dakota.
•The largest areas of harvested cropland are in
eastern and central North Dakota, northeastern
South  Dakota,  along   the  Platte  River  in
Nebraska and northern Montana.  The lowest
amounts  are   in  northeastern  Wyoming,
southeastern  Montana and  western South
Dakota.
•Pesticide runoff potential is greatest in the Red
River Valley, the lower  James, lower Missouri,
lower Loup and Middle  Platte  River basins.
The lowest is  in  western  South  Dakota,
northeastern Wyoming  and most of Montana.
•The greatest  amounts  of nitrogen  fertilizer
used are in eastern and northern North Dakota,
the  Platte River Valley and  north-central
Montana.  The lowest amounts used are in
western  South  Dakota  and   northeastern
Wyoming. Nitrogen runoff potential is greatest
in the Platte Valley, eastern South Dakota and
southeastern North  Dakota.   It is  lowest in
northeastern Wyoming and scattered areas of
Montana.
•Sediment delivery potential is greatest in parts
of the Red  River Valley, Elm  River (James
basin), Lewis and Clark Lake watershed and
the Two Medicine River and the Teton River in
the  Upper Missouri basin.    It is  lowest in
northeastern  Wyoming, the  Sand  Hills and

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Executive Summary

southeastern and eastern Montana.

Question 5 (Chapter 6): What are the status
and  apparent trends  in water usage  and
supplies within the Northern  Great Plains
Assessment Area including water rights and
uses on National Forest System Lands?
•The greatest total water use in the NGPAA is
in the Platte  Valley of Nebraska and  the
Missouri River near around Bismarck. Surface
water use is greatest  in the Missouri  near
Bismarck, in the Yellowstone, Platte and Milk
River basins.  Ground water use is greatest in
the Platte, Niobrara, Loup and Elkhom basins.
Watersheds which use more than 25 million
gallons  per   day  of   ground water   are
predominantly restricted to Nebraska.
•Overall, irrigation is the greatest single type of
use for water in the NGPAA. The greatest total
use (surface and ground) for irrigation is in the
Yellowstone, Platte, Milk, Niobrara, Lower Loup
and Elkhom basins.
•The greatest uses for thermoelectric use are in
the Missouri  River  near Bismarck and  the
Lower South Platte.
•Water  use  for  agriculture  (irrigation  and
livestock) declined during the period 1985 to
1995 in much of South Dakota, North Dakota,
northern Nebraska and eastern Montana, with
the greatest decreases seen in the Lower Belle
Fourche and the Middle Niobrara watersheds.
The greatest increases were seen in parts of
the Platte,  Loup,  Powder, Tongue, Upper
Yellowstone and Marias River basins.
•Total water use changes during the period
1985 to 1995 closely  match the changes in
agricultural water use.

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Aquatic Assessment Introduction
1.1 INTRODUCTION

   This assessment of the aquatic resources
of the Northern Great Plains outlines the status
of water quality and quantity for both surface
water and  ground water,  aquatic habitats
(streams,  rivers, lakes, wetlands and riparian
areas) and the aquatic species that use these
habitats.   It also  describes the  impacts  of
human activities  on  water  quality, water
quantity and aquatic habitats and organisms,
as well as  programs and projects being
undertaken to  protect  and  restore these
resources. The report examined patterns, and
where enough data were available, assesses
future trends.   Five questions were posed
regarding the aquatic resources of the Northern
Great Plains that this assessment addresses.
The five questions are listed below, along with
the corresponding chapter. •

a. What is known about the current status and
   apparent trends in water quality, aquatic
   habitat and aquatic  species within the
   Northern Great Plains planning area?
   (Chapter 2)  -

b  What is the extent of riparian and wetland
   areas and composition? (Chapter 3)

c  What laws, policies and programs for the
   protection  of   water  quality,  streams,
   wetlands and riparian areas are in place,
   and how do they affect aquatic resources,
   other resources and human uses within the
   Northern Great Plains Assessment Area?
   (Chapter 4)

d. What are the current and potential effects
   on aquatic resources from various human
   activities? (Chapter 5)

e. What are the status and apparent trends in
   water  usage  and supplies  within the
    Northern Great Plains Assessment Area?
    (Chapter 6)

    This assessment is a broadscale effort to
establish current  aquatic conditions  in the
Northern Great Plains. It will also be used in
the preparation of finer-scale assessments to
be  performed at the landscape level.  The
landscape scale assessment focusses on the
individual National Grassland Units that are
contained within the larger Northern Great
Plains Assessment Area.

1.2 DESCRIPTION OF THE ASSESSMENT
AREA

    The Great Plains cover 600 million acres
spanning from Saskatchewan and Alberta to
•the southwestern  United States and Mexico
and from the foothills of the Rocky Mountains
east to Illinois  (Ostlie, et al.  1996).  This
assessment covers the northern portion of the
Great Plains, approximately 250 million acres,
of which only about four million acres are within
the National Grassland  system.   The  vast
majority  of  land in  this area  is in  private
ownership.   The  area  included  in  this
assessment is shown in Figure 1.2.1.  The
Northern  Great  Plains  Assessment Area
(NGPAA) consists of portions of five states:
eastern and northern  Montana, all of North
Dakota,  the western five-sixths  of South.
Dakota,  northeastern  Wyoming, and north
central and northwestern Nebraska. Areas in
Canada that may fall within the ecoregions
used to define this  assessment were  not
included.  The area is drained by two major
river systems. The Red and Souris Rivers flow
to Hudson Bay, and the Missouri River drains to
the Mississippi River and the Gulf of Mexico.
There  are  numerous important  subbasins
 including the Sheyenne, a tributary to the Red
 River, and  the Yellowstone, Little Missouri,
 Cheyenne,  James,   Powder,   Niobrara  and
 Platte Rivers, tributaries to the Missouri River.

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Chapter 1 - Introduction
 Topography

    Elevations range from about 700 to 800
 feet above sea level in the North Dakota prairie
 pothole country and along the Red River to
 6000 feet in the  Powder  River  Basin  and
 Missouri Escarpment (U.S.  Forest Service,
 1994).  The southern portion of the Northern
 Great Plains in the Nebraska Sand Hills ranges
 between two thousand and four thousand feet
 in elevation.

    The northern  and  eastern  parts of the
 region are typified by glaciated plains and hills
 with numerous kettle lakes and moraines.  The
 Red River valley is flat with rolling terrain at the
 edges.  Western  and central areas of the
 Northern Great Plains  are gently sloping to
 rolling plains with badlands and tablelands as
 one moves further west. The southern portion
 contains the Nebraska Sand Hills consisting of
 dunes stabilized  by vegetation  with  gently
 sloping valleys between the dunes.

    The boundary between the western Great
 Plains and the glaciated northeastern plains in
 central  North  Dakota is referred to  as the
 Missouri Escarpment (Keefer, 1974). West of
 the escarpment, the country levels off onto the
 Missouri Plateau,  which stretches  to central
 Montana,   northeastern  Wyoming   and
 northwestern South Dakota. The most eastern
 segment of the Missouri Plateau is a 12 to 25-
 mile wide  strip of irregular terrain of hills and
 lakes called the   Missouri  Coteau (Keefer,
 1974). The landscape of the Missouri Plateau
 is dominated  by  plains and  low-lying  hills
 interrupted by entrenched river valleys  and
 isolated uplands,   buttes and  mesas.   The
 Williston  and  Powder  River  Basins  are
 downfolds separate from the adjacent geologic
 features (Keefer, 1974).  The Williston Basin is
 located in western North Dakota, northwestern
 South Dakota and eastern Wyoming, while the
 Powder River Basin is located in southeastern
Montana and northeastern Wyoming.
Hydrology

   The hydrology of the Northern Great Plains
varies  considerably over the region.   Well
developed  dendritic drainages exist in the
central   and  western   parts   and   fairly
disorganized  drainages  characterize   the
northeastern  section (U.S. Forest  Service,
1994).   Large portions  of the northeastern
Northern Great Plains have terminal drainages
which flow to small  lakes and wetlands, never
entering the Missouri or Red Rivers.  These
drainages are most common in eastern North
Dakota and northeastern South Dakota.  The
southern Northern Great Plains (Sand Hills) has
many small lakes and ponds.

   The dominant  hy.drologic feature of the
Northern Great Plains is the Missouri River.
Exiting  the Rocky Mountains   in  western
Montana, the Missouri Rivertravels eastward to
North Dakota,   where it converges with the
Yellowstone River.  It then flows southeast and
southward through central South Dakota before
turning eastward again forming the boundary
between  South Dakota and Nebraska.  Five
dams have been constructed on the  Missouri
River in this section, the largest of which form
Fort  Peck  Reservoir   in  Montana,   Lake
Sakakawea in North Dakota and Lake Oahe in
North and South  Dakota.   Another larger
reservoir, Canyon Ferry, is just upstream of the
NGPAA on the Missouri.

Geo/ogy/So;/s

   The underlying geology of the assessment
area is predominantly Cretaceous shale with
Tertiary sandstone in  the  Sand Hills  and
Quaternary alluvium covering Archean granite
under portions of the Red River Valley  (U.S.
Forest  Service, 1994).   In addition,  the Red
River Valley has lacustrine deposits from  once
being covered by the Glacial Lake Agassiz.
Glacial till  covers the northern and eastern
parts of the assessment area. The central and
8

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                                                  Northern Great Plains Aquatic Assessment
western portions of the assessment area have
soils of fine to medium texture and in the Sand
Mills, the sandstones are covered by loess and
dune sand.

Climate

   The Great Plains climate results from its
orientation on the continent with respect to the
Rocky Mountains and the  Gulf  of  Mexico
(Reichman, 1989). Pacific airflows in from the
west and loses its moisture passing over the
Rocky Mountains, resulting in scarce rainfall,
which in turn yields the arid shortgrass prairies.
Further east,  the airflow is  warmed  and
rehydrated by the northerly flow of moist air
from the Gulf of Mexico. The increased rainfall
yields  the  mixed  and   tallgrass  prairies.
Therefore, there is a general increase in rainfall
on the Northern Plains from west to east, with
10 to 20 inches per year falling in the west and
17 to 24 inches falling in the Red River Valley,
Sand Hills and eastern South Dakota (U.S.
Forest Service, 1994).

   Average temperatures increase from north
to south, from 36° to 45° F in northern Montana
and the Red River Valley to 48° to 52°F in the
Sand  Hills  (U.S.  Forest  Service,   1994).
Correspondingly, the growing season  ranges
from  approximately 100 to  130  days in the
north and northwest to 130 to 160 days in the
south and southeast.  Evapotranspiration in the
Sand Hills is about eight to nine inches during
the warmest months (Willhite  and Hubbard,
1990).

Grasslands

    Fire and grazing  are the major factors in
maintaining grasslands across regional scales,
while  local  variation,  however, is  more
influenced by topography,  soils, and seed
source  availability (Harrington and  Harmon,
1995). North to south gradients in temperature,
day length, and precipitation,  along with the
west  to  east  moisture  gradient, affect  the
natural distribution  of grass species.   The
temperature  gradient also  influences  the
distribution of agricultural crops: spring wheat,
rye, oats, and barley are grown in the  north;
com is grown in the central plains; and winter
wheat and grain sorghum is grown in the south
(Harrington and Harmon, 1995). The moisture
gradient  coincides with the subdivision  of the
grasslands into shortgrass steppe, mixed-grass
prairie and tallgrass prairie.  The following is  a
brief discussion  of the vegetation types that
appear on the Great Plains (from Harrington
and Harmon, 1995).

Shortgrass Steppe consists of grasses that are
20 to 50 cm high.  Blue grama and buffalo
grass  dominate this  area,   but  western
wheatgrass, needle-and-thread, and wiregrass
are also important. These grasses are timed to
grow with spring  rains and  most go dormant in
the summer.   They  may have  evolved in
response to grazing pressure  from   native
ungulates as indicated by their lowness and
focus on  root production. Shorter grasses can
tolerate years of below normal rainfall

Mixed-Grass  Prairie  is  a transition  zone
between shortgrass and tallgrass. Therefore,
it contains species of both regions. Blue grama
and buffalo  grass occupy a lower layer, while
little bluestem, needle-and-thread,  side-oats
grama and western wheatgrass penetrate
above this level to  heights of about 125 cm.
This zone shifts eastward in  dry years  and
westward in wet ones. These are not species
migrations, but changes in species dominance
within the region.  A comparison of climate
factors  to vegetation types shows that the
mixed-grass prairie  coincides with a  region
receiving 50% or less of normal rainfall  during
July of major drought years.

 Taligrass Prairie contains grasses that grow to
 more than two  meters  in height.  It has the
 greatest species diversity of the grassland

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                                                                                               NGP Boundary
Figure 1.2.1 Northern Great Plains Assessment Area

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                                                 Northern Great Plains Aquatic Assessment
types with the dominants being big bluestem,
Indian grass, and switchgrass.  On drier sites,
little   bluestem,  side-oats  grama,   prairie
dropseed, needlegrass and June  grass are
common.  Climate and fire both play a role in
maintaining tallgrass prairie.

Riparian Forests penetrate into the grassland
region along major streams. They use the local
ground water supply of the  stream and, as a
result,  are  somewhat  resistant  to  major
droughts.   Cottonwoods, elms, willows and
ashes are the dominant trees. Their seedlings
germinate during spring flooding.

   In the  NGPAA, grasses dominate the
landscape, with variations in species depending
on the rainfall and temperature regime of the
area. Bluestem and indian grass  mixed with
northern  floodplain  forest  was the  original
vegetation of the Red River Valley (U.S. Forest
Service,  1994).   To  the west and  south,
floodplain forest reaches into the grasslands
along the streams, but grasses change to a
wheatgrassrbluestem-needlegrass community.
In the Nebraska Sand Hills, bluestem and
sandreed   mix  with  wheatgrass   and
needlegrass.     Farther west,   a  grama-
wheatgrass-needlegrass community begins to
dominate.  In some areas, especially in the
southwest portion of the assessment area,
ponderosa pine grows  on some of  the higher
ridges and slopes leading to higher elevations
(Black Hills, Bighorn Mountains, etc.),  •

Land Use

   The  Red River Valley is considered to be
prime farmland and the landscape is dominated
by  agriculture.   Wheat, sugar  beets and
potatoes are grown here.  To the west and
southwest from the Red River Valley, dryland
crops take over as well as cattle grazing.
Reaching the extreme southern and western
parts of  the NGPAA.  such as the Nebraska
Sand Hills and the Powder River Basin, grazing
becomes the dominant land use.

   Mineral extraction  is  important in some
parts of the assessment area. Surface mining
for coal and oil and gas extraction is common in
parts of Wyoming, Montana and North Dakota.
Metal mining (gold, silver, etc.) is important in
the Black Hills.  While not in the assessment
area,  this  mining has impacted Great Plains
streams beyond the Black Hills.

   The human population of the counties
within the NGPAA is 1,953,363 based on 1995
Census Data estimates. This estimate includes
some areas outside the boundary used for the
NGPAA because  the population  for entire
counties is used,  whether or not the entire
county is within the boundary. The majority of
this population  lives  in eastern and  central
North Dakota,  eastern  South Dakota,  the
eastern side of the Black Hills, the North Platte
Valley in Wyoming and Nebraska, and along
the Yellowstone,  Milk  and Upper Missouri
Rivers in Montana. The areas with very low
population  densities  are  the  Sand Hills  of
Nebraska, central  and western South  Dakota
and   much  of  eastern  Montana  and
northeastern Wyoming outside  of major river
valleys.     Noticable   population  increases
occurred between 1985  and  1990  in  the
northeast part of the Black Hills and in parts of
central North Dakota.

1.3 WATERSHEDS OF THE NORTHERN
GREAT PLAINS

   The NGPAA contains all or portions of 180
eight-digit hydrologic unit codes. This size unit
represents the scale at which the information in
this   assessment  will  be  analyzed  and
presented. Throughout the document, eight-
digit  hydrologic units will be synonymous with
the term watershed.  The average size of a
eight-digit hydrologic unit code in the NGPAA is
1,191,087  acres  (1861  square miles), with
                                                                                  11

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Chapter 1 - Introduction
ranges from 7735 to 4,321,835 acres (12 to
6753 square miles).  The watersheds in the
assessment area are depicted in Figure 1.3.1,
along with four of the major drainage  areas
(Hudson Bay, Yellowstone River, Platte River
and the rest of the Missouri River basin).

1.4  ECOLOGICAL REGIONS  OF  THE
NORTHERN GREAT PLAINS

   Two major ecological  divisions divide the
Northern Great Plains Assessment Area: the
Prairie Division (along the Red  River in North
Dakota) and the Temperate  Steppe Division
(the  remaining  area)  (U.S.  Forest  Service,
1994).  Within the  Prairie  Division in  the
Northern Great Plains, is the  Prairie Parkland
Province and the Red River Section within that
Province.

   The Temperate Steppe Division  has  two
ecological provinces, the Great  Plains Steppe
and the Great Plains Dry  Steppe.  The Great
Plains Steppe Province has four sections: the
Northeastern Glaciated   Plains,  the North-
Central  Great Plains, the Western Glaciated
Plains and the Nebraska Sand Hills. The Great
Plains Dry Steppe  Province also  has four
sections:  the  Powder   River Basin,  the
Northwestern   Glaciated    Plains,   the
Northwestern Great  Plains and the Northern
Glaciated  Plains. The  Black  Hills  are  not
included in the NGPAA, but are discussed as
necessary  when they  influence the plains
surrounding them or when particular data sets
include  them.  The  ecological  sections  are
shown in Figure 1.4.1.   The following is  an
overview of each ecological section within the
NGPAA,  with  information  primarily   from
Ecological  Subregions of the United States,
U.S.  Forest Service  (1994), unless otherwise
noted.
Prairie Division

Prairie Parkland Province

   This Division and Province contain only one
ecosection within the NGPAA.  The Red River
Valley Section encompasses the eastern one-
sixth of North Dakota and a portion of western
Minnesota  that  is  not  included  in  the
Assessment Area. It is 18,300 square miles in
size (including the Minnesota side).  The Red
River of the North flows through this section
before crossing  the  border  into  Canada,
eventually entering Lake Winnipeg and Hudson
Bay.   The Red River is formed by the
confluence  of the Bois de  Sioux  River and
other tributaries. This section was the southern
extension of what originally was  the Glacial
Lake Agassiz. Therefore, it is often referred to
as the Glacial Lake Agassiz Plain.  Tributaries
to the Red River enter from the uplands to the
east and west.   The major tributaries entering
from the North Dakota side are the Sheyenne,
Maple, Goose,  Forest,  Park, Tongue,  and
Pembina Rivers. The original vegetation of this
area was bluestem-indiangrass with northern
floodplain forest along the rivers and streams.

   The  topography   is   level,   creating
meandering streams.  The Red River varies
greatly in flow, with destructive floods occurring
on occasion in April and May from snowmelt
and  rainfall (U.S. Environmental  Protection
Agency, 1992a). Because of the low gradient,
floods that  do  occur tend to  inundate large
areas (North Dakota Department  of Health,
1988).   Originally  there  were   numerous
wetlands in this region, however, most have
been drained for agriculture.  Large numbers of
both  nesting and migrating waterfowl were
once supported by these wetlands,  but many
have  been reduced in numbers,  especially
pintail,  mallard,   teal,   and  canvasback.
However, others such as Canada goose and
sandhill crane are doing well because of grain
residues from agriculture.
12

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                                                                     U.S. EPA Main Libraiy
                                                                     Mail Code C267-01
                                                                     109 TW. Alexander Drive
                                                                     Research Wangle Park, NC 27711
                                                                                                 Major Drainages
                                                                                                           Bay
                                                                                                   \Missouri River
                                                                                                   Yellowstone River
                                                                                                   Plane River
Figure 1.3.1 Watersheds and Major Drainage Basins of (he Northern Great Plains

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Chapter 1 - Introduction
   The land cover in the southern part of this
section is predominately cropland mixed with
riparian woodland  and pasture.  The central
area grows more small grains and com. The
northern  part  is  a  mixture  of  the  same
coverages in the south and central with the
addition of wheat,  potatoes and sugar beets.
This region is the most populated area in North
Dakota, with major population centers along the
Red River itself, including the cities of  Fargo,
Grand Forks and  Wahpeton.   Non-irrigated
agriculture is the  most important economic
activity in this section. The eastern portion of
the Sheyenne  National Grassland is  in this
section.

Temperate Steppe Division

Great Plains Steppe Province

   The Northeastern Glaciated Plains Section
is  located in east-central and northern North
Dakota  and covers an area of 27,900 square
miles. The terrain is level to undulating  glacial
till and lake plains.  Drainage  in this area is
disorganized with numerous pothole lakes and
ponds,  many  of which serve as terminal
drainages, the largest of which is Devils Lake.
The Devils Lake basin became closed after the
last glaciation receded and southerly drainage
into the Sheyenne River ceased  (Ryckman,
1995).    The   Souris  River  drains  the
northwestern part   of  this  section.    Its
headwaters are in Canada, but the Souris flows
into the United States and out again, joining the
Assiniboine River and eventually the Red River,
near Winnipeg.  Manitoba. The headwaters of
the James River and the Sheyenne River are in
the Northeastern  Glaciated  Plains as are
several  of the smaller rivers that drain to the
Red River, including the Turtle, Maple,  Forest
and Park. The Pembina River also enters from
Canada, flowing through this section  before
entering the Red River Valley.

   Many of the wetlands in this section have
been drained.  However, remaining wetlands
provide important habitat for waterfowl. The
depressions, ponds and potholes are used as
resting and feeding grounds along north-south
migration routes and as nesting and rearing
areas for numerous species of ducks.  This
area is part of what is commonly referred to as
the  Prairie  Pothole  Region.   Despite  the
wetland losses that have occurred, this region
is the most productive waterfowl breeding area
in  the country.   The  native  vegetation is
wheatgrass-needlegrass-bluestem.

   Small  grains, corn,  riparian  woodland,
pasture and  mixed  cropland  occur in  the
southeastern part of this section. North of this,
the small grains and corn begin to dominate.
Farther north, wheat, barley and sunflowers are
grown and dominate the land use to the north
and west, mixed in with scattered grassland.
The Turtle Mountains are in the northeastern
portion  of this  section,  near the Canadian
border and have a land cover consisting of
cropland,  wetlands,  pasture  and  some
woodlands. Most of the northeastern portions
of the  Northeastern  Glaciated Plains  are
cropland for wheat, potatoes and sugar beets.

   The largest  cities  in  this  section  are
Jamestown, Devils Lake and Minot. The Fort
Totten and Turtle Mountain Indian Reservations
are located  in this area.   The economy is
predominantly   agriculturally based.   The
western  parts  of the  Sheyenne  National
Grassland is in this section.

   The Western Glaciated Plains  Section
forms a corridor 11,600 square miles in size
running north  to  south through east-central
South  Dakota.  This  section is an important
migration corridor for most species of waterfowl
and potholes or associated wetlands provide
breeding habitats for many species. The land
is  level to undulating glacial till plains with a
native  vegetation of  wheatgrass-bluestem-
needlegrass and floodplain forest.
14

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                                                                                                            Ecosections

                                                                                                        I Nor A western
                                                                                                             Glaciated Plains
                                                                                                        2 Northern
                                                                                                             Glaciated Plains
                                                                                                        3 Nordieastern
                                                                                                             Glaciated Plains
                                                                                                        4 Red River Valley
                                                                                                        5 Northwestern
                                                                                                             Great Plaint
                                                                                                        6 Powder River Basin
                                                                                                        7 Western
                                                                                                             Glaciated Plains
                                                                                                        8 North-Central
                                                                                                             Great Plains
                                                                                                        9 Ulack Hills
                                                                                                        10 Nebraska Sand Hills
Figure 1.4.1 Ecological Sections of the Northern Great Plains (from Ecological Regions of the United States,  U.S. Forest Service

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Chapter 1 - Introduction
   Most of this section is drained by the James
River.  The southern portion is drained by the
Missouri River and its immediate tributaries
(Choteau Creek). Portions of this section drain
into lakes and wetlands that do not reach either
the James or the Missouri. The Missouri River
is  dammed just downstream of  this  section
(Gavins Point), which forms Lewis and  Clark
Lake, whose waters reach up into the southern
tip of the section:

   In the northern  and central portions of this
section,  a  mosaic  of  cropland,   riparian
woodland, pasture  and wetlands dominate.  In
the south, this changes to corn, soybeans and
alfalfa.  The largest cities in this section are
Aberdeen, Huron and Mitchell, however, there
are numerous  small towns, the economy is
based on agriculture with some manufacturing.
The  Yankton  Indian  Reservation and the
northern  portion  of  the  Santee   Indian
Reservation in Nebraska are in this section. No
national grassland units fall within the Western
Glaciated Plains.

   The North-Central  Great Plains  Section
extends from northern Nebraska to southern
and central South Dakota and is 16,700 square
miles in size. The area is level to gently rolling
till  plains  with  potholes and  well-defined
drainage  systems.   Prairie  potholes are
important habitat for many species of migrating
waterfowl.     The  native  vegetation   is
wheatgrass-needlegrass-bluestem   and
northern floodplain  forest.

   The northeastern iparts of this section drain
to  the James River, while the  Missouri River
flows through the central part. The White River
enters  from the Northwestern Great Plains
Section and joins  the  Missouri  River.   The
Missouri has two darns in this section, Big Bend
and Fort Randall, which form Lake Sharpe and
Lake Francis Case,  respectively. The southern
parts of this section  are drained by the Niobrara
and its tributaries such as the Keya Paha River
 and Ponca Creek.

    The land cover in the northern reaches of
 this section is scattered  crop  and hayland
 mixed with bluestem-wheatgrass-needlegrass.
 This grass complex is the dominant vegetation
 in the western and southwestern region of the
 North-Central Great Plains. Croplands of com,
 soybeans,  and  alfalfa  mix  with  riparian
 woodland and pasture in the southeast portion.

    This section is not heavily populated, the
 largest towns being Winner and Chamberlain.
 The Rosebud, Lower Brule and Crow Creek
 Indian Reservations  are within this section.
 The   southwestern  half of the  Fort Pierre
 National Grassland is in this section.

    The Nebraska Sand Hills Section contains
 about 19,300 square miles located in north-
 central Nebraska.  It is an area of loess and
 dune sand stabilized by vegetation. The native
 vegetation  is  wheatgrass-needlegrass-
 bluestem  with bluestern-sandreed. Only a few
 minor scattered areas of cropland exist.  The
 Niobrara River flows through the northern edge
 of the Sand Hills, entering from the southern
 portion of the Northwestern Great Plains. The
 headwaters of the Loup River, its tributaries
 (Cedar Creek, Calamus Creek, Dismal River,
• Middle, North and  South  Forks)  and  the
 Elkhom  River are in  the Sand  Hills.  The
 Niobrara flows to the Missouri River, the Loup
 and the Elkhom flow to the Platte River and
 eventually to  the Missouri River.  The  High
 Plains Aquifer, which stretches from southern
 South Dakota to the Texas panhandle, reaches
 its greatest thickness under the Sand Hills
 (Bleed, 1990).

    The human population in the Sand Hills is
 very small.  Most towns in this area have only a
 few hundred inhabitants.  The largest nearby
 towns, Valentine and Alliance are on the very
 edge outside  of the Sand Hills.  Most of the
 land is in large ranches and cattle production is
16

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                                                  Northern Great Plains Aquatic Assessment
the main economic activity. The Bessey Unit of
the Nebraska National Forest and the Samuel
R. McKelvie National Forest are in the Sand
Hills.

Great Plains Dry Steppe Province

   The Northwestern Glaciated Plains Section
section covers 40,700 square miles in northern
Montana. The terrain is level to gently rolling
glacial till plains and rolling hills on the Missouri
Plateau.   There are high density  dendritic
drainage patterns on areas of exposed marine
shales.   Low to  medium density  drainage
patterns occur on the better drained glacial till.
The  native vegetation is  grama-wheatgrass-
needlegrass.

   The Marias River and its tributaries flow into
this section from the Rocky Mountains and then
join the Missouri River. The Milk River enters
from  Canada (after starting  in the  United
States)  and  meets the  Missouri River  just
downstream from Fort Peck Dam. The Missouri
River mainstem exits the Rocky Mountains,
collects flow  from the Marias and  Milk,  and
enters the  Northern  Glaciated Plains.   The
Missouri River is dammed to produce  Fort Peck
Reservoir.

   Around the Fort Peck Reservoir in the
southeastern part of this section, the dominant
land cover is grama-wheatgrass-needlegrass
grassland.  The central and western parts are
a  mixture  of grassland and  dry cropland.
Irrigated cropland occurs east of the Rocky
Mountains  and  in  the  Milk  River  Valley.
Grassland mixed with conifers spreads out from
the mountains in the west and southwest.  A
few  small  mountain  ranges dominated by
ponderosa pine, douglas-fir and other conifers
dot the region. These include the Little Rocky
Mountains,   the  Sweet  Grass  Hills,  the
Highwood  Mountains  and  the Bear   Paw
Mountains.    The   Little Belt and Judith
Mountains  form the southwest limit of this
section.

   The major population centers in this section
are Great  Falls,  Havre,  Glasgow  and Wolf
Point.  All or parts of four Indian Reservations
are contained within  this section, including
Blackfeet, Rocky Boys, Fort Belknap and Fort
Peck. • It also includes all of the Charles M.
Russell National Wildlife  Refuge surrounding
Fort Peck  Lake.   The  economy  is  based
primarily on ranching and irrigated agriculture.
There  are no national grassland units in the
Northwestern Glaciated Plains.

   The Northern  Glaciated  Plains Section
forms a band from northwestern North Dakota
to  north-central  South  Dakota  along the
Missouri River covering 26,900  square miles.
The land is gently undulating to rolling glacial till
plains. The wildlife species here are typical of
riparian areas  and  prairie  potholes.    The
streams form low to medium dendritic drainage
patterns,  and change to high.density dendritic
patterns  where  the sedimentary rocks are
exposed due to erosion of badlands.

   The Missouri River dominates this region.
It enters this section before the confluence with
the Poplar River, joins the Yellowstone River
and becomes impounded as Lake Sakakawea
behind Garrison Dam. The Missouri then flows
into  the   Northwestern  Great  Plains,  but
tributaries  to it flow west from the Northern
Glaciated Plains.  This region is known as the
Missouri  Coteau  and it contains  numerous
terminal lakes, ponds and wetlands.

    Dry cropland, grassland, riparian woodland
and pasture dominate the southern part of this
area,  which  changes  to   grassland  with
scattered cropland and hayland to the north. In
the northwestern portion, dry  cropland with
scattered grassland and  wheat is the primary
land cover.  The far northwestern portion is
covered  by wheatgrass-needlegrass.
                                                                                   17

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Chapter 1 - Introduction
    The largest city in the Northern Glaciated
Plains is Williston,  North Dakota.  This section
includes the Fort Berthold Indian Reservation
and the northern portions of the Little Missouri
National Grassland. The economy is based on
agriculture, recreation, oil and gas extraction
and coal mining.

    The Northwestern Great Plains Section is
located in southwestern North Dakota, western
South  Dakota,   northwestern   Nebraska,
northeastern  Wyoming  and  southeastern
Montana.   It is the largest of the  ecological
sections in the Northern Great Plains with an
area of 76,100 square miles.  The terrain is
gently sloping to rolling shale plains. There are
some steep flat-topped buttes and badlands.
The drainages are  long, structurally controlled
second and third  order  streams with low
gradients and are fed by high density dendritic
first order streams.

    The Missouri  River is  dammed in this
section to produce Lake Oahe   After exiting
Oahe Darn it flows into the North-Central Great
Plains.  Much  of  the Little Missouri River's
headwaters  and rnainstem flow  through the
northwestern part  of  this section.  Both the
Cheyenne and the  Belle Fourche Rivers enter
this section from the Powder River Basin, flow
around  the   Black  Hills  (collecting  their
tributaries), and join the Missouri River, forming
an arm of Lake Oahe. Two important streams
with headwaters in this section are the Niobrara
and the White.  The Niobrara enters the  Sand
Hills from this section and the White enters the
North-Central  Great  Plains.   A number of
tributaries to the Missouri have essentially their
entire flow in the Northwestern Great Plains
from headwaters to mouth. These include the
Grand, Moreau, Knife, Cannonball,  Heart and
Bad Rivers.  The  Powder River leaves the
Bighorn Mountains and  briefly  enters this
section  before entering  the  Powder  River
Basin.  The southwestern edge of this region
contains the North Platte River and its northern
tributaries.

   The  northern  part  of  this  section is
grassland composed of grama and  buffalo
grass.   Toward the northeast  and east this
changes to a mix of  grassland,  scattered
cropland, hayland and bluestem-indiangrass-
wheat-grass.   The southeast is  bluestem-
indiangrass-wheatgrass as it grades into the
Sand Hills.   Further to the south, a  pine-
grassland-brushland  mosaic   begins,  with
stands of pine found  along the Pine Ridge
area.    A  dry  cropland/grassland   mix
intermingles with these other types up to the
North Platte River, where irrigated crops are
found.  The southwest area, which reaches into
and between the southern end of the Bighorn
Mountains  and  the Laramie   Mountains, is
grama-wheatgrass-needlegrass and sagebrush
steppe.  The  northwestern section contains
grama-buffalo  grass,  dry  cropland,  some
grassland/conifer mix and a small  amount of
irrigated crops along the Belle  Fourche River,
north of the Black Hills.

   Major  population   centers   in   the
Northwestern  Great Plains are  Bismarck,
Dickinson,  Chadron, Alliance,  Pierre,  Rapid
City, Hot Springs, and Casper.  All or portions
of the  following  National  Grasslands  are
located in this section: Thunder Basin, Little
Missouri, Grand  River,  Cedar  River,  Oglala,
Buffalo Gap and Fort Pierre. In addition, the
Pine Ridge Unit of the Nebraska  National
Forest Pine Ridge  and  the Custer National
Forest are  located here. The Northwestern
Great  Plains  include portions or  all of the
Rosebud, Pine Ridge,  Cheyenne  River and
Standing Rock Indian Reservations as well as
the Badlands and Theodore Roosevelt National
Parks.  The economy is based on irrigated and
dryland agriculture, ranching, tourism, oil and
gas extraction and coal mining.

   The Powder River Basin  Section covers
45,000 square miles in southeastern Montana
18

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                                                  Northern Great Plains Aquatic Assessment
and northeastern Wyoming. The landscape, is
gently rolling to steep dissected plains on the
Missouri Plateau with some flat-topped buttes.
Low to medium density drainages occur on
more permeable surfaces.

   The  Musselshell River rises in the Crazy,
Little Belt and Big Belt Mountains and drains to
the Missouri River at Fort Peck Reservoir. The
Yellowstone  River is  a major feature of this
section,  leaving the mountains, and flowing
through  the northern part,  exiting  to  the
Northwestern Great Plains before entering the
Missouri.  The Powder River is a dominant
feature of the eastern part, entering from the
Northwestern Great Plains and flowing to its
confluence with the Yellowstone  River.  As
mentioned  earlier,  the Belle   Fourche and
Cheyenne  Rivers   have  much   of their
headwaters in this section.

   The western border of this section is formed
by the Bighorn, Beartooth, Little Belt and Crazy
Mountains.   Grassland mixed  with  conifers
covers much of the  central  portion  of  this
region, especially along and to the south of the
Yellowstone  River.  Grama and buffalo grass
mixed with dry cropland is the dominant land
cover in the east-central area, with  grama-
wheatgrass-needlegrass/dry cropland  more
common further north. In the south, west of the
Black Hills and east of the Bighorns,  grarna-
wheatgrass-needlegrass and sagebrush steppe
are the most common.

   The major population centers in this section
are Gillette, Sheridan, Miles City and Billings.
This area includes portions or all of the Crow
and Northern Cheyenne Indian Reservations.
The   economy  is  based  on  agriculture,
ranching, and  coal mining.   Portions  of the
Thunder Basin National Grassland  and the
Custer  National  Forest  are  located in  the
Powder River Basin.
1.5 HISTORICAL PERSPECTIVE

   The history of the Great Plains has been
driven by the extremes of weather that have
occurred over time. While humans have lived
in the Great Plains for at least 11,000 years
(Floras, 1995), they have been at the mercy of
great droughts  and  severe  winters.    The
longest drought  period  known  was  the
Altithermal, a two thousand year drought that
caused the abandonment of the Great Plains
(Flores, 1995). Indian peoples moved into the
Great Plains about 1000 years ago, but they
too were dnven out by drought in 1299 (Flores,
1995).

   White  settlement of the  Northern  Great
Plains  began in the latter half of the 19th
century.   The  Northern  Great Plains  were
obtained by the  United States from France as
part  of the  Louisiana Purchase and the
expedition  of Lewis  and Clark marked the
opening of the area for settlement. Initially, the
plains were an area to pass through on the way
to California or Oregon, but starting  in the
1850s, these areas began to be settled, helped
by the passage of the Homestead Act in 1862.

   By. the  late  1870s and 1880s the  Plains
Indian  Tribes had been forcibly relocated to
reservations and the free-roaming bison herds
had  been  eliminated.   With this  change,
expansion  of cattle into  the Northern Great
Plains  then began with the utilization  of the
open range system (Miller, 1990). Speculative
ventures led to  overstocking of the range and
overgrazing (Miller,  1990).  The large herds
entered the winter of  1886 in poor condition
and  severe blizzards  nearly destroyed the
industry, with  some  ranches  experiencing
losses of 50 to 75% (Miller, 1990; Manning,
1995).  As a result, a transition  from open
range  to producing hay to winter-feed cattle
began, which is the system used today (Miller,
1990; Manning, 1995).
                                                                                   19

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Chapter 1 - Introduction
   After World War I, high wheat prices and
the Enlarged Homestead Act led to an increase
in farmers entering the Northern  Great Plains
(West,  1990,  Obermiller,  1992).   Between
70,000 and 80,000 people settled on Montana
farms  between  1909 and 1918,  however,
60,000  would  leave  before 1922  (Manning,
1995).  Wheat yields, however,  did not peak
until 1931 at more than 20  million acres in
production (West, 1990). With so much land in
production during favorable weather years, the
stage was set for the drought that came in the
1930s.  The "Dust Bowl" was triggered by a
normal drought, but was made much worse by
the great  change  that had occurred to  the
ecosystems of the Great Plains (Flores, 1995).
As a  result of the drought conditions of the
1930s, the United  States  government began
purchasing submarginal lands from bankrupt
farmers and planted cropland back into grasses
and initiated grazing  rotations on  rangeland
(West, 1990). These areas were referred to as
Land Utilization (L-U) Projects (West, 1990). In
1937  the Bankhead-Jones Farm Tenant  Act
gave  these  lands  to  the Soil Conservation
Service (now Natural Resources Conservation
Service) to manage.  These lands  were later
transferred in  1953 to the Forest  Service to
become the national  grasslands.   Some,
however, were transferred to other federal
agencies, such as the Fish and Wildlife Service
for National Wildlife Refuges, prior to transfer
to the Forest Service.

   Agriculture in the  Northern Great Plains
underwent   another   major   transformation
following World War II with the introduction of
irrigation from underground aquifers.  In 1959,
Nebraska irrigated less than a million acres of
cropland;  in  1977,   it was  seven  million
(Manning, 1995). Most of this change occurred
from tapping into the Ogallala Aquifer, which by
1980  was  watering   20%  of  the  nation's
cropland (Manning, 1995), only part of which is
in the Northern Great Plains.
   The draining of the vast wetland resources
in the Northern Great Plains began with early
settlement, but increased dramatically after the
1940s  (Johnson and Higgins, 1997).  High
commodity prices  and the  introduction  of
mechanized  farming,   as  well  as federal
assistance aided in creating pressures to drain
wetlands (Johnson  and Higgins,  1997).  The
issuance of Executive  Order 11990, which
required  that effects of federal  projects on
wetlands be evaluated, and the requirements of
Section 404  of the Clean  Water Act have
slowed the loss of wetlands.

   Major changes  in  the  Missouri  River
occurred in the years following World War II.
Most prominent, was the construction of the six
dams on the mainstem of the  river.   This
brought about dramatic changes in the aquatic
habitat of the river and has led to  declines in a
number of species dependent on the rivers
natural flow regime.   The  creation of the
reservoirs also flooded  many prime areas on
the Indian Reservations bordering the river.

   During the 1970s, many changes occurred
in how the aquatic resources of the Northern
Great Plains (and all other areas) would be
managed.   The  passage  of the National
Environmental  Policy   Act  mandated  that
environmental  effects  of federal actions be
analyzed. The numerous pollution control acts
such as the Clean Water Act, the Clean Air Act,
etc.  brought changes  in  how  wastes are
disposed  of  into  the environment.   The
Endangered Species Act requires the recovery
of  species  that   are  endangered   and
threatened.

   The Northern Great Plains are undergoing
another time of change as population shifts,
manifested as losses to most rural areas and
growth in others.  These changes will have
differing  impacts  on the  environment  than
previous  events.
20

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 Status of Aquatic Resources
 2.1 INTRODUCTION

 Question 1  What is known about the
 current status and  apparent trends  in
 water  quality,   aquatic  habitat  and
 aquatic species  in the  Northern Great
 Plains Assessment Area?

   This chapter examines the condition and
 extent of aquatic habitats in the Northern Great
 Plains from streams and rivers to lakes and
 ground water.  These particular habitats are
 described in detail in Section 2.2. Wetlands
 and riparian areas are discussed separately in
 Chapter 3.-  Quality of   surface waters  is
 discussed in Section 2.3.  On a watershed
 basis,  the levels  of  selected  parameters
 including fecal coliforms, dissolved solids and
 dissolved  oxygen  are compared to water
 quality standards.  The overall water quality
 status  for most watersheds as reported by
 state   environmental  agencies  is  also
 presented.   In  Section 2.4, the quality of
 ground water is examined for parameters such
 as dissolved solids,  nitrates and pesticides.

   The condition  of  aquatic  habitat with
 respect to certain  ecological  measures  is
 examined.  In Section 2.5,  the status of the
 aquatic species inhabiting these environments
 is  presented  and  Section  2.6  specifically
 examines  the   status  of  aquatic   species
 designated as endangered, threatened or of
 special concern. Section 2.7  describes an
 analysis of the risk to various aquatic species
 using a computer model.

   At present, there is no regionwide water
 quality  monitoring -effort  occurring, in  the
 Northern  Great  Plains  Assessment  Area
 (NGPAA).  Available monitoring information  is
 mainly the result individual state efforts.  In
addition,  several  U.S.  Geological  Survey
 NAWQA (National Water Quality Assessment)
 Program units fall within the NGPAA and more
 intensive monitoring is occurring there.

    Each section in this report is generally
 organized with the following subheadings:
 introduction, key findings, data sources, data
 quality and gaps, spatial patterns and future
 trends.

 2.2  STREAMS, RIVERS, LAKES AND
 AQUIFERS

 Introduction

   The Northern Great Plains Assessment
Area  contains a wide variety of aquatic
 habitats. These include perennial streams
 more common in the  eastern portions, with
fewer in the west;  large rivers such as the
 Missouri; streams fed mainly by ground water
in the Nebraska Sand Hills; large expanses of
wetlands and  lakes  in the eastern and
northern portions;  large  artificial   lakes;
numerous small ponds and stock ponds and
extensive underground aquifers. This section
discusses  the  characteristics   of  each
waterbody type and  its importance to the
human and wildlife  populations that depend.
on them.

   Snowpacks are important in  providing
moisture to various aquatic systems.  The
Northern Great Plains snowpack ranges from
10 to 40 inches deep and, along with the
snowpack in the Rocky Mountains, provides
much of the moisture the region receives
(Huntzinger, 1995).  A larger amount  of
rainfall  in the eastern parts,  along with
snowmelt,  provides  for   more   perennial
streams.  Further west, normally the only
perennial streams are those that flow from
mountains or are fed by  ground  water. In
some places, infiltration of precipitation to
shallow ground water is the only source of
stream  flow.   Streams connected only to
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 Chapter 2- Status of Aquatic Resources
 ground water often have different temperature
 and water quality characteristics than stream
 flow originating from runoff (Huntzinger, 1995).
 Flooding  can  occur throughout  the Great
 Plains, but  occurs  more frequently  in the
 eastern part with  its greater precipitation.
 Snowmelt from the mountains may  cause
 flooding in the large rivers of the Great Plains,
 especially if coinciding with high spring rainfall.

 Intermittent / Ephemeral Streams

    Intermittent streams  are  those that are
 below the ground water table part of the year
 and flow only in  response  to precipitation
 events or ground water discharge (Montana
 Department of Environmental Quality,  1994).
 Therefore, much of the year they may be dry.
 Ephemeral streams  are above the ground
 water  table  and flow  only  when  there  is
 precipitation  (Montana   Department  of
 Environmental Quality, 1994). In the Northern
 Great   Plains,  intermittent  and  ephemeral
 streams are common over much of the area,
 especially in the western and central parts.

    Great   Plains   streams   are   harsh
 environments for aquatic life.  They generally
 have sandy bottoms, with the contours of the
 bottoms changing rapidly, smothering aquatic
 vegetation and burying eggs of fishes (Collins,
 1985). In addition, there is very little cover and
 water temperatures can rise to lethal levels.
 Conditions in intermittent streams regularly
 approach the physiological tolerance limits of
 organisms and even slight perturbations from
 wastewater effluent, siltation or removal of
 shade  may  cause  those tolerances  to be
 exceeded (Zane, et  al. 1989).  As a result,
 plains  rivers and streams are not particularly
 fertile.   However, ihis underestimates their
 importance because  these streams serve as
 focal points for numerous wildlife species and
they have many unique species adapted to this
 environment.
Perennial Streams

    Perennial streams are those that flow year
round, because there is enough rainfall in the
watershed  and  they have  a  continuous
connection to ground water.  In the NGPAA,
perennial   streams  are  represented  by
numerous streams in the east and the larger
streams in the west, those that flow from the
Black  Hills and other mountain areas and
Sand  Hills streams  fed by ground water.
Since the flow in these streams is more stable
and reliable, there is more biological diversity
instream and in the riparian areas.

    Sand Hills streams exist under a unique
set of hydrologic conditions. Precipitation in
the Sand Hills quickly recharges the  ground
water  and  later discharges into  springs or
seeps.  In contrast, in areas outside of the
Sand Hills with less sandy soils, precipitation
runs  off more easily,  forming tributaries.
Since  Sand Hills  streams derive their flow
mostly from ground water ratherthan overland
runoff, they are less likely to be affected by air
temperature, are less likely to freeze during
the  winter  and  have   little   seasonal
temperature variability (Bentall, 1990). Sand
Hills streams  also  differ from most  other
streams in the Northern  Great Plains in that
they have few tributaries, flow at very steady
rates, rarely flood, and are  low in  dissolved
solids (Bentall, 1990).

Large Rivers

   The Missouri   River is the   dominant
hydrologic  feature of the  Northern Great
Plains.  Originating in the snowmelt of the
Northern Rocky Mountains it drains the vast
majority  of the  region. _   The  historical
hydrologic  pattern  of the  Missouri  River
consisted of a  peak in March and April from
snowmelt on the plains,  a decline in  May, a
higher peak in June from snowmelt in the
Rocky Mountains and rainfall throughout the
22

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                                                  Northern Great Plains Aquatic Assessment
 basin and a decline throughout the summer
 (Hesse, etal. 1989). This predam hydrograph
 defined the channel morphology and floodplain
 characteristics of the  river (USFWS,  1994).
 The historical  dominant discharge (flushing
 flows that occur about every 1.5 years on
 average) were estimated by Hesse and Mestl
 (1993) at about 100,000 cfs.  This flooding of
 the Missouri River is critical to the aquatic life
 which has adapted to it. The high spring flows
 stimulated  the native  fish  to  spawn  and
 maintained the high turbidity levels to which
 these species  adapted (Pflieger and Grace,
 1987). There are presently four species listed
 as  threatened  or endangered  that  are
 associated with the Missouri Riven the bald
 eagle, the least tern, the pallid sturgeon and
 the piping plover.  Several others  are either
 proposed for listing, are candidates or are of
 special concern.

   Between 1938 and 1963  six major dams
 were built on the mainstem  of the Missouri
 River.  These six dams can collectively store
 92 billion cubic meters of water, which is more
 than the mean  annual discharge at the mouth
 of 70 billion cubic meters (Schmulbach, et al.
 1992). Johnson (1992) described the changes
 in flow after Lake  Sakakawea  began filling
 behind Garrison Dam in 1953. Between 1928
 and 1953, about two-thirds of the annual peak
 flows were greater than 2500 cubic meters per
 second (Johnson, 1992). The largest peak on
 record was 14,150 cubic meters per second in
 1952. After 1953 no peak has exceeded 2500
 cubic meters per second, however, the total
 annual discharge has not changed.

   This can be seen in the difference between
the original natural hydrograph and the present
 one.  The hydrograph now rises in March to a
 point much lower than the traditional flood
peaks and stays at this level  until November
(Hesse and Mestl, 1993).  River meandering
has ceased and the flood pulse and floodplain
connection have been nearly eliminated (U.S.
 Fish and Wildlife Service, 1994). The dams
 have become barriers to fish migration and
 sediment transport, have disrupted spawning
 cues and  the  temperature  of the water
 released from the dams tends  to be much
 colder than that to which the native fish are
 adapted (U.S. Fish and  Wildlife  Service,
 1994).  Overbank flooding is also one of the
 components of the original river that is missing
 from  the  postdam  floodplain environment
 (Johnson, 1992).

    Other large rivers in the Northern Great
 Plains include the Yellowstone, the Red River
 of the North and the Platte. The Yellowstone
 is one of the largest free-flowing rivers in the
 contiguous  United  States,   however   a
 significant amount of water is diverted  from
 the river for  irrigation.  The Red also is
 undammed, but water quality problems  from
 nonpoint and point source pollution affect it
 The Platte River itself is largely outside of the
 NGPAA, although  many of its   tributaries
 originate within  it.   The discussion of the
 Platte is, therefore, much less extensive than
 the  other major rivers,  but since many
 activities affecting it derive from tributaries
within  the  Northern  Great  Plains,  it  is
 examined when necessary.

 Natural Lakes / Wetlands

   The  northeastern part  of the Northern
 Great Plains  (eastern  and northern North
 Dakota and eastern South  Dakota) contains
 numerous lakes and wetlands and is referred
to as the Prairie Pothole region. Some of the
 lakes are large, such as Devils Lake and Long
 Lake. The lakes in the northeastern Northern
Great Plains  were  formed  by water filling
depressions left by the retreating glaciers of
the last ice age.

   Numerous  small, shallow natural lakes
and ponds are also  found in the Sand  Hills.
 Much of the western third of the Sand Hills
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 Chapter 2 - Status of Aquatic Resources
 region lacks streams and is referred to as the
 Closed Basin Area, containing many lakes and
 wetlands (Bleed and Ginsberg, 1990). Many of
 the interdunal valleys in the Sand Hills contain
 lakes, marshes and wet meadows that receive
 water from precipitation, surface runoff and
 ground water (Bleed and Ginsberg, 1990). In
 general, Sand Hills lakes tend to be alkaline.
 The lakes in the Closed Basin Area have the
 highest alkalinity and primary production within
 them is high due to the abundance of sunlight
 and shallow depths  (Bleed and Ginsberg,
 1990).  Lakes in the central and eastern Sand
 Hills are lower in alkalinity. Species of algae,
 macrophytes, and zooplankton differ due to
 varying alkalinity levels (Bleed and Ginsberg,
 1990).

 Reservoirs

    The  largest reservoirs on  the Northern
 Great Plains are those on the Missouri River.
 Fort Peck Lake, Lake Sakakawea, Lake Oahe,
 Lake Sharpe, Lake Francis Case and Lewis
 and Clark Lake.  Fort Peck was the first to'be
 completed in 1938. Fort Randall Dam (Lake
 Francis   Case),  Garrison   Dam   (Lake
 Sakakawea); Gavins Point (Lewis and Clark
 Lake), Oahe Dam (Lake Oahe) and Big Bend
 Dam (Lake Sharpe) were all completed in the
 period between 1952 and 1963.  The largest
 three are Oahe, Sakakawea and Fort Peck.
 These dams are operated primarily for flood
 control,   navigation  and  power  production,
 depending on the need and the available flow
 (U.S. Fish and Wildlife Service, 1994).

    Both the  reservoirs themselves and the
 tailwaters from their releases support fisheries
 that were either not present or uncommon in
 the Northern Great Plains before the creation
 of the dams. For example, according to Owen
 and Power (1989) and Riis (1989) fishes in the
 Lake Sakakawea and Lake Oahe tailwaters
 changed from channel  catfish and sauger to
walleye, salmon and trout.
Aquifers

    There are three major regional aquifer
systems within the Northern Great Plains
Assessment Area: the High  Plains Aquifer
System, the  Northern Great  Plains Aquifer
System and the Great Plains Aquifer System.
In addition, the unconsolidated and glacial
deposit aquifers  overlying these  in  many
areas are extremely important.

    Within the Northern Plains, the High Plains
Aquifer  covers  southern South  Dakota,
southeastern Wyoming and most of Nebraska
(U.S. Geological Survey, 1996). It consists
mainly  of  aquifers  in  upper Tertiary and
Quaternary rocks with water at less than 200
feet in depth and generally less than 400 feet
in thickness.   This is the aquifer saturating
most of the Sand Hills area.   The confining
unit under this  aquifer is   the  Chadron
Formation.  There are three aquifers (aside
from  the  Quaternary  dune  sands  and
alluvium) within  this  aquifer.   These  are
located in the Tertiary formations and are the
Ogallala, Arikaree and Brule aquifers.

    The Ogallala Formation is the principal
geologic unit  in the High Plains Aquifer and
consists of unconsolidated gravel,  sand, silt
and clay (U.S. Geological Survey, In Press).
It was deposited by eastward-flowing streams
draining the Rocky Mountains during the late
Tertiary Period.   Within  the NGPAA,  the
Ogallala is located throughout most of central
and western  Nebraska  (U.S.  Geological
Survey,  1988).     The   Arikaree  is  in
northwestern   Nebraska and southeastern
Wyoming  and the  Brule  is  in western
Nebraska  (near  the  North  Platte)  and
southeastern  Wyoming.

    Water  in   the  High Plains Aquifer is
generally unconfined (at the water-table) (U.S.
Geological  Survey, In  Press). Recharge to
the High Plains Aquifer is from precipitation
24

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                                                  Northern Great Plains Aquatic Assessment
 and some infiltration by irrigation and natural
 discharge is to springs and streams.  Most of
 the discharge from the High Plains Aquifer is
 by withdrawal  by wells, and almost all is for
 irrigation (U.S.  Geological Survey, In Press).

    The Northern Great Plains Aquifer System
 underlies most of North Dakota, South Dakota,
 eastern Montana and northeastern Wyoming
 and it lies mostly  within the Williston and
 Powder River basins and areas of structural
 uplift that flank these areas (U.S. Geological
 Survey, 1996a).  The major aquifers of this
 system are  sandstones  of  Tertiary  and
 Cretaceous  age and  carbonate rocks of
 Paleozoic age.  These aquifers form one of the
 largest confined aquifer systems in the United
 States.   The individual  aquifers  within this
 system in the NGPAA include the Fort Union,
 the Hell Creek-Fox Hills, and the  Inyan Kara
 Group (U.S. Geological Survey,  1988).   A
 confining layer of Pierre Shale separates the
 Inyan Kara from the others above. The Fort
 Union formation  underlies the Powder and
 Williston Basins  in Wyoming,  Montana and
 North Dakota. The Hell Creek/Fox Hills aquifer
 is most extensive in a band through central
 North Dakota and northwestern South Dakota.
 It rims the Powder and Williston Basins. The
 Inyan Kara  Group  is   located in a  band
 surrounding the Black Hills.

    Regional movement  of  water  in  the
 Northern Great Plains Aquifer System is from
 recharge areas at high altitudes down the dip
 of the aquifers  and then upward to discharge
 into shallower aquifers or to the land surface
 (U.S. Geological Survey, 1996a). The regional
flow in the deep confined aquifers follows long
flow paths from southwest to northeast.  Most
of the recharge to the aquifer system is from
precipitation  that falls  on outcrop  areas
exposed by erosion or from streams that cross
aquifer outcrops,  seeping downward through
the streambeds   into  the aquifers   (U.S.
Geological Survey,  1996a).   Much  of the
 discharge from  the  aquifer  system is by
 upward  leakage of water  into  shallower
 aquifers and  some  water discharges  into
 lakes   and   streams   near  the   North
 Dakota/Minnesota  line  (U.S.   Geological
 Survey, 1996a).

    In   eastern   North   Dakota,   highly
 mineralized water discharges from the lower
 aquifers by upward  leakage  into overlying
 unconsolidated  deposits  (U.S.  Geological
 Survey, 1996a).  Some of this saline water
 moves  through  permeable  areas  of  the
 unconsolidated deposits into lakes, streams
 and wetlands, causing the surface water to be
 saline.

    The  Great  Plains   Aquifer  System is
 composed of lower cretaceous water-bearing
 sandstone and underlies most of Nebraska
 (as well as western Kansas and eastern
 Colorado) (U.S. Geological Survey, In  Press).
This system is situated below the High Plains
Aquifer System.  Two major  aquifers in the
 lower cretaceous make up this system, the
Apishapa (lower) and  the Maha (upper). The
 Maha underlies western South Dakota  and
 northwestern  Nebraska.   The  Apishapa
 underlies western  Nebraska.   In general,
water  in each  aquifer flows from  west-
 southwest to east-northeast (Jorgensen, et al.
 1993).   The  major  recharge  area is in
 southeastern  Colorado from  precipitation
falling  on outcrop areas  and flows east-
 northeast to central  Kansas and eastern
 Nebraska (U.S. Geological Survey, In  Press).
 Some recharge does occur from leakage from
the overlying High Plains Aquifer System as
well.

    Overlying these aquifer systems in some
 areas  are the unconsolidated and  glacial
 deposit  aquifers.    The  unconsolidated
 systems are  along  streams  and  valleys
throughout the NGPAA and the glacial deposit
 aquifers are very extensive north and east of
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 Chapter 2 - Status of Aquatic Resources
 the Missouri River in  North  Dakota, South
 Dakota and Montana. They are recharged by
 precipitation and serve as a source of water to
 shallow wells and for recharge to.the lower
 bedrock aquifers. In North and South Dakota,
 most of the cities east of the Missouri River
 that use ground water obtain water from glacial
 drift aquifers  (North Dakota  Department of
 Health, 1994; South Dakota  Department of
 Environment and Natural  Resources, 1996).
 Water from glacial drift aquifers is generally
 less mineralized than water from the bedrock
 aquifers.

 Key Findings

 •There are 180 eight-digit hydrologic unit codes
 (watersheds) in  the Northern Great Plains
 Assessment Area.
 •Precipitation is  highest in the southeastern
 portions of the NGPAA (eastern South Dakota
 and eastern Nebraska) at more than 20 inches.
 It is lowest in northeastern  Wyoming and
 eastern Montana with less than 15 inches.,
 •Stream density  is highest in  western South
 Dakota  and is lowest in eastern and central
 North Dakota.
 •Three major aquifer systems are located in
 the NGPAA. They are the High Plains, the
 Northern Great Plains and Great Plains aquifer
 systems.
 •The hydrograph of the Missouri River has
 changed from having two prominent  flood
 peaks each year to a long steady flow covering
 most of the year.
 •Most  of  the watersheds in the NGPAA
 experience mean flows of less than 1000 cfs.
 A few watersheds  in the Yellowstone and
 Missouri River mainstems have mean flows of
 greater than 10,000 cfs. Much of the NGPAA
 experience wide variabilities in flow from year
to year.
•Reservoir  area  is  greatest in watersheds
connected with the Missouri River, reflecting
the existence  of larger reservoirs  such as
Oahe, Sakakawea and Fort Peck.
 Data Sources

    The eight-digit watershed boundaries were
 digitized  from 1:100,000-scale maps. The
 stream  density  in  each  watershed  was
 determined  from  the U.S.  Environmental
 Protection Agency's Reach File version 3.0
 (RF3). RF3 is based on the 1:100,000-scale
 U.S. Geological Survey  Digital Line Graph
 (DLG) data.

    Information on the aquifer systems of the
 Northern Great Plains was provided by the
 U.S.  Geological  Survey.    Precipitation
 information was obtained from the National
 Climate  Data  Center.    Missouri  River
 information was obtained from the U.S. Army
 Corps of  Engineers  Draft  Environmental
 Impact Statement for the Missouri  River
 Master Water Control Manual, the U.S. Fish
 and Wildlife Service's Biological Opinion to
 the  Draft  Master  Manual  and literature
 reviews.   The streamflow  information was
 obtained from STORET.

 Spatial Patterns

    Table  2.2.1 lists all of  the eight-digit
 watersheds in the NGPAA. There are 180
 eight-digit watersheds wholly or partly within
 the Northern Great Plains.

    Figures  2.2.1   and  2.2.2  show the
 precipitation for the Northern Great Plains for
 1990 and 1993, respectively.  A near normal
 precipitation year occurred in 1990 and a wet
 year in 1993.  There is  a  general trend of
 increasing  precipitation  from  northwest to
 southeast.   This   precipitation   pattern
 determines much of the aquatic features of
the Northern Great  Plains  landscape, with
 higher stream flows in the east and streams in
the west  dependent on  streamflow derived
from the higher elevation regions. As can be
seen  from  Table  2.2.1  and  Figure 2.2.3,
stream density in the Northern Great Plains is
26

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highest in the Black Hills and adjacent areas of
northeastern Wyoming, western South Dakota
and southwestern North Dakota. It is lowest in
the prairie pothole regions of North and South
Dakota.  Nebraska was not included in this
analysis.

   The discharge of the Missouri River has
changed since  the  construction  of  the
mainstem dams.  Formerly two flood  peaks
occurred in March/April and June. However,
due to the construction of the mainstem dams,
these peaks have been replaced by a long
steady flow from March through November.
The effects of this change are discussed in
more detail  in Chapters 3 and 5.

   Figure 2.2.4 shows the amount of reservoir
area in each watershed.  The Missouri River
reservoirs stand out with their large individual
areas, but other areas in the Upper James,
North Platte, Belle Fourche, Marais, Sourisand
Sheyenne River watershed also have large
impounded  areas.

   Streamflow in the NGPAA is shown for the
period 1980 to 1995 in Figures 2.2.5,2.2.6 and
2.2.7. From the minimum flow data recorded,
for the most part at the lowest station in each
watershed, much of the NGPAA experienced
very low flows within this time frame. Only the
Missouri  and Yellowstone stand  out with
relatively high minimum flows. A comparison of
the low flow data with high flows in Figure 2.2.7
shows the extreme variability present within
these plains river system.  Some watersheds
that experienced flows of less than 500 cfs at
the lowest flow have maximum flows of more
than 20,000 cfs. One, the Lower Cheyenne
River, ranged from a low of 5 cfs to a high of
48,400 cfs during tin's period.
      Northern Great Plains Aquatic Assessment

 2.3 SURFACE WATER QUALITY

 Introduction

   Surface water quality is affected by many
 different factors, both natural and human-
 caused.  Natural factors include the nature of
 the geology  and soils  of  the  watershed,
 climate  (temperature and precipitation) and
 ecological factors.   Human-caused factors
 include pollution from point sources such as
 municipal and industrial wastewater plants,
 pollution from nonpoint source runoff from
 crops, rangeland and cities and modifications
 of streams by channelization, diversion, dam
 construction   and  removal   of  riparian
 vegetation. All of these activities, along with
 any natural limitations, may impact the quality
 of water and therefore, determine whether the
 stream or lake can support aquatic life or be
 used as a drinking water source.

   Point sources can contribute any number
 of pollutants to surface water, ranging from
 biochemical   oxygen  demand,   ammonia,
suspended solids, pH and fecal coliforms in
municipal wastewater to any of these plus
metals, organics and temperature changes in
industrial wastewater.    Nonpoint source
pollution  can contribute fecal  coliforms,
 nutrients and solids from livestock uses to
sediment, pesticides  and  nutrients  from
cropland to  any  number  of  hydrologic
 modifications that may cause temperature and
sediment changes in streams.  In addition,
irrigation of cropland can add salinity and in
 some instances pollutants such as selenium.

   In this section,  data is presented by
watershed showing the condition  of surface
water quality.  Highlighted are the percentage
and number of miles (for streams) or acres
 (for lakes) that are not meeting the beneficial
 uses designated for by the state. Table 2.3.1
 lists the classification system for waterbodies
 used in each State. The states assign these
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 Chapter 2 - Status of Aquatic Resources
 uses,  which include  such  designations as
 aquatic life, recreation,  drinking  water and
 agriculture along with the specific water quality
 criteria necessary to protect  the beneficial
 uses.     The  criteria   are  the  actual
 concentrations of specific pollutants that are
 allowed in the waterbody.  A given waterbody
 can have  from only  one  to  many  use
 designations.   Waterbodies are  defined as
 individual lakes or stream segments that are
 delineated by the state. A few Indian Tribes in
 the Northern Great Plains are working toward
 designation of beneficial uses for Tribal waters.

    States are required by Section 305(b)  of
 the Clean Water Act to assess the ability of the
 waterbodies of the state to meet the uses for
 which they are designated and report this  to
 Congress every two years. The states report
 the number of miles of streams and acres  of
 lakes  that  are fully  supporting, are  fully
 supporting but threatened, partially supporting
 or not  supporting uses.  However, the actual
 number of stream miles assessed within a
 given watershed varies greatly and caution
 must be used in interpreting this  data.  For
 example, a watershed covering an extensive
 area may have had only a small  number  of
 miles assessed and these assessed miles may
 not be  representative of the entire  watershed.
Therefore, while quantitative values are shown
 in the  figures derived  from the 305b  data,
these  should  be recognized as  essentially
qualitative and show areas that are potentially
in good or poor condition.

    Each state has varying criteria as to how to
determine  full  support  versus  partial or
nonsupport, but generally  it involves either the
number of exceedances of a standard when
there is monitoring, data  or other evaluation „.
methods when there is no data.  The State of
Montana,  for  example,  uses  the following
definitions  for  use  support  (Montana
Department of Environmental Quality, 1994):
Full Support- uses are at natural condition or
best practical condition and water quality
standards are not being violated.
Threatened- fully supporting uses, but a new
activity or an increase in existing activities
may  result  in  water  quality  standards
violations.
Partial Support- uses are not being supported
at natural or best practical levels and water
quality standards are not being met (this
category  includes  everything  from slight
impairment to nearly not supporting).
A/on Support - has acute toxics or human
health criteria violations, where biological or
physical data indicate severe degradation or
where other data indicate that water quality
standards are violated and one or more uses
cannot be attained.

    The U.S. EPA recommends that for uses
to be fully supporting, less than 10% of the
monitored parameters should exceed criteria
(U.S.  Environmental   Protection  Agency,
1992). To be partially supporting, between
11 and 25% of values exceed criteria and not
supporting means that more than  25% of
values exceed criteria. South Dakota uses
concentrations of total suspended solids, total
dissolved solids,  pH, temperature, dissolved
oxygen, unionized ammonia, fecal coliform,
metals and others  to  determine total  use
support  (South  Dakota   Department  of
Environment and Natural Resources, 1996).

    Data in this report is also presented for
many of the  specific pollutants that are of
widespread importance in the Northern Great
Plains. These pollutants include total solids,
dissolved  solids,  nutrients,   ammonia,
dissolved  oxygen (too little, rather than too
much), fecal coliforms  a/id    biochemical
oxygen demand.

    Since eight-digit watersheds cover such a
large area,  numerous variations in water
quality criteria and beneficial uses occur within
28

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                                                Northern Great Plains Aquatic Assessment
 Table 2.2.1 Hydrologic Unit Watersheds (8-digit) that are fully or partly within the Northern Great
 Plains Assessment Area, grouped by major drainage basins.	
 Hydrologic Unit Code
 River Basin Name
 Souris River Watershed
 09010001
 09010002
 09010003
 09010004
 09010005
 Red River of the North Watershed
 09020101
 09020104
 09020105
 09020107
 09020109
 09020201
 09020202
 09020203
 09020204
 09020205
 09020301
 09020306
 09020307
 09020308
 09020310
 09020311
 09020313
 Saskatchewan River Watershed
 10010002                      Saint Mary River
 Upper Missouri/Marais River Watersheds
 10030102                      Upper Missouri River-Dearborn
 10030103                      Smith River
 10030104                      Sun River
 10030105                      Belt Creek
 10030201                      Two Medicine River
 10030202                      Cut Bank Creek
 10030203                      Marais River
 10030204                      Willow Creek
 10030205                      Teton River
 Fort Peck Lake/Musselshell River Watersheds
 10040101                      Missouri River (Bullwacker-Dog)
 10040102                      Arrow Creek
10040103                      Judith River
10040104                      Missouri River (Fort Peck Reservoir)
10040105	Big Dry Creek	
Upper Souris River
Des Lacs River
Lower Souris River
Willow Creek
Deep River

Bois de Sioux River
Upper Red River
Western Wild Rice River
Red River (Elm-Marsh)
Goose River
Devils Lake
Upper Sheyenne River
Middle Sheyenne River
Lower Sheyenne River
Maple River
Red River (Sandhill-Wilson)
Red River (Grand Marais-Red)
Turtle River
ForestRiver
Park River
Lower Red River
Pembina River
                                                                               29

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 Chapter 2 - Status of Aquatic Resources
 Table 2.2.1 continued  Hydrologic Unit Watersheds (8-digit) that are fully or partly within the
 Northern Great Plains Assessment Area, grouped by major drainage basins.	
 Hydrologic Unit Code	
 River Basin Name
 10040106
 10040201
 10040203
 10040202
 10040204
 10040205
 Milk River Watershed
 10050001
 10050002
 10050003
 10050004
 10050005
 10050006
 10050007
 10050008
 10050009
 10050010
 10050011
 10050012
 10050013
 10050014
 10050015
 10050016
 Missouri-Poplar River Watersheds
 10060001
 10060002
 10060003
 10060004
 10060005
 10060006
 10060007
Yellowstone Watershed
 10070002
 10070004
 10070005
 10070006
 10070007
 10070008
 10080015
10080016
10090101
10090102
 Little Dry Creek
 Upper Musselshell River
 Flat Willow Creek
 Middle Musselshell River
 Box Elder Creek
 Lower Musselshell River

 Milk River Headwaters
 Upper Milk River
 Wild Horse Lake
 Middle Milk River
 Big Sandy Creek
 Sage Creek
 Lodge Creek
 Battle Creek
 Peoples Creek
 Cottonwood Creek
 Whitewater Creek
 Lower Milk River
 Frenchman Creek
 Beaver Creek
 Rock Creek
 Porcupine Creek

 Missouri River (Prairie Elk-Wolf)
 Redwater River
 Poplar River
West Fork Poplar River
Missouri River (Charlie-Little Muddy)
 Big Muddy Creek
 Brush Lake

 Upper Yellowstone River
Upper Yellowstone River-Lake Basin
Stillwater River
Clarks Fork of the Yellowstone River
Upper Yellowstone River-Pompeys Pillar
Pryor Creek
Lower Bighorn River
Little Bighorn River
Upper Tongue River
Lower Tongue River	

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                                               Northern Great Plains Aquatic Assessment
Table 2.2.1 continued  Hydrologic Unit Watersheds (8-digit) that are fully or partly within the
Northern Great Rains Assessment Area, grouped by major drainage basins.	
Hydrologic Unit Code	
     River Basin Name
10090201
10090202
10090203
10090204
10090205
10090206
10090207
10090208
10090209
10090210
10100001
10100002
10100003
10100004
10100005
Lake Sakakawea Watershed
10110101
10110102
Little Missouri River Watershed
10110201
10110202
10110203
10110204
10110205
Cheyenne River/Belle Fourche
10120101
10120102
10120103
10120104
10120105
10120106
10120107
10120108
10120109
10120110
10120111
10120112
10120113
10120201
10120202
10120203
    Middle Fork Powder River
    Upper Powder River
    South Fork Powder River
    Salt Creek
    Crazy Woman Creek
    Clear Creek
    Middle Powder River
    Little Powder River
    Lower Powder River
    Mizpah Creek
    Lower Yellowstone River-Sunday
    Big Porcupine Creek
    Rosebud Creek
    Lower Yellowstone River
    O'Fallon Creek

    Missouri River (Lake Sakakawea)
    Little Muddy Creek

    Upper Little Missouri River
    Boxelcjer Creek
    Middle Little Missouri River
    Beaver Creek
    Lower Little Missouri River
River Watershed
    Antelope Creek
    Dry Fork of the Cheyenne River
    Cheyenne River (Dry Fork to Lance Cr)
    Lance Creek
    Lightning Creek
    Cheyenne River (Angostura Reservoir)
    Beaver Creek
    Hat Creek
    Middle Cheyenne River-Spring
    Rapid Creek
    Middle Cheyenne River-Elk
    Lower Cheyenne  River
    Cherry Creek
    Upper Belle Fourche River
    Lower Belle Fourche River
    Redwater River
                                                                               31

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 Chapter 2 - Status of Aquatic Resources

 Table 2.2.1 continued Hydrologic Unit Watersheds (8-digit) that are fully or partly within the
 Northern Great Plains Assessment Area, grouped by major drainage basins.	
 Hydrologic Unit Code	River Basin Name	
 Lake Oahe Watershed
 10130101                       Missouri River (Painted Wood-Square Butte)
 10130102                       Missouri River (Upper Lake Oahe)
 10130103                       Apple Creek
 10130104                       Beaver Creek
 10130105                       Missouri River (Lower Lake Oahe)
 10130106                       Western Missouri Coteau
 10130201                       Knife River
 10130202                       Upper Heart River
 10130203                       Lower Heart River
 10130204                       Upper Cannonball River
 10130205                       Cedar Creek
 10130206                       Lower Cannonball River
 10130301                       North Fork Grand River
 10130302                       South Fork Grand  River
 10130303                       Grand River
 10130304                       South Fork Moreau River
 10130305                       Upper Moreau River
 10130306                       Lower Moreau River
 10140101                       Missouri River (Fort Randall Reservoir)
 Fort Randall Reservoir/White River Watershed
 10140102                       Bad River
 10140103                       Medicine Knoll Creek
 10140104                       Medicine Creek
 10140105                       Crow Creek
 10140201                       Upper White River
 10140202                       Middle White River
 10140203                       Little White River
 10140204                       Lower White River
 Niobrara  River Watershed
 10150001                       Ponca Creek
 10150002                       Niobrara River Headwaters
 10150003                       Upper Niobrara River
 10150004                       Middle Niobrara  River
 10150005                       Snake River
 10150006                       Keya Paha River
 10150007                       Lower Niobrara River
 James River Watershed
 10160001                      James River Headwaters
 10160002                      Pipestem Creek
 10160003                      Upper James River
 10160004                      Elm River
32

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                                                 Northern Great Plains Aquatic Assessment
 Table 2.2.1 continued  Hydrologic Unit Watersheds (8-digit) that are fully or partly within the
 Northern Great Plains Assessment Area, grouped by major drainage basins.	
 Hvdrologic Unit Code
 River Basin Name
 10160005
 10160006
 10160007
 10160008
 10160009
 10160010
 10160011
 Lewis and Clark Lake Watershed
 10170101
 10170102
 North Platte River Watershed
 10180007
 10180008
 10180009
 10180011
 10180012
 10180014
South Platte River Watershed
10190018
Platte River Watershed
10200101
Loup River Watershed
10210001
10210002
10210003
10210004
10210005
10210006
10210007
10210008
10210009
10210010
Elkhom River Watershed
10220001
 Mud Creek
 Middle James River
 Eastern Missouri Coteau
 Snake Creek
 Turtle Creek
 Northern Big Sioux Coteau
 Lower James River

 Missouri River (Lewis & Clark Lake)
 Vermillion River

 Middle North Platte River-Casper
 Middle North Platte River (Glendo Reservoir)
 Middle North Platte River-Scotts Bluff
 Lower Laramie River
 Horse Creek
 Lower North Platte River

 Lower  South Platte River

 Middle. Platte River-Buffalo

 Upper Middle Loup River
 Dismal River
 Lower Middle Loup River
South Loup River
 Mud Creek
 Upper North Loup River
Lower North Loup River
Calamus River
Loup River
Cedar River

Upper Elkhom River      	
                                                                                33

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                                                                                             1990 Preclpitaton,
                                                                                                  Inches
                                                                                             I    \9-13
                                                                                                  13-17

                                                                                                  21 -26
Figure 2.2.1 Precipitation for the Northern Great Plains in 1990

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                                                                                          1993 Precipitation,
                                                                                                incites
                                                                                          [\14~19
                                                                                          r   : 19-24
                                                                                          Jim 24-29
                                                                                               29-36
Figure 2.2.2 Precipitation for the Northern Great Plains in 1993

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                                                                                           Stream Density,
                                                                                              feet/acre

                                                                                           (liU 0.5 -10
                                                                                                 10-20
                                                                                                 20-30
                                                                                                 30-40
Figure 2.2.3 Stream Density by Watershed in the Northern Great Plains

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                                                                                              Reservoir Area,
                                                                                                  Acres
                                                                                                 0 • 5000
                                                                                                 6000 - 25000
                                                                                                 26000-100000
                                                                                                 > 1 00000
Figure 2.2.4 Reservoir Area in the Northern Great Plains

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                                                                                        Minimum
                                                                                         F.lotv, eft
                                                                                             No Data
                                                                                             0-500
                                                                                             501 - WOO
                                                                                             1001 - 5000
                                                                                             >5000
Figure 2.2.5 Minimum Flows During the Period 1980 to 1995

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                                                                                      Mean flow, cfs
                                                                                           No Data
                                                                                           0-1000
                                                                                           1001 - 5000
                                                                                           5001 - 10000
                                                                                           > 10000
Figure 2.2.6 Mean Flows During the Period 1980 to 1995

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                                                                                     Maximum
                                                                                      Elow, cjs

8                                                                                         No Data
                                                                                         0-5000
                                                                                         5001 • 20000
                                                                                         20001 - 40000
                                                                                         >40000
Figure 2.2.7 Maximum Flows During the Period 1980 to 1995

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                                                 Northern Great Plains Aquatic Assessment
watersheds.  A specific stream segment or
lake within a watershed may have more or less
stringent  criteria.  This  report,  therefore,
compares levels of specific pollutants with
common water  quality criteria levels in the
Northern Great  Plains,  not the actual water
quality criteria at the specific  station  from
which the data was obtained, since they vary
from state to state and segment to segment.
The station in  each watershed  used was
chosen based on the amount of data available
(ten years or more), whether it was  on the
mainstem and how far downstream in the
basin it was  (lowest was preferred).   This
information was  not meant to show the status
of all  streams within  a watershed, but was
chosen as an integrator of effects from all over
the  watershed  to  varying  degrees  of
applicability.  Another given station in  the
same watershed could have better or worse
water quality depending on the segment it is
in.  It  was decided not to try to use all  data
from all  stations since this would overwhelm
the broadscale  nature  of this assessment,
which is meant to show potential proble'm
areas.

   The use of the 305(b) report information,
however, seeks to balance the use  of  data
from only one station (in each watershed) by
adding in the assessments states have done
on numerous segments in each watershed.

Key Findings

•The watersheds with the highest percentages
of  assessed miles  of  streams partially
supporting and not supporting uses include
large sections of the NGPAA, particularly in
the Red  River basin,  the tributaries to the
Missouri in South Dakota, the Milk and other
Missouri tributaries in Montana and the Platte
basin in Nebraska.
•The watersheds with the highest percentages
of assessed miles of streams not supporting
uses include the  Lower James, western South
 Dakota Missouri River tributaries, parts of the
 Platte  basin  and  some  upper  Missouri
 tributaries in Montana.
 •The watersheds with the lowest percentages
 of  assessed  miles  of  streams  partially
 supporting and not supporting  uses are the
 James Headwaters, the Little  Missouri  and
 parts of the Missouri River in North Dakota.
 •The watersheds with the lowest percentages
 of assessed miles of streams not supporting
 uses are in  much of North  Dakota, eastern
 Montana,  and the Sand Hills  of Nebraska
 (Loup and Niobrara drainages).
 •The watersheds with the highest percentages
 of assessed acres of lakes partially supporting
 and  not   supporting  uses are  Fort Peck
 Reservoir, Lake Sakakawea and Devils Lake.
 •Fecal coliforms  are highest the in White,
 Niobrara,  Lower  Loup  and James  River
watersheds.  They are generally  less than 400
 in most monitored watersheds  as a median
value.
 •Dissolved solids are highest in the North Fork
of the  Grand River, the Redwater  River in
 Montana, O'Fallon Creek, the South Fork of
the Powder, the Little Powder, the Angostura
 Reservoir section of the Cheyenne River and
the  Eastern Missouri Coteau  watersheds.
They are lowest in the Niobrara and Loup
watersheds  and   the  Tongue,   Lower
Yellowstone, Upper James and parts of the
Sheyenne,  Milk  and Upper Missouri River
watersheds.
•Dissolved oxygen is lowest in the Upper Little
 Missouri  and  South Fork  of  the  Moreau
watersheds,   however,  the   problem  is
widespread.
•Most lakes  in the NGPAA have a trophic
status listed  as mesotrophic. Wyoming  and
 Nebraska have the largest percentage of lakes
listed as eutrophic or hypereutrophic.
•Fish consumption  advisories   have been
 issued for Box Butte Reservoir, Beaver Creek
 (Loup Watershed), Merritt Reservoir and Lake
Ogallala in Nebraska; the Missouri River, Red
 River and twenty-two lakes  in North Dakota
                                                                                 41

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Table 2.3.1  Surface Water Beneficial Use Classifications Used by States in the Northern Great Plains
Montana
      A (A-closed and A-1)
      B(B-1, B-2, B-3)
       C-1 and C-2
       C-3
Wyoming
       1
       3
       4
 South Dakota
       1
       2
       3
       4
       5
       6
       7
       8
       9
       10
       11
Very high quality (mainly for protection of domestic use).
For domestic use after treatment, growth and propagation of aquatic life (B-1 and B-2 are
for coldwater aquatic life and  B-3 is for warmwater aquatic life), agriculture and industry.
Most streams are B in Montana.
Same uses as B, but no domestic drinking water use.                     ,
Waters naturally high in total dissolved solids, but may support warmwater fishes.
Impacted. An activity does not allow the water to fully support drinking,, recreation or
fishery uses. The goal is to improve these waters to fully support the uses that it can.
No further degradation by point sources is allowed; nonpoint sources must be controlled
through best management practices                          ^
Waters other than Class 1 that are supporting game fish, have the potential to support game
fish or include nursery areas or food sources for game fish.
Same as Class 2, but for non-game fish.
Waters that do not have the potential to support fish and includes all intermittent and
ephemeral streams. Does have protection for agriculture and industry.     '•
Domestic Water Supply Waters
Coldwater Permanent Fishlife Propagation Waters
Coldwater Marginal Fishlife Propagation Waters
Warmwater Permanent Fishlife Propagation Waters
Warmwater Semipermanent Fishlife Propagation Waters
Warmwater Marginal Fishlife Propagation Waters
Immersion Recreation Waters
Limited Contact Recreation Waters
Wildlife Propagation and Stock Watering Waters
Irrigation Waters
Commerce and Industry Waters	.	

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Table 2.3.1  Surface Water Beneficial Use Classifications Used by States in the Northern Great Plains
Nebraska
                                  Recreation
                                  Aquatic Life (Coldwater Class A and B; Warmwater Class A and B)
                                  industrial
                                  Public Drinking Water Supply
                                  Agriculture (Class A and B)
                                  Aesthetics

North Dakota
                                  Agriculture
                                  Industrial
                                  Domestic and Municipal Water Supply
                                  Recreation
                                  Fishing (Cold, Cool, Warm)
_    	          Aquatic Life      		

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 Chapter 2 - Status of Aquatic Resources
 and in the Marais, Milk, Missouri, Clarks Fork
 of  the  Yellowstone and Tongue  Rivers in
 Montana.
 •Watersheds with high total solids
 concentrations include  the White and  the
 Cheyenne.
 •Atrazine is one of the pesticides most often
 detected in streams in the eastern NGPAA.
 •Nitrates in the Red River have been found to
 be at concentrations less  than  1  mg/l.  In
 central Nebraska, the concentrations ranged
 from 0  to  1.8  mg/l,  with  some smaller
 agricultural watersheds having values as high
 as 3.7mg/l.
 •Missouri River water quality is generally good
 with a few problems such  as low dissolved
 oxygen in reservoirs, cold temperatures below
 dams and mercury in the Cheyenne River arm
 of Lake Dane.

 Data Sources

    Much  of the  information used in  this
 section was obtained from the 305(b) Water
 Quality  reports prepared  by the States  *of
 Montana,  Nebraska, North Dakota,  South
 Dakota and Wyoming. The 1996 reports were
 used from  Nebraska,   South Dakota  and
 Wyoming,  the 1994  report was  used  for
 Montana and the 1998 report was  used for
 North Dakota.   Information from the 1996
 303(d) lists of impaired waterbodies was also
 used. These reports presented information on
 miles and acres of waters assessed and the
 condition with regard to  meeting  designated
 uses, the causes (e.g., ammonia, nutrients) of
 failing to meet the uses and the sources (e.g.,
 agriculture, municipal wastewater). In several
 cases  use  support information was  not
 presented by watershed  and the data had to
 be converted into that form. The reports also
 provided information on where toxic impacts
were noted and where fish  consumption
advisories  had  been issued.   Additional
information on fish consumption advisories
was obtained  from the  U.S. Environmental
 Protection  Agency's  Index  of Watershed
 Indicators  (U.S.  Environmental  Protection
 Agency, 1997a).

    Information  on individual pollutants  was
 retrieved by the U.S. Geological Survey-Water
 Resources Division from the Storet database.
 This covered the period from 1980 to 1995.
 The data  is presented  as the  minimum,
 median and maximum values (whichever is
 most informative) for the station used in each
 watershed. The information on the effects of
 large dams on water quality and much of the
 water quality information on the Missouri River
 itself  was  obtained  from  the  Draft
 Environmental  Impact Statement  for  the
 Missouri River Master  Water Control Manual
 by the  U.S. Army Corps of Engineers.

 Data Quality and Gaps

    Large areas in the  Northern Great Plains
 would  likely benefit from more water quality
 data collection.  Fecal colifomn data is lacking
 in eastern Montana.   Total solids  data  is
 missing for eastern Montana and  most  of
 North Dakota. There is only scattered data for
 BOD, with most of Montana, southwestern
 North Dakota, northwestern and central South
 Dakota and  parts  of  Wyoming  lacking
 information. Data  on ammonia  was  not
 represented geographically because it  was
 lacking within   the   Storet  dataset  and,
 therefore,  no conclusions  over this broad an
 area could be obtained. However, it should be
 noted again that this analysis is based on one
 station in the watershed and there could be
 more data  from  other  stations.  The station
 used though, is the one most likely to have the
 most data and is the one generally where data
would be most likely to be regularly collected.

   The quality of the information in Storet is
variable for some parameters and needs to be
verified. In addition, there are quality concerns
with regard to the 305(b) reports; much of the
44

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                                                 Northern Great Plains Aquatic Assessment
 assessments are not based on monitoring, but
 on evaluations using some other data, and can
 also  be  subjective.   Methods  for using
 available data, preparing the 305(b) reports
 and defining use support varies from state to
 state, therefore, one should be careful making
 direct comparisons between states.

    There  is  some  question  as   to the
 relationship between the use of fecal coliforms
 as a measure and the causes of waterbome
 illnesses to swimmers.   Presently,  there is
 research in developing a better measure, but
 currently,  only   fecal   coliform   data  is
 widespread enough to assess this aspect of
 water quality.

 Spatial Patterns

    The quality of waters in the Northern Great
 Plains has  generally improved in the last 25
 years.  Much of this improvement has been
 due to  controls  placed  on point  sources.
 According   to  the  U.S.  Environmental
 Protection  Agency (1990),  based  on the
 305(b) reports submitted by the states, 60% of
 the assessed  rivers and  streams  in the
 Northern Great Plains were  fully supporting
 their designated uses (nationwide it was 70%).
 The three leading causes of the 40%  not fully
 supporting  are  sediment,  nutrients  and
 pathogens.  Agriculture  was responsible for
 77% of the  impairment.    For lakes  and
 reservoirs in the NGPAA, 81 % of them were
fully supporting uses, with nutrients, sediment
 and organic enrichment being the top three
 causes.  Agriculture was responsible for 60%
 of the impairment.

   Figure 2.3.1 presents the assessed miles
of streams in each  watershed which are
partially supporting or not supporting uses (i.e.
not fully supporting).  Watersheds with over
300 assessed miles not fully supporting uses
include the Lower Yellowstone, Fort Peck
Reservoir, Clarks Fork of the Yellowstone,
 Lake Sakakawea, Upper Cannonball, Upper
 and Middle James, Upper White, North Platte-
 Scottsbluff,  and the Middle  Platte-Buffalo.
 Watersheds with less than 50 miles not fully
 supporting uses include parts of the Missouri
 River in North and South Dakota, parts of the
 Niobrara and Loup Rivers in Nebraska, the
 James  Headwaters,  the Upper  Cheyenne
 River in Wyoming and  the Missouri  River
 above Fort Peck in Montana.

    The miles of streams in each watershed
 not supporting uses is presented in  Figure
 2.3.2. The Lower James River has over 200
 miles not supporting.  However, a number of
 watersheds have more than 100 miles listed
 as not supporting, including the White River
 basin, Lake Sakakawea, the Grand, Moreau
 and Lower Cheyenne in South Dakota, the
 Western Wild Rice River in North Dakota, the
 Upper Powder and  North  Platte-Casper in
 Wyoming and the Lower  North Platte, Lower
 Loup  and South  Loup in Nebraska.  Large
 areas of the NGPAA have watersheds with
 less than 50 miles of assessed streams not
 supporting uses.

   The  percentage of  assessed miles of
streams partially supporting or not supporting
 uses  by watershed  is presented in Figure
2.3.3.   The  majority  of  watersheds in the
 NGPAA have more than 50% of assessed
miles which are not fully supporting designated
uses and large areas that have watersheds
with more than 90%  not  fully supporting.
 Notable areas not supporting include the Red
 River basin, the Platte basin, Missouri River
tributaries  in western South Dakota and  a
number  of scattered watersheds in Montana.
Only a few watersheds have less than 10% of
assessed miles listed as not fully supporting.
These include the James Headwaters, parts of
the Souris River basin,  the Missouri River
above Fort Peck Reservoir, Big  Porcupine
Creek and  Boxelder  Creek  in  the  Little
Missouri basin.
                                                                                 45

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                                                                                        Miles Not Fully
                                                                                        Supporting Uses

                                                                                        	 Not Assessed
                                                                                        mm 0-50
                                                                                        —ur_ .i.'-.-jj
                                                                                        iiijj -ioo
                                                                                        mUS 101 -300
                                                                                             >300
Figure 2.3.1 Miles of Streams in Each Watershed Not Fully Supporting Designated Uses

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                                                                                            Miles Not
                                                                                          Supporting Uses
                                                                                          |    | Not Assessed
                                                                                               51 -100
                                                                                               101 - 200
                                                                                               >200
Figure 2.3.2 Miles of Streams in Each Watershed Not Supporting Uses

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                                                                                            Percent Miles
                                                                                              Not Fully
                                                                                           Supporting Uses

                                                                                           \~   | Not Assessed
                                                                                                 n -so
                                                                                                 51 -90
                                                                                                 91 -100
Figure 2.3.3 Percentage of Assessed Miles of Streams in Each Watershed Not Fully Supporting Uses

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                                                  Northern Great Plains Aquatic Assessment
    The percentage of miles of streams  in
 each  watershed not  supporting  uses  is
 presented in Figure 2.3.4. The western South
 Dakota tributaries of the Missouri, the Lower
 James, Arrow Creek and Sage Creek stand
 out as watersheds with more than 90% of
 assessed miles listed as not supporting uses.
 In contrast, much of North Dakota, eastern
 Montana, central South Dakota and the Sand
 Hills of Nebraska have watersheds with less
 than 10% of  assessed miles not supporting
 uses.

    Figure 2.3.5 shows  the  acres of lakes
 partially supporting or not supporting uses by
 watershed.    Fort  Peck  Reservoir,  Lake
 Sakakawea and Devils Lake are watersheds
 with the largest amounts of assessed lake
 acreage not fully supporting uses.

    Figure 2.3.6 shows the  percentage  of
 acres  of lakes partially supporting  or  not
 supporting uses by watershed. The majority of
 watersheds in the NGPAA with assessed lake
 acres have percentages of more than 90% not
 fully supporting uses.   This figure differs
 dramatically from 2.3.5 due to small amounts
 of assessed acres not fully supporting uses,
 but  these  small   amounts  have   high
 percentages.

   Table 2.3.2 lists the trophic status of lakes
 in the Northern Great  Plains.  This includes
 information from all  lakes in each  state,
 including  those not within the Assessment
Area since the information is presented in the
 state 305(b) reports by state. Data on trophic
 status  by watershed were not available for
 each state.  Trophic status is defined as the
 degree of nutrient enrichment of a lake and its
ability to produce algae (Montana Department
of  Environmental  Quality,  1994).    Most
assessments to determine the trophic status
use  Carlson's  Index,  which  uses  total
phosphorus,  chlorophyll  a and secchi disc
depth.  From the least enriched to the most
 enriched,   lakes  are   categorized  as
 oligotrophic,  mesotrophic,  eutrophic  and
 hypereutrophic. The Carlson index value of 35
 is  a transition  between oligotrophic and
 mesotrophic and 50 is the transition between
 mesotrophic  and   eutrophic   (Montana
 Department of Environmental Quality, 1994).

    The majority of assessed  lakes in the
 Northern Great Plains are classified by the
 states as mesotrophic. Individual states varied
 widely in the percentage of  assessed lakes
 listed as eutrophic/hypereutrophic. Wyoming
 listed the most with 56%  and Nebraska was
 second with  42%.   South  Dakota,  North
 Dakota  and Montana  listed  17%, 19% and
 10%,    respectively,    as
 eutrophic/hypereutrophic.  Again, values  do
 not represent only lakes within the NGPAA.

    Sources of fecal' coliform  are  sewage-
 treatment plant discharges and runoff from
 feedlots and grazing areas.  Where they are
 found, it is likely  that contamination from
 human or animal wastes has occurred.  Fecal
 coliform criteria apply to streams that have a
 recreation  beneficial  use,  with  immersion
 recreation (swimming) generally having more
 stringent criteria than for boating only. The
water quality criteria for fecal coliforms is
 generally around 200 MPN  (most probable
 number) for waters with a  recreation use
 classification.  It  can be higher for other
 classifications in some States.

    Figure 2.3.7 presents the median levels of
fecal coliforms in each watershed where data
was available.   The  lower White,  middle
 Niobrara, some lower Loup  tributaries, the
 Upper Moreau, Keya Paha Creek and Elm
 Creek in the James watershed are the areas
with the largest median fecal  coliform values.
The maximum levels of fecal coliforms are
 shown in Figure 2.3.8. Many  of the  same
 areas with  high median fecal coliform levels
 also have high maximum levels, but a few
                                                                                 49

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                                                                                           Percent Miles Not
                                                                                            Supporting Uses

                                                                                            f    | Not Assessed
                                                                                            iiiii} o -10


                                                                                                I 91 -100
Figure 2.3.4 Percentage of Assessed Miles of Streams in Each Watershed Not Supporting Designated Uses

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                                                                                              Acres Not Fully
                                                                                              Supporting Uses

                                                                                            |    (Not Assessed
                                                                                                 0-25000
                                                                                                 25001 - 150000
                                                                                                 JJ000I - 400000
Figure 2.3.5 Acres of Lakes in Each Watershed Not Fully Supporting Designated Uses

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                                                                                          Percent Acres
                                                                                            Not Fully
                                                                                         Supporting Uses
                                                                                               Not Assessed
                                                                                               0- 10
                                                                                               11 -50
                                                                                               51 -90
                                                                                               91 -100
Figure 2.3.6 Percentage of Assessed Acres of Lakes in Each Watershed Not Fully Supporting Designated Uses

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                                                  Northern Great Plains Aquatic Assessment
 Table 2.3.2  Trophic Status of Lakes in the Northern Great Plains States (includes lakes within
 these states outside of the Northern Great Plains Assessment Area).
Trophic Status
Oligotrophic
Mesotrophic
Eutrophic
Hypereutrophic
Total Assessed
Total Not Assessed
Number*
52
120
202
153
537
7998
Area (in acres)
345,928
1,604,632
332,188
170,642
2,423,441
317,976
Percent of Assessed
14
66
14
7


 'Wyoming not included because lakes were not enumerated (only acreage was reported).
 areas are added such as the lower James,
 the Missouri  and Rapid Creek.  Some of
 these  may be  due  to  infrequent  large
 discharges of fecals from a source such as a
 wastewater treatment plant, but which is not
 sustained over the long term.  Much of the
 Northern Great Plains has low median levels
 of fecals, however, individual streams within
 these  watersheds could have very high
 levels.  Many areas within Montana and
 Wyoming,  however, are  lacking  in  Storet
 data.

   Dissolved  solids  levels (median) are
 presented  in  Figure  2.3.9.    While high
 dissolved  solids  concentrations can result
 from  the  natural  geology   and   soils,
 agriculture  and some industrial wastewater
 dischargers can contribute large  amounts.
 U.S. EPA guidance recommends  a level of
 500 mg/l  of  dissolved solids for drinking
water.  Levels of more than 2000 mg/l are
 unsuitable for irrigation (National  Research
 Council, 1973). While cattle can drink water
that has up to 10,000 mg/l total dissolved
solids, swine are limited to below 7000 and
poultry to  below  3000  (Olson and Fox,
unknown date). As the figure shows, there
are large areas within the Northern Great
Plains where  the  median  values  are far
above the 500  mg/I  guidance,  especially
parts of the Upper Powder, Little Powder,
Cheyenne, Grand, and Redwater Rivers, as
well as O'Fallon Creek and streams in the
Eastern Missouri Coteau.  Maximum levels
(Figure 2.3.10) are highest in the Devils
Lake,  Upper  Missouri and Apple Creek
watersheds. Some of the lowest dissolved
solids levels are in the Nebraska Sand Hills
and in parts of Montana.

    Dissolved oxygen  (Figures 2.3.11  and
2.3.12) is critical for aquatic life. Median and
minimum  dissolved  oxygen  levels   are
presented, since in this  case, there  is a
problem when there is too little rather  than
too much.  Most fish species need levels
greater than 3 or 4 mg/l and juvenile fish
need even higher levels of between 5 to 8
mg/l (U.S. Environmental Protection Agency,
1995). Dissolved oxygen can be depleted by
the breakdown of organic compounds or by
rapid growth of algae.  Typically, dissolved
oxygen water quality criteria range from 5.0
to. 7.0 mg/l for waterbodies  classified for
aquatic life, with higher use classifications at
the upper end. Problem areas for median
dissolved oxygen show up in the Upper Little
                                                                                  53

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                                                                                            Fecal Coliform,
                                                                                              #/100 ml

                                                                                            |    | No Data
                                                                                                 0-400
                                                                                                 401 -1000
                                                                                                 >1000
Figure 2.3.7 Median Fecal Coliform in the Northern Great Plains

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                                                                                            Fecal Coliformf
                                                                                             • #1100 ml

                                                                                              No Data
                                                                                              0-10000
                                                                                              10001 - 100000
                                                                                              100001 • 500000
                                                                                              >500000
Figure 2.3.8 Maximum Fecal Coliform Levels in the Northern Great Plains

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                                                                                            Dissolved Solids,
                                                                                                 mg/l
                                                                                                 | No Data
                                                                                             OHO-500
                                                                                             ill 50 J -WOO
                                                                                             0 1001 - 2000
                                                                                                I > 2000
Figure 2.3.9 Median Dissolved Solids Levels in the Northern Great Plains

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                                                                                           Dissolved Solids,
                                                                                                mg/l
                                                                                              No Data
                                                                                              0- WOO
                                                                                              1001 • 10000
                                                                                              10001 -25000
                                                                                              >25000
Figure 2.3.10 Maximum Dissolved Solids Levels in the Northern Great Plains

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                                                                                           Dissolved Oxygen,
                                                                                                 mg/l
                                                                                           y
No Data
0-4
4.1 -8
Figure 2.3.11 Median Dissolved Oxygen Levels in the Northern Great Plains

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                                                                                              Dissolved Oxygen,
                                                                                                    mg/l

                                                                                                   No Data
                                                                                                   0-4
                                                                                                   4.1 -8
Figure 2.3.12 Minimum Dissolved Oxygen Levels in the Northern Great Plains

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                                                                                            Total Solids, mg/l

                                                                                                No Data
                                                                                                0-1000
                                                                                                 1001 - 3000
                                                                                                 >3000
Figure 2.3.13 Median Total Solids Levels in the Northern Great Plains

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                                                                                        Total Solids, mg/l
                                                                                            No Data
                                                                                             0 -1000
                                                                                            1001 • 10000
                                                                                            10001 -25000
                                                                                            >25000
Figure 2.3.14 Maximum Total Solids Levels in the Northern Great Plains

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 Chapter 2- Status of Aquatic Resources
 Missouri River and the South  Fork  of the
 Moreau River.  However, when the minimum
 levels that have been recorded are reviewed in
 Figure 2.3.12 it is obvious that most areas
 within   the   Northern   Great.  Plains  are
 susceptible to low dissolved oxygen at some
 time or another.

    Figures  2.3.13  and 2.3.14 show the
 median and maximum  levels of total  solids,
 respectively,  in each watershed where data
 was available.  This data is limited mainly to
 South  Dakota and parts of Nebraska, with
 Montana,   Wyoming   and  North  Dakota
 generally lacking data. The limited data does
 show,   however,  problem  areas  in  the
 Cheyenne,  White,  Lower James and Lower
 Missouri River watersheds.  High total solids or
 suspended sediment can  result from land
 cover  disturbances, including  agriculture,
 mining or construction. This loading can affect
 aquatic organisms by covering them or their
 habitat and can fill reservoirs.

    Biochemical Oxygen Demand (BOD) is* a
 measure of the organic  material in the water.
 This material can be used by algae and other
 organisms to create a low  dissolved oxygen
 situation. Generally, the more BOD, the more
 the possibility that low dissolved oxygen may
 result.   The numbers   used in  the  figure
 correlate with technology-based. discharge
 limits  for   National  Pollutant  Discharge
 Elimination  System (NPDES) permits, which
 are 30 mg/l on a monthly basis. This is not a
water quality standard  and should only  be
 referred to  as  a  basis  for  comparison.
 Numerous factors could determine whether
this level (or one higher or lower) is harmful to
the  aquatic   system.     These  include
 background  dissolved  oxygen,  streamflow
volume  and   velocity,    and   mixing.
 Nevertheless, a higher BOD value instream is
an indication that dissolved oxygen levels may
be threatened.  Figure  2.3.15 presents the
median  level of  BOD  in  each watershed
where data was available. Areas such as the
Upper Missouri,  Upper  Yellowstone,  and
Cheyenne River stand out as places where a
relatively high median BOD value in stream
exists. The Missouri River in North Dakota has
areas approaching this value.

    Data  for ammonia was not widespread
enough in the Northern Great Plains to discern
any spatial patterns across this broad an area.
However, since it is  an important pollutant it
should not be ignored. One of the sources of
ammonia is effluent from municipal sewage
treatment plants, this being an area where
additional point source controls could provide
more  water  quality  benefits.    Nonpoint
sources,  however, are also significant.  The
water quality criteria for ammonia varies with
pH and temperature, since the unionized form
is the most dangerous to  aquatic life.  At high
pH and temperatures, the unionized form is
more prevalent and the total ammonia criteria
under these conditions are very low.

    Figure 2.3.16 shows the watersheds where
ammonia has been implicated in state 305b
reports as impacting uses.  Watersheds with
the greatest  number of  miles  impacted by
ammonia are  the Upper Red, the Upper and
Middle James, parts of the Yellowstone, the
Middle Platte-Buffalo, the Upper Elkhom, Mud
Creek in  Nebraska and Rapid Creek in South
Dakota.

    On occasion, when sampling of fish tissue
shows a  concern,  states may  issue fish
consumption advisories.  These may take the
form of limits on the number of fish that should
be eaten  (by either the general population or
for susceptible  individuals only) or outright
bans on fish consumption.

    Within the NGPAA,  in 1994 and 1995,
Nebraska issued fish consumption advisories
for Box Butte  Reservoir, Beaver Creek (Loup
River Watershed), Merritt Reservoir and Lake
62

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                                                                                       Biochemical Oxyg
                                                                                          Demand, mg/l

                                                                                       |    | No Data
                                                                                       RiipjO- IS
                                                                                             16-30
                                                                                             >30
n
Figure 2.3.15 Median Biochemical Oxygen Demand in the Northern Great Plains

-------
                                                                                       Miles Impacted
                                                                                        by Ammonia
Figure 2.3.16 Miles of Assessed Streams in Each Watershed Impacted by Ammonia

-------
                                                 Northern Great Plains Aquatic Assessment
Ogallala   (Nebraska   Department  of
Environmental Quality,  1996).  These were
issued for mercury in Box Butte and  Merritt
Reservoirs; dieldrin in Beaver Creek and Lake
Ogallala and polychlorinated biphenyls (PCBs)
also  in  Lake Ogallala.    South Dakota
monitored fish flesh in over 44,000 lake acres
for mercury, PCBs, chlordane and toxaphene
and found levels too low to warrant issuing
fish consumption  advisories (South Dakota
Department of Environment and Natural
Resources, 1996). Wyoming did not issue any
fish consumption advisories during the 1994-5
period  (Wyoming   Department   of
Environmental Quality, 1996). North Dakota
has issued fish consumption advisories for
eighty-one miles of  the Missouri River, 291
miles  of the Red  River and for twenty-two
lakes  for a total  of 471,391 acres  (North
Dakota  Department of Health,  1994).  The
largest  lakes  include   Lake  Sakakawea,
Jamestown  Reservoir,  Devils  Lake,   Lake
Audubon, Lake Ashtabula, Lake Darling and
Lake Tschida.  These advisories have been
issued for mercury. In addition, North Dakota
states that 306 miles of the Little Missouri have
elevated levels  of toxics  (North Dakota
Department of  Health,  1994).   The  toxics
include chromium, copper,  lead and arsenic
resulting from highly erosive soils compounded
by  overgrazing  and  oil  exploration and
extraction   (North   Dakota  Department  of
Health, 1994). Montana has issued advisories
in the Marais, Milk, Missouri, Clarks Fork of the
Yellowstone and Tongue River watersheds
(U.S.   Environmental  Protection  Agency,
1997a).
   Contamination in wildlife has been studied
in a few areas within the assessment area,
namely the  Cheyenne  River  and the Red
River.  In the Cheyenne River, Hesse et al.
(1975) found elevated mercury levels in fish-
eating birds.  This contamination derived from
historical discharges of mercury used in gold
mining in  the  Black Hills tributaries of the
Cheyenne River.

   A few  studies  investigating the water
quality  of  irrigation  projects  have  been
performed  in  the  Northern  Great Plains.
Greene,  et  al.  (1990)  sampled  aquatic
organisms  in the vicinity of the Angostura
Reservoir  and  irrigation  project  on  the
Cheyenne River.  Levels of selenium in fish
downstream of the  project was two to five
times more than in fish sampled above. Seven
fish (out of nine)  had levels above 10 ug/g
which is above the level suggested to cause
detrimental effects  in  fish  (Greene, et al.
1990).   Samples of  fish and blackbird eggs
had  less than  the  recommended  level of
pesticides  and  fish  had  less than  the
recommended levels of PCBs.

   Roddy, et al. (1991) performed  a similar
study  for  the  Belle  Fourche   project.
Downstream  fish had higher arsenic  and
selenium. The highest selenium value was 5.7
ug/g, which is lower than the 10 ug/g toxic
effects level for whole fish  (Lillebo, et. al,
1988).   Duck livers had selenium values
ranging  from 6.5 to  27.5 ug/g.  Ten ug/g is
considered the threshold of biological effects
for aquatic bird liver samples (Lemly, 1993).

   Goldstein, et al. (1996) sampled fish from
various points in the Red River and found no
differences in concentrations of mercury in the
fish with respect to  the sampling site.   The
authors  point out that this is indicative of a
diffuse atmospheric  source of mercury rather
than large point sources. Sampling of fish
(fillets) in the Red River in 1990 for mercury by
the  Minnesota  Department  of   Natural
Resources found concentrations ranging.from
0.32 ppm to 1.3 ppm (Goldstein,  1995).  Fish
consumption advisories were issued by both
Minnesota and North Dakota based on this
data (Goldstein, 1995).  The levels of total
PCBs have declined in Red River fish, but
were  still  high  enough as of  1993  for
                                                                                  65

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 Chapter 2 - Status of Aquatic Resources
 Minnesota to maintain  a fish consumption
 advisory based on the data (Goldstein, 1995).

    Pesticides are a water quality concern in
 areas of high agricultural activity such as
 portions of the Northern Great Plains. Goolsby,
 et al. (1991) found pesticides in streams in
 Nebraska, North  Dakota, South Dakota and
 other  Midwestern States.   Atrazine  was
 detected the  most often and in the largest
 concentrations. The values for a number of
 pesticides exceeded maximum contaminant
 levels (MCLs) as defined  under the Safe
 Drinking Water Act in about half the samples.
 Pesticides have been detected in the Missouri
 River  and   include  chlordane,   atrazine,
 alachlor, diazinon, dieldrin, DDT, simazine and
 others (U.S. Army Corps of Engineers, 1994).

    Instream samples for pesticides in the Red
 River,  a  large  fraction  has  detectable
 quantities of 2,4-D,  g-HCH  and atrazine
 (Tomes and Brigham, 1994), however, all were
 well below the maximum contaminant levels.
 Brigham et al. (1994) estimated the total load
 of  several pesticides at  various sampling
 points in the Red River basin. The Red River
 itself at Emerson,  Manitoba (where it crosses
 into Canada) had an estimated load of 610
 kilograms of  atrazine,  1400  kilograms of
 bentazon and 280 kilograms of cyanazine.
 These loading values indicated that less than
 1%  of  these  applied  pesticides  were
 transported out of the basin (Brigham, et al.
 1994).

    Nutrient loading to waters in the Northern
 Great Plains  is of concern because of the
 large  agricultural  input    Nitrogen   and
 phosphorus   are  the  two  most  important
 nutrients entering waters. High levels of these
 pollutants stimulate plant growth which can
then deplete  dissolved oxygen.  Impairment
can occur when phosphorus concentrations
exceed  0.05  mg/l in  lakes and 0.1  mg/l in
streams (Huntzinger, 1995).
    Mueller, et al. (1992) reported on surface
water nutrient sampling results from numerous
U.S. Geological Survey National Water-Quality
Assessment  (NAWQA)  Program  studies,
including a study of the Red River Basin and
Central Nebraska Basins. In data from sites
that had drainage areas of greater than 10,000
square miles, nitrates in the Red River were all
less than 1 mg/l, while the Central Nebraska
basins ranged from 0 to 1.8 mg/l. In smaller
areas draining agricultural regions in Central
Nebraska, nitrates reached as high as 3.7
mg/l. Total phosphorus samples for the large
drainage area in the Red River ranged from
0.1 to 0.5 mg/l and Central Nebraska was
similar. In Central Nebraska, total phosphorus
values were as  high as 1.8  mg/l in  areas
draining agricultural regions.

Water Quality of the Missouri River

    According to the  U.S. Army Corps of
Engineers (1994) water quality is generally
good in the mainstem  of the Missouri  River.
However,  there are  some  water  quality
problems. Low dissolved oxygen in reservoirs
is a  problem due to oxygen  demanding
sediments in the mainstem lakes. In addition,
since most of the mainstem  dams release
water from lower depths, the low dissolved
oxygen in the reservoirs can result in low
dissolved  oxygen  releases  downstream.
There  are temperature concerns below the
reservoirs, as well,  since the bottom water is
much colder than  natural conditions.   This
benefits introduced coldwaterfish species, but
is detrimental to the native Missouri River
fishes because it is unsuitable for spawning
and development of warm water fishes (U.S.
Fish and Wildlife Service, 1994).

   The water quality in some  Missouri River
tributaries is at times poor because of nutrients
from runoff, sewage treatment plants, and
pesticides.  In Lake Oahe water entering the
lake has slightly elevated levels of arsenic and

-------
                                                   Northern Great Plains Aquatic Assessment
 mercury.  The mercury problem is limited to
 sediments in the Cheyenne River Arm. The
 source of the  mercury is historical mining
 areas in the Black Hills.  Contaminated fish
 were first noticed in 1973. In Lake Francis
 Case a huge sediment load is received from
 the White River.  This sediment remains in the
 lake and adds total suspended solids to the
 tailwaters of Fort Randall Dam.

 Future Trends

    Agriculture is a large contributor to water
 quality problems in the NGP and will continue
 to be so in the near future.  Most of the effects
 from agriculture  are in the form of nonpoint
 sources, which are difficult to control and there
 are limited  regulatory means for control  of
 them.  Debate is currently ongoing concerning
 any possible changes in the operation of the
 Missouri River dams to improve wildlife habitat
 and water quality and it remains to be seen if
 changes will occur.

    Water  quality improvements,   however,
 have  occurred from implementation of point
 source controls  on  municipal and  industrial
 sources, all of which  are  required to have
 permits to discharge. For the most part these
 sources are as tightly regulated as they will
 likely be in the near future, with the possible
 exception of more ammonia stringent limits for
 municipal  wastewater plants.   With some
 exceptions  (namely,  some   concentrated
 animal feeding operations), in the Northern
 Great  Plains,  point  sources  now  have
 restricted and limited impacts to water quality.
 Most benefits to  be gained in the future will
 result from improvements in nonpoint source
 control  and minimizing   the impacts  of
 hydrologic modifications.

    In  areas where population  growth  is
 occurring,   residential   and  commercial
 development may have water quality effects.
These  changes can increase the number of
 point  sources,  loadings  to present  point
 sources  and more stormwater  runoff from
 construction and from the added roads, streets
 and  parking   lots.     Quicker  runoff  of
 precipitation can also affect the hydrology of
 streams within  the developed area.   In the
 Northern Great Plains, these effects will be
 limited  in  area  compared  to  the  more
 widespread effects of agriculture, but in a local
 area they can be very important.

 2.4 GROUND WATER QUALITY

 Introduction

   The quality of ground water is affected by
 dissolved minerals from surrounding rocks and
 by other pollutants added by human activities.
 Total dissolved solids is an important indicator
 for  assessing the  quality  of ground water.
 Total dissolved solids content can vary widely
 based on hydrogeologic condition.  Ground
water  may also  naturally  contain  other
 constituents such as  sulfates and chlorides
 that may make it unusable.

   There  are  no  federal  rules mandating
 beneficial use classifications for ground water,
 although many states have ground  water
 classification systems and standards based on
 use.    Ground  water  may   have  use
 classifications applied to it, much like surface
water, and the classifications generally reflect
 categories of human uses, such as drinking,
 stock watering  and irrigation.  Table 2.4.1
 presents as an example the ground water
 classification system  used by the State of
 Montana.  The classification is based on the
total dissolved  solids content.   There are
federal standards under the Safe Drinking
Water Act which are referred to as maximum
contaminant levels  (MCLs).    These  are
 enforceable standards set to protect human
 health. MCLs apply at the tap after treatment.

   Human activities that can pollute  ground
                                                                                   67

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Chapter 2 - Status of Aquatic Resources
water include use of agricultural fertilizers and
pesticides,  feedlots,  landfills   and  other
wastesites, unmaintained septic tanks, leaking
underground fuel storage tanks and spills of
toxic substances (Brouchard, et al. 1992).  In
the NGPAA the most important pollutants that
may be found in ground water are  nitrates,
pesticides  and  dissolved solids.   Locally,
ground water is contaminated by toxics from
fuel leakage, toxic spills and hazardous waste
sites.

    The maximum contaminant level for nitrate
is 10 mg/l.  This is  the level  necessary to
protect infants from methemaglobinemia (also
known as blue-baby syndrome).  This is a
problem for infants up to about four months of
age since they lack the necessary enzyme to
reduce the methemoglobin produced by nitrite
converted from high concentrations of nitrate
(Mueller, et al. 1995). A nationwide  analysis
found  that 16% of the nitrate samples from
agricultural areas exceeded the drinking water
standard and that concentrations were highest
within  100 feet of the land surface (Mueller,
1995).

    Pesticides (herbicides, insecticides and
fungicides) are another pollutant of concern to
ground water in the  Northern Great Plains.
There are a number of pesticides with MCLs,
including alachlor (0.002 mg/l), atrazine (0.003
mg/l), 2,4-D (0.07 mg/l) and  2,4,5-T (0.05
mg/l). Most of the MCLs for pesticides are set
for cancer risk, nervous system  damage  or
liver or kidney damage (U.S. Environmental
Protection Agency, 1993). There are MCLs for
other pollutants such as metals and organics,
but most of these  are limited  to  specific
localities in the Northern Great Plains.

Key Findings

•The major aquifer systems located in the
NGPAA include unconsolidated alluvial and
glacial  deposit aquifers, the  High  Plains
aquifer system,  the  Northern  Great Plains
aquifer system  and  Great Plains aquifer
system.
•The High Plains Aquifer generally has very
good water quality in terms of dissolved solids.
•The Great Plains Aquifer has high dissolved
solids in central and southwestern Nebraska.
• Portions of the Northern Great Plains Aquifer
reach extremely high levels of dissolved solids
in North Dakota.
•The greatest number of pesticide  detections
in ground water have occurred in Holt and
Wheeler counties in Nebraska; Potter County
in South Dakota;  Rolette County in  North
Dakota and Teton County in Montana.
•Aquifer vulnerability is greatest in parts of
northeastern Montana, scattered areas in the
Missouri Escarpment in North Dakota as well
as larger  areas  in  Bottineau,  McHenry,
Richland and Ransom counties  in  North
Dakota, much of eastern South Dakota and
areas south of the White River,  southeastern
Wyoming, and throughout most of Nebraska.
•Nitrates are above 3 mg/l in greater than 25%
of sampled wells in  central South  Dakota,
western and north-central Nebraska, eastern
Wyoming and eastern North Dakota.

Data Sources and Methods

   The  information   in this  section  was
obtained from large-scale ground waterreports
by the U.S. Geological Survey,  the report by
the U.S. Environmental Protection  Agency
entitled, Pesticides in Ground Water Database,
which compiled monitoring  information from
1971 to 1991  (U.S, Environmental  Protection
Agency,  1992b), state  305(b) reports and
other reports.

Data  Quality and Gaps

   Large areas in the Northern Great Plains
are missing pesticide monitoring data for wells.
This is not necessarily surprising since where
problems are suspected is where monitoring

-------
                                                 Northern Great Plains Aquatic Assessment
 Table 2.4.1 Montana's Ground water Classification System
 I      Suitable for public and private water supplies. Irrigation use with little or no treatment.
       Specific conductivity of less than 1000 uSiemans/cm at 25°C.

 II      Can be  used for water supply when better supplies are not available.  The primary
       purpose is for irrigation, stock watering and industry. Specific conductivity is between
       1000 and 2500 uSiemans/cm at 25°C.

 Ill     Use is for stock watering and industry.  Specific conductivity is between 2500 and
       15,000 uSiemans/cm at 25°C.

 IV     Use is for industry only.  Specific conductivity is greater than 15,000 uSiemans/cm at
       25°C.
tends to be done (i.e. where there is heavy
pesticide or fertilizer use). Much less ground
water monitoring for pesticides appears to
have been done in the Montana and South
Dakota portions of the NGPAA.

Spatial Patterns

   Wyoming reports that most of its ground
water  is  of  good  quality  (Wyoming
Department of Environmental Quality, 1994),
but some of Wyoming's aquifers within the
NGPAA have naturally high levels of fluoride
and selenium.   Specifically, the area with
high fluoride encompasses eastern Campbell
County, southeastern Johnson County and
northeastern   Natrona   County.     High
selenium was  noted in eastern  Natrona
County.  Of 63 wells sampled in the North
Platte Alluvial Aquifer in Goshen County, 35
were above 10 mg/I for nitrate (Wyoming
Department of Environmental Quality, 1996).
Twenty-four were sampled for pesticides with
none  found  above  the MCLs (although
pesticides were detected in 18 of the wells)
(Wyoming  Department of  Environmental
Quality, 1996).

   South Dakota states that the pollutant
most frequently found in  ground water is
nitrate  (South  Dakota  Department  of
Environment and Natural Resources, 1996).
Two aquifers in South Dakota  within the
NGPAA  were sampled for nitrates and
highlighted in the 1996 305(b) report (South
Dakota  Department  of Environment and
Natural  Resources, 1996).  Six wells were
sampled in the Bowdle Aquifer in Potter,
Wafworth and Edmunds Counties in 1994
and two were found to have samples above
10 mg/I  for nitrate. Similarly, of four wells
sampled in the Delmont Aquifer of Charles
Mix and Douglas Counties (also in 1994), two
had nitrates above 10 mg/I.

   Ground water quality in North Dakota is
reported to  be  generally good  with the
exception of naturally occurring problems in
a few aquifers (North Dakota Department of
Health, 1994).  Monitoring has been done in
the Oakes, Icelandic and Warwick aquifers in
North Dakota (North Dakota Department of
Health,  1994).  Of the total  wells sampled
(137), pesticides were detected in two wells
(1.5%), nitrate was detected in thirty-six wells
(26.3%)  and both pesticides and nitrate were
detected in one well  (0.7%). Eight (5.8%)
wells had nitrate at a level greater than 10
mg/I.

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 Chapter 2 - Status of Aquatic Resources
    A study of water quality in the High Plains
Aquifer in Nebraska was performed in which
wells were sampled for nitrate and atrazine,
a common pesticide  (Druliner, et al. 1996).
Only two  areas  out of six  were in the
NGPAA. These included Box Butte County
in  western   Nebraska  and   an  area
encompassing Holt,  Garfield  and Wheeler
Counties in the northeast. For nitrates in Box
Butte County,  11  wells were  sampled that
ranged from 2.4  to 13  mg/l,  only  one
exceeded the 10 mg/l maximum contaminant
level (MCL) set by the U.S. Environmental
Protection  Agency.  In the Holt, Garfield,
Wheeler area, nitrates ranged from 0.1 to 51
mg/l,  with 30  out of 75  sampled  wells
exceeding 10 mg/l.

    An analysis of nitrate data from the states
in the NGPAA determined the percentages of
sampled wells in each state with more than
10 mg/I nitrate (Madison and Brunett, 1985).
Not all of the wells were necessarily within
the NGPAA boundary.  In Montana, 3.8%
(2821) wells were  above 10  mg/l.   In
Nebraska the figure was 9.3% (2326 wells).
In North Dakota, South Dakota and Wyoming
the figures were 4.6% (7387 wells), 6.7%
(1996  wells)  and  3.8%  (1477 wells),
respectively.

    The distribution of nitrate concentrations
in ground water in the Northern Great Plains
was complied  by Madison  and  Brunett
(1985), as well. For most of the region where
there were more than  five wells per county in
the  database,  fewer  than 25%  of  the
sampled  wells  had  nitrate concentrations
greater than 3 mg/l (considered to be above
background levels).  A few areas, such as
central South Dakota, western and. north-
central Nebraska, parts of eastern Wyoming,
parts of eastern North Dakota and north-
central and south-central Montana show
more than  25% of the sampled wells with
greater than 3 mg/l nitrate.  The rest of the
NGPAA had less than 25% of sampled wells
with greater than 3 mg/l nitrate.  This data,
however,  does  not   represent  random
samples because known problem areas are
sampled more often (Madison and Brunett,
1985).

    The naturally occurring total dissolved
solids concentrations in the Northern Great
Plains Aquifer System was reported by the
U.S. Geological Survey (1996). In the lower
Paleozoic portions of  this aquifer system,
water with less than 3000 mg/l dissolved
solids only occurs in the Big Horn Mountains
area and  from the Black  Hills eastward to
central  South  Dakota  (U.S. Geological
Survey, 1996a). Throughout much of North
Dakota, the lower Paleozoic aquifers contain
total dissolved solids in excess of  100,000
mg/l.  In the lower Cretaceous (Inyan Kara
aquifer) part of this system, water with less
than 3000 mg/l dissolved solids occurs only
near the recharge zones  (U.S. Geological
Survey, 1996a). In North Dakota this aquifer
has dissolved solids mostly between 3000
and 10,000 mg/l.   The upper Cretaceous
aquifers (Hell Creek/Fox Hills), by contrast,
are less than 3000 mg/l in  most of its range,
with the  exception of a small  area  in
Bottineau  and McHenry Counties  in  North
Dakota  (U.S.  Geological  Survey,  1996a).
The median total  dissolved solids ranges
from  910 mg/l in Montana to  1060 mg/l in
North  Dakota  (U.S.  Geological  Survey,
1988).   Seventy-five  percent  of nitrate
samples were less  than 1.5  mg/l and
selenium concentrations in 18% of  samples
exceeded 2.4 mg/l (U.S. Geological Survey,
1988).  The  Fort Union aquifer (Lower
Tertiary) has a median total dissolved solids
concentration of 1600 mg/l in Montana and
about 1100  mg/l  in Wyoming.   Naturally
occurring selenium is 50 to 600 ug/i in some
areas (U.S. Geological Survey, 1988).

    In the Great  Plains  Aquifer  System,
70

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                                                  Northern Great Plains Aquatic Assessment
 specifically the Maha Aquifer, total dissolved
 solids are less than 5000 mg/1 over much of
 Nebraska, but reach very high levels in
 central  and southwestern Nebraska  (U.S.
 Geological  Survey,  In  Press).   Thomas
 County has levels of between 20,000 and
 50,000 mg/i, while an area including portions
 of  Garden  and Merrill  Counties  reaches
 levels greater  than 120,000 mg/l  (U.S.
 Geological Survey, In Press).

    The High Plains Aquifer System (which
 includes the Ogallala Aquifer) generally has
 very good water quality.  Under the Sand
 Hills this system has total dissolved solids
 concentrations of less than 250 mg/l and is
 generally below 1000 mg/l where it exists in
 Nebraska.  In South Dakota and Wyoming
 the quality of the water from the High Plains
 Aquifer  is suitable for most uses nearly
 everywhere  it occurs, although there are
 some local total dissolved solids readings of
 more than 500 mg/l (U.S. Geological Survey,
 1996a).  Selenium is a problem in some
 areas where the aquifer overlies Pierre Shale
 (U.S. Geological  Survey, 1996a).   The.
 median selenium in Wyoming was 8  ug/l
 (U.S. Geological Survey,  1988).

    In the  unconsolidated aquifers in North
 Dakota, sampling  showed  that they  are
 generally  less  than the  MCL for  total
 dissolved solids and nitrates, with some local
 exceedances for nitrates (U.S. Geological
 Survey, 1988). Arsenic exceeds 50 ug/l in an
 area  greater than  170 square miles in
 southeastern North Dakota.   Alluvial and
 glacial aquifers  in Montana had a  median
 total dissolved  solids  of concentration of
 2000 mg/l (U.S. Geological Survey, 1988). In
the glacial drift/ally vial aquifers in South
 Dakota, 75% of samples exceeded the MCL
for total dissolved solids, with a median of
670 mg/l and in the alluvial valley fill aquifers
in Wyoming, 75%  of samples had  a total
dissolved solids concentration of less than
 760 mg/I (U.S. Geological Survey, 1988).

    Figure 2.4.1 presents the results of over
 20 years of sampling compiled by the U.S.
 Environmental Protection Agency (1992b) for
 pesticides.  Pesticides were detected most
 commonly in Holt and Wheeler counties in
 Nebraska; Potter County in South Dakota;
 Rolette County in North Dakota and Teton
 County in  Montana.   Low numbers  of
 detections   were  recorded  in  eastern.
 southern and western North Dakota,  the
 Sand  Hills  of  Nebraska  and  parts  of
 northeastern Wyoming. Pesticides detected
 in the NGPAA counties included 2,4-D, 1,2-
 D,  aldicarb  sulfone,  aldicarb  sulfoxide,
 atrazine,   dicamba,  MCPA,   picloram,
 simazine, alachlor, ethyl parathion, methyl
 parathion,   cyanizine,   fonofos,  dieldrin,
 propachlor and metolachlor.  None of the
 pesticides detected in Northern Great Plains
 counties were above the  MCLs,  with  the
 exception of one sample each from Wheeler
 and Holt Counties in Nebraska.   Wheeler
 County had  one aldicarb sample  at 3 ug/l
 and Holt County had one atrazine sample at
 22.7 ug/l.

    In  more  recent data,  atrazine   was
 sampled in ten wells in Box Butte County
 (Druliner, et  al.  1996) and was detected in
 two, with a high value of 0.7 ug/l.  In Holt,
 Garfield and Wheeler counties,  forty-two
wells were  sampled  and  atrazine   was
 detected in twenty-five of them, with a high of
 1.8 ug/l. The MCL for atrazine is 3.0 ug/l.

    Tomes and Brigham (1994) reported that
the majority of pesticide analyses for ground
water in the Red River basin were not above
 laboratory reporting limits and were usually
 below MCLs. The wells with reportable levels
were  mainly   in   the  southern   and
 southeastern part of the basin and atrazine
was the most commonly found pesticide.
                                                                                  71

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                                                                                             Pesticide Detections
                                                                                                  No Data

                                                                                                  °
                                                                                                  1 -5

                                                                                                  6-15
                                                                                                  16-20
Figure 2.4.1 Pesticide Detections in Ground Water Wells in the Northern Great Plains

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                                                  Northern Great Plains Aquatic Assessment
    The  U.S.  Environmental  Protection
 Agency (1991) published a report assessing
 the vulnerability of aquifers to contamination
 throughout the United States on a state-by-
 state basis.  For Nebraska, essentially all of
 the  area within the  NGPAA  is rated as
 vulnerable  due  to  the predominance of
 unconsolidated  and  semiconsolidated
 deposits.    However, the  likelihood  of
 contamination was rated low due to the low
 population density. Population density alone
 is not a good predictor  of  vulnerability,
 however, since agricultural areas with low
 populations may contaminate aquifers. For
 the part of Montana within the NGPAA, most
 was rated as moderate to  low vulnerability,
 except for areas along rivers and portions of
 northeastern  Montana in  Daniels,  Valley,
 Roosevelt,  Blaine and Dawson Counties.
 Most of North Dakota is rated as moderate to
 low  vulnerability.   The areas with high
 vulnerability  include river areas, scattered
 areas along the Missouri Escarpment and
 larger areas within  Bottineau, McHenry,
 Richland and  Ransom Counties.   The
 Sheyenne National Grassland is within a high
 vulnerability  area.  Most of western South
 Dakota has  moderate to low  vulnerability,
 except for river areas and much of the area
 south of the White River.  Much of eastern
 South Dakota east of the Missouri is rated as
 high vulnerability, although  it is a mosaic of
 high and low. As for the Wyoming portion of
 the NGPAA,  northeast Wyoming is rated
 moderate  to low in  vulnerability, while
 southeastern  Wyoming   is  rated  high
 (southeastern Converse, southern Niobrara
 and  almost all   of  Platte and Goshen
 Counties).

 Future Trends

   The natural causes of poor quality ground
water will, of course, always  be a problem. In
the  Northern Great  Plains,  aside  from
localized ground water impacts from sites
 such as landfills and underground storage
 tanks, most impacts to ground water will
 come from  agricultural  uses.    Confined
 animal feeding operations and  the  use of
 pesticides and nitrogen fertilizer on cropland
 are  the  primary sources of ground water
 contamination in this region.

   The use of nitrogen fertilizers has grown
 considerably since the end of World  War II,
 but has leveled off.  Table 2.4.2 shows the
 changes in amounts of nitrogen fertilizer
 used through four decades  in the top ten
 counties within the NGPAA in terms of use in
 1985.  In addition to the increased amounts
 of nitrogen fertilizer used, the percentage of
 nitrogen in fertilizer has increased from 6.1 to
 20.4% during the  period 1950  to 1970
 (Madison and Brunett, 1985).

   The future impacts to the ground water
 resources in the most vulnerable areas will
 depend upon any  changes in land  use in
 those areas.  For  example the  vulnerable
 areas  under the  Sand Hills  are   not
 considered to be threatened because great
 changes in land use are not expected.  This
 may not be true for all vulnerable aquifers in
the NGPAA.

2.5 AQUATIC SPECIES

 Introduction

   Biodiversity is the variety of  life and its
 processes  and it  includes the variety of
organisms, the genetic differences among
them and the communities and ecosystems
in which they occur (The Keystone Center,
 1991). An actual assessment of  biodiversity
includes  examining  the, links  between
species, not just enumerating the species.
 However, since other portions of this report
will look at the functioning of the aquatic
systems of the Northern Great  Plains,  this
section will deal only with the aquatic species
                                                                                   73

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 Chapter 2 - Status of Aquatic Resources
Table 2.4.2 Trends in Nitrogen Fertilizer Use for the Top Ten Counties in the NGPAA. in pounds
County
Cass, ND
Ouster, NE
Lincoln, NE
Richland, ND
Antelope, NE
Knox, NE
Grand Forks, ND
Cavalier, ND
Boone, NE
1945
5390
4961
4939
3873
5916
4196
4184
3069
4306
1955
281600
843937
840058
202337
1006409
713649
218620
160341
732385
1965
1654264
3484064
3468052
1188632
4154808
2946191
1284285
941925
3023538
1975
8614776
7441282
7407083
6189944
8873860
6292489
6688065
4905186
6457688
1985
16126220
14302790
14078070
13109990
12930340
12586210
12568250
11650150
11478190
richness of the plains.

    The information presented in this and the
following section is weighted heavily toward
fishes, since the best information available is
for this group.

Key Findings

•There are fewer endemic fish species in the
NGPAA than in many other areas due to low
topographic relief and the recent origin of the
plains.
•The Missouri  River has  138  native fish
species and 35 introduced fish species.
•With a few exceptions, the  fish  species
diversity increases from west to east
•There are 75 fish  species  in the Red River
basin, only 51  of which  exist  on the North
Dakota side.
•Three typical fish  habitats  are found in the
NGPAA.   These are  large  streams with
variable flow, a sandy substrate and  high
levels of turbidity and dissolved solids; prairie
ponds, marshes and small  streams that are
clear and relatively stable; and residual pools
of highly intermittent streams.
•The NGPAA  has  low  aquatic  -mollusk
diversity. Most of the mollusk species found
here overlap from nearby regions. Diversity is
highest in the eastern portions.
Spatial Patterns

    There are fewer endemic species in the
Great  Plains than in other areas  due to its
recent origin and general lack of physical
barriers (Ostlie, et al. 1997). The only areas
within the Great Plains with a relatively high
degree of endemism are found outside the
NGPAA in areas such as the Hill Country of
Texas  and the  Black Hills  of South Dakota
(Ostlie, et al. 1997). Of approximately 250 fish
species  found in the  Great Plains  area
assessed in The Nature Conservancy Report,
A  Status of Biodiversity in the Great Plains,
only 34 (14%) are endemic (a smaller set of
these actually occur in the Northern Great
Plains).

    The increase  in rainfall on the Northern
Great Plains from west to east influences the
physical characteristics of the waterbodies and
therefore, the fauna that can be supported.
Aquatic vertebrate and invertebrate diversity
generally  increases from west  to  east,
however, a few minnow and killifish species
become  increasingly  dominant  westward
(Cross and Moss, 1987) and most of the fish
species in the Great  Plains are native to
eastern North America  (Ostlie, et al. 1997).
The Missouri River stands out with a large
number of species even in the west because
of its larger flow.
74

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                                                  Northern Great Plains Aquatic Assessment
    The NGPAA is drained by two major river
systems.  These are the Missouri, flowing to
the Mississippi and the Red River of the North
flowing to Hudson Bay.  These two systems
are  in the Mississippi and Hudson  Bay
zoogeographic provinces, respectively.

    The Mississippi Province (of which only the
western part is  in the Northern Great Plains)
contains  all  of  the   Mississippi-Missouri
drainage and is the richest province in North
America in obligatory freshwater fishes with
280 to 300 species (Moyle and Cech,  1982).
The majority of these (88%) are freshwater
dispersants,  incapable  of  traveling   long
distances in salt water. This high percentage
indicates that this is an  ancient drainage
(Moyle  and Cech, 1982).   The  Mississippi
province is important in North America as a
center  of fish  evolution  (indicated  by the
abundance of families such as Centrarchidae,
Percidae and Cyprinidae), as a refuge  during
times of glaciation from which species have
been able to reoccupy waters they were forced
to vacate (most of the species found in the
Hudson Bay Province are also characteristic of
the northern parts of the Mississippi Province)
and as a refuge for representatives of past fish
faunas (evidenced by presence of relicts such
as  sturgeons and paddlefish) (Moyle  and
Cech, 1982).

   The western Mississippi drainage has 27
resident native  families and 235  resident
native  species (Moyle and Cech, 1982). In
order,  among native  fishes,  the Cyprinidae,
Percidae, Catostomidae and Ictaluridae are
the most diverse (collectively they make up
about 70% of the fauna) and the Cyprinidae
and Percidae alone contribute more than 50%
of the species.  The Missouri River itself has
138  native fish  species.  However,  when
introduced species are included, the total is
173. Nineteen percent of the Missouri River
fish species are  introduced.
    The Hudson Bay Province includes most of
central Canada and the portion of the United
States drained by the Red and Souris Rivers.
The fish fauna shows a strong affinity with the
Mississippi  River  basin,   particularly  in
freshwater dispersants (Moyle  and Cech,
1982). Most of these freshwater dispersants
occur in the southern edges of the drainage
(which is the Red and Souris Rivers). There is
some divergence between the Red and Souris
Rivers, however. There are 29 fish species in
the Red that do not occur in the Souris (Moyle
and Cech, 1982).  Underbill (1989) presents
evidence that the major source of fish species
to  the  Red  River  basin  was  through a
connection to the Mississippi drainage. Of the
75 native species in the Red River, 73 of them
are in common with the Mississippi drainage.
These 75 species are not evenly distributed in
the Red River basin, however, since 51 occur
in the North Dakota drainages and 71 on the
Minnesota side (Goldstein, 1995).

   According to Cross and Moss (1987) there
are three  fish habitats typical of the Great
Plains: large streams with  variable flow, a
sandy substrate and high levels of turbidity
and dissolved solids; prairie ponds, marshes
and small streams that are clear and relatively
stable; and residual pools of highly intermittent
streams. The larger, turbid Great Plains rivers
contain  the only unique fish  species in the
region (Ostlie, et al. 1997, Cross and Moss,
1987). Examples include the pallid sturgeon,
sturgeon chub, sicklefin chub, western silvery
minnow,  plains minnow,  goldeye, flathead
chub and plains killifish. Examples of Great
Plains fishes  whose habitat  includes clear,
small  streams, ponds and marshes  fed  by
springs  are the topeka  shiner  and plains
topminnow (Ostlie, et al. 1997).

   Within the entire prairie region 90 species
of reptiles and 34 species of amphibians occur
and the numbers of these decrease from east
to west and south to north as well (Com and
                                                                                   75

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 Chapter 2 - Status of Aquatic Resources

 Peterson, 1996). Salamanders are especially
 under represented with only 5 species.  Only
 ten  species  of herptiles  (8  reptile  and  2
 amphibian) are considered endemic to the
 prairie (Com and Peterson,  1996).

    With respect to aquatic invertebrates, the
 mollusks of the Great Plains are essentially
 species that originated in the eastern, boreal
 and Rocky Mountain regions  (Ostlie, et al.
 1997). Freshwater mussels are most diverse
 in the southeastern  United States and the
 diversity decreases significantly in the Great
 Plains.  The Missouri River and  many of its
 tributaries are not good habitat for mollusks
 due to the sediment load. In the NGPAA, most
 of the mollusk species are found in the eastern
 portions of North Dakota, South  Dakota and
 Nebraska.

    Table  2.5.1 lists  ail  of  the fish species
 known or expected to occur in the NGPAA.
 Table  2.5.2  lists    the  aquatic-dependent
 reptiles and amphibians of the NGPAA.

 2.6 THREATENED, ENDANGERED AND
 SPECIAL CONCERN AQUATIC SPECIES

 Introduction

    Threatened and endangered species are
 those that have been listed by the U.S. Fish
 and Wildlife Service  under the Endangered
 Species Act.    Endangered means that the
 species is in danger of extinction throughout
 all  or a  significant  portion  of its  range.
 Threatened means any species which is likely
 to become an endangered species within the
 foreseeable   future  throughout  all  or   a
 significant portion  of its  range.   The term
 "species"  includes-any subspecies-of  fish,
wildlife or  plants, and any distinct population
segment of any species of vertebrate fish or
wildlife which interbreeds when  mature.

   In addition to listed species, the U.S. Fish
and Wildlife Service keeps a list of species
with the potential to be added  to  the list,
known as candidates.  Formerly  there were
three lists, however, this has been  recently
modified such that there is now only one
candidate  list  -  those  where  sufficient
information exists to list, but the process .to do
so has not yet been completed  or  other
species have a higher priority.

    In  addition to  the  federally  designated
endangered,  threatened  and  candidate
species, this  Assessment  also examines
special concern species.  This term includes
candidates for  listing,  those proposed  for
listing and those ranked as G1, G2, or G3 by
state natural heritage programs and  The
Nature  Conservancy.  The rankings in this
system (Ostiie, et al. 1997) are as follows:

    G1  - critically imperiled;  extremely rare,
    occurring in five places or less or is highly
    vulnerable to extinction,

    G2 - imperiled; occurs in 6-20 places or is
    vulnerable to extinction,

    G3 - rare; locally abundant, but occurs in
    only 21-100 locations or is vulnerable to
    range-wide extinction,

    G4 - apparently secure, and

    G5 - demonstrably  secure; no apparent
    risk.

    Most of the focus in this report has been
on those aquatic species that are federally-
listed or are ranked G1-G3 (TE&SC), however,
there are additional aquatic species that are
listed by individual States  as  endangered,
threatened or of special concern.  These are
considered separately in this assessment.
76

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                                               Northern Great Plains Aquatic Assessment
 Table 2.5.1 Fish Species Reported to Occur in the Northern Great Plains Assessment Area.
 Scientific Name
 Common Name
 Occurrence
Alosa chrysochloris
Ambloplites rupestris
Amia calva
Anguilla rostrata
Aplodinotus grunniens
Campostoma anomalum
Carassius auratus
Carpiodes carpio
Carpiodes cyprinus
Carpiodes velifer
Catostomus catastomus
Catostomus commersoni
Catostomus platyrhynchus
Coregonus clupeaformis
Coitus bairdii
Couesius plumbeus
Ctenopharyngodon idella
Culea inconstans
Cyprinella spiloptera
Cyprinus carpio
Dorosoma cepedianum
Esox americanus vermiculatus
Esox lucius
Esox masquinongy
Etheostoma exile
Etheostoma nigrum
Etheostoma spectibile
Fundulus diaphanus
Fundulus sciadicus
Fundulus zebrinus
Hiodon alosoides
Hiodon tergisus
Hybognathus hankinsoni
Hybognathus placitus
Hybopsis aestivalis
Hybopsis argyritis
Hypentelium nigricans
Ichthyomyzon castaneus
Ichthyomyzon unicuspis
Ictalurus furcatus
Ictalurus me/as
Ictalurus natalis
 Skipjack Herring
 Rock Bass
 Bowfin
 American Eel
 Freshwater Drum
 Central Stoneroller
 Goldfish
 River Carpsucker
 Quillback
 Highfin Carpsucker
 Longnose Sucker
 White Sucker
 Mountain Sucker
 Lake Whitefish
 Mottled Sculpin
 Lake Chub
 Grass Carp
 Brook Stickleback
 Spotfin Shiner
 Common Carp
 Gizzard Shad
 Grass Pickerel
 Northern Pike
 Muskellunge
 Iowa Darter
 Johnny Darter
 Plains Orangethroat Darter
 Banded Killifish
 Plains Topminnow
 Plains Killifish
 Goldeye
 Mooneye
 Brassy Minnow
 Plains Minnow
 Speckled Chub
Western Silvery Minnow
 Northern Hog Sucker
 Chestnut Lamprey
 Silver Lamprey'
 Blue catfish
 Black Bullhead
Yellow Bullhead
 NE, ND, SD
 ND, SD
 ND
 NE, SD
 MT, NE, ND,
 NE, ND, SD,
 MT, NE, ND,
 MT, NE, ND,
 NE, SD, WY
 NE, SD
 MT, NE, ND,
 MT, NE, ND,
 MT, NE, ND,
 ND
 MT
 MT, NE, ND,
 MT, NE, ND,
 MT, NE, ND,
 NE, ND, SD
 MT, NE, ND,
 NE, ND, SD
 NE.SD
MT, NE, ND,
 ND.SD
MT, NE, ND,
MT, NE, ND,
NE.WY
NE, ND, SD
NE, SD, WY
MT, NE, SD,
MT, NE, ND,
 NE, ND, SD
MT, NE, ND,
MT, NE, ND,
 NE
MT, NE, ND,
SD
 NE.ND
NE, SD
NE, SD
MT, NE, ND,
NE, ND, SD
SD
WY
SD.WY
SD, WY
SD.WY
SD.WY
SD, WY
SD.WY
SD, WY
SD

SD, WY
SD, WY

SD, WY
SD, WY
WY
SD, WY

SD.WY
SD, WY

SD, WY
SD.WY
                                                                              77

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 Chapter 2 - Status of Aquatic Resources
 Table 2.5.1 continued Fish Species Reported to Occur in the Northern Great Plains Assessment
 Area.
 Scientific Name
 Common Name
Occurrence
 Ictalurus nebulosus
 Ictalurus punctatus
 Ictiobus cyprinellus
 Ictiobus niger
 Lepisosteus osseus
 Lepisosteus platostomus
 Lepomis cyanellus
 Lepomis gibbosus
 Lepomis humilis
 Lepomis macrochirus
 Lepomis megalotis
 Lota lota
 Luxilus comutus
 Macrhybopsis gracilis
 Macrhybopsis storeiana
 Micropterus dolomieui
 Micropterus salmoides
 Morone chrysops
 Morone saxatilis
 Moxostoma anisunim
 Moxostoma erythurum
 Moxostoma macrolepidotum
 Moxostoma valenciennesi
 Nocomis biguttatus
 Notemigonus crysoleucas
 Noturus flavus
 Noturus gyrinus
 Notropis atherinoides
 Notropis blennius
 Notropis dorsalis
 Notropis heterolepis
 Notropis hudsonius
 Notropis lutrensis
 Notropis rubellus
 Notropis shumardi
 Notropis volucellus
 Notropsis stramineus
 Oncorhynchus clarid
 Oncorhynchus mykiss
 Oncorhynchus nerka
 Brown Bullhead
 Channel Catfish
 Bigmouth Buffalo
 Black Buffalo
 Longnose Gar
 Shortnose Gar
 Green Sunfish
 Pumpkinseed
 Orangespotted Sunfish
. Bluegill
 Longear Sunfish
 Burbot
 Common Shiner
 Flathead Chub
 Silver Chub
 Smallmouth Bass
 Largemouth Bass
 White Bass
 Striped Bass
 Silver Redhorse
 Golden Redhorse
 Shorthead Redhorse
 Greater Redhorse
 Homyhead Chub
 Golden Shiner
 Stonecat
 Tadpole Madtom
 Emerald Shiner
 River Shiner
 Bigmouth Shiner
 Blacknose Shiner
 Spottail Shiner
 Red Shiner
 Rosyface Shiner
 Silverband Shiner
 Mimic Shiner
 Sand Shiner
 Cutthroat trout
 Rainbow Trout
 Kokanee Salmon
ND.SD
MT, NE, ND,
MT, NE, ND,
NE, SD
NE, ND, SD
MT, NE, ND,
NE, SD, WY
ND, SD
NE, ND, SD
NE, ND, SD
ND
MT, NE, ND,
NE, ND, SD,
MT, NE, ND,
NE, ND, SD
ND, SD
MT, NE, ND,
NE, ND, SD
NE
ND
ND.SD
MT, NE, ND,
ND
NE, ND, SD,
MT, NE, ND,
MT, NE, ND,
NE, ND, SD
MT, NE, ND,
NE, ND, SD
NE, ND, SD,
NE, ND, SD
MT, NE, ND,
NE, SD, WY
ND, SD
NE, SD
ND
MT, NE, ND,
MT.WY  -
MT, NE, ND,
MT
SD.WY
SD
SD
SD.WY
WY
SD.WY
SD, WY
SD, WY

WY
SD, WY
SD, WY

SD

WY

SD
SD, WY

SD.WY
78

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                                               Northern Great Plains Aquatic Assessment
 Table 2.5.1 continued Fish Species Reported to Occur in the Northern Great Plains Assessment
 Area.
 Scientific Name
 Common Name
Occurrence
Perca flavescens
Percina caprodes
Percina maculata
Percina phoxocephala
Percina shumardi
Percopsis omiscomaycus
Phenacobius mirabilis
Phoxinus eos
Phoxinus neogaeus
Pimephales notatus
Pimephales promelas
Pimephales vigilax
Polydon spathula
Pomoxis annularis     *
Pomoxis nigromaculatus
Prosopium williamsoni
Pungitius pungitius
Pylodictis olivaris
Rhinichthys atratulus
Rhinichthys cataractae
Salmo trutta
Salvelinus fontinalis
Salvelinus namaycush
Scaphirhynchus platorynchus
Semotilus atromaculatus
Semotilus margarita
Stizostedion canadense
Stizostedion lucioperca
Stizostedion vitreum
Umbra limi
Yellow Perch
Logperch
Blackside Darter
Slenderhead Darter
River Darter
Trout-perch
Suckermouth Minnow
Northern Redbelly Dace
Finescale Dace
Bluntnose Minnow
Fathead Minnow
Bullhead Minnow
Paddlefish
White Crappie
Black Crappie
Mountain Whitefish
Ninespine Stickleback
Flathead Catfish
Blacknose Dace
Longnose Dace
Brown*Trout
Brook Trout
Lake Trout
Shovelnose Sturgeon
Creek Chub
Pearl Dace
Sauger
Zander
Walleye
Central Mudminnow
MT, NE, ND, SD, WY
ND, SD
NE, ND, SD
SD
ND
MT, NE, ND, SD
NE, SD, WY
MT, NE, ND, SD
MT, NE, ND, SD, WY
NE, ND, SD
MT, NE, ND, SD, WY
NE, SD
MT, NE, ND, SD
MT, NE, ND, SD, WY
NE, ND, SD
MT
ND
NE, ND, SD
NE, ND, SD
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
MT, NE, ND. SD, WY
MT, NE, ND, SD, WY
ND, more?
MT, NE, ND, SD, WY
NE.SD
Sources: Lee, et. al., 1980; Page and Burr, 1991; North Dakota Game and Fish Department, 1994
                                                                              79

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 Chapter 2 - Status of Aquatic Resources
 Table 2.5.2 Amphibian and Reptile Aquatic Species Reported to Occur in the Northern Great
 Plains Assessment Area.
 Scientific Name
Common Name
Occurrence
 Acris crepftanus
 Ambystoma tigrinum
 Chelydra serpentina
 Chrysemys picta belli
 Emydoidea blandingii
 Graptemys pseudogeographica
 Hyla chrysoscelis
 Hyla versicolor
 Kinostemon flavescens
 Nectums maculosus
 Pseudacris triseriata
 Rana blairi
 Rana catasbeiana
 Rana pipiens
 Rana sylvatica
 Trionyx muticus
 Trionyx spinifenvs	
Northern Cricket Frog
Tiger Salamander
Snapping Turtle
Western Painted Turtle
Blanding's Turtle
False Map Turtle
Cope's Gray Treefrog
Common Gray Treefrog
Yellow Mud Turtle
Mudpuppy
Boreal Chorus Frog
Plains Leopard Frog
Bullfrog
Northern Leopard Frog
Wood Frog
Smooth Softshell
Spiny Softshell	
NE.SD
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
NE, SD
NE, ND, SD
ND.SD
ND, SD
NE
ND
MT, NE, ND, SD, WY
NE, SD
MT, NE, ND, SD, WY
MT, NE, ND, SD, WY
ND, SD
NE, ND, SD
MT, NE, SD
Sources: Freeman, 1990; Holberg and Cause, 1992; Behlerand King, 1979
Key Findings

•There are 18 TE&SC aquatic species within
the Northern Great Plains Assessment Area.
Of these, 7 are fish and 11 are mollusks.
•There are no aquatic species listed as
federally threatened. There are 3 federally
endangered species, 1  fish (pallid sturgeon)
and 2  mollusks (winged mapleleaf and fat
pocketbook).    An  additional species  is
proposed  to   be  federally  listed   as
endangered (topeka shiner).
•There are 3 federal candidate species, all of
which are fish (sturgeon chub, sicklefin chub,
and topeka shiner).
•There are 12 species  which are  of special
concern that are not listed as endangered,
threatened or candidates (global rank of G3
or lower).
•There is 1 bird species listed as endangered
(least tern) and  1 listed as threatened (piping
             plover).  These, are listed as a  result of
             changes in the hydrology of the Missouri
             River.
             •In addition to the endangered and special
             concern species listed here,  there are 11
             fish and three herptile species listed by the
             various states in the NGPAA as threatened,
             endangered or of special concern.
             •The watersheds with the greatest number of
             endangered and special concern fish species
             are the Lower James, the Upper James and
             the Lewis and Clark Lake stretch  of the
             Missouri River.
             •The Lower Yellowstone, the Lower Tongue,
             Lake   Sakakawea   and  the  Fort  Peck
             Reservoir reach of the  Missouri  River are
             also important areas for special concern fish
             species.
             •The Western Glaciated Plains contain the
             largest number of endangered and special
             concern fish species.
80

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                                                  Northern Great Plains Aquatic Assessment
 •The distribution of the pallid sturgeon, the
 only presently federally-listed fish species in
 the  NGPAA  is the Missouri  River, lower
 Yellowstone, lower Powder and lower James
 Rivers.
 •The overall  diversity of special  concern
 species by ecological province 0.004 - 0.007
 per  10,000 hectares.  By comparison, the
 Black Hills ecological province has 0.063 per
 10,000 hectares.
 •The Platte, Niobrara, Missouri, Yellowstone,
 and  Lower Cheyenne Rivers and the Sand
 Hills stand out as areas of high amounts of
 occurrences  of  federally-listed  species
 (includes  all  species,  not  only fish and
 aquatics).
                       v
 Data Sources

   The   information   on   endangered,
 threatened and  special  concern  aquatic
 species  was  provided  by state  natural
 heritage  programs,  the  Northern  Prairie
 Wildlife Research Center and the Biological
 Resources  Division  (BRD)  of the  U.S.
 Geological  Survey.   The  BRD obtained
 information on species locations through a
 research of literature. Lists of species from
 the U.S. Fish and Wildlife Service were also
 used.

 Data Quality and Gaps

   While some  of the  records  on fish
 occurrences were old, most are recent. More
 than two-thirds of the fish data is from 1980
 or later, and more than 40% of the data is
 from 1990 or later. The age of the data for
 mollusks and  herptiles was as least as
 recent. However, there was a significant lack
 of good locational data on rare  mollusks in
the Northern Great Plains.  The list used in
this assessment includes all species that may
 be within the NGPAA, even though locations
have not been verified.
Spatial Patterns

    Table  2.6.1   lists   the  threatened,
endangered and  special  concern aquatic
species of the  NGPAA.  As stated above
these are  aquatic species that  are listed
federally or are categorized as G1, G2 or G3.

    Figure 2.6.1 presents the distribution of
endangered and special concern fish species
by watershed.  Obvious patterns stand out.
It can  be seen that  most of the special
concern fish species are connected at least
to some extent  to the Missouri and James
Rivers.  By far the watersheds with the most
special concern fish species are the Lower
James,  the Lower Missouri and the Upper
James.  These watersheds have as many as
five special concern fish species. The Upper
Missouri, Lake Sakakawea, Lower Powder
and  Lower Yellowstone fall in  the next
category as having either two or three special
concern  species.   A  similar  pattern  is
revealed when  the  number  of  special
concern species is matched with ecoregions
of the Northern Great Plains.

   As  seen in  Figure 2.6.2, the  Western
Glaciated Plains have the most fish species
at risk with six The Northeastern Glaciated
Plains, the  North-Central Great Plains and
the Northern Glaciated Plains are close
behind.  The least number of special concern
species  are  in   the  watersheds  and
ecoregions of the Red River Valley, northern
Montana and Nebraska Sand Hills. It needs
to be  investigated  as  to  whether these
patterns are due to variations in the numbers
of endemic species or variations in impacts.

   Figures  2.6.3 through 2.6.9  present
individual distributions for the seven special
concern fish species. Again, the strong ties
to the  Missouri  and James  Rivers  are
evident.
                                                                                  81

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 Chapter 2 - Status of Aquatic Resources
 Table 2.6.1 Threatened, endangered, and special concern (TE&SC) aquatic species occurring
 within the Northern Great Plains Assessment Area. These species are either federally listed as
 endangered (E), candidate (C), or globally ranked as G1, G2 or G3 by The Nature Conservancy.
 Scientific Name
Common Name
Global
Rank
Federal
 Rank
 Fish .
   Acipenser fulvescens
   Macrhybopsis gelida
   Macrhybopsis meeki
   Moxostoma valenciennesi
   Notropis anogenus
   Notropis topeka
   Scaphirhynchus albus
 Mollusks
   Alasmidonta marginata
   Arcidens confnagosus
   Cyprogenia aberti
   Lampsilis higginsii
   Leptodea leptodon
   Plethobasus cyphyus
   Pleurobema sintoxia
   Potamilus capax
   Quadnila fragosa
   Quadrula metanevra
   Venustaconcha ellipsifomnis
Lake Sturgeon            G3
Sturgeon Chub            G2
Sicklefm Chub            G3
Greater Redhorse         G3
Pugnose Shiner           G3
Topeka Shiner            G3
Pallid Sturgeon            G1G2

Elktoe                    G3G4
Rock-pocketbook          G3
Western Fan-shell         G2
Higgins Eye               G1
Scaleshell                G1G2
Bullhead (Sheepnose)      G3
Round Pigtoe             G3G4
Fat Pocketbook            G1
Winged Mapleleaf         G1
Monkeyface               G3
Ellipse   	G3
               C
               C
               C(PE)
               E
               E
               E
   The pallid sturgeon is presently the most
imperiled fish species (if not of all aquatic
species) in the Northern Great Plains. It is a
bottom dweller and is found in areas with a
strong current and firm sand bottom in the
main channel of large turbid rivers (Ashton
and Dowd, 1991).  In the Northern Great
Plains this mainly means the Missouri River
with some occurrences in the lower James,
Lower Yellowstone  and   Lower  Powder
Rivers. The pallid sturgeon is slow-growing
and late maturing and feeds on small fish
and immature aquatic insects (Ashton and
Dowd, 1991). There has been no successful
reproduction documented in recent years
(Ashton and Dowd, 1991).  Reasons for the
fish's decline include blockage of migration
             patterns by dams, alteration of temperature
             regimes below dams and reduced spawning
             habitat due to changes in flow regimes (U.S.
             Fish and Wildlife Service, 1995; Ashton and
             Dowd, 1991).

                The topeka shiner is presently proposed
             to be listed as an endangered species. It
             occurs in the James River (from mouth up
             into North Dakota), the Vermillion, the Lewis
             and Clark Lake region of the Missouri River
             and in the Upper North  Loup River in
             Nebraska.   It  prefers habitats of  small,
             headwater prairie streams with good water
             quality and cool temperatures. The topeka
             shiner's decline is most likely attributable to
             nutrient and sediment loading to  streams
82

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                                                                                           0
                                                                                           1
                                                                                           2-3
                                                                                           4-5
Figure 2.6.1 Number of Endangered and Special Concern Fish Species Per Watershed

-------
                                                                                             2
                                                                                             3
                                                                                             4-5
                                                                                             6
Figure 2.6.2 Number of Endangered and Special Concern Species Per Ecoregion

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Figure 2.6.3 Pallid Sturgeon Occurrence in the Northern Great Plains

-------
Figure 2.6.4 Topeka Shiner Occurrence in the Northern Great Plains

-------
Figure 2.6.5 Sicklefin Chub Occurrence in the Northern Great Plains

-------
Figure 2.6.6 Sturgeon Chub Occurrence in the Northern Great Plains

-------
Figure 2.6.7 Lake Sturgeon Occurrence in the Northern Great Plains

-------
Figure 2.6.8 Pugnose Shiner Occurrence in the Northern Great Plains

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Figure 2.6.9 Greater Redhorse Occurrence in the Northern Great Plains

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 Chapter 2- Status of Aquatic Resources

 from agriculture (Federal Register, 1997).

    The  sicklefin  chub is  a candidate for
 federal threatened or endangered listing.  It
 occurs in a range very similar to that of the
 pallid sturgeon, although no occurrences are
 recorded for  the  Powder  River.   Sicklefin
 chubs prefer the main channels of large turbid
 rivers in areas of strong current over sand or
 fine gravel (Ashton and Dowd,  1991). They
 are in decline due to habitat loss from altered
 flow regimes and loss of turbidity (Ashton and
 Dowd, 1991; U.S.  Fish and Wildlife Service,
 1995).

    Sturgeon chubs are also a candidate for
 listing, but are more widespread than either
 the pallid sturgeon  or sicklefin chub. It occurs
 in the Missouri, Little Missouri,  Yellowstone,
 Tongue,  Powder, White, Bad and  Cheyenne
 Rivers.  The habitat requirements are  swift
 current areas of large silty rivers, usually over
 a  gravel  bottom (Ashton and Dowd,  1991).
 They are also declining due to habitat loss
 from altered flows, possibly from decreased
 turbidity (Ashton and Dowd, 1991).

    Lake sturgeon is a G3 species found in the
 Northern Great Plains only  in the Lewis and
 Clark reach of the Missouri River. It prefers
 the bottom of lakes and large rivers over mud,
 sand or gravel (Page and Burr, 1991).

   The pugnose shiner, also a G3 species,
 occurs in the Upper James in North and South
 Dakota and the Lower Sheyenne and Turtle
 Rivers in North Dakota. Its habitat includes
 clearvegetated lakes and vegetated pools and
 runs of creeks and rivers, usually over sand
 and mud  (Page and Burr, 1991).

   The other G3 species, the greater redhorse
is found in the  Turtle and Maple  Rivers in the
Red River drainage of North Dakota. It prefers
large streams with clear waters and bottoms of
clean sand, gravel or boulders (U.S. Fish and
Wildlife Service,  1995).   It is imperiled  by
lowhead  dams,  channelization,  nonpoint
source pollution and degradation of riparian
areas (U.S. Fish and Wildlife Service, 1995).
It reaches the western edge of its range in
eastern North Dakota.

    Two bird species that warrant mention are
the  threatened  piping   plover  and  the
endangered least tern.  While not specifically
aquatic species, their impediment is a direct
result  of  changes  in  the  Missouri  River.
Habitat required for nesting has been lost from
channelization and from changes in the river's
flow. Both species nest on barren beaches of
sand or gravel, areas which were previously
created by the natural spring flooding regime
and were dry in late summer, but now can be
flooded.

    There  are 11 species of mollusks that
potentially occur in the NGPAA and  are listed
as G3 or less by The Nature Conservancy.
Survey  data for  these species  within  the
Northern Great  Plains is generally  poor,
however.   They are  listed in  this report
because of theirpossible occurrence, although
it is likely that at  least some of them do not
occur within the NGPAA.   Four  species
(higgins eye, bullhead, fat pocketbook and
winged mapleleaf) are not considered to exist
north of Nebraska within the Missouri basin,
and it is not known if they reach  up into the
tributaries that are in the NGPAA. Since the
fat  pocketbook and  winged mapleleaf  are
listed as  .endangered  it  is important  to
determine more about these species' ranges.
Five other species (monkeyface, western fan-
shell, rock-pocket book,  elktoe  and round
pigtoe)  are  thought to exist within South
Dakota and Nebraska, as well as  many other
states to the east. Again, however, it is not
certain that  they occur within  the  NGPAA.
One species, the round pigtoe, is known from
the Vermillion  watershed,  adjacent  to  the
NGPAA from  a  1993  observation.  Two
92

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                                                  Northern Great Plains Aquatic Assessment
 species, the ellipse and the scaleshell, almost
 certainly do exist within the NGPAA, but the
 range is poorly known.  The scaleshell was
 observed  in  the Lewis  and  Clark  Lake
 watershed  in  1982 and  the  ellipse  is
 considered a resident of North Dakota.  The
 scaleshell  is  listed  as  a G1G2 species,
 underscoring the importance  of determining
 where it exists.

    Table 2.6.2 is a listing of all the aquatic
 species  either listed  or  are special concern
 species  by the  individual states.   These
 overlap in some instances with th^ federal list,
 but some unique  species are rare in a state
 due to a regional decline or the state is at the
 edge of a species range.

    Overall, the density of special concern
 species in the Great Plains is low (Ostlie, et al.
 1997). The density of species of concern by
 ecoregion  province  is  0.004  per  10,000
 ectares in the Great Plains Steppe Province,
 0.005 per 10,000 hectares in the Great Plains
 Dry Steppe Province  and 0.007 in the Prairie
 Parkland (Temperate) Province.  As a way of
 comparison, the Black Hills Province has 0.063
 per 10,000 hectares, the highest in the Great
 Plains (Ostlie, et al. 1997). Mapping by Ostlie,
 et  al. (1997)  of patterns of documented
 occurrences of federally listed species clearly
 show areas tied to aquatic systems.  In the
 Northern Great Plains, the Platte River, the
 Niobrara River,   the  Missouri  River,  the
 Yellowstone River, the Lower Cheyenne River
 and the Sand Hills stand out.  This particular
 analysis  includes  all species that use these
 aquatic  systems,   including  birds  and
 mammals.

 Future Trends

    As of this  writing, the topeka shiner is
 proposed for listing as an endangered species.
Two other  fish, the sicklefin  chub and the
sturgeon chub are candidates for listing and it
 is presumed they will be proposed for formal
 listing some time in the future.  This region is
 fortunate in that it does  not  have a great
 number  of  imperiled species compared to
 other regions of the country. The Great Plains
 with 28% of continental United States land
 mass, contain only 6.6%  of G1-G3 species
 (Ostlie,  et al. 1997).  As mentioned before,
 however, this most likely  reflects the lower
 number of endemic species, not necessarily
 lower impacts. This could also reflect a lack of
 adequate surveys in the region.

    The Missouri and James Rivers stand out
 in the region as areas of significant importance
 to imperiled aquatic species.  The problems
 caused  by dams  and altered flow on  the
 Missouri and altered flow and nonpoint source
 pollution in the James are likely to continue in
 the near future, but pressures to change are
 building.  The slowing in the loss of wetlands
 (see Chapters) should also slow the decline of
 many species.

 2.7   FUNCTIONAL  ANALYSIS   FOR
 AQUATIC SPECIES

 Introduction

    Each aquatic  species has   a  set  of
conditions under which it  can  best survive.
Specific ranges of temperature, pH, dissolved
oxygen or current velocity and many others
represent these  conditions  and if  forced
outside of these ranges for a certain length of
time, the species is put at  risk. This section
compares the   ranges  of  certain  critical
parameters for several aquatic fish species
representing six guilds with the conditions that
exist in the watersheds within their ranges.

Key Findings

•The  analysis  shows that for fish species
representing four  of  the  six  guilds,  most
                                                                                  93

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 Chapter 2 - Status of Aquatic Resources
 watersheds where the species exists are in fair
 to good condition based on the parameters
 used.
 •Fortwo species, pallid sturgeon and longnose
 dace, the opposite is true - most watersheds
 where these species exist have parameters
 outside the optimum range at least half of the
 time.

 Data Sources and Methods

    This analysis was done using the program
 Netweaver provided   for  this  project  by
 Pennsylvania State University and Knowledge
 Garden, Inc. Netweaver is a knowledge-based
 system in which a dependency network  is
 created to answer specific questions based on
 the data provided. The Netweaver program is
 linked to the GIS program, ArcView, using the
 Forest  Service's  Ecosystem  Management
 Decision Support (EMDS) System.

    in this project a network was created for six
 fish species representing six important guilds
 in which  the water flow and water quality
 parameters necessary for their survival were
 available.   Therefore,  in  each   species'
 dependency network,  a number of different
 parameters (representing  values  for each
 species) such as dissolved oxygen, flow, pH or
 temperature were connected to each other to
 ask the question "Where do the parameters
 exist within the necessary range to  allow this
 species to survive?".  The parameters were
 provided  by the U.S.  Geological Survey-
 Biological  Resources   Division.     These
 networks   were  then  linked  within   the
 ArcView/EMDS program to water quantity and
 water quality data  provided  by the   U.S.
 Geological Survey-Water Resources Division.
 The water quality data is from Storet.and the .
 flow data  is from WATSTORE.  The system
 provided information as to whether in each
watershed where data was sufficient, if the
 conditions necessary for the species existed.
 It is important to note that the data was for one
 station in the watershed, as mentioned before,
 usually  the  lowest  in  the  watershed.
 Therefore, for certain guilds  this may not
 represent the best habitat and the program will
 reflect this.  It also must be noted that only a
 few parameters  were  available for  each
 species (temperature, velocity, etc.) and that
 many other factors influence their survival.

 Spatial Patterns

    The  six species  (and  the guilds  they
 represent) used in the analysis were emerald
 shiner  (planktivore   in  large rivers   and
 reservoirs);  fathead  minnow (planktivore in
 ponds,  lakes,   slow  rivers  and   river
 backwaters);   longnose   dace  (benthic
 invertivore in  small  clean  streams); yellow
 perch (benthic invertivore in lakes, ponds, slow
 streams  and  larger  rivers); pallid sturgeon
 (benthic feeder on larger particles in larger
 turbid  rivers and  reservoirs); and  walleye
 (piscivore).   The  parameters used  for all
 species were  temperature  and velocity.  In
 addition, for yellow perch, pallid sturgeon and
 walleye,  minimum dissolved oxygen needs
 were also used and for fathead minnow and
 yellow perch, pH requirements were used..

    For the analysis, the requirements for each
 species was matched with  median or mean
 water quality or flow data for the one station in
 each watershed. Figures 2.7.1 through 2.7.6
 present the results of each analysis for each
 species.

    In Figure 2.7.1, using median/mean data
 for temperature and velocity, emerald shiner
 could be stressed in 13 watersheds, many in
the upper Missouri River basin.  The analysis,
 however,  rated all other watersheds in its
 range as fair. Fathead minnow (Figure 2.7.2)
 has  24 watersheds rated as poor,  but the
range of this species is wide, therefore, this a
small portion.  This is based on temperature,
velocity and  pH. As with emerald shiner,
94

-------
                                                                                                       il Poor
                                                                                                       '] Fair
Figure 2.7.1 Functional Analysis for Emerald Shiner

-------
                                                                                                      H Fair
Figure 2.7.2 Functional Analysis for Fathead Minnow

-------
                                                                                                    Poor
                                                                                                    Good
Figure 2.7.3 Functional Analysis for Longnose Dace

-------
rigure 2,7.4 Functional Analysis for Yellow Perch

-------
                                                                                                      Poor
                                                                                                      Fair
Figure 2.7.5 Functional Analysis for Pallid Sturgeon

-------
                                                                                                         Poor
                                                                                                         Good
Figure 2.7.6 Functional Analysis for Walleye

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                                                  Northern Great Plains Aquatic Assessment
though, the analysis rated all others as fair.
Figure 2.7.3, iongnose dace, shows only five
watersheds rated as good, with the rest of the
range  as  poor  (using  median/mean
temperature and velocity).  For this species,
this is most likely an artifact of the way the
stations for each watershed were chosen. The
lowest station will most likely have larger flow
and greater turbidity. This is not the preferred
habitat of Iongnose dace or of the  other
species in this guild.   Stations  chosed at
locations more appropriate for this guild would
most likely have shown a different result.

   The analysis for yellow perch used the
most  data for  any species (median/mean
temperature, dissolved oxygen, velocity and
pH) and is presented in Figure 2.7.4. Seven
watershed are rated as poor and all others as
good. The watersheds with the most problems
are located  in  the Upper Missouri  basin.
Figure 2.7.5 presents the analysis for pallid
sturgeon and it shows only one watershed in
this species range listed as fair.  All others
rated as poor based on median/mean data for
temperature, velocity and dissolved oxygen.
The one rated as fair is Fort Peck Lake reach
of the Missouri River (10040104). Figure 2.7.6
shows the results for  walleye in  which
median/mean temperature, dissolved oxygen
and velocity were used.  Eight stations rated
as poor with all others good.

2.8 COMMUNITY INTEGRITY/AQUATIC
HABITAT STUDIES

Introduction

   This section looks at some of the fish and
macroinvertebrate  community studies that
have been done ort-streams and rivers in the
Northern Great Plains and examines some
general  community   characteristics  of
intermittent streams. In addition, this section
includes more detailed reviews of the aquatic
communities,  habitat  and  water  quality
characteristics  of  the  James,  Powder,
Yellowstone, Missouri, Moreau, Cheyenne and
Red Rivers, since these were rivers for which
this  information was available.  The recent
work of The Nature Conservancy with respect
to significant aquatic landscapes in the Great
Plains is also included.

   There  are several  biological  measures
available to compare fish or other biological
assemblages in a given stream to a reference
or minimally impacted stream (Frenzel, 1996).
These range  from a  simple measure  of
diversity or richness to multiple measures such
as the Index of Biological Integrity (Karr, 1981)
or the Rapid Bioassessment Protocol (RBP)
(Pflakin, etal. 1989).

   The Index of  Biological Integrity uses
several measures of the  fish community  to
determine the status of the biotic integrity of a
stream (Karr, 1981). Some of the measures
used include number of species, presence of
species intolerant  of pollution, number  of
individuals,   proportion   of   omnivores,
insectivores and carnivores, as well as others.
These measures are then used together in an
index that ranks the quality of the site. Since
this  index was developed there have been
several  variations  and  other   indices
developed.    The  Rapid  Bioassessment
Protocol   uses   the    IBI   or   benthic
macroinvertebrate measures to assess biotic
integrity and there are several different levels
of complexity depending on the assessment
needs (Pflakin, etal. 1989).

   Most of the states in the NGPAA are just
beginning  to look  at biological/community
measures to determine aquatic condition. The
exception  is Nebraska, which is incorporating
a biotic index now into  its analysis  of use
support.  Nebraska combines the IBI and ICI
(Invertebrate  Community  Index)  into the
Combined Biotic Index (CBI) which has a value
between 0.0 and 1.0 (Nebraska Department of
                                                                                 101

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 Chapter 2 - Status of Aquatic Resources
 Environmental Quality, 1996). A stream with a
 value nearer to 0 is of good quality and those
 with CBIs less than 0.6 were found to be fully
 supporting uses, while those above 0.75 were
 not  supporting  (Nebraska  Department  of
 Environmental Quality, 1996).

 Key Findings

 •The NGPAA contains  a large number of
 unique  aquatic  communities  including  the
 Missouri River, Devils Lake, the Lostwood area
 and the Nebraska Sand Hills.
 •A study applying the IBI to the Platte River
 basin found the  Dismal River and the Platte
 mainstem to have the highest IBI scores and
 richest fish assemblages.  Sites with greater
 hydrologic variability tended to have fewer
 species.
 •A  study of Long  Pine Creek  found  125
 macroinvertebrate taxa, and those found were
 indicative of good water quality.  A similar
 study in Bone Creek (tributary of Long Pine
 Creek) found less taxa and indicators of an
 organically enriched system.
 •The  James  River has  57  fish  species
 inhabiting it.
 •The Powder River  has  32 fish species  (25
 native) and this  system is unique in that it
 represents what was originally found in free-
 flowing plains rivers.
 •The Yellowstone River is one of the longest
 free-flowing rivers in the contiguous United
 States and has 56 fish species.
 •Within  the  Red  River basin on the North
 Dakota  side  (the  NGPAA)  fish  species
 richness is greatest in the Sheyenne River and
 the Red mainstem  with  greater than  40
 species.  It is lowest in the Wild Rice and Elm
 Rivers with less than 20 species.
•A survey of the Cheyenne  River in South
 Dakota found 12 fish species and 14 total taxa
of macroinvertebrates. A similar study on the
Moreau River found 18 fish species  and 22
macroinvertebrate taxa.
Data Sources

    The information presented in this section
was mainly obtained from literature reviews
and from The Nature Conservancy Report, A
Status of  Biodiversity in  the  Great Plains
(Ostlie, etal. 1997).

Data Quality and Gaps

    There 'is a general paucity of ecological
and community-level  aquatic  studies  for
streams within the Northern Great Plains. This
seems to be especially true of many of  the
western Missouri River tributaries,  although
few streams within the entire NGPAA appear
to have been exhaustively studied.

Analysis

    While the Great Plains may contain less
endemic species than many other parts of the
country, it  does contain a large number of
unique natural  communities.   Ostlie, et al.
1997,  reported that  of  the  619 natural
communities occurring in the Great Plains, 304
(49%) are found exclusively or primarily within
the Plains.  This figure includes both aquatic
and terrestrial communities and, is of course,
not limited  to the Northern Great Plains. It
does show, however, that there are a number
of unique  assemblages of  species  in this
region.   Table 2.8.1  lists those  aquatic
landscapes  of biological significance in  the
Northern Great Plains  as  identified by The
Nature Conservancy (Ostlie, et al. 1997).

    The following is a  review of community
studies  done  on  several  streams  in  the
Northern Great Plains, as well  as a general
overview of the  community  structure   of
intermittent streams, an important component
of Northern Great Plains aquatic systems. In
a   number  of   the  studies,   fish   or
macroinvertebrates were used  to determine
the integrity of the community (diversity, Table
102

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Table 2.8.2 Threatened, endangered, and special concern aquatic species occurring within the Northern Great Plains Assessment
Area listed by individual states.	
Scientific Name
Common Name
Listing by State
Global
Rank
Fish
  Acipenser fulvescens
  Catostomus catostomus
  Cycleptus elongatus
  Fundulus diaphanus
  Macrhybopsis gelida
  Macrhybopsis meeki
  Notropis heterolepis
  Percopsis omiscomaycus
  Phoxinuseos
  Phoxinus neogaeus
  Polydon spathula
  Scaphirhynchus albus
  Semotitus margarita
  Umbra limi

Herptiles
  Emydoidea blandingii
  Graptemys psuedogeographica
  Rana pipiens
Lake Sturgeon
Longnose Sucker
Blue Sucker
Banded Killifish
Sturgeon Chub
Sicklefin Chub
Blacknose Shiner
Trout-perch
Northern Redbelly Dace
Finescale Dace
Paddlefish
Pallid Sturgeon
Pearl Dace
Central Mudminnow
Standing's Turtle
False Map Turtle
Northern Leopard Frog
      NE-T              G3
      SD-T              G5
      MT-sc             G4'
      SD-E              G5
      MT-sc; SD-T        G2
      MT-sc; SD-T        G3
      SD-E; NE-T         G5
      SD-T              G5
      SD-T; NE-T         G5
      SD-E; NE-T         G5
      MT-sc             G4
      MT-E; SD-E; NE-E   G1G2
      MT-sc; SD-T; NE-T  G5
      SD-E              G5
      SD-E              G4
      SD-T              G5
      MT-sc             G5
E - Endangered
T - Threatened
sc - Special Concern

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r«bi*z.B.i  Aquatic Landscapes of Biological Significance in the Northern Great Plains as identified by The Nature Conservancy
(Osflie, et al. 1997)
Area
Features
Cannonball/Cedar Rivers (ND)



Comertown Prairie (MT)



Devils Lake Basin (ND)


Dismal River (NE)


Keya Paha River (NE, SD)


Little Missouri River (MT, ND, SD, WY)
Lostwood(ND)
Medicine Lake Sandhills (MT)
Flows through the second-highest proportion of good-to-excellent condition native
rangeland in North Dakota. Three state-rare fish species are found here, along with blue
sucker and pallid sturgeon.

Rolling hills interspersed with lakes and ponds. Believed to be the largest remaining,
relatively undisturbed pothole prairie complex in Montana. Important nesting and
migration habitat for shorebird and waterfowl species, including piping plovers.

The largest natural lake in North Dakota. The basin and surrounding wetlands provide
significant migratory and breeding habitat for shorebirds, sandhill cranes and waterfowl.

The river flows through a shallow braided canyon and primarily consists of spring-fed,
near constant flow.

The river is primarily spring-fed and forms the northeast boundary of the. sandhills.
Riparian woodlands and floodplain prairie are the principal natural communities.
                      *
Highly turbid river that experiences periods of no flow during portions of the year,
providing conditions  for a unique ecosystem essential for various forms of aquatic life.
Several rare plant and animal species find habitat in and along the river, including the
sturgeon chub.

High quality example of the prairie pothole landscape mosaic situated on the kettlehole
moraine and outwash of the Missouri Coteau. Numerous lakes and cattail marshes occur
within a matrix of mixed grass prairie.  Centers on Lostwood National Wildlife Refuge, a
10,000 acre site that is highly important for waterfowl and shorebirds. the piping plover
is found here.                                                    '

The largest sandhill complex in Montana on the southeast side of Medicine Lake.
Medicine Lake National Wildlife Refuge is located within the landscape encompassing the
largest natural lake in northwestern Montana. The piping plover is found here.

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Table 2.B.1 continued Aquatic Landscapes of Biological Significance in the Northern Great Plains as identified by The Nature
Conservancy (Ostlie, et al. 1997)
Area
Features
Middle Loup River (NE)
Middle Missouri River (ND, SD, NE)
Milk River (MT)
Nebraska Sandhills (NE, SD)
 Niobrara (NE)
 North Loup River (NE)
Located in the heart of the sandhills, it is spring-fed and has a constant How.  It is
primarily bordered by sandhill prairies and marshes that occur in the lower floodplain.
The whooping crane can be found here.

Includes reaches of the Missouri River that have remained unchannelized or not flooded
beneath reservoirs in central North Dakota and southeast South Dakota and adjacent
Nebraska. The river still maintains some semblance of its former self - wide and
meandering with islands, sandbars, riverine wetlands and riparian forests. Special
concern species present in these stretches include lake sturgeon, piping plover, blue
sucker, whooping crane, bald eagle, scaleshell, sturgeon chub, sicklefin chub, pallid
sturgeon and interior least tem.

The Milk River flows through tracts of native mixedgrass prairie, moist meadows and
shrublands.  Several lakes provide staging and nesting areas for the American white
pelican.
                                                                /
Numerous wetlands within the landscape make it an important waterfowl and shorebird
stopover. Along the north* edge of the landscape, the Niobrara River has cut a steep
narrow valley. Minnechaduza Creek has several high-quality sandhill fens.  The wetlands
provide nesting habitat for numerous waterbird species. Special concern species found
here include piping plover, blue sucker, whooping crane, bald eagle, topeka shiner and
interior least tem.

This is the largest spring-fed, constant flowing river that drains the Nebraska Sand Hills.
Piping plover, whooping crane, bald eagle and interior least tern are found here.

This spring-fed river drains the sandhills. Whooping crane and topeka shiner are found
here.
Park River (ND)
This landscape encompasses all three branches of the river.

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Tubla 2.B.1 continued Aquatic Landscapes of Biological Significance in the Northern Great Plains as identified by The Nature
Conservancy (Ostlie, et al.  1997)
Area
Features
Pembina/Tongue Rivers (MB, ND)
Rocky Mountain Front (MT, AB)
Sheyenne Delta (ND)
Snake River (NE)
Souris River (ND, MB, SK)
Southern Missouri Coteau (ND, SD)
Turtle Mountains (ND, MB)
Lowland woodlands and wet thickets are found along the banks of both rivers. The
Pembina has eroded to a depth of 400 feet. A significant diversity of plant and animals
exist.

This area is located in far western edge of the Northern Great Plains. Numerous small
marshes and wetlands occur along several creeks and lakes. Riparian cottonwood
communities and pine butte wetlands and fens occur here.

This area contains one of the most extensive  woodlands in North Dakota. Fine examples
of sedge meadow, wetland thickets and fens occur here. The Sheyenne National
Grassland dominates the majority of this site.  This area was listed as terrestrial by The
Nature Conservancy, but it has been included here because of the extensive riparian
areas.

An intact river system with a natural hydrograph. It supports populations of the Great
Plains endemic plains topminnow.

The river valley contains extensive oxbows, fens, mixedgrass prairie, riparian forests,
aspen woodlands and sand prairies.  The landscape is an important breeding area for
wood ducks and is home to numerous  species that require riverine habitats. It provides
habitat for numerous state and provincially-rare  species.

Located on a terminal moraine, this area is characterized by numerous pothole wetlands
within a complex of mixedgrass prairie. Piping plover and whooping crane are found
here.-

This is a wooded kettlehole moraine.  Numerous lakes and wetlands deft the forested
landscape. Wetlands are used as breeding habitat for ring-necked ducks, red-necked
grebes and several species of colonial waterbirds.

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Table 2.8.1 continued  Aquatic Landscapes of Biological Significance in the Northern Great Plains as identified by The Nature
Conservancy (Ostlie, et al. 1997)

Area	     Features	
Missouri/Yellowstone Rivers (MT, ND)      This area encompasses much of the length of the Yellowstone River and portions of the
                                         Upper Missouri River in Montana. The Yellowstone is the largest unregulated river in the
                                         United States, displaying seasonally high flows of turbid water.  It is these natural flow
                                         regimes that maintain the turbid aquatic habitat necessary for many of the large-river
                                         aquatic species in decline throughout the watershed. Together, the Yellowstone and the
                                         Upper Missouri provide the best remaining large-river fish populations within the entire
                                         Missouri River watershed.  Species such as sicklefin chub, sturgeon chub, blue sucker,
                                         paddlefish and the pallid sturgeon still occur in relatively large numbers in this area.
                                         Sandbars and unvegetated stretches along these rivers provide important nesting areas
                                         for least tern and piping plover.

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                                                  Northern Great Plains Aquatic Assessment
 abundance, etc.) and make inferences about
 water quality.  In addition, there is included a
 discussion of a number of general studies on
 several important river systems in the Northern
 Great Plains.

 Intermittent Streams

    Many streams in the Northern Great Plains
 are   intermittent    Therefore,  a  general
 discussion   of   aquatic   community
 characteristics  of  intermittent streams   is
 included here.  Zane, et al. (1989) reviewed
 the literature on the biology of intermittent
 streams, which is included here.

    Intermittent streams have reduced aquatic
 plant  and  macroscopic  algae   diversity.
 However,  emergent aquatic  vegetation  is
 common along the banks of permanent pools
 and intermittent streams are inhabited by a
 diverse array of diatoms and periphytic algae.
 These  are the  most  important  primary
 producers in these systems and along with
 plant litter they compose the food base (Zane,
 et  al.   1989).     Invertebrates  dominate
 intermittent  streams both  numerically and
 functionally  and   virtually  all  biological
 processes  of  intermittent   streams   are
 mediated by  macroinvertebrates  (such  as
 aquatic insects).   While a  few species of
 invertebrates are  restricted to intermittent
 streams, generally  there are fewer species in
 intermittent streams than in perennial streams.
 Plecopterans  are   reported to be rarely
 observed in plains streams   (Merritt  and
 Cummins,   1996).  Invertebrate   species
 assemblages reestablish rapidly in intermittent
 streams following drought, provided they have
 opportunities and adaptations to survive dry
 periods (Zane,  et  al. 1989).   In a study in
 eastern South Dakota, of the 60 benthic taxa
 collected  from  riffles,  42  occurred   in
 intermittent  streams and  58  in  perennial
streams  (McCoy and  Hale, 1974).  Two
species, a stonefly and a caddisfly, were found
exclusively in intermittent streams. In pools, of
the  21  taxa  collected,   seven  were  in
intermittent  streams,  one  of  which  (a
dragonfly) was absent from perennial streams.

    Intermittent streams are dominated  by a
relatively small assemblage of fishes that are
highly tolerant  of variable  and  extreme
physical conditions (Zane, et al. 1989).  Even
though they consist of relatively few species,
the  abundances  are often high.  Resident
species are primarily small and feed  on algae,
detritus and invertebrates.   There is some
evidence  that intermittent streams  may be
important nursery areas before cessation of
flow  because  they  are  warm,   support
abundant invertebrate forage and lack large
predatory fish  (Zane, et al.  1989).  In South
Dakota a collection from two intermittent and
five perennial streams found twnty-two species
in the perennial streams, twelve of which also
occurred in intermittent streams (McCoy and
Hale, 1974).  These were brassy  minnow,
central stoneroller, common shiner, bluntnose
minnow,  fathead  minnow,  blacknose dace,
creek chub, white  sucker, black bullhead,
brood stickleback, green sunfish and johnny
darter.

Platte, Loup and Elkhom Rivers, Nebraska

   Frenzel and Swanson (1996) sampled the
fish communities at nine sites in the Platte
River basin to determine an index of biological
integrity.  Although most of the sampling sites
were just to the south of the NGPAA  (one was
in the NGPAA), this study is  instructive of
Great Plains streams. The Index of Biological
Integrity (IBI) used in this study consisted of a
combination of six measures. These were the
number of native fish species, the number of
native cyprinid species, the   number  of
intolerant (to pollution) species, the percentage
of  tolerant  species,   the   percentage  of
individuals as omnivores and the percentage
of individuals  as carnivores.  Numbers  of
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 Chapter 2 - Status of Aquatic Resources
 species  ranged from  two (Shell Creek, a
 tributary to the Platte just east of the Loup
 River) to 21 (Platte River near Brady) and total
 fish abundance ranged from 41 (Shell Creek)
 to 7611  (Platte River near Brady).  The IBI
 scores ranged from six  at  Shell Creek  to
 twenty-four at several locations.  The lowest
 IBI scores resulted from a few tolerant species
 comprising a sample. Higher scores generally
 came from samples collected at the  Dismal
 River and at mainstem Platte River sites which
 have  a greater degree of habitat complexity
 than  do  the  smaller  streams.   IBI  scores
 related to species tolerance  suggested that
 sites with greater percentages of cropland in
 the basin had fish communities indicative  of
 poor  water  quality (fish  were  tolerant  of
 physical  or  chemical  water  quality
 degradation).

   The Dismal River and  Platte River sites
 were more hydrologically stable in this study
 and supported the richest fish assemblages.
 In contrast, the other sampled  sites showed
 greater  hydrologic variability, and the  fish
 communities tended to have fewer species
 and larger percentages of trophic generalists.
 This corroborates the work of Poff and Allan
 (1995) who found that hydrologically variable
 sites  typically  were  characterized   by.
 assemblages  of trophic  generalists, while
 stable sites included more specialists.

 Long Pine Creek, Nebraska

   The Long Pine Creek watershed (Brown
 County,   Nebraska)  was almost  exclusively
 rangeland and hay meadows  in 1965, but by
the mid  1980s was 30% irrigated cropland
 (Maret, 1988).  Historically, the streams in this
watershed were of  high  quality, but water
quality impairments as a result of the land use
changes has occurred (Maret,  1985). Despite
these changes, Long Pine Creek is the longest
self-sustaining  trout stream  in  Nebraska
(Maret,   1988).     This  study  used
 macroinvertebrates, which are considered to
 be excellent  indicators  of both long-term
 environmental  changes  such as  siltation
 (Lenat, et al., 1979) and slug loadings of short
 duration (Prophet and Edwards, 1973).

    The macroinvertebrate fauna from Long
 Pine Creek was found to include at least 125
 taxa with the faunal assemblage dominated by
 mayflies,  caddisflies  and  midges  (Maret,
 1988). This type of community structure is
 common for Midwestern streams (Maret and
 Christiansen,  1981).   The taxa  found all
 through Long Pine Creek were indicative of
 good   water  quality and  the  diversity  of
 organisms was relatively balanced. The biotic
 index values found were in the good water
 quality range.

   At least 90 taxa were collected from Bone
 Creek (a tributary of Long Pine Creek) and the
 predominant organisms were midges, tubificids
 and mayflies. Bone Creek fauna was made up
 of tubificid worms, which are indicative of an
 organic-enriched aquatic environment. It also
 had a silt-tolerant group of mayfly species and
 chironomids indicative of waters with organic
 enrichment and a high silt  load.  Stoneflies
 (indicators  of  good  water  quality)  were
 collected from Long Pine Creek, but not in the
 headwaters  of Bone Creek.   They  were
 collected  in the lower portions of Bone Creek
 in the winter and spring, but disappeared in
the summer. Bone Creek generally had a fair
to poor biotic index  and  the  invertebrate
community was composed of,pollution tolerant
organisms (especially in the lower reaches).

 Sand Hills Streams, Nebraska

   Species  richness and  dominance were
summarized for several physiographic areas in
central Nebraska, including the Sand Hills (Zelt
and Jordan, 1993).  The streams sampled in
the Sand  Hills had median fish community
richness of nine species in first to third order
108

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                                                  Northern Great Plains Aquatic Assessment
 streams.  The single most dominant species
 took up 43% of the sample as a median of
 streams sampled. Formacroinvertebrates, the
 Sand  Hills streams  had 24  species  as a
 median and the most dominant one took up
 30%.

 James River, North and South Dakota

    The James River has one of the lowest
 gradients of any river of similar length in North
 America (Berry, et al. 1993) and is dominated
 by catfish-carp-carpsucker community (Funk,
 1970).  The James  is a typical warmwater
 stream with  wide  flow  and temperature
 variation, shallow channels with uniform sandy
 beds and turbid waters (Winger, 1980; Cross
 and Moss,  1987).    Berry,  et  al. (1993)
 recognized four river reaches.  The first is the
 headwater reach in North Dakota, which is
 intermittent, incised into glacial drift and slopes
 46 cm/km. The second reach is the lake plain
 where  the glacial Lake Dakota covered  the
 area.  The gradient  here is as low as  2.4
 cm/km. This reach is dominated by hardwood
 timber, oxbows and wetlands. The third reach
 near Huron is relatively straight, has greater
 channel capacity and a narrower floodplain
 than other reaches.  The fourth reach is from
 Huron  to  the  Missouri  River,   in which
 meanders increase again and the river drops
 about 12 cm/km. Fifty to. 65 percent of  the
 watershed is cropland (com and wheat) and
 pasture with about  2% forest,  existing as
 narrow strips along the river.

   There   are   40   to  48  genera  of
 phytoplankton in the James River (Hansen and
 Repsys, 1986).  Macroinvertebrate diversity
 and  abundance was  found to be greater in
 oxbows than  in the mainstem and was
 dominated by hemipterans, ephemeropterans
and  odonates (Larson, 1990).  Chironomids
dominated the benthic fauna in the mainstem
(Hansen and Repsys, 1986),  but mayflies,
beetles, odonates and dipterans were also
 present. The clam community once comprised
 17 species, but in 1985 only four were found
 (Perkins, 1986).  Since 1975,  57 different
 species of fish  have been found in the river
 (Berry, etal. 1993). More species were found
 in the  river than  in  tributaries,  but the
 tributaries contained some species that prefer
 high velocities,  gravel substrates  and  clear
 water  (central  stoneroller, topeka shiner,
 blackside darter).  Species richness has been
 reduced in the headwaters more  than the
 lower parts (Berry, et al. 1993)  Five of twenty
 species found in 1896 in North Dakota had not
 be collected recently, while only one of 20
 from the lower river was missing.

   The Jamestown Dam in North Dakota has
 almost eliminated flooding to the South Dakota
 state line but now silt is not deposited overland
 and floods do  not flush the river substrate
 (Berry, et al. 1993).  Small dams  along the
 river have created pools that are fish refuges
 during low flow,  but also trap organic material
 and inhibit fish movement. A drop in the water
 table  from  irrigation pumping  and wetland
 drainage has resulted in loss  of water from
 springs  and some tributaries  have become
 intermittent reducing nursery areas for juvenile
 fish.

\PowderRiver, Wyoming and Montana

   The Powder  River  in Wyoming   and
 Montana has been  relatively unaffected by
 water development, channelization and exotic
 species (Hubert, 1993).  It is a low gradient
 stream with poorly developed riparian areas,
 highly   fluctuating   flows,   extremely  high
 turbidity and an unstable sand bottom.  The
 river channel is shallow, highly braided and
 meanders substantially within the floodplain.
 Four tributaries provide most of the flow to the
 River. These are Crazy Woman Creek, Clear
 Creek, the Little Powder River and Mizpah
 Creek. The tributaries tend to have more well-
developed riparian areas, less turbid water and
                                                                                 109

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 Chapter 2- Status of Aquatic Resources

 more  stable bottom  substrates  than  the
 Powder River (Hubert, 1993).

    Of the sites studied by Rehwinkle (1978),
 Mizpah Creek had the greatest diversity of
 fish, indicating that it has the highest habitat
 diversity.  The amount of riparian vegetation
 along the Powder River has been estimated at
 6,010  hectares  (Rehwinkle,  1978).   The
 floodplain of the river and its tributaries are
 irrigated 'primarily for hay production.  The
 biotic productivity of the Powder is low due to
 high  turbidity  and  variation  in  flow and
 unstable bottom substrate (Hubert, 1993). The
 productivity is higher in the tributaries. The
 densities of macroinvertebrates are low, but
 they are unique among  Montana streams
 (Hubert, 1993).

    The Powder  River  and its  tributaries
 support 32 species of fish, 25 of which are
 native (Hubert, 1993). The common species in
 the river are flathead chub,  brassy minnow,
 plains  minnow,  western  silvery  minnow,
 sturgeon chub,  goldeye, river carpsucker,
 shorthead redhorse, stonecat, common carp,
 longnose dace and channel catfish. Fifteen
 species each of fish have been reported from
 Mizpah and  Crazy Woman  Creeks.  Large
 riverine fish may be migrating upstream during
 runoff  in spring  to spawn in  tributaries  or
 upstream  areas  of  the Powder  and this
 seasonal movement may be necessary for
 some species (Hubert, 1993).

   The nearby Tongue River probably had a
fish community similar to the Powder before
water development and several species now
exist only below the  farthest  downstream
diversion dam (Hubert, 1993).  The Powder
 River fish community is unique and probably
represents the kind of community that was
formerly found in free-flowing  great plains
rivers (Hubert, 1993).
 Yellowstone River, Montana

    The Yellowstone River is the longest free-
 flowing river in the contiguous United States,
 however,  31%  of the drainage  basin  is
 upstream of storage reservoirs (most of which
 are in the Bighorn basin) (Koch, et al. 1977).
 The mean annual discharge near the mouth is
 362 cms and the Bighorn River is the largest
 tributary to  the Yellowstone  with  a mean
 annual  discharge  of 110 cms (White and
 Bramblett,  1993).   The  damming of the
 Bighorn caused an 80% reduction in sediment
 yield to the  Yellowstone  (five million  metric
 tons). Since there has not been any reduction
 in sediment transport at  the  mouth of the
 Yellowstone (Koch, 1977), this indicates that
 the Yellowstone may be degrading  its bed and
 banks to produce the extra sediment (White
 and Bramblett,  1993).  The water quality  is
 generally good from source to mouth, although
 a general deterioration is noted  along that
 length (White and Bramblett, 1993). The river
 has a rich invertebrate  fauna  dominated by
 mayflies (37 species), caddisflies (36 species),
 stoneflies (37 species) and true flies (Newell,
 1977).

   There  are  56  species of fish in the
Yellowstone River (White and Bramblett, 1993)
which exist in  three zones: upper coldwater or
 salmonid zone; transition zone  of  both
cold water and warm water species; and a lower
warmwater zone (Haddix and Estes,  1976;
 Peterman, 1979). Only the last two are in the
 Northern Great Plains Assessment Area. The
transition zone extends from the confluence
with the Boulder River to the confluence with
the Bighorn  River and  contains 30 species
 (White and Bramblett, 1993). The  lower zone
 runs from the  Bighorn confluence to the
Missouri River and has 49 species  (White and
 Bramblett, 1993).

   Human  activities  have   modified  the
channel morphology of the river  much less
110

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                                                 Northern Great Plains Aquatic Assessment
 than  other Northern  Great Plains rivers
 (Silverman and Tomlinsen, 1984).   Effects
 have occurred from  water withdrawal  for
 agricultural purposes since the vast majority of
 all water use in the Yellowstone basin is for
 irrigation  (Montana Department  of  Natural
 Resources and Conservation, 1981).  Water
 diversion structures in the tower Yellowstone
 are known to influence upstream movement of
 paddlefish, shovelnose sturgeon, sauger and
 walleye (White and Bramblett, 1993).

 Cheyenne and Moreau Rivers, South Dakota

    In a survey of the aquatic communities of
 the Cheyenne River within the Cheyenne River
 Indian  Reservation,   14  total   taxa  of
 macroinvertebrates, ranging from 5 to 10 at
 various stations were found (Cheyenne River
 Sioux Tribe, 1997). Densities ranged from 33
 to 382  organisms  per square meter.   The
 diversity index ranged from 1.18 to 2.11, which
 is   considered   to  be   below   the
 recommendations for healthy environments
 (Wilhm, 1970). The upper and lower stations
 were  dominated   by ephemeroptera  and
 trichoptera, while  the middle station was
 dominated by chironomids.
   Twelve species of fish in four families were
 found (Cheyenne River Sioux Tribe,  1997).
 Stations ranged from four to eight species with
 cyprinids dominating.  Since similar plains
 streams support more diversity, it was believed
 that the system was being limited, possibly by
 poor   water   quality   and   a   restricted
 macroinvertebrate community. The poorwater
 quality could have  been the  result of heavy
 metals from historic Black Hills mining.

   The Moreau River within the  Cheyenne
 River Indian Reservation was also sampled for
 aquatic species (Cheyenne River Sioux Tribe,
 1997):  Twenty-two macroinvertebrate taxa
were found, ranging from 10 to 18 at various
stations.  Density ranged from 247 to 3107
organisms per square meter.  The diversity
index ranged  from 1.7 upstream  to 3.18
downstream.  The three upper stations were
dominated by ephemenoptera and trichoptera
and the lowest station by chironomids.  •

    Eighteen fish species were collected from
five families (11 at the highest and lowest
stations and 14 at the two middle) (Cheyenne
River Sioux Tribe, 1997). All were dominated
by cyprinids.

Red River of the North, North Dakota

    The low topographic relief of the Red River
has led to the  installation of dams to reduce
flooding and drainage ditches to carry away
excess water (Goldstein, 1995).  Most of the
dams are small, but there are 450 of them in
the U.S. side of the basin and most discharge
water over the  top,  therefore the impacts are
usually  not great  (Goldstein, 1995).  The
ditching to drain water away is much more
extensive on the Minnesota side (Goldstein,
1995).

   .Neel   (1985)   studied   benthic
macroinvertebrates in the Turtle River.  One
hundred and thirty-three taxa in 16 orders and
58  families were found, with a  total mean
density of 6686 individuals/m2.  They were
dominated  by  the   caddisfly   genera
Cheumatopsyche and  Hydropsyche  which
represented  51%,  corixid  water bugs and
elmid  water  beetles  with  8  and  7%
respectively, and small clams (Pisidium and
Sphaerium),   mayflies  (Stenonema)  and
midges (Chironomidae) at 4% each.  Stoaks
(1975) found a similar community structure in
the Forest River, another tributary to the Red
on   the  North   Dakota  side.     The
macroinvertebrate community of the Red River
are composed of mainly filtering and gathering
collectors (Cummins and Merritt, 1984).

    Cvancara  (1983) listed 12  species  of
pelecypod mussels and  eight  species  of
                                                                                111

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 Chapter 2 - Status of Aquatic Resources

 sphaeriid (pill) clams for the North Dakota part    of the larval fish community below Garrison
 of the Red River. The most common mussels    Dam.
 were  Anodonta  grandis,  Lasmigona
 complanata and Lamps/As radiata.  The most
 common pill clams were Sphaerium lacustre.
 S. striatinum, S. transversum and Pisidium
 compressum.

   Goldstein  (1995) compared the species
 similarities by streams within the Red River
 basin and found they could be categorized into
 five regions. These five were: 1) the Wild Rice
 and Elm Rivers on the North Dakota side; 2)
 the Sheyenne River in North Dakota, the Red
 River mainstem and the Otter Tail, Wild Rice,
 Red Lake and Buffalo Rivers in Minnesota; 3)
 the Maple, Goose, Forest,  Park, Pembina and
 Turtle Rivers in North Dakota and Two Rivers
 in Minnesota; 4) the Clearwater and Roseau
 Rivers in  Minnesota; and 5) the Thief and
 Middle Rivers  in Minnesota. Groups two, three
 and four  had the most commonality, while
 groups one and five had the least (Goldstein,
 1995). The lowest species richness wasjn
 groups one and five with less than twenty
 species.   Group  two had  rivers  with  the
 greatest species richness (<40), while groups
 three and four had between 20 and 30 species
 in their rivers (Goldstein, 1995).

 Missouri River below Garrison Dam

   Wolf,  et al. (1996) studied the larval fish
 community below  Garrison  Dam in  the
 summers of 1993 and 1994.  The abundance
 and diversity was lower than expected given
 the number  of adult fishes found  in  the
 tailwaters  and the number  of larval fishes
 collected in other studies of the Missouri and
 Mississippi Rivers.   They felt that the  low
 abundance and  diversity  were due to  the "„_
 hypolimnetic discharge (forty meters below the
 dam) of cold  water  from  Lake Sakakawea.
The larval fish species found also appeared
 later in the  season than  they  would be
expected.  There had been no prior evaluation

 112

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 Wetland and Riparian  Habitats and Land Cover
                                          rushes,  some  smartweeds or other water-
 31 INTRODUCTION                      loving plants may  be present   Cowardin
                                          (1979) defined wetlands as transitional lands
                                          between terrestrial and aquatic systems where
                                          the water table is at or near the surface or the
                                          land is covered with shallow water.  It  also
                                          must have one or more of the  following:
                                          support, at least periodically, hydrophytes; be
                                          predominantly undrained hydric soil or have a
                                          nonsoil  substrate  saturated with  water or
                                          covered by shallow water at some time during
                                          the growing season each year.
Question 2   What is the extent  and
composition  of riparian  and  wetland
areas? What are the land coverages in
the Assessment Area?

   Wetlands and riparian areas are of vital
importance to wildlife and the functioning of
aquatic systems.  These areas  are also of
great importance hydrologically to the systems
in which  they belong.  The Northern Great
Plains contain  about 10%  of the nation's
wetlands        (U.S.  Natural  Resources
Conservation Service, 1996) and they are of
great significance to the nation and the North
American continent as a whole.

   The present extent, historical and future
trends of these areas are examined, as well as
conditions affecting the functioning of these
systems.    Section  3.1   introduces   the
characteristics and features of wetlands and
riparian areas  in general and the specific
nature of  those in the Northern Great Plains.
Section 3.2 looks at the extent and condition
of wetlands  in the  NGPAA.  Section  3.3
examines  the condition  of riparian areas.
Both of these sections present information on
the changes that have occurred to these areas
as a result of changing hydrology. Section 3.4
discusses the effects of large scale land use
changes and the extent of human  influence on
the Northern Great Plains landscape.

Wetlands

   Wetlands are areas that are inundated or
                                             A way of classifying wetlands is by the
                                          hydrologic systems themselves.  There are
                                          three types of wetland systems that occur in
                                          the Northern Great Plains.  They are riverine,
                                          lacustrine and palustrine.  Riverine are those
                                          associated with rivers and streams. Lacustrine
                                          are associated with lakes  and ponds, while
                                          palustrine are marshes, wet meadows, fens,
                                          potholes,  bogs  and  small  shallow ponds
                                          (Tiner, 1996). In addition, there are classes
                                          within these systems such as emergent, scrub-
                                          shrub  and  forested  (Cowardin,  1979).
                                          Emergent wetlands are dominated by erect,
                                          rooted, herbaceous hydrophytes. Scrub-shrub
                                          wetlands are dominated by  vegetation  less
                                          than 20 feet tall and forested wetlands are
                                          dominated by vegetation taller than 20 feet.

                                             Another method of classifying wetlands is
                                          by the length of time water is standing. The
                                          State of North Dakota utilizes the following
                                          classification system for wetlands to describe
                                          the various types that occur within the State
                                          (North Dakota Department of Health, 1994).
                                          Much of this would probably apply to most
                                          palustrine  wetlands in the  Northern Great
                                          Plains.  Temporary  wetlands  are  shallow
saturated by surface or ground water often .-;. depressions  which  hold^  water  or  are
enough and for a long enough period of time    waterlogged from spring runoff until early
to support (and  under normal conditions do
support) a prevalence of vegetation typically
adapted for life in saturated soil conditions
                                          June.  They frequently reflood during heavy
                                          summer or fall rains. Seasonal wetlands are
                                          depressions which normally hold water from
(Snyder,  1995). Cattails,  willows,  sedges,    spring runoff until mid-July. Semipermanent or
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 Chapter 3 - Wetland and Riparian Habitats and Land Cover
 Intermittent  wetlands are located in well-
 defined depressions or basins and in normal
 years hold water all summer.  Freshwater
 semipermanent wetlands (commonly called
 cattail  sloughs) are  characterized  by  a
 predominance of cattail and bulrush vegetation
 and  scattered  open water areas.   Saline
 semipermanent   wetlands   have   a
 preponderance of alkali bulrush and scattered
 areas of open water. Permanent wetlands are
 located  in   well-defined  basins   which
 characteristically hold water throughout the
 year. They become dry only after successive
 years of below normal runoff and precipitation.
 Freshwater permanent wetlands typically have
 a border of aquatic vegetation and open water
 areas in the interior.    Saline permanent
 wetlands are typically devoid of emergent
 vegetation and exhibit a white,  salt-encrusted
 shoreline.

    In the  Northern Great Plains the  most
 widespread area of wetlands is known as the
 prairie pothole region, an area that includes
 eastern  South  Dakota  and  eastern and
 northern North Dakota. A significant number
 of potholes also exist in northern Montana.
 The prairie pothole region encompasses about
 14% of a larger region of glacial debris, scars,
 and depressions created  by the last ice age
 and covers about 300,000 square miles from
 central Alberta to northwestern Iowa (North
 Dakota Department of Health, 1994).  This
 area was formed when glaciers deposited a
 dense, clayey glacial till, and as the overlying
 ice melted, potholes (kettle lakes) remained
 where  ice  blocks   had  previously  been
 imbedded (Winter,  1989).  The glacial  till
 inhibits  infiltration  of snowrnelt,  causing
 meltwater to  flow  overland  into potholes.
About 25% of the annual precipitation.in North
 Dakota is snow and it accumulates in these
depressions.   When the  snow melts in the
spring the ground is still frozen, so snowmelt
and spring rains do not readily infiltrate into the
soil (Shjeflo,  1968).   Snowmelt  and  spring
 rains are the major source of water to the
 prairie potholes.  Potholes range from less
 than an acre in size to several square miles.
 About 79% of prairie potholes are one acre or
 smaller in size, and more than 66% are less
 than a half acre according to National Wetland
 Inventory estimates (Dahl, 1991).

    The  hydrology and water quality  of
 wetlands  vary over  time  (Winter,  1989).
 Prairie potholes can recharge ground water in
 the spring until evaporation and water uptake
 by plants causes the water level to drop below
 the water table.  At that time, ground water
 begins to flow back into the wetland. Salinity
 of  water  in  the  wetland  increases   as
 evaporation concentrates minerals in the water
 through the summer and freezing concentrates
 them in the winter (LaBaugh, 1989).  In spring,
 snowmelt dilutes  the salinity.  Some prairie
 wetlands are sustained by ground water inflow,
 which  provides a constant, but commonly
 saline source of water.  Other wetlands  are
 sustained only by runoff and in wet  years
 generally  have freshwater,  but during most
 years go  dry.  Some prairie potholes have
 brackish water resulting from a combination of
 ground and surface water.

   The prairie potholes are primarily emergent
wetlands (Stewart and Kantrud, 1973). Water
 must be  present for significant periods to
 create the conditions that support hydrophytic
 vegetation which  can  survive in prolonged
water-logged conditions;  but water does not
 need to be ponded on the  land's surface to
 provide wetlands many  of their functions,
 including  making  them  highly  productive
biologically (Dahl,  1991).

   In  eastern South  Dakota, palustrine
wetlands primarily include emergent wetlands
such  as  marshes  and  sloughs, in which
coarse, herbaceous vegetation like cattails and
bulrushes are predominant;  wet meadows, in
which low, herbaceous vegetation like grasses
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                                                  Northern Great Plains Aquatic Assessment
 and sedges are predominant; and vegetated
 and shallow-water  zones of  stock  ponds
 (Stewart and Kantrud. 1971).  Prairie potholes
 are  the most common type  of palustrine
 wetland in South Dakota. Lacustrine wetland
 areas occur in the numerous glacial lakes in
 the eastern part of the State and in artificial
 impoundments   throughout  the   State.
 Submersed vegetation like widgeongrass and
 pondweed are common in lacustrine wetlands.
 About 90% of the wetlands in  the glaciated
 eastern South Dakota are associated with
 prairie  ponds and lakes (primarily palustrine
 emergent wetlands) and the  remaining 10%
 are riverine and those associated with stock
 ponds (Ruwaldt, 1979).

   Steeper topography, a  better developed
 drainage system and a generally more  arid
 climate  are  factors  that  result  in  fewer
 wetlands in the western part of the NGPAA
 than in the  eastern and northern parts (U.S.
 Geological Survey, 1996b).  About 60% of the
 wetlands in the unglaciated portion of South
 Dakota are  associated with stock ponds (U:S.
 Geological Survey, 1996b).

   Further   south  in  the  Sand  Hills  of
 Nebraska,  wetlands  include  wet meadows
 (where the  water table is at or near the land
 surface) and marshes that are associated with
 lakes (U.S.  Geological Survey, 1996b). Most
 of the  lakes are 10 acres or less  in area,
 average about 5 feet in depth  (McCarraher,
 11977) and  are considered to be palustrine
wetlands. In the central and eastern parts of
the Sand Hills, lakes and marshes are typically
slightly saline, are in hydrologic connection
with ground water and commonly have surface
outlets  (Ginsberg, 1985).  Many wetlands in
the western Sand JHills are strongly, alkaline
and have little or no outflow. Lakes that have
high  alkalinity are found in areas where the
ground  water becomes mineralized as it
moves through the rock formations.
    The glaciated areas of the Northern Great
Plains are susceptible to flooding due to the
small topographic gradient   The  storage
capacity of prairie potholes is very important in
controlling seasonal flooding (U.S. Geological
Survey, 1996b).  Shaw (1993) for example
calculated that the flood crest of 1993 could
have been lowered by two feet at St Louis if
2.2 million acre-feet  of storage had  been
provided, which could have been obtained by
returning less than % of 1% of the drained
wetlands   in   the  basin  to  wetlands.
Depressions in the Devils Lake basin can store
up  to 72%  of  the total runoff in a 2-year
frequency event and 41% from a 100-year
runoff event (Ludden, 1983). In the southern
Red River Valley, Brun, etal. 1981, correlated
increased streamflows with increase in wetland
area artificially drained.

    Wetlands are also important in controlling
polluted  runoff  containing  nitrates   and
pesticides  as  well  as  filtering  sediment
(Robinson, 1995). Restoring just one percent
of a watershed's area to appropriately located
wetlands has the potential to reduce polluted
runoff of nitrates and herbicides by up to 50%
(Crumpton and van der Valk, 1991). However,
it should be noted that under the Clean Water
Act, wetlands are considered to be waters of
the United States, and as such, are not to be
used  to treat  pollution,  except for those
specifically constructed for that purpose.

    Stewart and Kantrud (1973) estimated that
67% of the wetlands (by area) in the Prairie
Pothole region are  seasonally  flooded or
temporarily flooded wetlands. The amount of
snowpack   accumulated  during   winter
determines to what extent a wetland is filled.
Small and temporary wetlands are valuable for
maintaining  biodiversity and wildlife habitat
(Robinson, 1995).  Many  amphibian species
spend  at  least a part of their life in small
temporary  wetland types  and  some  fish
species (such as northern pike) depend on
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 Chapter 3 - Wetlands and Riparian Habitats and Land Cover
 wetlands for part of their life cycle, most often.
 for spawning.

    The wetland habitat provided to migratory
 waterfowl  contributes greatly to the overall
 biodiversity of  North  America (Knopf and
 Samson, 1995). Temporary wetlands that are
 inundated primarily in the winter or early spring
 are  considered  to  be  the  backbone  of
 productivity in the prairie wetland ecosystem
 and temporary and seasonal wetlands tend to
 be the first to provide open water for migrating
 waterfowl (Robinson, 1995).  These wetlands
 are large producers of food supplies such as
 insects, worms, crustaceans and amphibians
 and certain plants. These food resources are
 necessary to complete  migration and  the
 historic wetlands in  the  Great Plains have
 influenced the evolution of shorebird migration
 (this complex of wetlands are required now for
 these birds when migrating from the Gulf of
 Mexico to Alaska) (Skagen and Knopf, 1993).
    These  wetlands  are  also  important as
 breeding  areas themselves.   The  prairie
 pothole region produces at least half of North
 America's waterfowl  and  a large number of
 marsh and aquatic birds (Kantmd, etal. 1989).
 It has been estimated that as many as 5.3
 million  dabbling ducks  depend on small,
 temporary  wetlands  in the prairie  pothole
 region (Robinson, 1995).  Seven bird species
 and subspecies federally listed as threatened
 or endangered are known to use wetlands
 frequently  or  peripherally  in  the  Rocky
 Mountain/Great Plains Region  (Finch and
 Ruggerio, 1993). The Prairie Pothole region
 comprises only 10% of the waterfowl breeding
 area  in  the North  American continent,  but
 produces 50% of the ducks in an average year
 (Smith, et al,  1964) and 23 species of ducks
 have  nested  at least once in North Dakota
 (Faanes and  Stewart, 1982).  Researchers
 have  found an average  of 140 ducks  per
pothole per year in eastern  South Dakota (U.S.
 Geological Survey, 1996b).

    The composition of invertebrate species in
 the  Prairie Potholes is determined by the
 hydrology  of the  wetland  (Kantrud, et al,
 1989).   Seasonally flooded wetlands are
 dominated by invertebrates that can complete
 their life cycle before they dry out, meaning
 that species that can fly, survive drying or
 produce eggs that can survive drying are more
 common  ' (Swanson,   1984);.     Salt
 concentrations  also influence  invertebrate
 fauna - as basins  dry, many become more
 saline and salt-resistant species such as brine
 shrimp may dominate (Swanson, 1984).

 Riparian Areas

   The riparian zone is the area of vegetation
 paralleling   streams  and  rivers  that   is
influenced  by the  presence of water. The
 running water of these ecosystems provides a
 source of oxygen, water and minerals to this
zone and  these communities  are usually
flooded annually and are subject to erosion
and  deposition  of materials  (Mitsch and
Grosselink, 1986).  This provides fora highly
productive system due to this convergence of
energy and materials.   The riparian corridor
encompasses the  stream channel and the
terrestrial landscape from the highwater mark
towards the uplands where vegetation may be
influenced  by  elevated  .water  tables  or
flooding, and by the ability of the soil to hold
water (Naiman, et al. 1993).  The riparian
corridor is often small in headwater streams
and in mid-sized streams, the corridor is larger,
being represented  by a distinct  band  of
vegetation whose width is determined by long-
term (>50 year)  channel  dynamics and the
annual  discharge  regime (Naiman,  et  al.
1993). Riparian corridors on large streams are
characterized  by  well-developed  complex
floodplains  with  long  periods of seasonal
flooding, lateral  channel migration, oxbow
lakes in  old  river channels,  a  diverse
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                                                  Northern Great Plains Aquatic Assessment
vegetative  community  and   moist   soils
(Naiman, etal. 1992). The diversity of riparian
corridors  is  maintained  by  the natural
disturbance  regime,   the   nature  of  the
disturbance (floods, fire, landslides, debris
torrents, channel migration} and the ability of
the biotic system  to  adjust  to  constantly
changing conditions (Kalliola et ai. 1992).

   In the Northern Great Plains, especially in
the west,  riparian  zones are  extremely
important for wildlife and basically function as
oases (Mitsch and Grosselink, 1986). Riparian
areas are an example of the edge effect; there
is  usually more wildlife here  than in the
uplands. The reasons for the greater wildlife
diversity include the predominance of woody
communities  (nesting  and roosting  sites,
shading of stream, production of  leaf litter
adds to organic input to stream), presence of
surface water and soil moisture, diversity and
interspersion of habitat features and corridors
for dispersal and migration of animals (Mitsch
and Grosselink, 1986).
                                     «

   Riparian zones support disproportionately
large numbers of species  compared to the
relatively tiny area they occupy (Naiman, et al.
1993).  These areas may contain the majority
of a region's amphibians and reptiles (Erode
and Bury,  1984).  Many  species  of  small
mammals, bats, songbirds, amphibians and
reptiles  reside solely  in  riparian habitats
(Seabloom, et al. 1978; Johnsgaard, 1979;
Erode and Bury, 1984).  In the Great Plains,
73% of 325 breeding bird species are reported
to use  riparian woodlands and  45% (117
species) of 260  regular  breeders nest  in
riparian areas  (Johnsgaard, 1979).  Riparian
habitats are valuable in the spring and fall as
migratory corridors Jor songbirds (Stevens, et
al. 1977) and as staging areas for whooping
crane and sandhill cranes (Frith, 1974).  In the
Northern  high  plains,  cavity  nesters were
found to be more abundant in cottonwood-
dominated vegetation types than in three other
vegetation types  (Hopkins,  et al.  1986).
However, expansion of riparian areas onto the
Great Plains, as a result of fire suppression
has created continuous corridors, facilitating
dispersal  and  permitting  faunal  mixing  of
previously isolated species between eastern
and western United States (Knopf and Scott,
1991).

   Riparian zones are highly valued as areas
of wildlife habitat, recreation, timber, livestock
forage and water,  travel  passageways for
animals and humans, buffer zones between
managed and natural areas; natural filters of
surface runoff  and  waste,  stabilizers  of
shorelines and stream channels, interceptors
for precipitation and insulation for streams
(Melton, etal. 1984).

   Before the  construction  of dams and
reservoirs, rivers of the Great Plains were
dynamic systems with widely fluctuating flows,
large bed loads of sand and silt, numerous
unvegetated  islands and  multiple channels
(Cross and Moss, 1987; Graf,  1988). The
locations of point bars, islands and channels
shifted frequently because of the high spring
flows and  large bed loads of sand and  silt
(Cross and Moss, 1967).   Reservoirs have
altered these characteristics. Water releases
from  these  reservoirs follow  a seasonal
pattern: spring runoff is held and released as
needed by irrigators and municipalities through
the remainder  of the year.  The result is  a
reduction  in spring flows (floods) and  an
augmentation of low flows  during the summer
and fall.   This change in the hydrology is
leading, in many places on the plains to a loss
of the native cottonwood riparian communities
and potentially to the local loss of  species
dependent  upon  them,  especially  cavity
nesting  birds   (Knopf and  Scott,  1990).
Reservoirs also trap sediment because the
reduced velocity causes sediment to settle out,
consequently, water released from reservoirs
 is relatively sediment free.   According to
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Chapter 3 - Wetlands and Riparian Habitats and Land Cover
Schmulbach, et al. (1992) the sediment load at
the mouth of the Missouri River is now 50% of
what it was before closing of the mainstem
dams (125 millions tons now as opposed to
250 million tons before the construction of the
dams).

    In alluvial rivers, the moderated flows and
removal  of  sediment  degrade  riverbeds
downstream from reservoirs (Hammad, 1972;
Petts, 1979; Williams and Wolman,  1984;
Graf,  1988).    In  braided  river  channels,
channels are cut off and multiple channels are
reduced to a single channel (Williams,  1978;
Graf, 1988). The degradation associated with
the removal of sediment in the Missouri River
is the most severe  after the lowest dam
(Gavins Point) since this is where the river
attempts to  recapture   its  sediment load
(Schmulbach, et al. 1992). Associated with
the incision of the single remaining channel,
side channels and backwaters are reduced in
abundance or eliminated due  to lowering of
water levels.  Side channels  are departures
from the main channel  in which there is  a
current during  normal river stages and are
important to fishes (Schmulbach, et al. 1975;
Ellis, et al. 1979).  Backwaters have  a low
current velocity and are partially  separated
from the main channel by bars  that were
formerly  islands.    The  degradation  of
backwaters is significant, because they tend to
have more diverse fish assemblages and are
important habitats in  the life cycle of many
native fishes (Carter, et al. 1985).

    Other impacts to  riparian  areas include
ground water pumping from alluvial aquifers,
livestock grazing, land clearing for agriculture
or  to increase water  yield,  mining, road
development,  recreational   demand, fire,
elimination of native organisms such as beaver
and  introduction   of   exotic  organisms
(Stromberg, 1993;  Busch and Scott,  1995).
Livestock are  an  important  factor  in the
degradation  of riparian areas in the west,
including the Northern Great Plains. Livestock
tend to congregate in riparian areas, eating
vegetation and trampling streambanks (Manci,
1989). This leads to erosion and sedimentation
and increases in stream temperatures.

3.2 WETLAND HABITAT CONDITION

Introduction
            i
   This section looks  at the  extent  and
condition of wetlands in the Northern Great
Plains. The areal extent of historical wetlands
are compared with the present extent and the
causes for the loss are discussed. The water
quality of wetlands is discussed, including both
natural and  human influences.

Key Findings

•The greatest concentration of wetlands in the
NGPAA occur in the  Prairie Pothole region of
ND, SD and MT.
•73% of historical wetland acres remain in
Montana; 55% in North Dakota; 65% in South
Dakota; 65% in  Nebraska; and about 60% in
Wyoming.
•Most wetland losses have been the result of
conversions for agriculture.
•The greatest losses since presettlement by
percentage have occurred in North Dakota,
with the most extensive  drainage occurring in
the Red River Valley.
•Recent wetland losses have been reduced to
less than 3% (over a ten year period) in most
parts of the NGPAA. However, in many parts
of the NGPAA, increases in wetland acreage
are being noted.
•Recent changes (since 1980s) have  seen
wetland losses  the Little  Missouri  basin,
western North and  South Dakota,  the  Red
River Valley, the lower Yellowstone,  Niobrara
and  Cheyenne  Rivers.   Recent gains  have
been recorded in the Milk, Upper Yellowstone,
Powder, Belle Fourche, Loup, Platte, James
and Sheyenne River basins.
118

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                                                  Northern Great Plains Aquatic Assessment
 •The Sand  Hills  and  northeastern North
 Dakota  contain  the  largest  amounts  of
 palustrine wetlands and the least amounts
 occur in western and central South Dakota.
 •Increases  by  percentage  in  palustrine
 wetlands from 1982 to 1992 occurred in the
 western  and eastern portions of the NGPAA.
 Decreases  have occurred in  much of the
 central NGPAA, with the largest  in western
 North Dakota.
 •Wetland water quality is impacted mainly from
 siltation  from soil  erosion  from  cropland.
 Pesticides  can also impact wetland water
 quality in cropland areas.
 •The Upper Missouri River (above Sioux Falls)
 has 74% of the mapped wetlands of the entire
 river, 53% of which occur in the  four major
 deltas of Fort Peck, Lake Sakakawea, Lake
 Oahe and Lewis and Clark Lake. The Missouri
 River from Gavins Point Dam to Ponca has 90
 acres of wetlands per mile and is the most
 natural  of  the reaches  below  Fort Peck
 Reservoir.

 Data Sources

   The  information in  this section  was
 obtained from the  U.S.  Fish  and Wildlife
 Service's National  Wetlands Inventory,  the
 U.S. Geological Survey- Biological  Resources
 Division, the Natural Resources Conservation
 Service's National  Resources Inventory, the
 U.S. Environmental Protection Agency's Index
 of  Watershed  Indicators  and  from  the
 literature.   Much information was obtained
 from the publication Prairie Basin Wetlands of
 the Dakotas (Kantrud, etal. 1989).

 Data Quality

   The information, on historical and recent
wetlands losses (Figures 3.2.2 and 3.2.3) were
 derived  from  EPA's  Index  of Watershed
 Indicators,  which   in  turn  obtained  its
information  by compiling  data  from  the
 National Wetlands Inventory and the National
Resources Inventory. These two systems use
different hydrologic accounting units (8-digit
versus 6-digit) and have different sampling
methods.  The IWI interpolated  the 6-digit
information into  8-digits, therefore there is
error associated with it.  In addition, the NRI
does  not collect  data on  federal  lands.
Furthermore,  the  NWI  data Is reported by
state, so that there is less reliability compared
to historical data  for watersheds that  cross
state fines. The NWI database has not been
completed for the entire NGPAA.  Maps are
not completed for most of Montana and  maps
that have  been completed for southwestern
North Dakota, western South Dakota and
eastern  Wyoming  have not been digitized.
The only areas in the NGPAA with completed
electronic versions of NWI maps  are central
and eastern  South Dakota,  most of  North
Dakota,  most of  Wyoming  and  National
Grassland areas in western South Dakota and
eastern Wyoming.

Spatial Patterns and Trends

   Figure 3.2.1 presents an estimation of the
concentration  of  palustrine  wetlands ' by
1:250,000 quadrangle.  This estimation was
derived by determining the area of palustrine
wetlands in a sample of 1:24,000 quadrangles
in each larger 1:250,000 quadrangle. These
wetlands were originally mapped under the
National Wetlands Inventory.  The  map is
meant to  show  the relative  amount  on a
regional scale, not  actual numbers.   Not
surprisingly, the prairie pothole areas of South
Dakota,  North Dakota and Montana have the
greatest palustrine wetland area.  The large
blank area in eastern Montana is due to  a lack
of completed wetland information.

   Figure 3.2.2 depicts the rate of wetland
loss  based on long-term (historical)  losses
(i.e., from the  1780s  to the  1980s). This
information is derived  from EPA's Index of
Watershed Indicators, but the presentation has
                                                                                  119

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 Chapter 3 - Wetlands and Riparian Habitats and Land Cover
 been  changed  from a  relative ranking of
 wetland loss to percentages (however,  see
 cautions under Data Qualify and Gaps). The
 greatest historical losses have been in North
 Dakota with losses between 40 and 50%. The
 larger number of wetlands there,  however,
 means that even with losses that high, there is
 still  a  significant  amount  of  wetlands
 remaining.  The least historical losses have
 been in large parts of Montana, South Dakota
 and Nebraska.  As can be seen  in Figure
 3.2.3,  recent (since 1980s)  large gains in
 wetlands have occurred in Montana (Milk and
 Upper Yellowstone basins), with smaller gains
 in Wyoming (North Platte,  Powder, Tongue
 and Belle Fourche  basins), Nebraska (Loup
 and Platte basins) and the  James  and
 Sheyenne basins in North and South Dakota.
 Wetland losses have  occurred  recently in
 much of central and western South Dakota,
 central and western North Dakota plus the Red
 River Valley, the lower Yellowstone basin in
 Montana, the Niobrara in Nebraska and the
 upper Cheyenne in  Wyoming.  The greatest
 losses have occurred  in the Little Missouri
 River basin. According to the information
 available   from   the  National   Wetlands
 Inventory,  the  EPA's  Index  of Watershed
 Indicators and the National Resource inventory
 of the NRCS, it appears as though the trend of
 wetland loss is slowing and is  reversing in
 some areas.

    The  amounts   in  acres  of  palustrine
 wetlands according to NRCS are presented in
 Figure 3.2.4. The Sand Hills and northeastern
 North Dakota are areas with large amounts of
 palustrine wetlands (MLRAs 65,55A, 55B and
 53B). The least amounts occur in western and
 central South Dakota. The darkest areas on
the map in the northeastern  portion of the
 NGPAA reflect the  location  of the prairie
pothole  region.   The Red River Valley has
notably  less than  adjacent areas  due  to
extensive drainage.
    The  percentage change  in  palustrine
 wetlands from 1982 to 1992 according to the
 NRCS is presented in  Figure  3.2.5.  Slight
 decreases  have  occurred in  much  of the
 central NGPAA, with the largest in western
 North Dakota in MLRA 58C (Northern Rolling
 High Plains - Northeastern Part).  Increases
 occurred in the western and eastern portions
 of the NGPAA, with the greatest increases in
 the Black Hills.
          j

 Montana

    In Montana there are 840,000 acres of
 wetlands, which is 0.9% of the State (Dahl,
 1990).   Most of these are  palustrine.  In
 eastern Montana wetlands are fresh and saline
 marshes and greasewood scrubland adjacent
 to rivers and in unglaciated parts of eastern
 Montana (U.S. Geological Survey, 1996b).
 Wetlands occur in floodplains of streams in the
 Missouri  and  Yellowstone basins and are
 commonly   associated  with   constructed
 livestock ponds. In glaciated areas of northern
 Montana wetlands are predominantly  prairie
 potholes  (U.S. Geological Survey, 1996b).
 About  73% of Montana's predevelopment
 (historical)  wetlands remain (Dahl,   1990).
 Most  wetland  losses  have been due to
 conversion  of  wetlands  to   croplands,
 particularly  in  the  prairie pothole region of
 northern Montana. As of the mid-1980s about
 20,000 acres of prairie in eastern Montana had
 been artificially drained  for agriculture (Dahl,
 1990).

 North Dakota

   Most of North Dakota's remaining wetlands
 are located in the Prairie Pothole region, which
extends from  the MissouriJDoteau in central
 North Dakota eastward to the Red River Valley
 (North  Dakota Department of Health,  1994).
Wetland losses (by acreage) have not been as
severe in North Dakota as in other parts of the
region (North Dakota Department of Health,
120

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Figure 3.2.1 Concentration of Palustrine Wetlands in the Northern Great Plains

-------
                                                                                    Percent Historical
                                                                                       Wetland Loss
Figure 3.2.2 Historical Wetland Loss in the Northern Great Plains {1780s to 1980s) from the National Wetlands Inventory

-------
                                                                                  Percent Recent
                                                                                 Wetland Changes

                                                                                    j    | -3 - -1.5
                                                                                         •1.5-O
                                                                                         0-3
                                                                                         3.1 -11
Figure 3.2.3 Recent Wetland Changes (between 1982 and 1992) as Measured by the National Resources Inventory

-------
                                                                     Palustrine Wetlands
                                                                            Acres
                                                                         iioo-soooo
                                                                         50001 - 100000
                                                                         100001 -2SOOOO
                                                                         250001 • SOOOOO
                                                                          500001 • 12SOOOO
Figure 3
.2.4 Amount of Palustrine Wetlands in the Northern
                                             Great Plains by Major Land and Resource Area

-------
                                                                               Percent Change in
                                                                               Palustrine Wetlands
                                                                                    •16--S
                                                                                    •S-O
                                                                                    O- 10
                                                                                    > 10
Figure 3.2.5 Percent Change in Palustrine Wetlands between 1982 and 1992 in the Northern Great Plains

-------
 Chapters- Wetlands and Riparian Habitats and Land Cover
 1994).   However,  drainage, sedimentatioYi;
 nutrient  enrichment  and   pesticide
 contamination threaten wetland integrity (North
 Dakota   Department   of   Health,   1994).
 Originally, there were about 5 million acres of
 wetlands in the State (11% of the State), but
 by the 1980s wetlands there were  only 2.7
 milliion acres '(6%  of  the  State),  a  45%
 reduction (Dahl,  1990).   Recent statewide
 estimates of losses continue at 1000 to 2000
 acres per year (North Dakota Department of
 Health, 1994).  According  to Stewart and
 Kantrud (1973) there are 2.2 million  acres of
 wetlands  (81% of the State's wetlands) within
 the  prairie pothole  region of North  Dakota.
 Approximate wetland numbers and areas by
 water regime were estimated at  698,000
 temporary (113,000  hectares),   1,474,000
 seasonal  (583,000  hectares), and  127,000
 semipermanent (345,000 hectares).

    The most extensive drainage of wetlands
 in North Dakota has occurred in the Red River
 Valley where 1.2 million acres of wet meadows
 have been drained (U.S. Geological  Survey,
 1996b). A survey for North Dakota stated that
 10.6% of the area of  all  privately owned
 natural basin wetlands in the Prairie  Pothole
 Region of the State were drained from 1966 to
 1980 (Kantrud, et al. 1989). The survey did not
 include temporary basins, so the loss  rate is a
 conservative estimate (Kantrud, etal. 1989).

 South Dakota

   The most prevalent wetland type in South
 Dakota is the palustrine emergent wetland (the
 prairie pothole).   South  Dakota once  had
 2,735,100 acres of wetlands, today 1,780,000
 remain, which represents about 3.6% of the
 State, a loss of 35% (Dahl, 1990).  However,
 according  to the 1992 National  Resources
 Inventory  conducted  by the U.S.  Natural
 Resources Conservation Service, 3,004,400
acres of wetland were found (South  Dakota
Department  of Environment and  Natural
 Resources, 1996). Ruwaldt (1979) estimated
 from a wetland inventory in 1973-4 that 71 % of
 South Dakota's wetlands were palustrine, 19%
 were  mixed   palustrine  and  lacustrine
 associated with prairie ponds and lakes and
 stock ponds and 10% were riverine.

    Agricultural conversions have accounted
 for most wetland losses in South Dakota (U.S.
 Geological Survey, 1996b).   Northeastern
 portions of South Dakota have had relatively
 low drainage rates (1.5% of area of wetlands
 destroyed), whereas rates were as high as
 7.5% in southeastern South Dakota (Kantrud,
 et al. 1989). Wittmier (1982) estimated that
 34,505 hectares of temporary, seasonal, and
 semipermanent basins have  been drained in
 South Dakota since 1964.

 Nebraska

    The estimated wetland  acreage in the
 Sand Hills in 1980 was 1,322,451 acres (U.S.
 Geological Survey, 1996b).   This  included
 112,478 acres of open water wetlands, 64,521
 acres  of  marshes,  1,130,954  acres of
 subirrigated meadows and  14,498  acres of
 riparian wetlands.  Nebraska as a whole has
 lost about lost  about 1 million acres (35%) of
 the State's original wetlands (Dahl, 1990), with
 agriculture conversions being the  principal
 cause of  these. losses.    Agricultural
 conversions account for the loss of 28,000
 acres (15%) of the original wetlands in the
 Sand Hills (U.S. Geological Survey, 19965).

 Wyoming

    Wetlands in Wyoming cover about  1.25
 million acres, or 2% of the State (Dahl, 1990).
Twenty-six percent of these are  palustrine,
35% are mixed lacustrine  and palustrine, 9%
 lacustrine and 30% are riverine (U.S. Fish and
Wildlife  Service,   1955).    This  estimate,
however,  did not include much of the plains.
Between the 1780s and 1980s Wyoming lost
126

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                                                  Northern Great Plains Aquatic Assessment
38% (by area) of its wetlands (Dahl, 1990).

Wetland Water Quality

    The primary cause of wetland degradation
in the Prairie Pothole Region (and probably for
most wetlands in the Northern Great Plains) is
agriculture (Finer 1984). The most common
form of degradation is from siltation caused by
soil erosion from adjacent cropland (Kantrud,
et al.  1989).  Row crops generally result  in
more  soil erosion than small grains, because
of the additional cultivation required during the
growing season (Kantrud, et al. 1989).

    Agricultural   chemicals  contribute  to
degradation of wetland water quality. Most of
the cropland  in the Dakotas is treated with
herbicides, but insecticide use is restricted
primarily to sunflowers, which are now more
widely grown (Kantrud, et al. 1989).  Kantrud,
et al.  (1989) thought that the potential for
agricultural chemicals to enter prairie wetlands
and impact wildlife was high, particularly for
the most toxic and widely  used  insecticides
(Grue et al. 1986). The impact of herbicides on
prairie wildlife is indirect and comes primarily
from elimination of food and cover (Hudson et
al. 1984; Hill and Camardese 1986).

    Some  natural characteristics  of wetlands
affect their water quality.  When anaerobic
conditions occur in either summer or winter
they are referred to as summerkill or winterkill
(Kling, 1975; Nickum, 1970). Summerkill lakes
produce  high midsummer populations  of
planktonic algae that later die, causing oxygen
depletion and a summer fish kill (Kling, 1975).
Winterkills occur when snow cover on the ice
reduces photosynthesis, resulting in oxygen
depletion  within the  water (Kantrud, et al.
1989) and increases in total dissolved solids,
carbon dioxide, ammonia and hydrogen sulfide
can also occur.

   The  location of wetlands with respect to
soils  and geology can affect water quality
(Kantrud, et al. 1989). Wetlands located in
outwash (highly permeable sand and gravel)
had higher specific conductance  and higher
concentrations of sodium, potassium, sulfate
and alkalinity (Kantrud, et al.  1989).  Those
located on till (low permeable silt and clay) had
higher concentrations of calcium (Swanson et
ai. 1988).  Wetlands that are saline in North
Dakota tend to be located in outwash and are
topographically low, serving as ground water
discharge  areas  that   concentrate   salts
(Kantrud, et al. 1989).

Missouri River Wetlands

    In the entire Upper Missouri River (from the
inlet to Fort Peck Reservoir to Sioux City) there
are 306,000 acres of floodplain (U.S. Army
Corps of Engineers, 1994).  The  upper river
has 55% of the total floodplain acreage of the
Missouri  River,  but  74%  of the mapped
wetlands, 53% of  which  occurs  in the four
major  deltas  (inlets  to  Fort Peck,  Lake
Sakakawea, Lake Oahe and Lewis and Clark
Lake). These four deltas supported more than
59,000 acres of wetlands in 1991 (72% of all
wetlands along  the  upper  river).    Delta
wetlands expand during  droughts because
plants take over receding shoreline. However,
delta  wetlands  are  less diverse wetland
complexes  than  riverine reaches because
fluctuating water levels  preclude  trees and
other species intolerant of long  periods of
inundation.  In the major deltas, wetland types
vary,  ranging from  39% scrub-shrub/56%
emergent  in  Lake Oahe  to 55%  scrub-
shrub/37% emergent at Fort Peck. Forested
wetlands range from 8 to 15% in the deltas.
The wetlands of the delta in Lewis and Clark
Lake are 83% emergent.

    In the Missouri  River from Fort Peck Dam
to Lake Sakakawea abandoned channels and
several oxbow lakes remain in the floodplain
(U.S. Army Corps of Engineers, 1994).  Fifty-
                                                                                  127

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 Chapter 3 - Wetlands and Riparian Habitats and Land Cover
 six percent of the wetlands in this reach are
 emergent  characterized by large stands of
 reed canarygrass and common reed and 39%
 are scrub-shrub characterized by cottonwood
 and  willow.  Scrub-shrub wetlands consist
 primarily of thin bands of sandbar willow along
 the shorelines.

    The Missouri River from Garrison Dam to
 Lake Oahe is restricted to one main channel
 with very few side channels (U.S. Army Corps
 of Engineers,  1994).   Emergent  wetlands
 comprise 68% of the wetlands and consist of
 quackgrass, bluegrass and mints with  reed
 canarygrass and slough sedge in some areas.
 Most of the rest  of  the wetland acreage is
 scrub-shrub at 22% consisting of cottonwood,
 indigo bush and peachleaf willow. This reach
 supports only 38 acres/mile of wetland. Large
 diurnal and seasonal variations  in river flow
 due to peaking operations of the  dam impede
 wetland  establishment  and  survival  and
 islands are periodically scoured.

    From Fort Randall Dam to Lewis and Clark
 Lake has few side channels and 30% of the
 wetland  acreage  is  forested, consisting of
 peachleaf willow and cottonwood with some
 sandbar willow.   Fifty-six  percent of the
 wetland  acreage  is  emergent  with  reed
 canarygrass and common reed and extensive
 stands of cattail and softstem bulrush  have
 developed in old channels and backwaters.

    The Gavins Point Dam to Ponca reach has
 90 acres of wetlands per mile and is the most
 natural of all the  reaches below Fort  Peck
 Reservoir. Emergent wetlands cover 46% and
 scrub-shrub cover 49% of the area. Emergent
wetlands have reed canarygrass  with cattails
in  old channels, backwaters and near islands '
and scrub-shrub wetlands have dense stands
of  sandbar willow  with peachleaf willow and
cottonwood in less frequently flooded areas.
 Future Trends

    The rate of wetland loss has slowed to less
 than 3% per year and is increasing in many
 areas  as a result of wetland protection laws
 and incentives. As long as these protections
 remain in place, this condition is expected to
 improve or at  least hold stable.  The water
 quality problems in wetlands are largely the
 result  of, nonpoint  source  pollution  from
 agriculture. Efforts to impact nonpoint source
 pollution will affect the quality of the water in
 wetlands.

 3.3 RIPARIAN HABITAT CONDITION

 Introduction

    This section discusses the condition and
 extent  of riparian areas and riverine wetlands
 in the NGPAA. Several studies are highlighted
 that examined the condition of riparian areas
 along some of the major streams in the area
 and the effects  that dams  and diversions
 (hydromodification) have had on them.  The
 extent  and  changes in riverine wetland area
 are also presented.

 Key Findings

 •Eastern Montana has the  most   riverine
wetlands according to the NRCS. Central and
 eastern North Dakota, northeastern Wyoming
 and much of South  Dakota  have the  least
 amounts of riverine wetlands.
 •The greatest decreases in riverine wetlands
during the period 1982 to 1992 have occurred
in northeast Wyoming and  central South
Dakota.   The  greatest  increases   have
occurred in the Black Hills and Sand Hills.
•Several studies on  riverine habitat in the
Missouri, Marais  and North  Platte  Rivers
indicate  that   establishment  of   young
cottonwoods has  declined  in  many areas
downstream from dams.
128

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                                                 Northern Great Plains Aquatic Assessment
 •This loss of cottonwood regeneration is due
 to alterations of the magnitude of peak river
 flows. These reductions in peak flows cause
 a loss of new alluvium deposits, which are
 necessary for establishment of cottonwood
 seedlings.
 •The loss of high flows has also cut off access
 to seasonally flooded backwaters, which are
 spawning, nursery and feeding areas for fish
 and feeding and breeding areas  for migratory
 waterfowl.

 Data Sources

    Much of the information  in  this section
 came from literature surveys of research done
 on the riparian areas  in the Northern Plains.
 Many of the studies focused on the effects of
 dams  and   diversions.   The  Biological
 Resources Division of  the U.S. Geological
 Survey supplied information from the National
 Wetlands Inventory.  The Natural Resources
 Conservation Service's National Resources
 Inventory data was also used.

 Spatial Patterns and  Trends

    Figure 3.3.1  presents the  amounts  of
 riverine wetlands by NRCS'  major land and
 resource areas (MLRA). The most exists in
 eastern  Montana (MLRA 58A   - Northern
 Rolling High Plains - Northern Part). The least
 is in central and  eastern  North  Dakota,
 northeastern Wyoming  and  much of South
 Dakota  (outside of the southeastern  and
 northwestern parts).  The amount of riverine
wetlands is not synonomous with amounts of
 riparian area.  However, in the absence of
 good riparian area information is  can serve as
 one measure of the condition of the floodplain
 habitat.  It is also important to compare  the
 scale on  this figure versus the  amounts of
palustrine wetlands in Figure 3,2.4. Palustrine
wetlands  are considerably  more common
overall.
   The change in riverine wetland  acreage
from  the  period 1982 to 1992  by NRCS
MLRAs is presented in Figure 3.3.2.  The
greatest  decrease  was. in   northeastern
Wyoming and central South Dakota  (MLRAs
58B and 63A) with losses  between 5 and 11
percent.  The greatest increase was in the
Black Hills and the Sand Hills (MLRAs 62 and
65) with gains  of  more  than 10  percent.
Moderate increases  occurred in large areas
throughout the NGPAA in  northern Montana,
northern and eastern North   Dakota  and
western South Dakota and Nebraska.

   Figure 3.3.3  depicts the miles of streams
within each watershed impacted by vegetation
removal or streambank alteration as reported
by in the state 305b reports. Montana reports
this impact more  than the other states, with the
Yellowstone, Missouri, Milk and the  Powder
Rivers having watersheds with more than 100
miles   of  assessed  streams  impacted.
However, the North Platte-Scottsbluff, the Red
River and parts of Wyoming also are impacted
significantly. Much of North Dakota, South
Dakota and Nebraska are  not reported to be
impacted   by   streambank   alteration  or
vegetation removal.  This could be an artifact
of how closely this impact is montored in these
states.

   The following is a summary of a number of
studies  regarding  the   effects   of
hydromodification on several aquatic systems
within the Northern Great Plains Assessment
Area.  Hydromodification includes the loss of
spring flood flows due to dams and diversions,
the addition of flow  in  late  summer  from
irrigation  return,  channelization and  the
removal of riparian vegetation.

Laramie River/Greyrocks Dam, Wyoming

   Patton  and  Hubert (1993) studied the
changes in the Laramie  River downstream
from Greyrocks Reservoir.  The Laramie River
                                                                                129

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 Chapter 3 - Wetlands and Riparian Habitats and Land Cover
 once had numerous shallow side channels but
 few remain. The side channels that currently
 exist provide shallow riffles that are important
 to small-stream fishes but such riffles and side
 channels  are   becoming   rare.     Fish
 assemblages were sampled from the main
 channel,  remnant   side  channels  and
 backwaters.  Species richness and diversity
 were greatest in backwaters and greater in the
 main channel than the side channels.  The
 side channels contained fishes common in
 small streams,  the main channel contained
 fishes usually associated with larger streams.
 The findings suggest that the side channels in
 the  Laramie River,  while not having  the
 greatest diversity compared with other stream
 habitats, are particularly important to some
 species, including white sucker, johnny darter
 and Iowa darter. In addition, two species that
 are rare in the Laramie River, longnose dace
 and plains topminnow, were collected only in
 side channels. The loss of side channels due
 to the dam could affect the future of these
 fishes in the river.
                                      *

 Missouri River, All States

    The condition of the riparian zone of the
 Missouri  River  and  the impacts  of the
 mainstem dams upon it is reviewed in the U.S.
 Army Corps of Engineers Draft Environmental
 Impact Statementforthe Missouri River Master
 Water Control Manual (U.S. Army Corps of
 Engineers, 1994)  and the U.S.  Fish  and
 Wildlife Service  Biological Opinion on  that
 Draft EIS (U.S.  Fish  and Wildlife Service,
 1994).

    Cottonwood and willow have historically
 dominated the Missouri River floodplain forests
 because of the highly dynamic nature of the
 river channel (Johnson, et al. 1976).  In the
 past, as the river meandered, it deposited
 alluvium on the inside of river curves (point
 bars), but on the opposite side it eroded banks
often covered with forest vegetation (Johnson,
 et al. 1976).  These point bars were optimal
 habitat for the establishment of cottonwood
 and willow seedlings,  which need  moist
 mineral soil located just above the river stage
 (Noble, 1979). In addition, seed dispersal of
 cottonwood and  willow occurred primarily in
 June, coinciding with  receding spring  water
 levels  and the exposure of recent alluvial
 deposits   (Fenner,  et  al.   1985).    Only
 cottonwood and willow germinate and persist
 under these conditions.  If  such  sites with
 young  seedlings  remained   uneroded,
 cottonwood-willow forests  developed.   If
 meandering by  the river were to  miss a
 particular forested area for a century or so, the
 cottonwood-willow forest would be replaced by
 green ash, box elder,  american elm and bur
 oak (which can reproduce in the cottonwood
 understory) (Johnson, etal. 1976). Eventually,
 as the river channel shifted back across the
 floodplain,  established forest was  lost to
 erosion on the outside of the bend and new
 cottonwood forests became established inside
 (Johnson, etal. 1976).  Since cottonwood and
 willow   cannot   reproduce  under  forest
 conditions,  river meandering is necessary to
 maintain these communities on the floodplain.

    The mainstem dams have dramatically
 reduced  the  rate of  river  meandering by
 altering the magnitude of peak flows (Johnson,
 et al. 1976). Flow alteration and a decline in
 the meandering rate would cause a reduction
 in the amount of new alluvium produced for
 cottonwood and willow regeneration and an
 increase   in  the  successional  ages  of
 established forests due to an extension in their
 lifespans (Johnson, et al. 1976).   The  net
 effect  would be to  reduce the  area of
 cottonwood forests in, favor of species of the
 later successional types.  This change would
 have major consequences  because forests
with cottonwood  as a dominant  have  the
 maximum   diversity   of  vascular  plants
 (Keammerer, et al. 1975) and birds (Hibbard,
 1972).  Peaks in species number and
130

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                                                                                  Riverine Wetlands,
                                                                                       Acres

                                                                                       600 - 25000
                                                                                       25001 -50000
                                                                                       50001 -100000
                                                                                       > J00000
Figure 3.3.1 Amount of Riverine Wetlands in the Northern Great Plains by Major Land and Resource Areas

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                                                                                  Riverine'Wetlands,
                                                                                      % Change
                                                                                       •U "5
                                                                                       -5-0
                                                                                       0- 10
                                                                                       10-20
Figure 3.3.2 Percent Change in Riverine Wetlands between 1982 and 1992 by Major Land and Resource Areas

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                                                                                          Streambank
                                                                                          Modification
                                                                                         Impacts, miles

                                                                                          |   | Not Assessed
                                                                                              51-100
                                                                                              > 100
Figure 3.3.3 Miles of Assessed Streams in Each Watershed Impacted by Riparian Vegetation Removal and/or
Streambank Alteration

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 Chapters - Wetlands and Riparian Habitats and Land Cover
 population sizes of birds are reached in older
 successional forests because  of their high
 vertical  stratification (Hibbard,  1972),  and
 additionally, the large size and  hollow trunks
 and branches of older cottonwoods provide
 habitat  for  cavity  nesting birds  such  as
 woodpeckers and wrens (Hibbard, 1972). The
 smaller size and sounder limbs of tree species
 in the newly dominating forests will not provide
 as many nesting cavities (Johnson, 1992).

    In the upper Missouri river there is reduced
 cottonwood  vigor,   branch  loss and high
 mortality in mature riparian cottonwood forests
 caused  by  reduced  frequency of  spring
 flooding and lowered water table (U.S. Army
 Corps of Engineers, 1994). Portions of the
 Missouri River in central Montana are generally
 devoid of cottonwood seedlings and most of
 the trees present are mature or overmature
 (Behan,  1981). Despite this, however, Busch
 and Scott (1995) referred to the  stretch of the
 Missouri River between Fort Benton and Fort
 Peck Reservoir as one of the last semi-
 naturally functioning reaches along the entire
 Missouri River. It is also a National Wild and
 Scenic River.  While some of the water in this
 part of the river is regulated by dams, this
 section is above all of the larger dams. The
 riverine reaches in the Upper Missouri River
 (as opposed to the reservoirs) contain 23,300
 acres of wetland and 49,650 acres of riparian
 vegetation  and the  riverine reaches support
 72% of the riparian  vegetation  in the upper
 river (U.S. Army Corps of Engineers, 1994).

    In the reach from Fort Peck Dam to Lake
 Sakakawea there are many sandbars, islands
 and side channels (U.S.  Army Corps  of
 Engineers,  1994).   The riparian vegetation
 consists of cottonwood and green ash and has
 a density of 67 acres/mile. This is lower than
for any other part of the upper reach, due to
clearing.  In the Garrison Dam to Lake Oahe
reach, the riparian forest comprises just over
half of the riparian vegetation and consists of
 cottonwood, slippery elm, green ash and box
 elder. Sandbar willow, peachleaf willow and
 cottonwood occur along river sandbars. The
 acreage of riparian forest in this reach has
 been drastically reduced since settlement and
 by construction of Garrison Dam (U.S. Army
 Corps of Engineers, 1994).

    Johnson, et al. (1976) detected numerous
 changes after the construction of Garrison and
 Oahe Dams. These included a decline in the
 growth  of  most tree species, low seedling
 recruitment of cottonwood and willow and low
 survivorship of box elder and american elm
 seedlings.    Cottonwood  and willow are
 predicted  to  decline in the future to be
 dominated  by  american elm,  box elder and
 green ash  (Johnson, 1992), with green ash
 eventually  totally  dominating the  system,
 growing in dense stands,  with a  resulting
 decline  in habitat diversity.  Fauna! diversity
 may then also decrease.

   The reach of the Missouri River from Fort
 Randall Dam to Lewis  and Clark Lake is a
 national recreation river.  Nearly all of the
 riparian  vegetation is forest,  dominated by
 cottonwood mixed  with green ash, russian
 olive, slippery elm and box elder. The Missouri
 River from Gavins Point Dam to Ponca is also
 a  national  recreation river  and is  the only
 segment downstream of Gavins Point  Dam
 that has not been channelized. It has a wide
 braided  channel with numerous islands and
 backwaters.   However, as  mentioned  in
 Chapter 2,  this is the area where significant
 erosion is occurring for the river to regain its
 lost sediment load. Riparian vegetation in this
 reach has been severely reduced by clearing
 for agriculture.  Over one-half of the remaining
 area is forested, dominated by cottonwood,
with lower densities of green ash, slippery elm,
 red cedar, russian olive, mulberry  and box
elder.

   According to the Fish and Wildlife Service
134

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                                                 Northern Great Plains Aquatic Assessment
 (1994) habitat of the Upper Missouri River has
 been affected by  the suppression of high
 flows.  This loss of high flows has cut off
 access to seasonally  flooded backwaters
 which provide spawning, nursery and feeding
 areas for fish and feeding and breeding areas
 for migratory  birds.   This  same loss of
 connection to off-channel areas has reduced
 nutrient inputs to the upper river and resulting
 in a loss of productivity (U.S. Fish and Wildlife
 Service, 1994).

   Seventeen species of ducks, three species
 of geese and one swan species occur along
 the Missouri River and it supports sixty-one
 species of shorebirds, wading  birds and
 waterbirds (U.S. Army Corps  of Engineers,
 1994). All are dependent on Missouri River
 hydrology  for supplying sandbars, shorelines
 and shallow water zones. The River provides
 breeding habitat for endangered interior least
 tern, bald eagle, and threatened piping plover.
 It provides migration and wintering habitat for
 endangered peregrine falcon and whooping
 crane  and potentially provides habitat for
 endangered  eskimo curlew,  gray bat and
 Indiana bat (U.S. Army Corps of Engineers,
 1994).

 North Platte River, Wyoming

   Miller, et al. (1995) looked  at changes in
the Rawhide Wildlife Management Area along
the  North Platte  River  in  southeastern
Wyoming  that had occurred between 1937
and 1990 after shifts in flooding and intensity
of flooding of the river.  They found that the
river declined in wetted area by 75% during
that time frame. They also found that the areal
proportion  occupied by  older  cottonwoods
increased, while that of younger cottonwoods
decreased,   although   some   traditional
measures  appeared  insensitive to  these
changes. The proportion of the landscape that
changed land types declined with increasing
distance from the river. Further modification of
the landscape structure and continued decline
in cottonwood recruitment and increases in
cottonwood  mortality  are expected.   The
reasons for these changes are alterations in
the flow regimes toward reduced peak annual
flows (a result of dams) and enhanced low
flows (irrigation return flow and transmountain
diversions).

   Friedman,  et al.  (1997)  state  that a
decrease in the peak flows in the Platte River
temporarily increases cottonwood regeneration
because  of channel  narrowing,  however,
cottonwoods  decline  over  the  long-term
because  of decreases   in the  necessary
physical disturbances.

Marais River/Tiber Reservoir, Montana

   Rood and  Mahoney  (1995) found that
there is a deficiency of cottonwood seedlings
downstream from the Tiber Dam that probably
results from stabilized river flows (the dam
traps spring flood flows and augments flows at
other times).   The reasons for the  loss  of
cottonwoods were competition  with grasses
and  shrubs encroaching  due  to lack  of
flooding, poor seedling establishment due to a
lack  of spring flooding, reduced formation of
sandbars for seedling recruitment site due to
reduction of erosion and  deposition process,
loss  of sediment for bar  expansion because
silt now settles out in the reservoir,  and an
entrenched channel, which may have resulted
from the combination of a lack of flooding and
loss  of sediment.  They predict that there will
be  a progressive decline  of the  riparian
cottonwood forests downstream from the dam
unless a  more dynamic  river flow pattern is
reestablished.

Future Trends

   Pressures on riparian areas in the Northern
Great Plains  can be expected to continue.
People are attracted to riparian areas much as
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 Chapters - Wetlands and Riparian Habitats and Land Cover
 wildlife are.  Development and recreation will
 continue to threaten riparian areas, especially
 in  areas  with  increases  in  population.
 Changes in the operations of the dams may
 occur  in the  future, but  without  changes
 resulting in a more natural hydrograph, the
 riparian systems will continue to decline, as will
 the populations of the species dependent on
 them.   Pressures from irrigated agriculture
 (diversions) will likely continue in certain areas
 of the western Northern Great Plains.

 3.4  LAND   COVER  AND  AQUATIC
 SYSTEMS

 introduction

    Land use directly impacts the condition of
 aquatic  systems.   Areas  with considerable
 acreage of row crops can have increased
 loadings of silt, nutrient and in some  cases,
 pesticide to streams and lakes.  Urbanized
 areas can contribute runoff from streets and
 siltation from road and building construction.
 In this section, the land cover of watersheds
 within the  NGPAA are compared for the
 amounts of  cropland versus  grassland or
 forest that they contain. Cropland and pasture
 coverages are separated from each other and
 categorized as areas of intensive human  use.
 These areas are  where humans have most
 radically changed the landscape from the
 original  condition and these are areas where
 one would expect aquatic systems  to be
 impacted.  This is  not to  say that aquatic
 systems in areas that are not cropland are not
 under stress and that these areas are pristine;
 they certainly are not.  However, impacts are
 generally greater from changing the land cover
 as opposed to stressing the cover that is some
 semblance of the original.

 Key Findings

•Intensive human influence is greatest in the
 eastern  and northeastern  portions of the
 NGPAA, reflecting the greater concentrations
 of cropland. It is least in west, southwest and
 central portions of the NGPAA.
 •Grassland cover is greatest in central South
 Dakota, northeastern Wyoming, the Sand Hills
 and northern and southeastern Montana.
 •Forest coverage is greatest in  the western
 and southwestern margins of the NGPAA, as
 well as the Black Hills.

 Data Sources

    Land  coverages   were  provided  by
 Information in this section was  provided by
 CALMIT at the University of Nebraska-Lincoln
 from AVHRR data at a resolution of about 1
 square kilometer. The data was provided as
 numerous coverages, including, sagebrush,
 grassland (wheatgrass, grama, etc.), cropland
 (wheat, com, etc.), dry cropland, ponderosa
 pine forest and others. These were further
 grouped into 10 categories by EPA Region VIII
 and the  cropland coverages were  grouped
 together for the intensive human influence
 analysis.

 Spatial Patterns

    Both natural and human-caused changes
 to the landscape can affect water quality and
 aquatic systems. Natural events such as fires
 or  storms  can  add  materials  to  aquatic
 systems, and the  type  and  amounts  of
 materials added depend on the nature of the
 land cover.  Changes humans  make to the
 landscape can be dramatic as well. Utilization
 of grasslands by grazing can  change the
 runoff regimes and add materials to streams.
 However, the most dramatic changes involve
 large-scale  replacement _ of   the  native
 ecosystems  with  agricultural  systems,
 especially row crops. This section examines
the  extent of some of these coverages to
 highlight  areas   where  intensive  human
influence on the landscape has occurred. This
136

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                                                  Northern Great Plains Aquatic Assessment
will give an idea of where in the NGPAA the
aquatic systems may be most impacted as a
result of human activities.  This assessment
does not mean to  imply that areas not
highlighted are unimpacted. All of the NGPAA
has been affected by human use at one time
or another, this  section looks at the relative
amounts of human influence throughout the
Northern Great Plains.

    Intensive   human  influence   on  the
landscape is presented in Figure 3.4.1. Areas
of cropland, dry cropland and cropland/pasture
mixtures were  added together to  get  a
percentage of  human  influence  in  each
watershed.  Eastern  North  Dakota, eastern
South  Dakota,  northeastern Nebraska and
northeastern Montana are areas with greater
than 90% cropland in each watershed. Areas
of extensive cropland also exist throughout
much of North Dakota, central Nebraska and
western South  Dakota.   The North-central
Great Plains, Western Glaciated Plains, Red
River Valley, Northeastern Glaciated  Plains
and Northern  Glaciated  Plains   are the
ecosections with the greatest intensive human
influence  in  the  NGPAA.    In  contrast,
northeastern Wyoming, central South Dakota,
the Sand Hills and northern and southeastern
Montana  show  less cropland  and  less
intensive human use. These areas  match
closely  the  non-cropped  grassland  areas
depicted in Figure 3.4.2. Figure 3.4.3 presents
the watersheds with the  greatest amount of
coniferous forest areas, with the western and
southwestern margins of the NGPAA, as well
as  the Black  Hills containing the  greatest
amounts.
                                                                                  137

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                                                                                      Percent Human
                                                                                        Influence
                                                                                           0- 10
                                                                                           10-40
                                                                                           40-60
                                                                                           60-90
                                                                                           90-100
Figure 3.4.1 Intensive Human Influence in the NGPAA: Percentage of Cropland and Pastureland Coverages by Watershed

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                                                                                         Grassland
                                                                                         Percentage
                                                                                              0- JO
                                                                                              W-4O
                                                                                              40-60
                                                                                              60-90
                                                                                              90-100
Figure 3.4.2 Percentage of Grassland Coverages by Watershed

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                                                                                         Coniferous Forest
                                                                                           Percentage
                                                                                              0-10
                                                                                              10-25
                                                                                              25-50
                                                                                              >50
Figure 3.4.3 Percentage of Coniferous Forest Coverages by Watershed

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 Water Laws  and  Restoration  Programs
 4.1 INTRODUCTION

 Question 3  What laws,  policies  and
 programs for the protection of water
 quality, streams, wetlands and riparian
 area are in place, and how do they affect
 aquatic resources, other resources and
 human uses within the Northern Great
 Plains Assessment Area?

   This chapter describes the various laws,
 regulations and restoration programs in place
 to protect water quality and aquatic species.
 Section 4.2 focusses on laws. Highlighted are
 the Clean Water Act, the Safe Drinking Water
 Act  and  the  Endangered Species  Act
 However, a number of federal and state laws
 are discussed.  Section 4^3 introduces the
 numerous aquatic restoration programs such
 as grants and incentives provided that affect
 aquatic resources.
                                    t
 4.2 LAWS AND REGULATIONS

 Introduction

   This  section summarizes the components
 of the Clean Water Act, the Safe Drinking
 Water Act and the  Endangered Species Act
 These are the three major pieces of federal
 legislation   available  to  protect  aquatic
 resources.

 Clean Water Act

   The  Federal Water Pollution Control Act
 (commonly referred to as the Clean Water Act)
was originally passed in 1948.  That version
and subsequent versions until 1965 basically
only  provided  funds  for  building  sewage
treatment  plants and  supporting  efforts for
interstate cooperation.  The 1965 Act directed
states  to  set  water  quality  standards
establishing water quality goals for interstate
waters. The greatest change, however, came
with the reauthorization in  1972.  This Act
made discharging of effluent to waters of the
United States a privilege, not a right, and a
permit was required to do so.  It also made it
illegal to dredge or fill waters of the United
States without a permit.  Prior to this, states
set water quality standards and dischargers
were expected to meet them,  but a direct
responsibility of the dischargerforthe pollution
had to be proven. This was often very difficult
The 1972 Act set goals of  restoring  and
maintaining  the   biological,  physical  and
chemical integrity of the nation's waters and
no discharge of pollutants.

   The Clean Water Act was reauthorized in
1977 and  1987.   The 1987 reauthorization
added Section 319, a program  to deal  with
nonpoint  source  pollution.   The following
sections describe  the programs under the
Clean Water Act that deal with water quality
standards, point source  pollution, nonpoint
source pollution and wetlands loss.

Water Quality Standards

   Water quality standards consist of three
elements.    The  first,   designated uses,
describes existing  and/or potential uses of a
waterbody.    Uses   include  recreation,
agriculture, drinking water supply and aquatic
life protection.  The second element, water
quality criteria, are expressed  as numeric
pollutant  concentrations   or  narrative
requirements, that are designed to protect the
designated  uses.   The  third element, an
antidegradation policy, maintains and protects
the existing water quality (where water quality
is better than minimally required by the water
quality criteria) and existing uses, whether or
not such uses have been designated.

    States and  tribes   set  water  quality
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 Chapter 4 - Water Laws and Restoration Programs
 standards and  are  required to review their
 standards even/ three years and revise them
 if necessary.   States and tribes  adopt the
 standards, which are submitted to the U.S.
 Environmental Protection Agency (EPA) for
 approval.  If the EPA disapproves a standard,
 the changes necessary are communicated to
 the state or tribe. If the state or tribe fails to
 make the required  changes, the EPA can
 promulgate a federal standard to replace it.

    There are several important uses for water
 quality standards in the protection  of the
 nation's waters.  These include calculating
 permit limits for  point source  dischargers,
 calculating  total   maximum   daily  . loads
 (TMDLs), issuing water quality certifications for
 actions affecting water quality and require a
 federal license  or permit, preparing various
 reports that document current water quality
 conditions and  developing,  revising  and
 implementing  nonpoint source management
 plans.

 Point Source Control

    Under Section 402 of the Clean Water Act,
 the National  Pollutant Discharge Elimination
 System (NPDES) established an approach in
 which  dischargers to waters  of the  United
 States must at a minimum meet established
 technology-based effluent limitations.  These
 limitations  are  developed   for   different
 categories of dischargers (mines, oil refineries,
 domestic wastewater treatment  plants, etc.)
 and are based  on best available technology.
 For example, all sewage treatment plants need
 to meet a certain limit for BOD, whereas mines
 have to meet certain limits for different metals.
 These limits were very successful in reducing
 much  of  the   pollution  to  U.S. .waters. '
 However,  a drawback was that technology-
 based  limits did  not take into account the
waterbody  receiving  the  discharge.   These
limits  did  not  necessarily match what was
necessary to protect aquatic  life or drinking
 water uses. Also, technology-based limits do
 not exist for all  potential pollutants.  In the
 1980s,  the water  quality-based permitting
 approach was  overlaid onto the technology.
 based method, such that dischargers now
 must meet technology-based limits for their
 category and water quality based limits derived
 from  the  water  quality  standards for the
 waterbody, whichever is more stringent for a
 given pollutant. Water quality-based limits are
 derived from the  water quality criteria for the
 waterbody to  which the  point source is
 discharging. There are additional complicating
 factors in converting the water quality criteria
 to permit limits, which include determining the
 dilution flow in the stream, mixing zones that
 may be used or any temporary modifications to
 the criteria.

    NPDES permits are typically issued for five
 years in duration and in addition to the actual
 limits for individual pollutants, permits include
 monitoring and reporting  requirements and
 may  include  compliance  schedules  (for
 construction  of treatment facilities, etc.) to
 meet  the limits in the permit.   Compliance
 schedules  only apply to water quality-based
 limits; they no longer apply to the technology-
 based limits  because  the time frames for
 compliance, with  these limits have passed.
 Individual states or tribes may apply for and
 receive the authority to administer the NPDES
 program, thereby issuing the permits directly,
 instead of  EPA.  Most states  in the United
 States now are authorized to administer the
 NPDES program. There are some individual
 components of the NPDES program that are
 not delegated to all the states in the Northern
 Great Plains Assessment Area, which will be
 discussed, but all have the basic authority to
 issue permits for direct dischargers to surface
waters. A discharger must apply to the state
 (or EPA if  non-delegated) for a  permit, and
 cannot discharge until one is received. To
 discharge without a permit is a violation of the
Act.
142

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            U.S. EPA Main Library
            Mail Code C267-01
            109 TW. Alexander Drive
            Research Wangle Park, NC 27711
    The  NPDES  program contains several
 important programs within it in addition to the
 individual discharger  controls.   These  are
 pretreatment,   biosolids and storm water
 programs. The pretreatment program controls
 discharges from industrial facilities into  the
 wastewater treatment system of municipalities
 through individual permits issued by the cities
 to the industries.  The pretreatment program
 is run by EPA for all the states in the Northern
 Great  Plains,  except  South  Dakota  and
 Nebraska.  The biosolids program regulates
 the disposal  or land application  of sewage
 sludge from municipal wastewater treatment
 plants.  Presently, none of the states in  the
 Northern Great Plains have  delegation  to
 administer this  program.  The storm water
 program controls discharges to surface waters
 from industrial facilities, construction sites and
 larger cities as a result of storm water runoff.
 Certain  industrial facilities and construction
 sites  are permitted  under large general
 permits, but each state is responsible for the
 program since it is considered part of the basic
 NPDES  permitting program.  The general
 permits contain requirements for developing a
 storm water  pollution  prevention  plan  and
 certain best management practices must be
 employed,  depending  on  the   industry.
 Currently, only cities with populations greater
 than 100,000 need individual  permits.  At
 present,  there are no  cities in the Northern
 Great Plains that are required to have a permit
 under the storm water program.   However,
 phase II of the stormwater program will have
 lower population thresholds and will most likely
 include some cities in the NGPAA.

   Important point sources within the NGPAA
 are municipal wastewater plants, oil wells and
 refineries, coal mines and feedlots with more
than 1000 animal  units.  An  animal  unit is
equivalent to one beef cow and other animals
are set equal to this. For example, a confined
animal feeding operation consisting of hogs
would need 2500 animals to be regulated as a
     Northern Great Plains Aquatic Assessment

point source. Operations with less than 1000
beef  cattle or less than  2500  hogs  are
considered to be nonpoint sources under the
Clean Water Act unless they are designated
as a point  source due  to a significant water
quality impairment  Feedlots of eligible size
are required to contain runoff from  the site up
to certain sized storms.

   A distinction should be made for irrigation
return flows as well.  Although many irrigation
returns  may  emanate from what would
normally be considered distinct point sources,
they are exempt from the definition of a point
source by Section 502(14) of the Clean Water
Act.  Therefore,  irrigation  returns are  not
required to have NPDES  permits and  are
considered nonpoint sources.

   Additionally, some states have permitting
programs with respect to discharges to ground
water. For example, the South Dakota ground
water discharge  permit program requires
permits when discharges are above  ground
water quality  standards and the program
includes   three   permits:   a  permit  for
construction, a water quality variance (which
limits the area and quality of discharge) and
the  discharge   permit   (South  Dakota
Department of  Environment  and  Natural
Resources, 1996).

Nonpoint Sources

   The 1987 amendments to the Clean Water
Act added Section 319, a program designed to
address nonpoint source pollution. Nonpoint
source pollution is that which does not enter
surface waters through a discrete point source
or has been exempted from classification as a
point  source  (i.e.,  irrigation return flows).
Nonpoint source pollution can originate from a
broad area and can  be from sources that are
intermittent (e.g. runoff from  precipitation
events). Nonpoint source pollution originates
from  atmospheric  deposition,  runoff  from
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 Chapter 4 - Water Laws and Restoration Programs
 agricultural lands (crops, range), runoff from
 land-disturbing activities, runoff from feedlots
 with less than  1000 animal  units,  poorly
 maintained on-site wastewater systems (septic
 tanks),  runoff from  road  construction and
 maintenance,  hydrologic  modification  and
 removal  of riparian vegetation, as well as
 many  other  sources.    Nonpoint source
 pollution is much  more difficult to control
 because it  is  generally  less  visible  and
 methods that would be employed  to control
 point  sources might not be  effective (i.e.,
 permits).

    Nonpoint source pollution is a major threat
 to the nation's waters.  The 1994  Report to
 Congress (305(b) Report) summarizing all the
 states' assessment efforts  for that two-year
 cycle stated that 36% of streams and 37% of
 lakes  had impaired water quality.  Of the
 impaired streams, 60% of the impairment was
 due to agriculture, the leading (but not only)
 source of nonpoint source  pollution  (U.S.
 Environmental  Protection  Agency,  1995).
 Agriculture was responsible for 50%  of the
 impairment of  lakes in the country. Fully 22%
 of all  assessed  streams in the nation are
 impaired due to agriculture.

    Section 319 required the states to identify
 nonpoint source problems,  develop nonpoint
 source assessment reports, adopt nonpoint
 source management  programs to control
 nonpoint sources  and   implement  the
 management  programs over multiple  years
 (Council  for   Agricultural  Science  and
 Technology, 1992).  The EPA is authorized
 under Section  319 to provide grants to  states
 and tribes to assist them in implementing their
 programs.   The programs are subject  to
 approval by EPA _and all  states,  including
those in the Northern Great Plains, have EPA-
approved programs. Approximately half of the
funding provided to the states by EPA each
year is  available for statewide program activity
(staffing, outreach, etc.) and the other half is
 for specific nonpoint source projects (Council
 for  Agricultural  Science  and  Technology,
 1992).  The nonpoint source projects to be
 funded within a state  are chosen by state
 nonpoint  source  task forces,  which  are
 generally  made  up of  representatives from
 public agencies and private groups.

    Tribes with  approved nonpoint  source
 management programs are also eligible for
 funding under Section 319.  The nonpoint
 source management plans should include, in
 part, an emphasis on a watershed approach,
 measures   designed   to  remedy  present
 problems  and prevent  future  problems, and
 state identification of Federal lands which are
 not managed consistently with state nonpoint
 source objectives.   Implementation of plans
 should include a mix of regulatory programs,
 non-regulatory programs and financial and
 technical assistance. Improvements in water
 quality affected  by nonpoint sources  are
 acheived through the implementation of best
 management practices (BMPs). These can be
 structural and/or nonstructural techniques to
 prevent or  reduce the  nonpoint  source
 pollution.  Examples, among  many,  include
 fencing or proper grazing sytems, sediment
 basins, irrigation water management (sprinkler
 systems, canal lining), grass buffer strips and
 installation  of culverts  to  prevent  erosion
 (Colorado  Water Quality Control Division,
 1990; State  of Utah. 1995).

 Wetlands Protection

   Section  404 of the Clean  Water Act
 prohibits  the discharge  of dredged or fill
 material into waters of the United States (e.g.,
 rivers, lakes, streams,  wetlands) without a
 permit from the U.S. Army Corps of Engineers.
The  removal of  material fs also  regulated.
 Dredged or  fill material includes soil, sand,
gravel or other material.  Wetlands are defined
by   the  Corps   of Engineers  and   the
Environmental Protection Agency as "those
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                                                 Northern Great Plains Aquatic Assessment
areas  that are inundated  or  saturated by
surface or groundwater at a frequency and
duration sufficient to support and that under
normal circumstances do support a prevalence
of vegetation  typically  adapted for  life  in
saturated soils."

   Common  types of  activities  that  are
regulated  include channel construction  and
maintenance, transportation improvements,
construction of water resource projects (dams,
levees,  etc.) and fills to  create development
sites.   Some activities that may destroy
wetlands such as drainage and groundwater
pumping may not be regulated because they
often do not involve discharging dredged or fill
material.  Certain activities are exempt from
needing a permit.   These  include (among
others)  normal farming or ranching  of a
wetland area  (does not involve  filling  it);
maintenance of damaged structures such as
bridge   abutments,  darns,   levees,   etc.;
construction or maintenance of farm or stock
ponds or irrigation ditches; and maintenance
(but not construction) of drainage ditches.'

   Discharges of dredged or fill material can
be authorized by either an individual or general
permit issued by the Corps of Engineers or an
authorized state or tribe.  No states ortirbes in
the  Northern  Great Plains are  presently
authorized. Individual permits would apply to
a specific  action.   General  permits can be
issued on state, regional or nationwide basis.
General permits must cover actions that are
similar   in  nature  and  will  cause minimal
adverse environmental effects individually or
cumulatively.   A  permit for an  action to
discharge  dredged  or fill material must be
denied if the action does not comply with the
Section  404(b)(1) guidelines. The guidelines .'
under this Section were developed by both the
EPA and the Corps of Engineers and contain
criteria  used to evaluate the impacts of a
proposed  action.    The guidelines include
requirements  that   no   discharge  can  be
permitted if there is a practicable alternative
with less adverse  impact on  the aquatic
environment  and no  discharge  can  be
permitted if it would violate other laws such as
state  water  quality   standards   or  the
Endangered Species Act.  In addition,  under
Section 401  of the Clean Water Act, states
(and in some circumstances, EPA) can certify
that the action will comply with water quality
standards. The EPA does have the authority
under Section 404(c) to 'Veto" a permit if the
EPA finds that  it will  have unacceptable
adverse effects.

    Enforcement of the 404 program is carried
out by  both  the EPA  and  the  Corps  of
Engineers.     The Corps has the lead on
enforcement  of  violations  of  Corps-issued
permits  and  also  a significant amount of
enforcement against unauthorized discharges.
The EPA focuses its enforcement efforts on
unpermitted  discharges  of dredged  or fill
material.

    States have an important role in the 404
program under Section  401  of the  Clean
Water Act. The Corps  cannot issue a 404
permit if the state denies certification that the
action will not violate the state's water quality
standards. This certification is necessary for
many other federal permits as well (including
EPA-issued NPDES permits).

Other Important Clean Water Act Provisions

    Section 305(b) of the CWA requires states
to submit a report to Congress every two years
detailing the condition of the waters within that
state,   whether  they   are  meeting  the
designated uses  and what the causes  and
sources of the impairment are.  Causes of
impairment mean the individual parameters or
actions such  as nutrients, metals, thermal
modifications or habitat alterations.  Sources
of  impairment  include  things   such  as
rangeland, municipal point sources or resource
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 Chapter 4 - Water Laws and Restoration Programs
                                       i,
 extraction.

    Section 303(d) requires that every two
• years that states send the EPA a list of every
 impaired waterbody. Impaired waterbodies are
 those  that do  not meet designated uses.
 Additionally,  states   must  list  impaired
 waterbodies for which a total maximum daily
 load (TMDL) will be performed. TMDLs are the
 total load of a particular pollutant that a stream
 or lake can assimilate from all sources and not
 exceed water quality standards.  The TMDL
 process  analyzes what the loading  of a
 particular pollutant is from point and nonpoint
 sources and partitions what is allowed to be
 contributed from both. This has a direct effect
 on the NPDES permits for the stream or lake
 where a TMDL has been done, in that it may
 set the limits for that pollutant lowerthan might
 otherwise be  calculated through a straight
 dilution calculation. This may happen because
 other sources (both point and nonpoint) are
 also contributing and using up  part of the
 capacity  of the  waterbody to  assimilate
 pollutants.  In  addition, for many TMDLs
 involving  nonpoint  sources,  stream  and
 riparian condition information are needed.

 Safe Drinking  Water Act

    The Safe Drinking Water Act (SDWA) was
 first passed in 1974,  and most  recently
 reauthorized in  1996.  It regulates the quality
 and protects supplies of drinking water, both
 surface and ground water. It requires the EPA
 to set  Maximum Contaminant Level Goals
 (MCLGs) forpublicwatersystems (notstreams
 or lakes) and either Maximum Contaminant
 Levels or specific treatment techniques for the
specific  contaminants.     MCLGs  are
nonenforceable goals set at the level where no '„.
known or anticipated adverse effects on the
health of persons occur. MCLs are to be set
as  close to  the MCLG  as  is  feasible
considering the best technology available with
an allowance to consider costs.  Treatment
 techniques are set only if it is not feasible to
 determine  the level  of  a  contaminant in
 drinking water.

    SDWA also requires  the preparation of
 Wellhead Protection Programs by each state
 to  protect public water  supply wells from
 contamination (Council for Agricultural Science
 and Technology,  1992).    The  Wellhead
 Protection   Programs  must  include  the
 following components: delineation of Wellhead
 Protection  areas,  source identification,
 description  of  management approaches,
 contingency plans and site controls for new
 wells (Council for Agricultural Science and
 Technology, 1992). South Dakota's wellhead
 protection program was approved by the EPA
 in 1992,  although most efforts to date have
 been in the Big Sioux Aquifer area which is
 outside  of  the  NGPAA   (South  Dakota
 Department  of  Environment and  Natural
 Resources, 1996). Montana's program was
 submitted in 1993. North Dakota's program
 was approved by EPA in 1992 and as of 1994
 there  were  72  public  water   systems
 participating  in   the  wellhead   protection
 program, which is 25% of systems in the state
 and 40% of the population served by systems
 using groundwater (North Dakota Department
 of Health, 1994).

    The   Underground   Injection  Control
 Program (U 1C) is another important component
 of the  Safe Drinking  Water Act.   The Act
 requires states to develop a UIC program to
 prevent contamination of underground drinking
water supplies by injection wells (Council for
Agricultural Science and Technology,  1992).
There are five categories of wells, which are
listed below (from Pettyjohn, et al. 1991):

    Class I - used to inject hazardous and non-
    hazardous waste beneath the lowermost
    formation  containing  an underground
    source of drinking water.
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                                                'Northern Great Plains Aquatic Assessment
    Class II - used to inject brine from oil and
    gas production.

    Class III - used in conjunction with solution
    mining of minerals.

    Class IV - used to inject hazardous or
    radioactive wastes into  or above  an
    underground  source of  drinking  water
    (banned nationally).

    Class V - none of the above but which
    typically inject non-hazardous waste into or
    above an underground source of drinking
    water (also known  as  shallow injection
    wells).

    Class V wells include agricultural drainage
wells receiving such inflows as field drainage,
irrigation  return   flow  and  feedlot  waste
(Council  for  Agricultural   Science  and
Technology, 1992).  Class V wells can be
authorized to operate if their existence was
reported to the states or the EPA with  the
specified time and they do  not cause  the
violation of an MCL in an underground drinking
water source. Septic systems fall under this
authority  as well,  however, those that serve
single-family residences and those that  are
used only for sanitary waste and the capacity
to serve 20 people or less are exempt.
    The South Dakota UIC program presently
regulates the underground injection of oil and
gas wastes and has applied for the authority to
regulate in situ mining and  Class  V wells
(South Dakota Department of Environment
and Natural Resources, 1996). South Dakota
does  presently have minimum construction
requirements for septic systems (South Dakota
Department of Environment and   Natural
Resources, 1996). Jhe North Dakotaprogram
has permitted three Class I wells and with 75%
of the state surveyed, there were 613 Class V
wells in 1994, which are permitted by rule in
North Dakota (North Dakota Department of
Health, 1994).
   The Underground Storage Tank (UST) and
Leaking Underground Storage Tank (LUST)
programs protect ground and surface water by
remediating  leaking underground  storage
tanks and  establishing  standards  for new
tanks.  South Dakota was granted the UST
program in 1995 and regulations include tank
notification,   performance  standards,
requirements for new UST systems,  financial
responsibility, upgrading of existing systems,
release detection,  reporting of  spills  and
closure   (South   Dakota  Department  of
Environment and Natural  Resources, 1996).
South Dakota also has Leaking Underground
Storage Tank trust fund for identifying parties
responsible for contamination and for cleanup
when these parties  cannot be found and a
Petroleum Release  Compensation  Fund to
help smaller tank owners with the  costs of
cleanup  (South  Dakota  Department  of
Environment and Natural  Resources, 1996).
Wyoming has applied for primacy  of the UST
program  and has  similar requirements as
South  Dakota including  a tax  on  mineral
royalties to help pay for cleanups (Wyoming
Department of Environmental Quality, 1996).

Endangered Species Act

   The earliest version  of the Endangered
Species Act was passed in 1966. It allowed
listing of species as endangered and directed
the Departments of Interior, Agriculture and
Defense to seek to protect listed species and
attempt to preserve  their habitats.   The
reauthorization of 1969 added the ability to list
foreign species and  prohibit their importation.
However, it was the  Endangered Species Act
of  1973  that  significantly changed  how
endangered species would be protected in the
United States.   The  1973 Act stated its
purposes as providing "a means whereby the
ecosystems upon which endangered species
depend may be conserved..." and "...to provide
a  program  for  the conservation  of such
species...".
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 Chapter 4 - Water Laws and Restoration Programs
                                        \\
    The Act (and its subsequent amendments
 in 1978,1982 and 1988) defined categories of
 endangered and threatened. It included plants
 and invertebrates, along with vertebrates as
 being eligible for protection. It defines species
 as any species, subspecies, or variety of plant
 or species, subspecies or population of animal.
 It allowed for the designation of experimental
 populations of a species that could be subject
 to lesser restrictions.

    The  criteria for listing a species includes
 present  or threatened destruction of habitat;
 overutilization  by  commercial,  recreational,
 scientific or educational purposes; disease or
 predation; or inadequacy of existing regulatory
 mechanisms or other natural or man-made
 factors affecting its continued existence. The
 Act under Section 9 prohibits the taking of an
 endangered animal species by anyone  and
 recent  court  cases  have  reaffirmed  that
 destruction of habitat is a take, not just direct
 harm to the species. Section 4 requires critical
 habitat to be designated concurrently (when
 prudent) with the listing of a species and
 economic  factors   are   required  to  be
 considered when designating critical habitat.
 Economics is not to be taken into account
 when listing.  Anyone can petition the U.S.
 Fish and Wildlife Service (FWS) to add or
 remove a species from the list The FWS has
 90 days to decide whether more information is
 needed, whether the listing may be warranted
 and 1  year to make its finding.  Previously,
 there were  three  categories of candidate
 species for listing.  This has been reduced to
 one, which is a list of those where substantial
 information exists  to support listing.  The
 former category 2 species are no longer listed
 (those for whom information existed  indicating
 listing  may  be  appropriate,  but  further ,
 information was needed).

   Section 7 of the Act requires all federal
agencies  to  undertake  programs for the
conservation of endangered and threatened
 species and prohibits them from authorizing,
 funding or carrying out any action that would
 jeopardize a listed species or modify its critical
 habitat.  An amendment in 1978, however,
 allowed a cabinet-level committee to convene
 and  elect  to  allow  a federal agency to
 undertake an action that would jeopardize a
 species. If an action by a federal agency may
 affect a listed species, it is required to consult
 with the U(.S. Fish and Wildlife Service. The
 federal agency provides information to the
 FWS on  whether it believes the action will
 jeopardize the species or adversely modify its
 habitat   The  FWS issues an opinion on
 whether the action will jeopardize the species.
 In determining jeopardy, the FWS first looks at
 the present status of the species, and then
 adds to  this   baseline the effects  of the
 proposed federal action, along with cumulative
 effects such as  state  and private  actions
 reasonably  certain to  occur.   The FWS
 identifies reasonable and prudent alternatives
 that can be implemented which would avoid
 jeopardy.  An incidental take permit is issued
 with the Biological Opinion to allow some
 taking of individuals  or habitat along with
 reasonable and prudent measures necessary
 to reduce the amount of incidental take.

    Section 4 contains the  requirements for
 recovery plans. A recovery plan outlines the
 major recovery actions that will be needed for
 the species.

    Several  states within the NGPAA have
 state endangered species laws.  Nebraska has
 probably the most comprehensive in that il
 covers  both animals  and  plants, recovery
 plans  and  state  agency  consultation  is
 required  and critical habitat designation is
 authorized (Center for Wildlife Law, 1996).
Montana's  act covers  only  animals,  but
 recovery plans are required;  state agency
consultation and critical habitat designation is
 not required. South Dakota's act covers both
plants and animals, but has no requirement foi
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                                                Northern Great Plains Aquatic Assessment
 recovery plans, consultation, or critical habitat
 North Dakota and Wyoming do not have state
 endangered  species  acts,  although
 management  programs  for  endangered
 species  are  authorized  under  separate
 statutes in North Dakota (Center for Wildlife
 Law, 1996).

 Other Laws

   Table 4.2.1 lists other federal and state
 laws that have some impact on  protection of
 water  quality  and  aquatic   habitat  and
 describes the section(s) that relate to that
 issue.

   There are otherwetiand protection statutes
 besides the  Clean Water Act that are worth
 mentioning such  as the Emergency Wetland
 Acquisition Act, the Farm Bills of 1985, 1990
 and 1996 and Title IV of the Tax Reform Act of
 1986  (Leitch and  Baltezore, 1992).   The
 Emergency Wetland Acquisition  Act requires
 states to include wetland priority  plans in their
 state comprehensive outdoor recreation plans.
 The Food Security Act of 1985 (and changes
 in  1990  and  1996),  referred  to  as
 Swampbuster,     discourages   wetland
 conversion   for  agricultural  purposes  by
 denying farm  program  benefits, such as
 deficiency payments, Commodity Credit loans,
 and federal  crop insurance, on all land the
 farmer manages if the operator converts any
wetland on that land. This threat of ineligibility,
when there are low crop prices, makes this act
 effective in limiting wetland damage; it loses its
 effectiveness to  protect wetlands as crop
 prices rise. There are about 7.5  million acres
 of wetlands in  the Northern Great Plains
 subject to the Food Security Act regulations
 (U.S.   Natural   Resources  Conservation
Service, 1996). The Tax Reform Act of 1986
 removed the  ability  to  deduct  drainage
 expenses of wetland drainage  costs not in
compliance  with the swampbuster provision
and the gains on  the sales of  converted
wetlands are treated as income rather than
capital gains, which are taxed at a lower rate.

   The Federal Insecticide, Fungicide  and
Rodenticide Act (FIFRA) is another law which
has some important provisions relating to the
protection of aquatic systems.  Under FIFRA,
the EPA can require labeling to  inform the
pesticide applicator that the pesticide must be
used in a manner that prevents water supply
contamination (Council for Agricultural Science
and Technology, 1992). In addition, the EPA
may restrict, cancel, ortemporarily suspend all
or  some   pesticide   uses  that  pose
unreasonable risks to human health or the
environment through contamination of water
supplies. The EPA can also require states to
develop chemical-specific state management
plans for particular pesticides as a condition
for continued use of that pesticide (Council for
Agricultural Science and Technology, 1992).

4.3    AQUATIC   RESTORATION
PROGRAMS

   This section describes the various federal
funding sources available to restore or protect
aquatic  resources.     All  of  these  are
nonregulatory and are available  through a
number of federal agencies such as the Forest
Service, the Natural Resources Conservation
Service, the Environmental Protection Agency,
the Fish and Wildlife  Service, the National
Park Service and the Corps of Engineers to
name a few.  Much of this information  was
obtained from the following  sources:  U.S.
General  Accounting  Office  (1996),   U.S.
Environmental  Protection Agency  (1997b),
U.S. Environmental Protection Agency (1997c)
and U.S. Department of Agriculture (1996).
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Table 4.2.1  A Summary or omer Statutes mat nave included provisions for the protection or maintenance of water quality, aquatic
habitat or aquatic species.	.	
Name	~	Purpose with respect to water quality and responsible agency	
Water.Resources Planning Act
Rivers and Harbor Act
Wild and Scenic Rivers Act
Executive Order 11190 (Wetlands)
                          ••*"-
Migratory Bird Conservation Act
Fish and Wildlife Coordination Act
Fish and Wildlife Act
National Environmental Policy Act
Resource Conservation and Recovery Act
Federal, Insecticide, Fungicide and
Rodenticide Act
Comprehensive Environmental
Response, Compensation and Liability Act
Clean Air Act
Executive Orders for wetland and
federal floodplain management	
prepares regional or river basin plans to conserve, develop and use water
(Water Resources Council and OMB)
governs dumping of water into, and the excavation of, navigable waterways
(COE)
preserves rivers and their riparian areas of special recreational and aesthetic
value
governs conservation and use of salty and freshwater wetlands (DOI)
governs conservation of migratory waterfowl and fisheries (FWS)
disclosure of environmental effects of federal projects (responsible federal
agency)
hazardous waste control (EPA, states)
pesticides, registration (EPA, states)

superfund cleanups of abandoned waste sites (EPA)
                                                       i
atmospheric deposition - acid precipitation, toxics (EPA, states)
 requires wetland and floodplain values to be considered during planning of
 actions

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Table 4.2.1 (cont.) A Summary of Statutes that have included provisions for the protection or maintenance of water quality, aquatic
habitat or aquatic species.     	.
Name
Purpose with respect to water quality and responsible agency
National Forest Management Act

Surface Mining Control and Reclamation Act

Soil and Water Resources Conservation Act


Toxic Substances Control Act

Federal Land Policy and Management Act

Wilderness Act


National Parks and Recreation Act

Executive Order 1014

Executive Order 11644

Surface Mining and Reclamation Act


Examples of State Statutes:

North Dakota No-Net Loss

SDCL 34A-2 South Dakota General Water
Pollution Control Statute
National Forest System lands planning (USFS)

reclamation of mined areas, mainly coal mine reclamation (OSM)
                                                i
requires the identification and evaluation of alternative methods for
conservation, protection and enhancement of soil and water resources

requires testing of existing chemicals for toxicity (EPA)

planning for BLM lands (POI)

prohibits roads and vehicles in National Wilderness Preservation System
(USFS, DOI)

sets aside national parks (DOI)
                                                t

establishes National Wildlife Refuges (DOI)

controls use of off-road vehicles in public lands

surface mine reclamation for coal mines (DOI)
protects wetlands in watersheds greater than 80 acres,
gives South Dakota the authority to regulate pollution, monitoring and
cleanup of state waters, this includes ground water and above and
underground storage tanks   		

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Chapter 4 - Water Laws and Restoration Programs

Department of Agriculture

Cooperative State Research. Education and
Extension Service

National  Research  Competitive   Grants
Program supports research on key problems
of  national  and  regional  importance  in
biological, environmental, physical and social
sciences relevant to agriculture and food and
the environment, including water resources
assessment and protection. This program was
authorized by Section 2(b) of the Act of August
4, 1965, Public Law No. 89-106.

Sustainable   Agriculture   Research  and
Education  Program,  among  other  goals,
supports investigations and education in the
use of pesticides and fertilizers in agriculture.
Grants   are   to   universities,  agriculture
experiment stations, nonprofit organizations or
federal or state governments.

Farm Service Agency

Environmental  Quality Incentives Program
establishes conservation priority areas to deal
with water, soil, and related natural resource
problems.  It establishes  five to ten year
contracts to provide technical assistance and
pay up to 75% of the costs of conservation
practices, but  is  limited  to  $50,000  per
contract. EQIP was authorized by the 1996
Farm Bill which  provided for $200  million
annual funding.

Conservation   Reserve   Program  was
authorized under the 1985, 1990 and 1996
Farm Bills.  Its purpose is to improve soil and
water quality by  reducing soil erosion and
sedimentation and establish wildlife habitat by ,
providing direct cost-share  payments, annual
rental payments and technical support. Cost-
share payments are limited to up to 50% of the
cost to establish groundcover for erosion-
reduction purposes.  A  total of  up to 36.4
million acres are allowed to be enrolled at any
one time.

Farm  Debt  Cancellation     Conservation
Program was authorized  by 1985 Farm Bill
(Food Security Act). Its purpose is to protect
marginal and sensitive lands under federal
farm  loans   by  buying  easements  for
conservation,   recreation,  and  wildlife
purposes. Program participants are given debt
cancellation on outstanding loan balances in
exchange for conservation measures.  The
1996 Farm  Bill took away easements and
authorized the entering into of contracts for
these measures.

Wildlife  Habitat Incentives Program provides
for  $50  million  to be   cost-shared  with
landowners for developing habitat for upland
wildlife, wetland wildlife, endangered species,
fisheries and other wildlife.

Forest Service

Stewardship   Incentive  Program   was
authorized by the 1990  Farm Bill with the
purpose of encouraging private landowners to
manage their forest land in ways that improve
water quality, including tree planting and the
implementation of BMPs for stream crossings
and streamside management. Assistance is
provided in direct payments, technical support
and education. The federal cost-share cannot
exceed 75% of the total cost.

Natural Resources Conservation Service

Emergency Wetland Reserve Program was
authorized by  the  1990  Farm  Bill  and
Emergency Supplemental Appropriation Ads
of 1993 and 1994.  Its purpose is to protect
and restore wetlands  affected by the 1993
Midwestern  flood  through acquisition  of
easements and  provision of technical and
restoration cost-share  assistance.    The
assistance is provided in  direct payments at
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 fair  market  agricultural  land  values  for
 permanent  easements  and  30-year
 easements, payments for restoration costs of
 100 percent for permanent easements and
 50% for 30-year easements

 River Basin  Surveys  and  Investigations
 provides planning assistance to federal, state
 and local agencies for  the  development of
 coordinated water and related land resources
 programs,  with  priority  given  to  solving
 upstream  flooding  of  rural  communities,
 improving the quality of water emanating from
 agricultural  nonpoint  sources,  wetland
 preservation,   drought   management   for
 agriculture  and  rural  communities,  and
 assisting   state  agencies  in  developing
 strategic water resource  plans.  Assistance is
 provided as studies, monitoring and technical
 support, It was authorized by the Watershed
 Protection and Flood Prevention Act, PL 83-
 566.

 Rural   Abandoned  Mine  Program   was
 authorized by the Surface Mining Control and
 Reclamation Act of 1977, Section 406, PL 95-
 87.  Its purpose is to protect people and the
 environment from the adverse effects of past
 coal mining practices and to  promote the
 development of soil and water resources of
 unreclaimed  mined  lands.  Assistance  is
 provided in direct payments of up to 100% in
 cost-share funds for conservation practices
 determined  to be  needed for reclamation,
 conservation, and development of up to 320
 acres per owner of rural abandoned coal mine
 land  and waters affected by coal mining
 activities.

 Soil and  Water Conservation Program was
 authorized by the. Soil  Conservation  and
 Domestic Allotment Act of 1936.  Its purpose is
 to plan and carry out a  national resource
 conservation  program   and  to  provide
•leadership in the conservation and use of the
 nation's soil, water and related  resources.
 Assistance is provided in the form of technical
 soil  and  water   conservation   resource
 assistance to state and local governments and
 advisory  and  counseling  services  to  the
 general  public in  order  to  promote  total
 resource planning and management, improve
 water  quality and  natural resources,  and
 reduce point and nonpoint source pollution.

 Watershed Protection and Flood Prevention
 (Small Watershed Program) provides technical
 and financial assistance to state agencies and
 units  of  local government  in planning and
 carrying out projects to protect, develop and
 utilize the land and  water resources in small
 watersheds.  This  includes total  resource
 management and planning to improve water
 quality and solve problems caused by flooding,
 erosion, and sediment damage, conservation,
 development, utilization and disposal of water.
Assistance is  provided in studies, monitoring,
 loans,  cost-share  grants,  and   technical
 assistance for the installation of land treatment
 measures. The cost-share rates depend on the
type of measure, structural  or nonstructural.
 Up to 100% is provided for construction costs
for structural measures with flood prevention
purposes, up  to 50% for structural measures
with other purposes  and  up to  75%  for
installation cost for  nonstructural measures.
This program was authorized by PL 83-566.

 Wetlands Reserve Program was authorized by
the 1990 Farm Bill.  Its purpose is to protect
and restore wetlands through acquisition  of
easements and provision  of  technical  and
restoration cost-share assistance. Assistance
is provided by direct payments at fair market
values for permanent easements and 30-year
easements, payments for restoration costs of
100% for permanent easements and 50 to 75
percent for 30-year easements. The program
has an enrollment cap of 975,000 acres.
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 Chapter 4 - Water Laws and Restoration Programs
 Rural Utilities Service

 Water and Waste Disposal Systems for Rural
 Communities  was   authorized   by  the
 Consolidated Farm and Rural Development
 Act  It finances new and improved rural water
 and  waste disposal facilities through direct
 loans, loan guarantees and grants to construct
 or improve drinking water, sanitary sewer, solid
 waste and storm drainage facilities.  The loans
 are made for useful life of the facilities, 40
 years or state law limitation, whichever  is
 shorter.  Grants cannot exceed 75% of project
 costs.

 Department of Defense

 Army Corps of Engineers

 Flood Plain Management Services provides
 information and data on floods and actions to
 reduce flood damage  potentials, encourage
 prudent use of the nation's flobdplains  and
 support   comprehensive  flood  plain
 management.  Assistance is provided in the
 form  of studies and technical support.  This
 program was authorized by the Flood Control
 Act of 1960, Section 206.

 Planning Assistance to States was authorized
 by the Water Resource Development Act of
 1974. Its purpose is to cooperate with states
 and tribes in the preparation of plans for the
 development, utilization and conservation of
 water and related land resources within their
 respective boundaries by providing  studies
 and technical support.

 Department of the Interior

 Geological Survey -

 National Water Quality Assessment (NA WQA)
 Program's role is to assess the conditions and
trends in quality of ground and surface water.
The program consists of 59 study units in the
 United States.  These include the Red River,
 Central Nebraska, North Platte River, Belle
 Fourche/Cheyenne  Rivers  and  the
 Yellowstone/Powder Rivers in the Northern
 Great Plains.

 Bureau of Reclamation

 Irrigation  Drainage Program.   This  is an
 initiative begun in 1986 with the purpose of
 developing coordinated remediation plans and
 implement corrective actions where irrigation
 drainage has affected endangered species,
 migratory birds and/or has  caused  water
 quality problems.

 General Investigations Program.  This was
 authorized by the Reclamation Act of 1902, PL
 89-72 and PL  102-575.   Its  purpose is  to
 conduct studies to meet current and future
 water quality,  quantity  and  environmental
 needs through the  management  of  water
 supplies  by structural   and   nonstructural
 means.  Assistance is provided in technical
 assistance to  states and feasibility studies
 which require  50%  cost-sharing  from  a
 nonfederal entity.

 Water Treatment Technology Program works
 with  the .private  sector and  academic
 institutions to  reduce the cost  of  water
 treatment and desalting technology in order to
 improve water supply.  Assistance is provided
 in studies, monitoring and technical support
 It was authorized  by PL 57-161, 96-480 and
 98-502.

 National Park Service

 Rivers,  Trails and Conservation Assistance
 Program authorized by the Wild and Scenic
 Rivers Act, National Trails Act and the Outdoor
 Recreation Act.  Its purpose is to advocate and
assist community-based conservation action,
including river restoration and water quality
enhancement.  Assistance is provided in the
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                                                 Northern Great Plains Aquatic Assessment
 form of short-term planning, including studies
 and technical assistance forthe assessment of
 resources, identification  of land protection
• strategies  and organizational development.
 No federal funding is provided.

 Fish and Wildlife Service

 National  Wetlands  Inventory  (NWI)
 coordinates   the   gathering,  analysis,
 dissemination and evaluation of information
 regarding the location, quantity and ecological
 importance of wetlands (EPA, 1997b).

 Contaminants Identification and Assessment
 was  authorized   by  the  Migratory  Bird
 Conservation Act, the Federal Water Pollution
 Control Act, the Endangered Species Act, and
 the Comprehensive Environmental Response,
 Compensation and Liability Act (Superfund).
 Its purpose is to identify and assess the effects
 of contaminants on Fish and Wildlife Service
 lands, Trust Resources and other biological
 resources on and off Fish and Wildlife Service
 lands  using   short-   and  medium-duration
 studies of contaminant exposure and effect.

 Contaminants Prevention was authorized by
 the  same  laws as the previous one.  Its
 purpose is to prevent the adverse effects of
 contaminants  to  Trust   resources   using
 technical  support.   No  federal funding is
 provided.

 Natural Resource Damage Assessments were
 authorized by same laws as the previous two.
 Their purpose is  to provide funding for  the
 assessment of damage to water quality and
 Trust resources from oil  spills and/or other
 hazardous substance releases, so that  the
 restoration or replacement of these injured
 resources are paid for by responsible parties.
 Assistance is provided in the form of on-the-
 ground restoration  activities paid for with
 damages collected from polluters.
Sport  Fish  Restoration/Pumpout  Station
Grants were authorized by the Clean Vessel
Act of 1992 with the purpose of providing
financial assistance to support state projects
for the construction, renovation, operation,
maintenance of pumpout and/or dump stations
for sewage waste from recreational vessels.
Assistance is provided in the form of grants
and education.

Habitat Conservation Project Planning was
authorized  by  the  Fish   and  Wildlife
Coordination Act, the Federal Water Pollution
Control Act and the Federal Power Act. Its
purpose  is  to  pursue opportunities  and
cooperative efforts with other government
agencies and private partnerships to  protect,
restore and enhance fish and wildlife habitats;
provide technical assistance to the private
sector  to  maximize wildlife conservation  in
wetlands,  associated uplands and  riparian
areas;  and  advocate  conservation  and
enhancement of fish and wildlife resources
and habitats that may be affected by energy
and water resource development. Assistance
provided is technical assistance and advanced
planning/consultation services.

North American Waterfowl Management Plan
was  authorized   by  the  North  American
Wetlands  Conservation  Act of 1989.   Its
purpose   is  to   support   a  strategy  for
cooperative  public/private  wetland  habitat
conservation that will reverse the decline in
waterfowl and other wildlife species in the US,
Canada and Mexico. Assistance is provided in
the form of grants. Public and private partners
must contribute an equal amount to what they
receive.

Cooperative  Endangered.   Species
Conservation Fund-Grants to States provides
assistance to states for the development of
programs   to   conserve  threatened  and
endangered species. States can receive up to
75%  of  the  program  costs.   This was
                                                                                  155

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 Chapter 4 - Water Laws and Restoration Programs
 authorized by the Endangered Species Act.

 Partners for  Wildlife  Habitat  Restoration
 Program provides financial  and technical
 assistance to private landowners to restore
 habitat such as wetlands, riparian areas, and
 native grasslands.  Federal monies make up
 no  more  than 60%.    This  program  was
 authorized by the Fish and Wildlife Act of 1956
 and the Fish and Wildlife Coordination Act.

 North Dakota  Wildlife  Extension Program -
 This  program  is  designed  to  enhance
 waterfowl production on private lands in North
 Dakota  through  contracts  for   wetland
 restoration  and creation projects on land
 adjacent to CRP land.

 Bureau of Indian Affairs

 Fish, Wildlife and Parks Programs on  Indian
 Lands  promotes   the   conservation,
 development and utilization offish, wildlife and
 recreational  resources  for Indian Tribes.
 Assistance is in the form of direct payments.
 The Indian Self-Determination and Education
 Assistance Act authorized this program.

 Water Resources on Indian Lands Program
 assists Tribes with water resource projects and
 the associated planning.  Assistance is in the
 form  of  direct payments. The Indian Self-
 Determination and Education Assistance Act
 authorized this program.

 Department of Transportation

 Wetland Mitigation  was authorized by the
 Intermodal Surface Transportation Efficiency
Act (ISTEA) of 1991. Its purpose is to ensure
that improvements developed for  the.surface
transportation system do not adversely affect
wetlands through grants, technical support,
research and education.

Stormwater Mitigation was also  authorized by
 ISTEA  with the purpose of improving and
 protecting  water quality from the potential
 adverse   effects   of  nonpoint   source
 discharges/stormwater runoff from highway
 and transit facilities. Assistance is provided
 with, grants, technical support, research and
 education.

 Environmental Protection Agency

 Indian General Assistance Program  Grants
 were authorized by the Indian Environmental
 General Assistance Program Act of 1992. The
 purpose is to provide general  assistance
 grants and technical assistance to Indian tribal
 governments  and  intertribal  consortia  to
 develop and  build  capacity to administer
 regulatory  and  multimedia  environmental
 programs  on  Indian lands.  Assistance is
 provided  in  the form  of grants, studies,
 monitoring, technical support, research, and
 training to support  environmental program
 development and capacity building.

 Indian Set-Aside WastewaterTreatmentGrant
 Program was authorized by section 518(c) of
 the Clean  Water  Act  with the  purpose  of
 assisting Indian tribes in planning, designing
 and building wastewater treatment systems.
 Assistance  is  provided  with  grants  and
 technical support.  This program pays up to
 100% of the costs.

 Nonpoint   Source  Implementation  Grants,
 authorized  by section  319(h) of the Clean
 Water Act, assist  states  in implementing
 agency-approved  section   319  statewide
 nonpoint  source  management   programs.
Assistance is provided in the form of grants. A
 nonfederal  match  of .at least 40 percent of
 project or program costs is required, except for
tribes which may on a case-by-case basis
receive approval for a lesser match.

Public Water  Systems  Supervision  assists
states and tribes  in implementing National
156

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                                                 Northern Great Plains Aquatic Assessment
Primary   Drinking   Water  Regulations.
Assistance is provided in grants to states and
tribes with primary enforcement authority for
the   National  Primary   Drinking  Water
Regulations.  Federal assistance is limited to
75% of eligible costs.  This grant program was
authorized by the Safe Drinking Water Act

Research, Special Studies Demonstrations,
Technical Assistance and Training authorized
by the Safe Drinking Water Act, develops or
expands the capabilities of state and municipal
programs to protect groundwater sources of
public water systems from contamination;
provide technical  assistance to small public
water  systems  to  achieve  and maintain
compliance  with  National  Drinking Water
Regulations. Assistance is provided in grants,
studies,  technical support,  research  and
education.

Small Community  Wastewater and Technical
Assistance and Outreach Program, authorized
by the Clean Water Act, provides  on-sjte
assistance  to  small   communities  with
wastewater   treatment  facility   operating
problems. Assistance is provided in the form
of grants.

State Revolving Funds Capitalization Grants,
authorized by the Clean Water Act, provides a
long-term source of financing to the states for
the construction  of  wastewater treatment
facilities and the implementation of other water
quality management  activities.  Assistance
provided is in the form of grants to states and
loans to local communities, intermunicipal and
interstate agencies and Indian Tribes.

Underground Injection Control Grants  were
authorized by the Safe Drinking Water Act with ',.
the purpose  of assisting  states and tribes in
assuming the primary role in implementing and
enforcing  UIC regulations.   Assistance is
provided  by  grants to states and tribes with
primacy.   Federal assistance to states is
limited to 75%.

Water Pollution Control - State and Interstate
Program Support, authorized by section 106 of
the Clean Water Act assists states, territories,
interstate  agencies and  qualified  tribes  in
establishing  and  maintaining  adequate
measures for prevention and control of surface
water and ground water pollution.  Assistance
is  provided in the form of grants.  Funds
cannot be used for construction, operation, or
maintenance of wastewater treatment plants.

Water Quality Grants were authorized by
section  104(b)(3)  of  the  Clean Water Act.
Their purpose  is to stimulate the creation of
unique  and new  approaches  to  meeting
stormwater, sludge, pretreatment, point source
control requirements.  Assistance is  provided
by grants to states, tribes, organizations and
individuals.

Wetlands  Protection  - State Development
Grants were authorized by the Clean Water
Act,  with the  purpose of encouraging  the
development of state and tribal  wetland
protection programs or to enhance those that
already exist. Assistance is provided in grants
and technical assistance. Funds must be used
for the  development, not  operation,  of a
program and states and tribes must provide at
least a 25% match.

Advance   Identification  of  Wetlands  is
conducted  by the  EPA  and the Corps of
Engineers with state and local involvement for
wetland areas that have important values and
are under pressure from development.  The
result is a designation of areas as suitable or
unsuitable for use as  a discharge site and an
anticipatory method  of protecting  the most
valuable areas.

Clean Lakes Program, authorized by Section
314 of the Clean Water Act, is a grant program
to provide assistance to States for restoration
                                                                                  157

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 Chapter 4 • Water Laws and Restoration Programs

 of publicly-owned lakes.   It has not been
 funded since Fiscal Year 1994.

 Community-BasedEnvironmentalProtections
 an EPA approach to manage the quality of air,
 water, land and living resources in a place as
 a whole while working with numerous partners,
 including the local community (EPA, 1997b).
 EPA's role varies in each area.

 Sole Source Aquifer Protection is authorized
 under Section  1424(e) of the Safe Drinking
 Water Act of 1986.

 Source  Water Protection is  a community-
 based  approach to protecting sources of
 drinking water from contamination  (EPA,
 1997b).

 Wellhead  Protection   Program  protects
 groundwater sources of drinking water from
 contamination.     The  recharge  area  is
 delineated, nonpoint sources of pollution
 are identified and the community is informed
 and implements solutions (EPA, 1997b).

 State of North Dakota

 Environmental  Easement  Program - This
 program is designed to ensure long-term
 protection of environmentally sensitive land.
 Eligible land includes riparian corridors, CRP
 land coming out of  retirement and  critical
 wildlife habitat for threatened and endangered
 species. Land is protected using permanent or
 maximum duration easements.

 North Dakota  Habitat  Stamp  and Interest
 Money Programs - These programs provide 25
 to 35  percent  cost-sharing  for wetlands
 restored or developed under the Agricultural
 Conservation Program  or CRP.  At least
21,000 acres have been restored or enhanced
in North Dakota  through this program.
158

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 Impacts of Human Activities
 5.1 INTRODUCTION

 Question 4  What are the current and
 potential effects  on aquatic resources
 from various human activities?

    The  impacts to water quality, aquatic
 species and  aquatic habitats  from  human
 activities is examined in this chapter.  These
 include human population described in section
 5.2, hydrologic modifications such as dams,
 diversions and channelization  described in
 section  5.3,  effects  from  point  source
 dischargers such as cities and industries and
 nonpoint source effects such as runoff from
 cropland (section 5.4).  Included as well are
 sections summarizing impacts to ground water
 (5.5) and aquatic species (5.6).

 5.2 HUMAN POPULATION

 Introduction
                                    V

    An overall indicator of impacts, though not
 necessarily directly, is  human population.
 Human population throughout the NGPAA is
 generally   low, with  no  cities  having  a
 population  greater than 85,000.   However,
where population is concentrated, greater and
different impacts can occur. This parameter is
discussed up front due to the varying impacts
population may have on aquatic systems.

Key Findings

•Human population  in the NGPAA is mainly
centered around a number of cities (Billings,
Fargo, Bismarck,  Rapid City, Casper,  etc).
Much of the area has a low population density.
•Human population growth is occurring fastest
in  counties with the larger cities, the  area
surrounding the Black Hills, southern Montana,
northeastern Wyoming and in  a  number of
Indian Reservations.
Data Sources

    This information was obtained from U.S.
Census Bureau data estimates for 1995 and
changes in population was determined by
comparing the 1980 Census figures and the
1995 estimates.

Spatial Patterns

    Figure  5.2.1  shows the distribution of
population in the Northern Great Plains.  The
counties  with   the   largest  population
correspond to  the largest  cities such  as
Yellowstone County, Billings, MT; Cascade
County, Great Falls, MT; Pennington County,
Rapid City, SD; Natrona County, Casper, WY;
Cass County, Fargo, ND; Grand Forks County,
Grand Forks, ND; Burleigh County, Bismarck,
ND and Ward County, Minot, ND. All of these
counties have more than 50,000 people. Also
important in gauging impacts and trends are
the changes in population (Figure 5.2.2).  The
population changes between 1980 and 1995
from Census Bureau data are shown.  Most of
the counties in the Northern Great Plains are
losing population.  The  counties that are
gaining are those with most of the larger cities
and those in or close to Indian Reservations.
The largest percentage increases are in Cass
and Burleigh Counties, ND; Pennington, Todd
and  Lawrence   Counties,  SD;  Campbell
County, WY; and Glacier,  Lewis and Clark,
Stillwater and  Yellowstone Counties,  MT.
Change with regard to where people move
effects the aquatic environment in a number of
ways. Population increases in a certain area
cam mean more  development and therefore
changes to the  hydrologic  regime  of local
streams, non point source pollution,  more
stormwater runoff, larger loadings to municipal
treatment plants and sometimes an increase in
the  number  of  point  sources  (separate
municipal  discharges,   new  industrial
discharges).
                                                                               159

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                                                                                          Total Population
                                                                                               440-10000
                                                                                               10001 • 25000
                                                                                               25001 - 50000
                                                                                               50001 - 125000
Figure 5.2.1 Total Population Per County in the Northern Great Plains

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                                                                                           Percent Change
                                                                                            in Population
Figure 5.2.2 Percentage Change in Population by County from 1980 to 1995

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 Chapter 5 - Impacts of Human Activities

 5.3 HYDROLOGIC EFFECTS

 Introduction

     Hydrologic   and   aquatic   habitat
 modifications occur throughout the Northern
 Great   Plains  under  many   different
 circumstances,  especially  in  areas  with
 cropland (irrigated and non-irrigated), livestock
 grazing, flood control and development.

    Discussed in this section are modifications
 to both the habitat in and around waterbodies
 and modifications to flow.  These include the
 removal of streamside vegetation, excavation
 of streambed material, alteration of the natural
 drainage pattern by development activities,
 channelization, dewatering and damming (U.S.
 Environmental Protection  Agency,  1995).
 Removal of streamside vegetation increases
 erosion  and destabilization of banks since
 roots are important in holding soil in place.

   The removal of vegetation  also causes
 stream temperatures to increase due to loss of
 shade.  Temperature increases can be high
 enough   to   be   detrimental  to  aquatic
 organisms. Excavation of streambed material
 can remove nesting and spawning  habitat for
 fish.  Development activities add  pavement
 and,  therefore, additional flow to nearby
 streams   which  increases  the   intensity,
 magnitude  and  energy  of  runoff  (U.S.
 Environmental  Protection   Agency,  1995).
 These flow changes can lead to erosion and
 later deposition of sediment as the stream
 adjusts to the new hydrology.  These runoff
 changes can also alter peak  flows within
 nearby aquatic systems.  Wetland drainage
 can  also  change the hydrology by adding
 additional flow that-would have been released..
 more slowly.

   Channelization can lead to the loss of side
channels, oxbows, backwaters and sandbars,
all important  habitat to native  species  and
 increase downstream flooding. The effects of
 dewatering through diversions for irrigation or
 other uses are important, since the reduction
 in flow at  critical times or the loss of water
 entirely  is  devastating  to  the  aquatic
 community.

    Many of the  effects of dams have been
 discussed previously in this report such as the
 trapping of sediment, changes in temperature
 downstream, blocking of migration patterns
 and the loss of high flood flows.  The loss of
 high flood  flows  can  cause the  loss  of
 spawning cues for fish, reduce cottonwood
 and willow regeneration and cut off fish and
 wildlife access to backwaters (U.S. Fish and
 Wildlife Service,  1994).

    In  the  parts  of the  NGPAA with large
 amounts of row  crops, runoff will be greater
 than from natural or pasture conditions, also
 affecting the hydrology of streams. Grazing of
 riparian areas in  which  large amounts of
 vegetation  are removed will also change the
 flow regime, causing water to move more
 quickly through the system.

 Key Findings

 •Watersheds with the greatest  number of
 stream miles impacted from channelization arc
 the Middle Platte-Buffalo, the Upper Tongue,
 the Niobrara Headwaters, the Lower Souris
 River, the Maple River in North Dakota, the
 Lower Sheyenne, the Middle Musselshell and
 the Smith River.
 •Watersheds with  the greatest  number of
 stream miles impacted from dams, diversions
 and  wetland drainage are  the Upper and
 Lower Tongue, the Lower Powder, the Sun
 River, the Upper Missouri-Dearborn, the Lower
 Bighorn, the Lower Souris, Upper Sheyenne,
 Pembina, Middle Sheyenne,  Upper James,
 Lower Sheyenne, Maple  River and the
Western Wild Rice River.
•Watersheds with  the greatest  amount of
162

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                                                 Northern Great Plains Aquatic Assessment
 irrigated  acreage  are   the  Milk,  Teton,
 Yellowstone, Platte, North Platte, Lower Loup,
 Niobrara,  Elkhom, Belle Fourche, Upper
 Tongue and Lewis and Clark Lake. Relatively
 little irrigated cropland occurs throughout much
 of North Dakota, South Dakota, the Sand Hills
 and outside of major river valleys in eastern
 Montana and northeastern Wyoming.

 Data Sources

   Information on water use changes for the
 years 1985,1990 and 1995 was obtained from
 the U.S.  Geological Survey's WATSTORE
 database.  Most of the information regarding
 impacts to water quality from impoundments,
 channelization, diversions, etc. came  from
 state 305(b) reports for 1994 and 1996, as well
 as the U.S. Army Corps of Engineers' Draft
 Environmental  Impact  Statement  for  the
 Missouri River operations and from literature
 reviews.

 Data Quality and Gaps

   As  mentioned  earlier,  it is  difficult  to
 compare the information within state 305b
 reports across  statelines and this should be
 done  with caution.  For example, differing
 definitions  of  impacts  from  hydrologic
 modification between states, leads to differing
 amounts of stream miles  that are considered
 impacted  by  hydrologic modification.    In
 addition, it  must be stressed that these refer to
 assessed  stream  miles.  The  population
 surveyed in any given watershed may or may
 not be enough to. draw conclusions about the
 entire watershed.

 Spatial Patterns

   Figure 5.3.1 shows the miles of assessed
streams impacted  by channelization in the
 NGPAA, that is, the miles of streams that are
not fully supporting designated uses as a
result  of channelization.   Watersheds  with
 more  than 50 miles of assessed  streams
 impacted by channelization are the Middle
 Platte-Buffalo, the Upper Tongue, the Niobrara
 Headwaters, the  Lower Souris  River,  the
 Maple  River  in  North  Dakota, the Lower
 Sheyenne, the Middle Musselshell and the
 Smith River. Figure 5.3.2 presents the miles
 of assessed streams impacted by hydrologic
 modifications.such as dams, diversions and
 wetland drainage. Watersheds with more than
 100 miles impacted by these activities are the
 Upper and Lower Tongue, the Lower Powder,
 the Sun River, the Upper Missouri-Dearborn,
 the Lower Bighorn, the Lower Souris, Upper
 Sheyenne, Pembina, Middle Sheyenne, Upper
• James, Lower Sheyenne, Maple River and the
 Western Wild Rice River.

   The  acreage   of  irrigated  land   per
 watershed in  the Northern Great Plains is
 shown  in  Figure 5.3.3  and  Rgure 5.3.4
 presents this  information by county.  This
 information is included here due to the effects
 irrigation has on the hydrology of streams as a
 result of dams and diversions. There are also
 water  quality  effects which are  unique to
 irrigated areas, described in Section 5.4. The
 western and southern areas of the  NGPAA
 have the most irrigated land, with the highest
 in the  Platte,  Teton and Yellowstone  river
 basins. There is a total of 3,619,018 acres of
 irrigated cropland  in the NGPAA (U.S.  Natural
 Resources Conservation Service, 1992).

 Future Trends

   Wetland losses appear to be  slowing or
 even reversing in some parts of the NGPAA,
 which will most likely contribute to an improved
 hydrology in those areas.  It remains to be
 seen if any changes in the  operations of
 various  dams in  the   region  will  occur,
 therefore, improving the hydrologic regimes of
 the downstream stream reaches. Changes in
 the amounts of water used for irrigation are
 occurring in the NGPAA.  For example, water

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 Chapter S - Impacts of Human Activities
 use (both ground and surface) for agriculture
 increased in the southern and western portions
 of the  NGPAA, while it decreased in many
 areas in the central NGPAA (see Chapter 6).
 Changes in surface water use for agriculture
 will have corresponding effects on the aquatic
 systems in those areas.

 5.4 POINT/NONPOINT SOURCE POLLUTION
 EFFECTS

 Introduction

 Point Sources

    Point sources are discharges that originate
 from a distinct point such as a pipe or a ditch.
 They  are  regulated  under  the National
 Pollutant  Discharge   Elimination  System
 (NPDES) and a permit is  required to discharge
 to waters of the United States.  The most
 important point sources within the Northern
 Great  Plains  are  municipal  facilities,
 agricultural  processing  facilities,   mines,
 refineries, oil and gas production facilities and
 certain sized feedlots. It is important to note
 that stormwater runoff from industrial sites and
 from some cities is defined as a point source
 under the Clean Water Act.

   While mines, refineries and oil and gas
 facilities may discharge  metals and organic
 chemicals, most pollutants from the majority of
 point sources in the NGPAA are constituents
 such as biochemical oxygen demand (BOD),
 ammonia, fecal colifomns,  suspended solids
 and pH.   These are  the  most  common
 pollutants controlled in Northern Great Plains
 NPDES permits.

 Nonpoint Sources _.

   Nonpoint source pollution includes runoff
from animal feeding operations not required to
have  an  NPDES  permit, grazing  areas,
cropland,  urban  areas  (not  covered  by
 stormwater regulations), septic tanks, roads
 and road construction, atmospheric deposition
 and irrigation return flows, which are exempt
 as a point source.  Livestock feeding areas
 and grazing areas can contribute nutrients,
 sediment  and  pathogens  to waterbodies.
 Cropland  runoff  can   contain  nutrients,
 sediment  and pesticides.  Irrigation return
 flows may contain most of these, in addition to
 salinity  and  sometimes  toxics  such  as
 selenium.1 Urban runoff can have nutrients,
 pathogens and   other pollutants such  as
 pesticides from  lawns and  organics from
 parking lots and other areas. Roads and road
 construction can contribute sedimentto nearby
 streams. This includes roads constructed for
 natural resource exploration and extraction.

    Nonpoint source pollution is the greatest
water qualify problem in the Northern Great
 Plains, both because of its prevalence and the
 lack of regulatory  controls available.   Its
 prevalence is due to agriculture's dominance in
the region.

 Key Findings

•Areas  with  the   most  major  NPDES
dischargers are in the Platte River basin, the
Missouri River near Bismarck,  the Black Hills
and the Billings, Montana area.
•Watersheds with the greatest total number of
 NPDES dischargers  (major and  minor) are
Lewis and Clark Lake, Upper Elkhom, Middle
Platte-Buffalo,  Middle  North  Plane  River-
Scottsbluff, Lake  Sakakawea, Little  Powder
River,   Beaver  Creek   (Cheyenne   River
watershed), Lance Creek, Salt Creek (Powder
River watershed) and the Middle North Platte
River-Casper.
•Watersheds  with the greatest number of
assessed stream miles reported impacted by
municipal point sources are in the Yellowstone,
Milk, Platte,  Loup, Powder and  Cheyenne
basins.
•Watersheds with the greatest number of
164

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                                                                                             Channelization
                                                                                             Impacts, miles
                                                                                                  Not Assessed
Figure 5.3.1 Miles of Assessed Streams in Each Watershed Impacted by Channelization

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                                                                                           Hydrologic
                                                                                          Impacts, miles
                                                                                               Not Assessed
                                                                                               O
                                                                                               1-50
                                                                                               51 -100
                                                                                               >100
Figure 5.3.2 Miles of Assessed Streams in Each Watershed Impacted by Hydrologic Disturbance, such as Dams,
Diversions and Wetland Drainage

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                                                                                          Irrigated Acreage,

                                                                                             WOO Acres
                                                                                               5* -200
                                                                                               >200
Figure 5.3.3 Irrigated Acreage by Watershed in the Northern Great Plains

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                                                                                               Irrigated
                                                                                             Cropland, Acres
                                                                                                0 - 25000
                                                                                                25001 • 50000
                                                                                                500O1 - 100000
                                                                                                > woooo
Figure 5.3.4 Acres of Irrigated Cropland by County in the Northern Great Plains

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                                                Northern Great Plains Aquatic Assessment
assessed stream miles impacted by pathogens
(fecal coliforms) include Lake Sakakawea,
Lower Heart River, Upper James, White River,
Lower Yellowstone, Lower Powder, Fort Peck
Reservoir, Lower Cheyenne and Middle Platte-
Buffalo.
•Watersheds  with the greatest  number of
assessed stream miles impacted by organic
enrichment are the Lower, Middle and Upper
James, the Upper Sheyenne and the Lower
Souris.
•Watersheds  with the greatest  number of
assessed stream miles impacted by metals are
predominantly in the Yellowstone and Upper
Missouri (including Lake Sakakawea) basins.
•Watersheds  with the greatest  number of
assessed stream miles impacted by animal
feeding  operations  are in the Sheyenne,
James,  White,  Cheyenne,   Souris,  Lake
Sakakawea, Knife,  Heart and  Cannonball
basins.
•Watersheds  with the greatest number of
stream miles impacted by resource extraction
(mining, oil and gas) activities  are the Clacks
Fork of the Yellowstone, Smith River, Lower
Powder, Upper Powder, Clear Creek (Powder
Basin),  Lower  Yellowstone,   Upper  Little
Missouri  and  Cheyenne River-Angostura
Reservoir.
•The greatest number of mines  of all types
are located in northeastern Wyoming, western
South Dakota, the  Black Hills  region  and
mountain areas along the western edge of the
NGPAA.
•Agricultural activities  in general impact the
ability of assessed streams to meet designated
uses across large areas of the  NGPAA.
•Watersheds with the greatest number of
assessed stream miles impacted by nutrients
are the Upper Powder, Lower Yellowstone-
Sunday, Middle  Milk, Cedar Creek (in North
Dakota), Lower Souris, Upper James, Western
Wild Rice River, Maple  River and Lower
Sheyenne.
•Watersheds with the greatest number of
assessed stream miles impacted by siltation
are the Western Wild Rice River, the Lower
Sheyenne, Cedar Creek, Lower Heart, Upper
Powder, Clarks Fork of the Yellowstone, Upper
Missouri-Dearborn and the Smith  River.
•Watersheds  with the  greatest  number of
assessed stream miles impacted  by irrigated
crop production are mainly in Montana and
Wyoming.
•Watersheds.with the-greatest  number of
assessed   stream  miles   impacted  by
nonirrigated  crop production  are primarily
centered on North Dakota.
•Watersheds  with the  greatest  number of
assessed stream miles  impacted by grazing
and rangeland uses are in the Yellowstone
basin, Upper Missouri-Dearborn, Middle Milk,
Upper  Powder,  Cedar Creek,  Lower Heart,
Lower Souris, Lake Sakakawea, Lower Little
Missouri and the Lower Sheyenne.
•Watersheds  with the  greatest  number of
assessed stream miles impacted by thermal
modification are the Sun, Smith, Lower Belle
Fourche, Lower Grand, Redwater and Poplar
Rivers.
•Watersheds  with the  greatest  number of
assessed stream miles  impacted by salinity
are in the Yellowstone and Tongue basins.
•The Universal Soil Loss Equation  predicts the
greatest potential for erosion in the NGPAA to
be in parts of western North Dakota and
southeastern South Dakota.
•The greatest concentration of total animal
units are in parts of Nebraska (due to  cattle
and hogs). The lowest concentrations are in a
swath  from   northeastern   Montana   to
northeastern North Dakota.
•The largest areas of harvested cropland are
in   eastern  and  central  North  Dakota,
northeastern South Dakota, along the Platte
River in Nebraska and northern Montana. The
lowest amounts are in northeastern Wyoming,
southeastern  Montana  and western South
Dakota.
•Pesticide runoff potential is greatest in the
Red River Valley, the  lower James,  lower
Missouri, lower Loup and Middle  Platte River
                                                                               169

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 Chapter 5 - Impacts of Human Activities
 basins.   The  lowest  is in western  South
 Dakota, northeastern Wyoming and most of
 Montana.
 •The greatest amounts of  nitrogen fertilizer
 used  are  in  eastern  and northern  North
 Dakota, the Platte River Valley and  north-
 central Montana. The  lowest amounts used
 are in western South Dakota and northeastern
 Wyoming.  Nitrogen runoff potential is greatest
 in the Platte Valley, eastern South Dakota and
 southeastern North Dakota.  It is  lowest in
 northeastern Wyoming and scattered areas of
 Montana.
 •Sediment delivery potential is greatest in
 parts of the Red  River Valley, Elm River
 (James  basin),  Lewis  and   Clark  Lake
 watershed and the Two Medicine River and
 the Teton River in the Upper Missouri basin. It
 is lowest in northeastern Wyoming,  the Sand
 Hills and southeastern and eastern Montana.
 •There are six superfund sites on the National
 Priority list  in the NGPAA.

 Data Sources

    The information on  point sources in this
 section was obtained from U.S. Environmental
 Protection  Agency  databases  including the
 Permits and Compliance System (PCS) and a
 database of permits by watershed developed
 by  EPA Region VIII. Data from the Index of
 Watershed  Indicators   was   also   used.
 Information on  impacts from point sources
 came from  state 305(b) reports.  Information
 on the numbers of livestock was obtained from
 the National Resources Inventory of the U.S.
 Natural Resources Conservation Service.

   Information  on  nonpoint  sources was
 obtained from  state 305(b)  reports, the
 National Resources Inventory from the U.S. ,
 Natural Resources Conservation Service, the
 U.S. Environmental Protection Agency's Index
of Watershed Indicators, the U.S. Geological
Survey's information on pesticide application
(based on  pesticide use data from 1990 to
 1993 and 1995 from the National Center for
 Food and Agricultural  Policy and  on crop
 acreage from the 1992 Census of Agriculture
 from NRCS).

 Data Quality and Gaps

    As was mentioned earlier with regard to the
 305(b) reports, much of the assessments are
 not based on monitoring, but on evaluations
 using other data and methods for using
 available data, preparing the 305(b) reports
 and defining use support varies from state to
 state. Comparisons between states should be
 made with caution.

 Spatial Patterns and Trends

    Figure 5.4.1 shows the number  of major
 point source dischargers by watershed  and
 Figure 5.4.2 shows the total number, major
 and minor,  dischargers per watershed.  A
 major discharger is generally defined as a
-municipal facility that discharges an average of
 more than one million gallons per day or an
 industrial facility that meets certain discharge
 volume and effluent constituent criteria. The
 largest number of major NPDES  dischargers
 are in the Platte River basin, the Missouri River
 near Bismarck, the Black Hills and the Billings,
 Montana area. The largest number of total
 dischargers  (major and minor) are in the Lewis
 and Clark Lake, Upper Elkhom, Middle Platte-
 Buffalo, Middle North Plane River-Scottsbluff,
 Lake Sakakawea, Little Powder River, Beaver
 Creek (Cheyenne River watershed),  Lance
 Creek, Salt Creek (Powder River watershed)
 and the  Middle North  Platte River-Casper
 watersheds.  It is important to note that sheer
 numbers of  point source dischargers do not
 necessarily translate into larger effects than an
 area with fewer. This is because point sources
 are controlled  under NPDES.  However, a
 large number in an area can be a problem if
 effluent  limits for each   have  not  been
 developed in conjunction  with  other point
170

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                                                Northern Great Plains Aquatic Assessment
sources. In addition, a few large point sources
can be more important than many small ones
in terms of pollutant loading. Tables 5.4.1 and
5.4.2 list the watersheds with the most NPDES
major permits and total permits.

   The assessed miles of stream impacted by
municipal point sources  is shown in  Figure
5.4.3. The watersheds with greater than 100
miles of streams impacted are in the Milk,
Yellowstone,  Powder  and  Platte  basins.
Significant impacts  are also reported for the
Cheyenne, Loup and Upper Elkhom basins.

   Figure 5.4.4 shows the location of mines of
all types (coal, hard rock, sand and gravel,
etc.) within the NGPAA.  The areas with the
greatest concentration are in the Black Hills,
western North Dakota, northeastern Wyoming
and in mountainous areas along the western
boundary of the NGPAA. Information for mines
in Nebraska was not available for this analysis.
Figure  5.4.5 shows the  miles of assessed
streams in each watershed impacted by mining
and oil and gas extraction.  Those with more
than 100 miles impacted are the Smith, Clarks
Fork of the Yellowstone, Lower Powder, Upper
Powder and  Clear Creek (within the Powder
River basin).  Significant impacts also exist
within  the   Upper  Little  Missouri,  Lower
Yellowstone,   Cheyenne  River-Angostura
Reservoir, Belt Creek and Crazy Woman
Creek watersheds.

   Lake  Sakakawea and the Lower Heart
have more than 200 miles of impacts from
pathogens, as measured by fecal coliforms
(Figure 5.4.6).  Other areas where pathogens
are important contributors to impacting uses
include Fort Peck Reservoir, the White River
basin, Lower Cheyenne, Upper James, Lower
Yellowstone,  Middle  Platte-Buffalo,  Lower
Little Missouri and  the Knife  River.   Figure
5.4.7 shows the miles  of assessed streams
impacted by organic  enrichment and low
dissolved oxygen, with the James, Sheyenne
and Souris basins having the greatest impacts.
The greatest impacts from metals, including
mercury, (Figure 5.4.8) are in some of the
Upper Missouri tributaries, the Yellowstone
basin (including the Tongue and Powder
Rivers), Lake  Sakakawea  and the Upper
Souris.   Figure 5.4.9  shows the miles of
assessed streams impacted by animal feeding
and holding operations. -Watersheds within
the Sheyenne, James, White,  Cheyenne,
Souris,  Lake Sakakawea,  Knife,  Heart  and
Cannonball basins are the most affected.

   The miles of assessed streams impacted
by agricultural  uses, including both cropland
and livestock impacts are shown in Figure
5.4.10.    As  is  presented, impacts from
agriculture on the ability of streams to meet
designated  uses  is  very  widespread
throughout the  NGPAA.  This is not surprising
since  agriculture is  a major activity in  this
region.  Figure 5.4.11 presents the miles of
assessed streams whose beneficial uses are
impacted by nutrient loadings.  The Upper
Powder, Lower Yellowstone-Sunday, Middle
Milk, Cedar Creek (in North Dakota), Lower
Souris,  Upper James,  Western  Wild  Rice
River, Maple River and Lower Sheyenne River
watersheds all  have more than 200 assessed
miles of streams not fully supporting uses due
to nutrients.    Figure  5.4.12 'presents  this
situation with  respect to  siltation, with the
Western  Wild  Rice  River,  the  Lower
Sheyenne, Cedar Creek, Lower Heart, Upper
Powder, Clarks Fork of the Yellowstone, Upper
Missouri-Dearborn and the Smith River most
impacted.

   Salinity impacts are presented in Figure
5.4.13.  Areas where irrigation is important
show up as areas with  high salinity impacts,
such as the Yellowstone and Powder basins,
but also the Upper Missouri tributaries  and
northwestern South Dakota. The Yellowstone
basin, Upper Missouri-Dearborn, Middle Milk,
Upper Powder, Cedar Creek, Lower Heart,
                                                                                 171

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Figure 5.4.1 Major NPDES Dischargers by Watershed in the Northern Great Plains

-------
                                                                                           0-5
                                                                                           6-15
                                                                                           16-30
                                                                                           >30
Figure 5.4.2 Total NPDES Dischargers (Major and Minor) by Watershed in the Northern Great Plains

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 Chapter 5 - Impacts of Human Activities
 Table 5.4.1  Watersheds in the Northern Great Plains Assessment Area with the Most Major
 NPDES Dischargers.
Code
10130101
10070004
10120202
10200101
10120203
10180009
10190018
10100004
All Others
Name
Missouri R (Painted Woods-Square Butte)
Upper Yellowstone-Lake Basin
Lower Belle Fourche River
Middle Platte River-Buffalo
Redwater River
Middle North Platte River-Scotts Bluff
Lower South Platte River
Lower Yellowstone River

Major Dischargers
5
5
5
4
4
3
3
3
2 or less
Table 5.4.2 Watersheds in the Northern Great Plains Assessment Area with the Most Total
Number of NPDES Dischargers.
Code
10120107
10200101
10180009
10170101
10180007
10110101
10090204
10120104
10220001
10090208
Name
Beaver Creek
Middle Platte River-Buffalo
Lower South Platte River
Missouri River-Lewis and Clark Lake
Middle North Platte River-Casper
Missouri River-Lake Sakakawea
Salt Creek
Lance Creek
Upper Elkhom River
Little Powder River
Total Dischargers
80
75
47
46
44
37
35
35
32
31
Lower Souris, Lake Sakakawea, Lower Little
Missouri and the Lower Sheyenne have the
greatest  number of  miles  of  assessed
streams not supporting uses due to grazing
(Figure 5.4.14).  Figure  5.4.15 shows the
miles of streams impacted by irrigated crop
production  with Montana  and  Wyoming
showing most of the impacts.  Rgure 5.4.16
shows the  miles of streams impacted by
nonirrigated crop  production with  impacts
centered on North Dakota, especially in the
Cedar Creek, Lower Heart, Lower Souris,
Western  Wild  Rice,  Maple  and  Lower
Sheyenne watersheds. Significant impacts
also occur in northern Montana and eastern
and northwestern South  Dakota.  Thermal
modification impacts the largest areas in the
Poplar,  Redwater,  Sun  and  Smith  River
watersheds in Montana and the Lower Belle
Fourche  and Lower Grand watersheds  in
South Dakota (Figure 5.4.17).

   The amount of  harvested cropland per
county in the  Northern  Great Plains  is
presented in  Figure 5.4.18.  The largest
areas of cropland occur in  large areas  of
North  Dakota  (especially  the  eastern),
northeast South Dakota, along the Platte in
Nebraska  and  in  north-central   and
northeastern Montana.  There is a total  of
42,055,081 acres of harvested cropland in
the counties within the NGPAA (U.S. Natural
174

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                                                                                            Municipal Point
                                                                                            Source Impacts,
                                                                                                 miffs
Figure 5.4.3 Miles of Assessed Streams in Each Watershed Impacted by Municipal Point Sources

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Figure 5.4.4 Location of Mines (All Types) in the Northern Great Plains

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                                                                                            Resource Extraction
                                                                                              Impacts, miles

                                                                                            |    | No t Assessed



                                                                                                l> 100
Figure 5.4.5 Miles of Assessed Streams in Each Watershed Impacted by Resource Extraction (Mines, Oil and Gas)

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                                                                                        Pathogen Impacts,
                                                                                              miles
                                                                                             Not Assessed
                                                                                             0
                                                                                             1-100
                                                                                             101 -200
                                                                                             >200
Figure 5.4.6 Miles of Assessed Streams in Each Watershed Impacted by Pathogens

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                                                                                        Organic Enrichment
                                                                                           Impacts, miles
Figure 5.4.7 Miles of Assessed Streams in Each Watershed Impacted by Organic Enrichment or Low Dissolved Oxygen

-------
                                                                                          Metals Impacts,
                                                                                               miles
                                                                                               Not Assessed
                                                                                               0
                                                                                               1-50
                                                                                               51-100
                                                                                               > 100
Figure 5.4.8 Miles of Streams in Each Watershed Impacted by Metals

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                                                                                          Animal Feeding
                                                                                            Operations
                                                                                           Impacts, miles
                                                                                               Not Assessed
                                                                                               0
                                                                                               I -50
                                                                                               51  -100
                                                                                               >100
Figure 5.4.9 Miles of Assessed Streams in Each Watershed Impacted by Animal Feeding or Holding Operations

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                                                                                            Agriculture
                                                                                           Impacts, miles
                                                                                                Not Assessed
                                                                                                0
                                                                                                1-100
                                                                                                101 - 200
                                                                                                >200
Figure 5.4.10 Miles of Assessed Streams in Each Watershed Impacted by Agriculture (Cropland and Livestock)

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                                                                                         Nutrient Impacts,
                                                                                               miles
                                                                                              Not Assessed
                                                                                              0
                                                                                              1-100
                                                                                              101-200
                                                                                              >200
Figure 5.411 Miles of Assessed Streams in Each Watershed Impacted by Nutrients

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                                                                                            Siltation Impacts,
                                                                                                 miles
                                                                                                 Not Assessed
                                                                                                 0
                                                                                                 I- WO
                                                                                                 101 -200
                                                                                                 >200
Figure 5.4.12 Miles of Assessed Streams in Each Watershed Impacted by Siltation

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                                                                                           Salinity Impacts
                                                                                                miles
                                                                                                  t Assessed
                                                                                                0
                                                                                                I -100
                                                                                                101 - 200
                                                                                                >200
Figure 5.4.13 Miles of Assessed Streams in Each Watershed Impacted by Salinity

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                                                                                         Grazing Impacts,
                                                                                              miles
                                                                                              Not Assessed
                                                                                              0
                                                                                              I- 100
                                                                                              101-200
                                                                                              >200
Figure 5.4.14 Miles of Assessed Streams in Each Watershed Impacted by Grazing and Rangeland Uses

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                                                                                           Irrigated Crop
                                                                                           Impacts, miles
                                                                                                Not Assessed
                                                                                                °
                                                                                                I-100
                                                                                                101 -200
                                                                                                >200
Figure 5.4.15 Miles of Assessed Streams in Each Watershed Impacted by Irrigated Crop Production

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                                                                                           Nonirrigatcd Crop
                                                                                            Impacts, miles
                                                                                                Not Assessed
                                                                                                I- 100
                                                                                                101 -200
                                                                                                >200
Figure 5.4.16 Miles of Assessed Streams in Each Watershed Impacted by Nonirrigated Crop Production

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                                                                                            Thermal
                                                                                          Modification
                                                                                          Impacts, miles
                                                                                          [    | Not Assessed
                                                                                           ~~
                                                                                               1-50
                                                                                               51-100
                                                                                               >100
Figure 5.4.17 Miles of Assessed Streams in Each Watershed Impacted by Thermal Modifications

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                                                                                              Harvested
                                                                                            Cropland, Acres

                                                                                            pf|0. 700000
                                                                                                 00001 -250000
                                                                                                250001 • 500000
                                                                                                > 500000
Figure 5.4.18 Acres of Harvested Cropland by County in the Northern Great Plains

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                                                 Northern Great Plains Aquatic Assessment
 Resources Conservation Service, 1992).

   Figure 5.4.19 shows the amount of total
 animal units by county. Total animal units is
 a means of gauging the  impact of livestock
 by setting the numbers of various livestock
 (hogs, sheep, etc.) equal to one beef cow in
 terms of the waste produced.  Therefore, if
 one beef cow is the unit of measurement, ten
 sheep  are  equal  to  one   beef cow.
 Additionally, 0.7 milk cows and 2.5 hogs are
 each  equal  to  one beef  cow.   A larger
 number of hogs or sheep is needed to equal
 the potential impact of a  smaller number of
 beef or milk cows.  This follows the EPA
 regulations for concentrated animal feeding
 operations. A certain number of total animal
 units in a confined animal feeding operation
 is  regulated as  a point source.  This is
 generally the equivalent of 1000 beef cattle
 (and therefore, 10,000 sheep, 2500 hogs or
 700 milk cows).  However, the regulations
 allow for controls on lesser numbers if water
 quality impacts  are  evident.   Farms with
 lesser numbers are generally considered to
 be nonpoint sources and most operations are
 smaller.

   There is a total of 6,367,614 total animal
 units (based on beef cattle, milk cows, hogs
 and sheep) in the NGPAA. Several counties
 in  Nebraska stand out as areas with the
 highest  number of total  animal units,  and
therefore the highest potential impact from
 livestock operations.   There  is  a general
 pattern of higher total animal units in the
 central, southern and western  areas of the
 Northern Great Plains, with much less in the
northeastern portions.  The total number of
 beef cattle in the NGPAA is 4,803,302, with
the greatest concentration in the Sand Hills
of Nebraska  and  southern   and  central
Montana.  The total number of hogs  is
2,794,254 and the greatest concentration is
in eastern South Dakota, southeastern North
Dakota and eastern Nebraska, with very low
 numbers elsewhere in the NGPAA. The total
 number  of  sheep is 1,847,398  with  the
 greatest numbers in Garfield and  Carter
 Counties in Montana,  Harding and  Butte
 Counties in South Dakota and Campbell,
 Johnson, Natrona and Converse Counties in
 Wyoming.  It must be stressed that these
 numbers  only   indicate  where   potential
 impacts may-be highest, a number of factors
 such  as  runoff  potential,  management
 practices, and proximity to streams, all affect
 how much manure reaches streams.  Sheer
 numbers do  not necessarily correlate to
 nitrogen loading, but do show an area to be
 at increased risk.

   Figure 5.4.20 presents areas where the
 most nitrogen fertilizer was used for the year
 1985.    This   data  was   developed  by
Alexander   and  Smith  (1990)   by
 disaggregating state-level fertilizer use to the
 county level in proportion to the amount of
fertilized acreage in the counties.  Eastern
and northern North Dakota, the Platte River
of Nebraska and portions  of north-central
Montana have  the heaviest amounts  of
nitrogen fertilizer use.   This matches the
large amount of total harvested and irrigated
cropland in  those areas.   Figure 5.4.21
presents information  on fertilizer sales  by
county with data from 1991.

   The Lower James, Vermillion, Lewis and
Clark  Lake,  Middle  Platte,  Loup,  Upper
Elkhom and  several Red River watersheds
are among  the  areas  with  the highest
potential to deliver nitrogen to streams and
rivers  (Figure 5.4.22).  This  information is
from the Index of Watershed Indicators (U.S.
EPA,  1997a) and the National Resources
Inventory (U.S. NRCS, 1992) and  is  based
on the amount of nitrogen applied, the types
of crops grown, the nitrogen uptake  of the
crops, rainfall and surface  runoff potential.
For this reason, the maps showing the
amounts of nitrogen  fertilizer applied and
                                                                                 191

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                                                                                          Total
                                                                                       Animal Units
                                                                                            0 - 25000
                                                                                        •I 25001 • 50000
                                                                                            50001 -100000
                                                                                            > 100000
Figure 5.4.19 Total Animal Units by County in the Northern Great Plains (Beef Cattle, Milk Cattle, Hogs and Sheep)

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                                                                                              Nitrogen Fertilizer
                                                                                                Use, tons/year
                                                                                                    17.5-250
                                                                                                    251 - WOO
                                                                                                    1001 - 2500
                                                                                                    >2500
Figure 5.4.20 Nitrogen Fertilizer Use by County in the Northern Great Plains in 1985

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                                                                                         Nitrogen Fertilizer
                                                                                            Sales, tons
                                                                                              0-5000
                                                                                              5001 - JOOOO
                                                                                              iOOOI -15000
                                                                                              >15000
Figure 5.4.21 Nitrogen Fertilizer Sales Per County in 1991

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                                                                                                    Moderate
Figure 5.4.22 Nitrogen Runoff Potential from Farm Fields within the Northern Great Plains as Modified from the Index
of Watershed Indicators

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 Chapter 5 - Impacts of Human Activities
 sold does not necessarily match the map of
 potential nitrogen runoff.  Additionally, the
 runoff potential map is a relative ranking of
 where the potential is greatest within the
 NGPAA and it is modified from the Index of
 Watershed Indicators, which  ranks on  a
 national scale. For this reason, what is high
 in the Northern Great Plains may not be high
 nationally compared to other areas.  This
 was meant to show where potential is highest
 or lowest relative  to watersheds within the
 NGPAA.  For the NGPAA, those watersheds
 with a national ranking in the top one-third
 were placed in the high  potential category
 (the national ranking used the top 524 out of
 2110 as high). Some of the watersheds in
 the NGPAA were high nationally as well. For
 example, out of 2110, the Lewis and Clark
 Lake watershed (10170101) ranked 124th
 and the  Lower James (1016011)  ranked
 322nd.

    Areas with the lowest  nitrogen runoff
 potential are in the Upper Cheyenne, Powder
 and  parts of  the Milk  and  Musselshell
 watersheds.    The  Wild  Horse  Lake
 watershed (10050003) ranked the lowest in
 the entire NGPAA (2084th), with the Salt
 Creek   (10090204),  Antelope  Creek
 (10120101),  Dry  Fork  of  the Cheyenne
 (10120102), Lightning Creek (10120105) and
 Snake River (10150005) watersheds just
 above it.

    Figure 5.4.23 shows the potential runoff
 for pesticides, with the Lower and  Middle
 James,  Vermillion, Lewis and  Clark Lake,
 Medicine Creek and Fort Randall Reservoir
 watersheds, as well as parts of the Red River
 watershed having the greatest potential.
 This map is also derived  from the Index of
 Watershed Indicators information in a similar
 manner as the nitrogen runoff potential (i.e.
 national ranks rescaled into the  Northern
 Great Plains).  On a national  scale there
were 1577 watersheds ranked for pesticide
 runoff potential based on the  amount of
 pesticides  used,  crops grown and rainfall
 amounts and those ranked 395 or greater
 were labeled  as  high  potential.  Those
 ranked as "high potential" within the NGPAA,
 were those that ranked roughly in the top
 third nationally. The top three watersheds in
 the  NGPAA  are Lewis  and Clark  Lake
 (10170101) which ranked nationally 124th
 out  of 1577,  the Vermillion  watershed
 (10170102) at 127th and the Lower James
 (10160011) at 204th.

   The lowest potential  is for areas in
 southern Montana, western South Dakota
 and northeastern  Wyoming.   Wild Horse
 Lake (1005003), Boxelder Creek (10110202)
 and Frenchman Creek (10050013) all ranked
 near  the   bottom  nationally  for  potential
 pesticide runoff.

   The areas within the NGPAA where the
 largest number of pesticides are used in the
 heaviest amounts (more than 31 pounds per
 square mile) are eastern North Dakota with
 12, eastern South Dakota with 8, western
 Nebraska with 5 and eastern Nebraska with
 3 (U.S. Geological  Survey, 1998).. All other
 areas in the NGPAA use only one pesticide
 at levels greater than  31 Ibs/square mile
 (though they may  be different pesticides).
 Pesticides  with the heaviest  and  most
widespread use are2,4-D1.alachlor, atrazine,
cyanazine,   EPTC, and  metalachlor (U.S.
Geological  Survey, 1998).  Figures 5.4.24
and 5.4.25  show where the largest amounts
of atrazine and 2,4-D are used, respectively,
in the Northern Great Plains.

   Figure   5.4.26  presents the  sediment
delivery potential  by watershed.  This also
was adapted from the Index of Watershed
indicators. The IWI integrated information on
rainfall,   crop   growth,  agricultural
management practices and erosion potential
(among others) to develop the sediment
196

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                                                                                                  Insufficient Data
                                                                                                  Low
                                                                                                  Moderate
                                                                                                  High
Figure 5.4.23 Pesticide Runoff Potential from Farm Fields within the Northern Great Plains as Modified from the Index of
Watershed Indicators

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                                                                                             Atrazine Use,
                                                                                             Ibs/square mile

                                                                                            |	| Not Reported
                                                                                              ~~| 0 - 25000
                                                                                                 25001-50000
                                                                                                 50001 -100000
                                                                                                 > 100000
Figure 5.4.24 Use of Atrazine in the Northern Great Plains

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                                                                                           2,4-D Use,
                                                                                          Ws/square mile
                                                                                               3000 • 25000
                                                                                               25001 - 50000
                                                                                               50001 • 100000
                                                                                               > 100000
Figure 5.4.25 Use of 2,4-D in the Northern Great Plains

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                                                                                                 Moderate
Figure 5.4.26 Potential for Sediment Delivery to Streams from Cropland and Rangeland within the Northern Great Plains
as Modified from the Index of Watershed Indicators

-------
                                                 Northern Great Plains Aquatic Assessment
 delivery  potential  rankings.   The  entire
 NGPAA  ranked as low  to  moderate  on
 national scale, but this was adapted to show
 which areas had the highest potential within
 the NGPAA. A total of 2106  watersheds
 were ranked nationally (with 530 and above
 as high potential), but the highest potential in
 the NGPAA was defined  as  being roughly
 within  the  top  third  nationally.    The
 watersheds  that are within  the  top  third
 nationally are the  Pembina, the Red River
 (Elm-Marsh), Lewis and Clark Lake, the Elm
 River (James basin), the Two Medicine River
 and Big Sandy Creek (Milk basin). However,
 the highest of these, the Two Medicine River
 watershed (10030201)  in  Montana ranked
 only 533rd nationally, therefore, none were
 ranked high on a national scale.

   Low potential for sediment delivery exists
 in the Sand Hills of Nebraska and much of
 northeastern Wyoming. The South Fork of
 the Powder River (10090203) and Salt Creek
 10090204)   ranked  2091st  and  2090th,
 respectively, nationally.

   The potential agriculture erosion rate  by
 major land resource area in tons per acre per
 year estimated from NRCS' Universal Soil
 Loss Equation (USLE) is presented in Figure
 5.4.27. The USLE is used to predict soil loss
 from sheet and rill  erosion from a specific
 area taking into account  rainfall,  cropping
 management systems or ground cover and
 applied conservation pracitices.  The USLE
 does not estimate sediment yield to  given
 point in a watershed, it estimates only what is
 lost to  erosion,  not  what  is deposited
 downstream. Parts of western North Dakota
 (MLRA 58A) and southeastern South Dakota
 (MLRA 102B) are the areas with the highest
 potential erosion rates, with the Black Hills,
the  Sand  Hills,  eastern  Montana  and
 northeastern North Dakota as  the lowest
 (MLRAs 55A, 58A, 60B, 64, 65, 66 and 62).
   Figure  5.4.28  shows  the  miles  of
assessed  streams  not  fully  supporting
designated uses due to highway construction
and maintenance.  The Upper Musselshell,
Upper Yellowstone, Lower Tongue, Smith
and Belt River watersheds have the greatest
impacts  from  these  sources.    Road
construction and  maintenance  can affect
water quality because-often soil is exposed
to erosion.  The amount of road length near
streams can indicate  potential impacts.

   There are  six superfund  sites  on the
National  Priority List within  the NGPAA.
These are the  Arsenic  Trioxide  Site in
Richland  County,  North Dakota; the Minot
Landfill in  Ward County, North Dakota;
Ellsworth Air  Force  Base in  Pennington
County, South Dakota; Whitewood Creek in
Lawrence County, South Dakota; Mouat
Industries in Stillwater County, Montana and
the Mystery Bridge/US Highway 20 Site in
Natrona County, Wyoming. The Whitewood
Creek site is actually in the Black Hills but
has effects downstream in the plains.

Future Trends

   Population  growth in certain  areas may
lead  to more  point  source impacts  from
increased discharges, a greater number of
discharges and stormwater runoff during and
after construction.  Any  increases in the
number  and   size  of  animal  feeding
operations  or resource  extraction activities
will also create new  point source impacts.
The number of Superfund sites is unlikely to
grow significantly, and those that exist will
have localized effects.

.  Agriculture  is the greatest, though by no
means the sole,  contributor of nonpoint
source pollutants in the NGPAA. Therefore,
changes in the extent and type  of agricultural
operations, as well as efforts to alleviate
present sources, could have dramatic
                                                                                 207

-------
                                                                                       LISLE, tons/acre/year
                                                                                            0.3 -0.7

                                                                                       mm 22 .3.8
Figure 5.4.27 Soil Loss by Major Land and Resource Area as Calculated by the Universal Soil Loss Equation

-------
                                                                                         Highway Impacts,
                                                                                               miles
                                                                                              Not Assessed
                                                                                              Q

                                                                                              1-50
                                                                                              51-100
                                                                                              > 100
Figure 5.4,28 Miles of Assessed Streams in Each Watershed Impacted by Highway Construction/Maintenance

-------
 Chapter S - Impacts of Human Activities
 impacts on  nonpoint  source pollution to
 aquatic systems.

 5.5 IMPACTS TO GROUND WATER

    The water quality of ground water, much
 like that of surface water can be affected
 both  by  localized and very widespread
 sources.   In the case  of  ground water,
 however,  movement  is  generally  much
 slower and any pollutants reaching it will be
 much more difficult to remove.  Localized
 impacts  could  include  landfills,  spills  or
 injection wells;  while widespread  impacts
 occur  from  fertilizer  and  pesticide
 applications.

    Wyoming  lists  fertilizer  application,
 landfills, mines, pesticide application, shallow
 injection  wells,   storage  tanks,  surface
 impoundments, transportation of materials,
 waste tailings and oil and gas exploration
 and production  as the  major sources  of
 anthropogenic ground water contamination
 (Wyoming  Department  of  Environmental
 Quality,  1994).    Not  all   of  these  are
 necessarily important within the NGPAA.

    In South Dakota the ten highest priority
 sources of ground water contamination are
 agricultural   chemical   facilities,  animal
 feedlots, fertilizer applications, storage tanks
 (aboveground and underground),  surface
 impoundments,  landfills, septic systems,
 mining and mine drainage and mine waste
 tailings, and pipelines and sewer lines (South
 Dakota  Department of  Environment and
 Natural Resources, 1996).

    Montana states that  mining and  mine
 drainage, septic tanks, shallow injection wells
 and above and below ground storage  tanks
 as  the  highest  priority major sources of
 ground   water  contamination   (Montana
 Department of Environmental Quality, 1994).
 Dryland farming in Montana has  caused
 saline seeps in the eastern part of the state
 (U.S. Geological Survey, 1988). These are
 wet salty areas that are discharge zones for
 shallow water-table aquifers.

    Ground water use is discussed in Chapter
 6 and the areas of greatest use are outlined
 there. Within the NGPAA, Nebraska by far
 has the greatest ground water use.  This is
 concentrated within the Platte basin  and its
 tributraries and is mainly  drawn from  the
 Ogallalla  Formation  of the  High  Plains
 Aquifer.

 5.6 IMPACTS  TO AQUATIC SPECIES

    The  impacts described in this chapter,
 from  hydrologic  modifications,   habitat
 modifications,  point and nonpoint  source
 pollution can all affect the survival of aquatic
 plant and  animal  populations.    In   the
 Northern  Great Plains, fish  species  are
 threatened  specifically  by diversions  for
 irrigation, changes in hydrology due to dams,
 loss of riparian vegetation, the introduction of
 non-native  species   and  channelization
 (Ostlie, et al. 1997).

   There  are   several  Great Plains  fish
 species that were common 30 years ago that
 are now seriously threatened  (Ostlie, et al.
 1997). Declines are occurring in both small
 stream fish and those adapted to large turbid
 rivers.   Small, cool,  spring-fed  stream
 habitats are now becoming rare (Ostlie, et al.
 1997) and the flow modifications to the larger
turbid rivers are leading to the decline in
 native fishes. Fish species that are the best
adapted to plains rivers  habitats are in  the
most  danger, while  those  less adapted to
fluctuating, turbid   rivers  have increased
(Ostlie, etal. 1997).

   Dams and channelization of the Missouri
River have altered or  eliminated sandbars,
floodplain  forests and underwater aquatic
204

-------
 habitats (Ashton and Dowd, 1991).  Only 80
 miles of forested floodplain remain along the
 Missouri River out of an original 500 miles of
 riparian bottomland timber and this change
 has affected  the breeding habitat of the
 piping plover, interior least tern, whooping
 crane and wintering habitat of the bald eagle
 (Ashton and Dowd, 1991).  In addition, the
 spawning habitats and migrations of pallid
 sturgeon, paddlefish, sturgeon chub, sicklefin
 chub and finescale dace have been altered
 or eliminated, as well as habitats for the
 spiny softshell and false map turtles (Ashton
 and Dowd, 1991).

   Other major impacts to aquatic species
 are nonpoint sources from agriculture and
wetland drainage. The addition of sediment
 to waters is a major impact from agricultural
 and other practices.  Draining of wetlands
 eliminates  habitat outright for a number of
 species. The northern redbelly dace, banded
 killifish, trout-perch and central mudminnow
 are included in those fish species that have
 lost habitat (Ashton and Dowd, 1991).
                                      «
   Richter, et al. 1997 found  through a
survey of biologists that fishes in the western
united states are primarily suffering both
historically  and currently from  competition
with exotic species and secondarily from
habitat removal and damage and  altered
hydrologic  regimes  due  to  agricultural
surface water depletions and augmentations
as well as altered hydrology and  habitat
removal from agricultural and hydroelectric
impoundments.
                                                                                  205

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Water Usage
6.1 INTRODUCTION

Question  5  What are the status and
apparent trends  in  water usage and
supplies  within  the  Northern  Great
Plains Assessment Area?

   This chapter examines the use of both
surface  water and  ground water  in  the
Northern Great Plains, specifically, how much
is used for various types of activities. These
include public water supply, thermoelectric
cooling, agriculture and irrigation, to name a
few. The trends over a ten-year period for total
use, use by source (ground and surface) and
by type of use are examined.

6.2 WATER USAGE AND SUPPLIES

Key Findings

•The greatest total water use in the NGPAA is
in  the  Platte Valley of Nebraska and the
Missouri River near around Bismarck. Surface
water  use is greatest in the Missouri  near
Bismarck, in the Yellowstone, Platte and Milk
River basins. Ground water use is greatest in
the Platte, Niobrara, Loup and Elkhom basins
(Ogallala  Aquifer  - High  Plains Aquifer
System). Watersheds which use more than 25
million gallons per day  of ground water are
predominantly restricted to Nebraska.
•Overall, irrigation is the greatest single type of
use for water in the NGPAA. The greatest total
use (surface and ground) for irrigation is in the
Yellowstone, Platte,  Milk,  Niobrara, Lower
Loup and Elkhom basins.
•The greatest uses for thermoelectric use are
in the Missouri River near Bismarck-and the
Lower South Platte.
•The greatest uses for public supply are, not
surprisingly, in watersheds with  the largest
population.
•Water use  for agriculture  (irrigation and
livestock) declined during the period 1985 to
1995 in much of South Dakota, North Dakota,
northern Nebraska and eastern Montana, with
the greatest decreases seen in the Lower
Belle Fourche  and the  Middle  Niobrara
watersheds.  The greatest  increases were
seen in parts of the Platte,  Loup, Powder,
Tongue, Upper Yellowstone and Marais River
basins.
•Total water use changes during the period
1985 to 1995 closely match the changes in
agricultural water use.

Data Sources

   Most of the water  use information was
obtained from the Water Resources Division of
the U.S.  Geological Survey's  WATSTORE
database.  Information from the years  1985,
1990 and  1995 was   used.   Streamflow
information  was obtained from Storet and
covers the period 1980 to 1995.

Data Quality and Gaps

   WATSTORE provided  good coverage of
the  NGPAA, with  all  of the  watersheds
represented with detailed data categorized by
types of use, as well as totals for ground and
surface water usage.   Categories such  as
livestock, mining, irrigation, public supply,
thermoelectric cooling and a number of others
are  in  the  database.  The  system has
information  in five year increments, allowing
for the trend information presented in this
report on changes between 1985 and 1995.

Spatial Patterns and Trends

   Table 6.2.1  lists the  amounts of water
supplying domestic, industrial and agricultural
uses in  the   Northern  Great   Plains  by
watershed in 1995. Table 6.2.2 lists the total
amounts of ground water, surface water and
both used by watershed in 1995.
                                                                               207

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 Chapter 6 - Water Usage
Table 6.2.1 Water use in million gallons per day for each watershed in the Northern Great Plains
Assessment Area.
Code
09010001
09010002
09010003
09010004
09010005
09020101
09020104
09020105
09020107
09020109
09020201
09020202
09020203
09020204
09020205
09020301
09020306
09020307
09020308
09020310
09020311
09020313
10010002
10030102
10030103
10030104
10030105
10030201
10030202
10030203
10030204
10030205
10040101
10040102
10040103
10040104
10040105
10040106
10040201
10040202
10040203
Name
Upper Souris R
Des Lacs R
Lower Souris R
Willow Cr
DeepR
Bois de Sioux R
Upper Red R
Wild Rice R
Red R (Elm-Marsh)
Goose R
Devils Lake
Upper Sheyenne R
Middle Sheyenne R
Lower Sheyenne R
Maple R
Red R (Sandhill-Wilson)
Red R (Grand Marais-Red)
Turtle R
Forest R
ParkR
Lower Red R
Pembina R
St Mary R
Upper Missouri-Dearborn
Smith R
Sun R
Belt Cr
Two Medicine R
Cut Bank Cr
Marais R
Willow Cr
Teton R
Missouri R (Bullwacker-Dog)
Arrow Cr
Judith R
Missouri R (Ft Peck Reservoir)
Big Dry Cr
Little-Dry Cr
Upper Musseishell R
Middle Musseishell R
Flat Willow Cr
Domestic
3.36
0.57
0.54
0.54
0.65
0.82
5.18,
0.55
0.26
0.6
2.31
0.49
0.45
1.69
0.91
3.23
0.02
0.27
0.33
0.85
0.32
1.42
0.07
8.44
0.22
0.77
0.07
0.15
1.16
1.24
0.15
0.59
0.18
0.12
1.23
0.08
0.11
. 0.05
0.36
0.66
0.06
industrial
0.44
0.05
0.09
0
0.02
0.03
1.06
0.08
0
0.01
0.01
0
0
0.77
0
0.02
0.01
0.02
0
0.01
0.1
0.18
0
0.63
0.11
0
0
0
0.3
0.22
0
0.02
0
0
0.11
0
0
0
0
0.01
0
Agriculture
0.85
0.26
18.06
0.96
0.44
0.3
0.42
7.72
1.71
1.04
1.61
0.32
2.62
8.40
0.42
0.35
0.14
3.65
1.51
0.14
0.16
0.25
1.97
49.99
213.56
433.01
1.69
91.57
70.47
167.80
6.63
210.92
7.18
33.13
73.24
42.61
5.68
3.36
400.49
72.97
18.32
208

-------
Northern Great Plains Aquatic Assessment
Table 6.2.1 Water use in million gallons per day for each watershed in the Northern Great Plains
Assessment Area.
Code
10040204
10040205
10050001
10050002
10050003
10050004
10050005
10050006
10050007
10050008
10050009
10050010
10050011
10050012
10050013
10050014
10050015
10050016
10060001
10060002
10060003
10060004
10060005
10060006
10060007
10070002
10070004
10070005
10070006
10070007
10070008
10080015
10080016
10090101
10090102
10090201
10090202
10090203
10090204
10090205
10090206
mncmsn?
Name
Box Elder Cr
Lower Musselshell R
Milk R Headwaters
Upper Milk R
Wild Horse Lake
Middle Milk R
Big Sandy Cr
Sage Cr
Lodge Cr
Battle Cr
Peoples Cr
Cottonwood Cr
Whitewater Cr
Lower Milk R
Frenchman Cr
Beaver Cr
Rock Cr
Porcupine Cr
Missouri R (Prairie Elk-Wolf)
Redwater R
Poplar R
West Fork Poplar R
Missouri R (Charlie-Little Muddy)
Big Muddy Cr
Brush Lake
Upper Yellowstone R
Upper Yellowstone R-Lake Basin
Stillwater R
Clanks Fork of the Yellowstone R
Domestic
0.16
0.09
0.07
0.31
0.04
1.69
0.2
0.08
0.04
0.05
0.08
0.09
0.04
0.78
0.03
0.14
0.06
0.15
0.57
0.39
0.49
0.06
0.29
0.6
0.14
1.62
11.47
0.27
1.07
Upper Yellowstone R-Pompeys Pillar 0.92
Pryor Cr
Lower Bighorn R
Little Bighorn R
Upper Tongue R
Lower Tongue R
Middle Fork Powder R
Upper Powder R
South Fork Powder R -
SaltCr
Crazy Woman Cr
Clear Cr
MiHrflP Pnw/rter R
0.19
0.62
0.2
4.27
0.23
0.07
0
0
0.08
0
0.84
011
Industrial
0
0
0
0
0
0.02
0
0
0
0
0
0
0
0.08
0
0
0
0
0
0
0
0
0.05
0
0
0.05
0
0
0,12
9.68
0
0.02
0
0.06
0
0
0
0
0
0
0.01
	 n
Agriculture
56.11
12.61
4.43
3.47
2.31
284.98
3.17
6.88
9.38
26.79
34.52
12.22
6.21
90.64
7.07
69.41
12.70
1.00
72.84
15.87
7.44
2.50
54.38
10.70
1.84
422.66
320.74
71.91
603.72
104.14
14.49
226.30
176.73
552.08
40.71
70.98
134.9
44.40
28.45
63.19
218.74
	 17 Q*
                                  209

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 Chapter 6 - Water Usage
Table 6.2.1 Water use in million gallons per day for each watershed in the Northern Great Plains
Assessment Area.
Code
10090208
10090209
10090210
10100001
10100002
10100003
10100004
10100005
10110101
10110102
10110201
10110202
10110203
10110204
10110205
10120101
10120102
10120103
10120104
10120105
10120106
10120107
10120108
10120109
10120110
10120111
10120112
10120113
10120201
10120202
10120203
10130101
10130102
10130103
10130104
10130105
10130106
10130201
10130202
10130203
10130204
Name
Little Powder R
Lower Powder R"
Mizpah Cr
Lower Yellowstone R-Sunday
Big Porcupine Cr
Rosebud Cr
Lower Yellostone R
O'Fallon Cr
Missouri R (Lake Sakakawea)
Little Muddy Cr
Upper Little Missouri R
Boxelder Cr
Middle Little Missouri R
Beaver Cr
Lower Little Missouri R
Antelope Cr
Dry Fork Cheyenne R
Upper Cheyenne R
Lance Cr
Lightning Cr
Cheyenne R (Angostura Resevoir)
Beaver Cr
HatCr
Middle Cheyenne R-Spring
Rapid Cr
Middle Cheyenne R-Elk
Lower Cheyenne R
Cherry Cr
Upper Belle Fourche R
Lower Belle Fourche R
Redwater R
Missouri R (Painted Woods)
Missouri R (Upper Lake Oahe)
Apple Cr
Beaver Cr
Missouri R (Lower Lake Oahe)
Western Missouri Coteau
Knife R
Upper Heart R
Lower Heart R
Upper Cannonball R
Domestic
0.1,1
0.06
0.03
1.65
0.03
0.33
2.4 u
0.31
2.23
0.18
0.19
0.04
0.18
0.23
0.34
0
0
0
0
0
0.17
1.38
0.07
1.49
5.94
1.2
0.27 •
0.51
3.12
2.78
1.23
1.08
1.14
6.93
0.41
0.8
0.53
1.01
4.07
3.07
0.35
Industrial
0
0
0
0.14
0
0
0.96
0.01
4.2
0
0
0
0.05
0.01
0.21
0
0
0
0
0
0.07
0
0
0.39
1.69
0.22
0
0
0.09
1.06
0.16
4.13
0.1
0.11
0
0
0 -
0.02
0.11
0.07
0
Agriculture
3.16
10.48
6.76
254.44
8.69
8.59
411.82
6.17
8.94
3.16
13.65
2.27
2.49
1.22
1.49
7.13
5.25
6.52
11.63
9.23
3.93
6.24
12.91
35.52
2.59
1.43
1.97
0.77
19.01
94.02
7.26
7.77
10.06
9.93
1.15
19.08
3.46
3.02
1.38
7.57
0.82
210

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Northern Great Plains Aquatic Assessment
Table 6.2.1 Water use in million gallons per day for each watershed in the Northern Great Plains
Assessment Area.
Code
10130205
10130206
10130301
10130302
10130303
10130304
10130305
10130306
10140101
10140102
10140103
10140104
10140105
10140201
10140202
10140203
10140204
10150001
10150002
10150003
10150004
10150005
10150006
10150007
10160001
10160002
10160003
10160004
10160005
10160006
10160007
10160008
10160009
10160010
10160011
10170101
10170102
10180007
10180008
10180009
10180011
miftnni9
Name
Cedar Cr
Lower Cannonball R
North Fork Grand R
South Fork Grand R
Grand River
South Fork Moreau R
Upper Moreau R
Lower Moreau R
Missouri R (Ft Randall Reservoir)
BadR
Medicine Knoll Cr
Medicine Cr
Crow Cr
Upper White R
Middle White R
Little White R
Lower White R
Ponca Cr
Niobrara River Headwaters
Upper Niobrara R
Middle Niobrara R
Snake R
Keya Paha R
Lower Niobrara R
James R Headwaters
Pipestem Cr
Upper James R
ElmCr
MudCr
Middle James R
Eastern Missouri Coteau
Snake Cr
Turtle Cr
Northern Big Sioux Coteau
Lower James R
Missouri R (Lewis & Clark Lake)
Vemnillion R
Middle North Platte R-Casper -
Middle North Platte R (Glendo Res)
Middle North Platte R-Scotts Bluff
Lower Laramie R
Hnrce r.r
Domestic
0.29
0.21
1.71
0.09
0.22
0.07
0.08
0.32
3.58
0.61
0.15
0.16
0.23
2.18
0.21
0.51
0.78
0.41
0.6
2.98
1.17
0.08
0.46
0.64
0.64
0.2
5.25
0.72
0.29
1.99
0.12
0.48
0.53
0.52
4.41
4.93
3.25
7.89
1.4
8.53
1.09
"4*
Industrial
0
0
0.04
0.02
0
0
0
0
0.4
0.05
0
0
0
0.14
0
0
0.01
0.03
0.02
0.29
0.12
0
0.01
0.04
0.07
0
2.81
0
0
1.76
0
0.07
0
0
0.26
0.75
0.13
0.1
0.03
5.6
0
	 nm
Agriculture
1.10
0.85
0.99
0.57
0.89
0.33
0.78
0.6
29.45
1.44
1.64
0.65
2.11
18.36
2.63
6.48
2.59
2.59
17.69
266.66
53.34
63.28
16.39
127.51
0.55
1.96
17.17
1.40
0.58
13.16
0.82
1.64
2.92
1.49
7.02
111.42
17.84
91.89
60.40
630.21
109.12
	 71H9
                                   211

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 Chapter 6 - Water Usage
 Table 6.2.1 Water use in million gallons per day for each watershed in the Northern Great Plains
 Assessment Area.
 Code
Name
Domestic    Industrial    Agriculture
 10180014    Lower North Platte R
 10190018    Lower South Platte R
 10200101    Middle Platte R-Buffato
 10210001    Upper Middle .Loup R
 10210002    Dismal R
 10210003    Lower Middle Loup R
 10210004    South Loup R
 10210005    Mud Cr
 10210006    Upper North Loup R
 10210007    Lower North Loup R
 10210008    Calamus R
 10210009    Loup R
 10210010    CedarR
 10220001    Upper Elkhom R
                                 2.07
                                 3.33
                                 8.25
                                 0.39
                                 0.23
                                 1.3
                                 0.96
                                 0.93
                                 0.22
                                 0.91
                                 0.13
                                 2.89
                                 0.55
                                 3.71
              0.32
              0.48
              1.58
              0.03
              0
              0.14
              0.07
              0.21
              0
              0.09
              0
              0.32
              0.04
              1.91
 169.25
 175.28
1021.15
   8.86
  14.01
 228.24
 103.19
  83.73
  45.96
 163.21
   9.94
 150.47
  65.17
 193.23
212

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Northern Great Plains Aquatic Assessment
Table 6.2.2 Total
Assessment Area
Watershed Code
09010001
09010002
09010003
09010004
09010005
09020101
09020104
09020105
09020107
09020109
09020201
09020202
09020203
09020204
09020205
09020301
09020306
09020307
09020308
09020310
09020311
09020313
10010002
10030102
10030103
10030104
10030105
10030201
10030202
10030203
10030204
10030205
10040101
10040102
10040103
10040104
10040105
10040106
10040201
10040202
10040203
10040204
Water Use by Source
Ground Water
3.09
0.78
10.33
2.56
0.99
0.48
4.35
10.53
1.95
1.67
3.15
1.37
3.28
8.00
1.38
0.41
0.02
4.95
1.73
0.43
0.12
1.09
0.06
1.92
0.54
3.40
0.17
2.07
1.61
3.77
0.33
1.29
0.42
0.53
3.40
1.07
0.61
0.34
3.50
1.71
0.24
1.00
for each Watershed in
Surface Water
0.62
0.17
12.85
0.35
0.18
0.17
11.81
0.46
0.04
0.49
0.63
0.25
0.39
2.66
0.36
6.79
0.14
0.21
0.21
0.26
1.43
0.98
1.98
64.24
213.47
430.65
1.58
90.62
71.11
166.71
6.55
210.51
6.95
32.92
72.03
41.81
5.21
- .3.07
397.46
72.34
18.14
55.32
the Northern Great Plains
Total
3.71
0.95
23.18
2.91
1.17
0.65
16.16
10.99
1.99
2.16
3.78
1.62
3.67
10.66
1.74
7.20
0.16
5.16
1.94
0.69
1.55
2.07
2.04
66.16
214.01
434.05
1.75
92.69
72.72
170.48
6.88
211.80
7.37
33.45
75.43
42.88
5.82
3.41
400.96
74.05
18.38
56.32
                                   213

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 Chapter 6 - Water Usage
Table 6.2.2 (cont)
Assessment Area
Watershed Code
' 10040205
10050001
10050002
10050003
10050004
10050005
10050006
10050007
10050008
10050009
10050010
10050011
10050012
10050013
10050014
10050015
10050016
10060001
10060002
10060003
10060004
10060005
10060006
10060007
10070002
10070003
10070004
10070005
10070006
10070007
10070008
10080015
10080016
10090101
10090102
10090201
10090202
10090203
10090204
10090205
10090206
Total Water Use by Source for each Watershed in the Northern Great Plains
Ground Water
7.07
0.07
0.23
0.24
7.08
0.45
0.39
0.27
0.62
0.76
0.29
0.11
3.22
0.12
1.15
0.43
0.30
2.13
0.77
2.34
0.62
0.63
4.83
1.22
4.35
1.38
5.18
2.78
2.08
2.87
0.45
5.12
2.14
1.69
2.43
1.16
2.09
2.76
1.52
0.38
2.56
Surface Water
12.32
4.43
3.68
2.11
280.57
3.00
6.68
9.15
26.22
33.84
12.02
6.14
86.80
6.98
68.39
12.33
0.93
71.57
15.59
5.93
1.94
54.17
6.91
0.77
421.17
175.01
342.04
69.47
604.04
113.01
14.23
222.51.
175.01
556.71
39.75
70.89
135.19
.. 44.88
29.10
63.22
217.13
Total
19.39
4.50
3.91
2.35
287.65
3.45
7.07
9.42
26.84
34.60
12.31
6.25
92.02
7.10
69.54
12.76
1.23
73.70
16.36
8.27
2.56
54.80
11.74
1.99
425.52
176.39
347.22
72.25
606.12
115.88
14.68
227.63
177.15
558.40
42.18
72.05
137.28
47.64
30.62
63.60
219.69
214

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Northern Great Plains Aquatic Assessment
Table 6.2.2 (cont.)
Assessment Area
Watershed Code
10090207
10090208
10090209
10090210
10100001
10100002
10100003
10100004
10100005
10110101
10110102
10110201
10110202
10110203
10110204
10110205
10120101
10120102
1.0120103
10120104
10120105
10120106
10120107
10120108
10120109
10120110
10120111
10120112
10120113
10120201
10120202
10120203
10130101
10130102
10130103
10130104
10130105
10130106
10130201
10130202
10130203
10130204
Total Water Use
Ground Water
0.89
10.00
0.39
0.28
3.44
0.19
1.90
6.43
5.43
5.24
2.46
2.53
0.30
1.16
0.47
1.43
6.53
0.66
18.83
11.32
2.99
2.92
5.45
2.07
2.90
14.23
2.01
0.45
0.63
21.46
5.95
4.96
4.94
1.84
10.65
1.34
4.61
2.88
1.67
0.76
1.34
0.86
by Source for each Watershed
Surface Water
17.77
5.37
10.15
6.51
270.40
8.53
8.25
410.47
5.58
22.05
0.90
13.12
2.01
1.97
1.09
0.91
8.68
5.26
7.37
0.47
7.16
1.32
4.32
10.95
43.55
3.37
2.09
1.76
0.54
22.45
97.27
11.75
884.38
13.38
5.76
0.28
. 15.86
- .1.51
8.48
4.79
8.06
0.53
in the Northern Great Plains
Total
18.66
15.37
10.54
6.79
273.84
8.72
10.15
416.90
11.01
27.29
3.36
15.65
2.31
3.13
1.56
2.34
15.21
5.92
26.20
11.79
10.15
4.24
9.77
13.02
46.45
17.60
4.10
2.21
1.17
43.91
103.22
16.71
889.32
15.22
16.41
1.62
20.47
4.39
10.15
5.55
9.40
1.39
                                   215

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  Chapter 6 - Water Usage
Table 6.2.2 (cont.) Total Water Use by Source
Assessment Area
Watershed
10130205
10130206
10130301
10130302
10130303
10130304
10130305
10130306
10140101
10140102
10140103
10140104
10140105
10140201
10140202
10140203
10140204
10150001
10150002
10150003
10150004
10150005
10150006
10150007
10160001
10160002
10160003
10160004
10160005
10160006
10160007
10160008
10160009
10160010
10160011
10170101
10170102
10180007
10180008
10180009
10180011
Code Ground Water
0.76
0.59
0.71
0.33
0.68
0.20
0.28
0.66
6.99
2.17
1.75
0.28
1.50
10.13
0.86
7.47
2.64
1.25
12.21
249.08
48.41
1.83
14.02
118.02
1.12
1.99
21.66
2.63
0.35
12.01
1.02
1.18
2.57
1.41
6.81
101.30
18.98
15.04
12.98
163.76
16.40
for each Watershed
Surface Water
0.63
0.49
1.31
0.35
0.58
0.20
0.58
0.36
31.18
2.73
0.47
0.63
0.75
15.47
1.97
0.48
1.69
1.47
6.69
24.90
6.90
61.53
3.10
12.36
0.38
0.18
5.25
0.46
0.38
5.35
0.36
0.66
0.83
0.49
5.81
25.82
2.12
271.38
50.91
487.92
110.50
in the Northern Great Plains
Total
1.39
1.08
2.02
0.68
1.26
0.40
0.86
1.02
38.17
4.90
2.22
0.91
2.25
25.60
2.83
7.95
4.33
2.72
18.90
273.98
55.31
63.36
17.12
130.38
1.50
2.17
26.91
3.09
0.73
17.36
1.38
1.84
3.40
1.90
12.62
127.12
. 21.10
286.42
63.89
651.68
126.90
216

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                                                 Northern Great Plains Aquatic Assessment
 Table 6.2.2 (cont.) Total Water Use by Source for each Watershed in the Northern Great Plains
 Assessment Area
Watershed Code
10180012
10180014
10190007
10190018
10200101
10210001
10210002
10210003
10210004
10210005
10210006
10210007
10210008
10210009
10210010
10220001
Ground Water
30.20
70.67
0.20
152.64
596.81
8.63
14.06
80.42
100.10
81.37
17.92
51.01
9.46
145.97
62.46
195.23
Surface Water
41.60
103.01
4.88
734.80
456.63
3.69
0.21
150.83
6.07
4.28
28.30
116.28
0.72
14.71
4.13
15.56
Total
71.80
173.68
5.08
887.44
1053.44
12.32
14.27
231.25
106.17
85.65
46.22
167.29
10.18
160.68
66.59
210.79
   The total amount of water used in 1995 in
million gallons  per day by  watershed is
presented in Figure  6.2.1.   The Missouri
River near  Bismarck, the Middle  Platte-
Buffalo, the Lower South Platte, the North
Platte-Scottsbluff,  Clarks  Fork  of  the
Yellowstone and  the Upper Tongue  are
watersheds where more than 500 million
gallons per day are withdrawn. A little over a
billion gallons of water per day are used in
the Middle Platte-Buffalo watershed (much
the use is outside of the NGPAA).  Water
use for thermoelectric cooling and irrigation
drive these amounts. The Yellowstone, Milk
and Loup Rivers are also important areas for
total water use.  Total consumptive use of
water (Figure 6.2.2) is greatest in the  Platte
watershed and other irrigated  areas. Some
high total use areas such as the Missouri
River in central North Dakota fall out since it
is not consumptive.

   Examining the source of the water used
as shown in Figures 6.2.3 and 6.2.4 presents
some obvious regional differences. By far,
most of the groundwater use is in Nebraska
in the Platte, Niobrara and Loup watersheds.
Several watersheds have  withdrawals  of
more than 100 million gallons per day of
ground water.  In contrast, while very large
amounts of surface water are also used in
the North Platte basin, some areas where
little groundwater  is  used  show  large
amounts  of surface  water use.   These
include central North Dakota, mainly a result
of large thermoelectric cooling uses and the
Yellowstone, Clarks Fork of the Yellowstone,
the Milk and the Marais Rivers for irrigation.

   Irrigation  and   thermoelectric  cooling
overwhelm most other uses of water in the
Northern Great Plains. Figure 6.2.5 shows
the total water use for irrigation,  and the
map, with a few exceptions, is very similar to
the map of the total water use.  Irrigation is
done in the western and southern portions of
the Northern Great Plains, with surface water
supplying much of the irrigation water in the
west (along with the North Platte) and ground
water supplying the watersheds in Nebraska
                                                                                  217

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                                                                                          Total Water
                                                                                           Use, MGD
                                                                                               0-100
                                                                                               101 - 500
                                                                                               501 - 1000
                                                                                               > 1000
Figure 6.2.1 Total Water Use in 1995 in the Northern Great Plains

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                                                                                         Consumptive
                                                                                       Water Use, MGD
                                                                                            o • so
                                                                                            51 -100
                                                                                            101-250
                                                                                            >250
Figure 6.2.2 Total Consumptive Water Use in 1995 in the Northern Great Plains

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                                                                                            Surface Water
                                                                                             Use, MOD
                                                                                                 101 - 250
                                                                                                 251 - 500
                                                                                                 >500
Figure 6.2.3 Total Surface Water Use in 1995 in the Northern Great Plains

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                                                                                         Ground Water
                                                                                           Use, MOD
                                                                                              0-50
                                                                                              51-100
                                                                                              101 - 250
                                                                                              >250
Figure 6.2.4 Total Ground Water Use in 1995 in the Northern Great Plains

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                                                                                            Irrigation Water
                                                                                               Use, MGD

                                                                                                  0-50
                                                                                                  51-100
                                                                                                  101-500
                                                                                                  >500
Figure 6.2.5 Total Water Use for Irrigation in 1995 in the Northern Great Plains

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                                                Northern Great Plains Aquatic Assessment
 with irrigation water (see Figures 6.2.6 and
 6.2.7).  Sufficient rainfall in the north and
 east reduces the need for irrigation in those
 areas.  Figure 6.2.8 presents amounts of
 wateriest in irrigation, with again, the Platte,
 Loup and Yellowstone basins standing out.
 More than 200 million gallons of water per
 day are consumed in the Middle North Platte
 and Middle Platte watersheds. The map of
 total consumptive loss of water  looks very
 similar to the consumptive use map for
 irrigation water, indicating that this activity is
 the greatest  consumptive user of water.
 Figure 6.2.9 presents the largest  use of
 water for thermoelectric cooling,  with more
 than 500 million gallons per day  used in
 central North Dakota and the Lower South
 Platte. The North Platte near Casper also
 has  significant  uses   of  water  for
 thermoelectric cooling. In general, the vast
 majority of this water is returned to the river
 after use and very little is consumed.

   Other uses of water in the Northern Great
 Plains include public water supply,  mining
 and hydroelectric generation.  Figure 6.2.10
 shows where the greatest withdrawals for
 public water supply occur.  Not surprisingly,
 these match where  the largest  cities and
 towns are located. Only seven watersheds
 withdraw more than  10 million gallons per
 day for public supply and they are mainly on
 the margins of the NGPAA. Large portions
 of the NGPAA are dependent upon ground
 water for  domestic  supply, even  though
 these may not be large, they are significant
 For example, according to the North Dakota
 Department of Health, groundwater provides
 drinking water  for  60%  of  the   state's
 population (95% of all rural residents) and 47
 billion gallons are withdrawn annually from
 North  Dakota  aquifers   (North  Dakota
 Department of Health. 1994).   In South
 Dakota as well, more than  three-fourths of
the  population  uses  groundwater  for
domestic use and almost 50% of the 450
 million gallons of water used per day in South
 Dakota  is  groundwater  (South  Dakota
 Department of Environment and Natural
 Resources, 1996).

    Figures 6.2.11 and 6.2.12  show  the
 greatest withdrawals for ground water and
 surface water, respectively, for mining.  The
 large ground water withdrawals in Wyoming
 represent coal  mining  activities, while  the
 large surface water withdrawals represent
 sand and gravel operations in Nebraska and
 hard rock mining in the Black Hills.  Figure
 6.2.13  represents  the   water  use   for
 hydroelectric  facilities.   This  matches  the
 location of the largest dams on the Missouri
 River,  with  other important  hydroelectric
 facilities on the  North  Platte and  Platte
 Rivers.  An average of more than 10 billion
 gallons  per  day  of water  is  used  for
 hydropower generation  on the  mainstem
 dams  of the  Missouri  River  (with   the
 exception of Fort Peck, which is somewhat
 lower).

   Figure 6.2.14  presents the changes in
water use for agriculture between 1985 and
 1995. Large increases in agricultural water
 use have occurred in Loup, Platte, Tongue,
 Powder, Upper Yellowstone and Marais River
 basins  watersheds.    Decreases  have
occurred in much of the  central NGPAA,
especially in the Lower Belle Fourche  and
Middle Niobrara basins. Figure 6.2.15 shows
the changes in ground water use between
 1985 and 1995. The Middle Platte-Buffalo
and Lewis and Clark Lake show the greatest
increases in ground water use.  The Middle-
 Platte-Buffalo  had  by  far  the  greatest
increase with more than 233 million gallons
per day more of ground water use in 1995
than  in  1985.    Figure ~ 6.2.16  presents
changes in surface water use between 1985
and 1995. This map and the total water use
map (Figure 6.2.17) are similar to the change
in agricultural water use map, showing the
                                                                                 223

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                                                                                            Ground Water
                                                                                              Irrigation
                                                                                              Use, MGD

                                                                                                 0-50
                                                                                                 51-100
                                                                                                 101 - 250
                                                                                                 >250
Figure 6.2.6 Ground Water Irrigation Use in 1995 in the Northern Great Plains

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                                                                                             Surface Water
                                                                                              Irrigation
                                                                                              Use, MGD

                                                                                                 0-50
                                                                                                 51 -100
                                                                                                 101 - 250
                                                                                                 >250
Figure 6.2.7 Surface Water Use for Irrigation in 1995 in the Northern Great Plains

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                                                                                          Consumptive
                                                                                           Irrigation
                                                                                           Use, MGD
                                                                                               0-50
                                                                                               SI-100
                                                                                               101 .250
                                                                                               >250
Figure 6.2.8 Consumptive Irrigation Use in 1995 in the Northern Great Plains

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                                                                                          Thermoelectric
                                                                                         Water Use, MGD

                                                                                         Bill 0-25
                                                                                              26-500
                                                                                              >500
Figure 6.2.9 Thermoelectric Water Use in 1995 in the Northern Great Plains

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                                                                                            Public Water
                                                                                             Supply Use,
                                                                                                MGD
Figure 6.2.10 Water Use for Public Supply in 1995 in the Northern Great Plains

-------
                                                                                           Ground Water
                                                                                               Use far
                                                                                           Mining, MGD
                                                                                                 0,01 -3
                                                                                                 3.01 - 8
                                                                                                 >8
Figure 6.2.11 Ground Water Use for Mining in 1995 in the Northern Great Plains

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                                                                                                Surface Water
                                                                                                 •  Use for
                                                                                                Mining, MGD
                                                                                                     0.0 1 . 3
Figure 6.2.12 Surface Water Use for Mining in 1995 in the Northern Great Plains

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                                                                                          Hydroelectric Water
                                                                                              Use, MOD

                                                                                                0 - WOO
                                                                                                1001 - 5000
                                                                                                5001 - 10000
                                                                                                10001 - 36000
Figure 6.2.13 Water Use for Hydroelectric Facilities in 1995 in the Northern Great Plains

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                                                                                            Water Use Trends
                                                                                            for Agriculture,
                                                                                                 MGD

                                                                                                 -900 - -51
                                                                                                 •50 • -0.01
                                                                                                 0-50
                                                                                                 51-410
Figure 6.2.14 Changes in Agricultural Water Use between 1985 and 1995 in the Northern Great Plains

-------
                                                                                           Ground Water
                                                                                             Trends, MGD
Figure 6.2.15 Changes in Ground Water Use between 1985 and 1995 in the Northern Great Plains

-------
                                                                                          Surface Water
                                                                                         Use Trends, MGD
                                                                                              -100 - 0
                                                                                              0-50
                                                                                              50- 100
                                                                                              > 100
Figure 6.2.16 Changes in Surface Water Use between 1985 and 1995 in the Northern Great Plains

-------
                                                                                          .Total Water
                                                                                         Use Trends, MOD
                                                                                              <-50
                                                                                              •50-0
                                                                                              0-50
                                                                                              >50
Figure 6.2.17 Changes in Total Water Use (Ground and Surface) belween 1985 and 1995 in the Northern Great Plains

-------
 significance of irrigation and other agricultural
 uses to the region.  When agricultural use
 increases or decreases in a watershed, it is
 heavily reflected in the total usage.

 Water Uses On National Forest Lands

    Water use  on the National Grassland
 Units  primarily consists  of primarily  for
 livestock uses.  The Forest Service generally
 only applies for water rights for drilling wells
 and surface water for dams, both of these to
 serve mainly livestock.

    Some new  pressures are beginning to
 occur, however.   One example is  in the
 Sheyenne National  Grassland where the
 underlying ground water is being requested
 for domestic use due to contaminated ground
 water surrrounding it.

 Future Trends

    In some parts of the NGPAA, water use
 and demands are on the increase, mainly in
 areas where agriculture and growth of cities
 are occurring. In some areas, however, the
 opposite is happening, with agricultural and
 public water use declining.  Even in areas
 where it is declining; however, lower quality
 of sources may  drive the need  for hew
 supplies.
236

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 Evaluation  of  the  Assessment,   Data  Gaps  and
 Future Work
   The Northern Great Plains is a vast area
containing many different types of aquatic
resources  ranging  from  small  isolated
wetlands to large reservoirs and from small
streams to large rivers and vast aquifers.
This assessment only begins to reach into a
basic understanding of the condition of these
resources.  There  is both much more data
that could have been analyzed and many
data gaps that still need to be filled in the
knowledge of this region.

   Considering the large scale of this effort,
there was much more depth that could have
been covered.  Many more stations with
water quality and  quantity data could be
analyzed rather than one station from each
watershed.  However, greater detail  at this
scale was not possible in the time frame for
the assessment. It is hoped that information
presented at the scale in the report will lead
to further investigation  of those areas that
obviously need a closer look. The report also
suffered from a necessary reliance upon
305b report data.   There are numerous
problems with reporting this data across  a
region, as  was discussed in  Chapter  2,
including  differing  definitions of impaired,
differing uses of source or cause categories
and especially great variability in number of
miles assessed in any given watershed.  In
order to get a sense of the condition of water
quality across this region, however, there
was little alternative to this data.

   There are, however, large gaps in data for
this region. This probably results from both
the great distances  and limited funds for
sampling  and from, the perception that the
problems are not as great in this region as in
others. There is a  lack of water quality data
fora number of parameters for many stations
in the region  probably for the reasons
mentioned. The data used for certain water
quality parameters came mostly from the
Storet database and  errors were  found.
Storet is  undergoing  modernization  and
hopefully in the future this database will be
more reliable. However, sampling has to be
done in these areas, much of the problem
with Storet was lack of data.  There are
needs for more biological sampling to assess
biological and ecological condition of many
areas within the region.  Much work has been
done, but it is generally limited to a few
particular  areas.   That  is beginning to
change, however, as a number of agencies
begin to focus resources on the  Missouri
River and the larger basin. Other types of
monitoring that would  be valuable in the
region are fish tissue  monitoring,  possibly
greater groundwater sampling efforts and a
more regional analysis of riparian condition.

   Another area in the assessment that
could have used more development was the
functional analysis described in Section 2.7.
This assessment was only able to analyze six
fish species, comparing their physiological
needs with the measured conditions in the
watersheds they inhabit.   In future work,
many more  species used in the  analysis
(including species other than fish), as well as
more parameters  and  especially  more
stations.  As was  discovered,  the station
chosen to represent a  particular watershed
may not represent the best habitat for a
given species, while others in the watershed
may  be fine, giving  the impression of
problems that may not exist. Conversely, the
one station chosen may be the best habitat
for a given species and its condition in the
watershed  may  not  be  as  healthy as
presented.

   Future work  planned  for this  region
includes  several   large-scale  monitoring
efforts.     One  is  the  U.   S.   EPA's
                                                                                237

-------
 Environmental Monitoring and Assessment
 Program's (EMAP) Western Initiative which
 will focus on the Upper Missouri River Basin.
 Another is the U. S. EPA Region 8 Regional-
 EMAP project centered on  development of
' indices  of biological integrity   for  small
 streams in eastern  Montana and  riverine
 wetlands in North Dakota.   In addition, a
 number of federal and state agencies have
 put forth a proposal called the Missouri River
 Environmental Assessment Program to carry
 out monitoring and research studies for the
 mainstem of the Missouri River.   Many of
 these agencies have been  involved for the
 past  few years  in a  study of the  benthic
 fishes of the Missouri River from Montana to
 Missouri.   The work by  The  Nature
 Conservancy and Natural Heritage Programs
 on critical areas of biological significance will
 help focus on where the areas in the  best
 condition are.  All of these studies and others
 will begin to shed light on a system that has
 been neglected  in terms of environmental
 monitoring.
238

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 List  of Figures
 Figure 1.2.1   The Northern Great Plains Assessment Area



 Figure 1.3.1   Watersheds of the Northern Great Plains Assessment Area



 Figure 1.4.1   Ecological Regions of the Northern Great Plains Assessment Area



 Figure 2.2.1   Precipitation During 1990



 Figure 2.2.2   Precipitation During 1993



 Figure 2.2.3   Stream Density



 Figure 2.2.4   Amount of Reservoir Area in each Watershed



 Figure 2.2.5   Minimum Flows During the Period 1980 to 1995



 Figure 2.2.6   Mean Flows During the Period 1980 to 1995



 Figure 2.2.7   Maximum Flows During the Period 1980 to 1995



 Figure 2.3.1   Miles of Streams Not Fully Supporting Uses



 Figure 2.3.2   Miles of Streams Not Supporting Uses



 Figure 2.3.3   Percentage of Miles of Streams Not Fully Supporting Uses



 Figure 2.3.4   Percentage of Miles of Streams Not Supporting Uses



 Figure 2.3.5   Lake Acres Not Fully Supporting Uses



 Figure 2.3.6   Percentage of Lake Acres Not Fully Supporting Uses



 Figure 2.3.7   Median Levels of Fecal Conforms



 Figure 2.3.8   Maximum Levels of Fecal Coliforms



 Figure 2.3.9   Median Levels of Dissolved Solids



 Figure 2.3.10  Maximum Levels of Dissolved Solids



 Figure 2.3.11  Median Levels of Dissolved Oxygen



 Figure 2.3.12  Minimum  Levels of Dissolved Oxygen



 Figure 2.3.13  Median Levels of Total Solids



 Figure 2.3.14  Maximum Levels of Total Solids  *•



 Figure 2.3.15  Median BOD



Figure 2.3.16  Stream Miles Impacted by Ammonia
                                                                                        239

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  Figure 2.4.1    Pesticides in Ground Water


  Figure 2.6.1    Distribution of Endangered and Special Concern Fish Species by Watershed


  Figure 2.6.2,   Distribution of Endangered and Special Concern Fish Species by Ecoregion


  Figure 2.6.3    Pallid Sturgeon Occurrence


  Figure 2.6.4    Topeka Shiner Occurrence


  Figure 2.6.5    Sicklefm Chub Occurrence


  Figure 2.6.6    Sturgeon Chub Occurrence


  Figure 2.6.7    Lake Sturgeon Occurrence


  Figure 2.6.8    Pugnose Shiner Occurrence


 Figure 2.6.9    Greater Redhorse Occurrence


 Figure 2.7.1    Functional Analysis for Emerald Shiner


 Figure 2.7.2    Functional Analysis for Fathead Minnow


 Figure 2.7.3    Functional Analysis forLongnose Dace


 Figure 2.7.4    Functional Analysis for Yellow Perch


 Figure 2.7.5    Functional Analysis for Pallid Sturgeon


 Figure 2.7.6    Functional Analysis for Walleye
                                           «

 Figure 3.2.1    Concentration of Palustrine Wetlands in the Northern Great Plains


 Figure 3.2.2    Historical Wetlands Loss


 Figure 3.2.3   Recent Wetlands Changes


 Figure 3.2.4   Acres of Palustrine Wetlands


 Figure 3.2.5   Changes in Palustrine Wetlands


 Figure 3.3.1   Riverine Wetlands in the Northern Great Plains Assessment Area


 Figure 3.3.2   Changes in Riverine Wetlands


 Figure 3.3.3   Miles of Streams within each Watershed Impacted by Vegetation Removal or Streambank
               Alteration


 Figure 3.4.1   Intensive Human Influence


 Figure 3.4.2   Grassland Areas in the Northern Great Plains


 Figure 3.4.3   Coniferous Forest Areas in the Northern Great Plains
240

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Figure 5.2.1   Human Population in the Northern Great Plains


Figure 5.2.2   Changes in Human Population


Figure 5.3.1   Miles of Streams Impacted by Channelization


Figure 5.3.2   Miles of Streams Impacted by Hydrologic Modifications


Figure 5.3.3   Acres of Irrigated Land by Watershed


Figure 5.3.4   Acres of Irrigated Land by County


Figure 5.4.1   Major Point Source Dischargers


Figure 5.4.2   Total Point Source Dischargers


Figure 5.4.3   Miles of Streams Impacted by Municipal Point Sources


Figure 5.4.4   Location of Mines


Figure 5.4.5   Miles of Streams Impacted by Resource Extraction


Figure 5.4.6   Miles of Streams Impacted by Pathogens


Figure 5.4.7   Miles of Streams Impacted by Organic Enrichment and Low Dissolved Oxygen


Figure 5.4.8   Miles of Streams Impacted by Metals


Figure 5.4.9   Miles of Streams Impacted by Animal Feeding and Holding Operations


Figure 5.4.10  Miles of Streams Impacted by Agriculture
                                         *

Figure 5.4.11  Miles of Streams Impacted by Nutrients


Figure 5.4.12  Miles of Streams Impacted by Siltation


Figure 5.4.13  Miles of Streams Impacted by Salinity


Figure 5.4.14  Miles of Streams Impacted by Grazing


Figure 5.4.15  Miles of Streams Impacted by Irrigated Crop Production


Figure 5.4.16  Miles of Streams Impacted by Nonirrigated Crop Production


Figure 5.4.17  Miles of Streams Impacted by Thermal  Modifications


Figure 5.4.18  Harvested Cropland


Figure 5.4.19  Total Animal Units


Figure 5.4.20  Nitrogen Fertilizer Use, 1985


Figure 5.4.21  Nitrogen Fertilzer Sales, 1991


Figure 5.4.22  Potential Nitrogen Runoff
                                                                                         241

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  Figure 5.4.23  Potential Pesticide Runoff



  Figure 5.4.24  Atrazine Use



  Figure 5.4.25  2.4-D Use



  Figure 5.4.26  Sediment Delivery Potential



  Figure 5.4.27  Universal Soil Loss Equation Values for the Northern Great Plains



  Figure 5.4.28  Miles of Streams Impacted by Highway Construction/Maintenance



  Figure 6.2.1   Total Water Use



  Figure 6.2.2   Total Consumptive Use



  Figure 6.2.3   Total Ground Water Use



  Figure 6.2.4   Total Surface Water Use



  Figure 6.2.5   Total Water Use for Irrigation



 Figure 6.2.6   Surface Water Irrigation Use



 Figure 6.2.7   Ground Water Irrigation Use



 Figure 6.2.8   Consumptive Use of Water for Irrigation



 Figure 6.2.9   Thermoelectric Cooling Water Use



 Figure 6.2.10  Public Water Supply Use



 Figure 6.2.11  Ground Water Withdrawals for Mining



 Figure 6.2.12  Surface Water Withdrawals for Mining



 Figure 6.2.13  Hydroelectric Facility Water Use



 Figure 6.2.14  Changes in Agricultural Water Use



 Figure 6.2.15  Changes in Ground Water Use



 Figure 6.2.16  Changes in Surface Water Use



 Figure 6.2.17  Changes in Total Water Use
242

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 List of Tables
 Table 2.2.1     Watersheds of the Northern Great Plains Assessment Area

 Table 2.3.1     Beneficial Use Classifications for Surface Water

 Table 2.3.2     Trophic Status of Lakes in the Northern Great Plains States

 Table 2.4.1     Ground Water Classification System in Montana

 Table 2.4.2     Trends in Nitrogen Fertilizer Use

 Table 2.5.1     Fish Species in the Northern Great Plains

 Table 2.5.2     Aquatic Amphibian and Reptile Species of the Northern Great Plains

 Table 2.6.1     Threatened, Endangered and Special Concern Aquatic Species in the Northern Great Plains

 Table 2.6.2     Threatened, Endangered, and Special Concern Aquatic Species as listed by the Individual
               States

 Table 2.7.1     Species Used in the Netweaver Analysis with Guilds Represented

 Table 2.8.1    Aquatic Landscapes of Biological Significance

 Table 4.2.1     Other Statutes with Provisions for Protecting Aquatic Resources

 Table 5.4.1    Watersheds with the most Major NPDES Dischargers

Table 5.4.2    Watersheds with the most Total Number of Dischargers

Table 6.2.1    Total Water Use by Category

Table 6.2.2    Total Water Use by Source
                                                                                         243

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