Snake River Water Quality:
     A Discussion of Current Practices and Problems
Submitted as Partial Fulfillment of the Requirements of
             NNEMS  Grant No. U-913061-01-0
                       Zimri Hoore
                   November  27,  1989

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 50272-101
 REPORT DOCUMENTATION
         PAGE
                          1.REPORT NO.
                                                                             3. Recipient s Accession
 4. Title and Subtitle

 Snake River Water Quality: A Discussion of Current Practices and Problems
                                                                         5. Report Date

                                                                         Completed Fall 1989
     )f(S)
I Zimri Moore
                                                                         8. Performing Organization Rapt No.
 9. Performing Organization Name and Address
 University of Idaho
 Department of Civil Engineering
 Moscow, ID 83843
                                                                          10. Project/Taskwork Unit No.
                                                                          11. Contract(C) or Grant(G) No.

                                                                          (C)

                                                                          (G)
 12. Sponsoring Organization Name and Address
 U.S. Environmental Protection Agency
 Office of Cooperative Environmental Management
 499 South Capital Street, SW A-101-F6
 Washington, DC 20460	
                                                                          13. Type of Report & Period Covered
                                                                         Technical Report
                                                                          14.
 15. Supplementary Notes
 16. Abstract (Limit: 200 words)
 2517 - Snake River Water Quality: A Discussion of Current Practices and Problems

        This report is part of the National Network for Environmental Management Studies under
 the auspices of the Office of Cooperative Environmental Management of the U.S. Environmental
 Protection Agency. Water quality impacts of a single hydroelectric impoundment are relatively
 simple to predict however, consideration of cumulative impacts to fisheries, wildlife, and water
    iity resulting from combinations of additional impoundments must also be considered. By
 _ .structing a water quality model, the Snake River Risk Assessment team intends to provide the
 means to fully assess the environmental risks associated with potential individual or multiple
 hydroelectric developments on the river.
        Construction of the water quality model remains in the preliminary stages of information
 gathering and familiarization with water quality concerns in th study area. To facilitate this
 stage of model development, a data base of pertinent literature and water quality was reviewed
 and compiled. The following report has been prepared based on the review of the literature
 contained in the data base. It is intended to familiarize members of the Snake River Risk Assess-
 ment team and interested residents of the study area of existing conditions, water use practices,
 wastev/ater disposal methods,  and environmental factors that contribute to existing water quality
 conditions in the Snake River.
 17. Docuement Analysis a Docuement Dlscrlptore
 b. Idenlifiofs/Open-Endod Terms
 c. COSATI Field/Group
I^^Ava
lyallablility Statement
                                                        19. Security Class (This Report)
                                                           20. Security Class (This Page)
                                                                                    21. No. of Pages
                                                                                        22. Price
(See ANSI-Z39.18)
                                                                                      OPTIMAL FORM 272 (4-77)
                                                                                      (Formerly NTIS-35)
                                                                                      Department of Commerce

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                           DISCLAIMER                   .._

This report was furnished to the U.S. Environmental Protection
Agency by the  graduate  student identified on  the  cover  page,  under
a National  Network  for  Environmental Management Studies
fellowship.

The  contents are essentially  as  received from the author.  The
opinions,  findings,  and conclusions  expressed are those  of the  author
and  not necessarily  those of  the U.S.  Environmental Protection
Agency.   Mention,  if any, of company, process, or  product names is
not to be  considered as an endorsement  by  the U.S. Environmental
Protection Agency.

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                        Executive Summary







     The impetus for development  of  a  water quality model of the



Snake River  between  American Falls Reservoir and  Swan  Falls Dam



stems  from numerous applications  for  Federal  Energy  Regulatory



Commission  permits for  new hydroelectric  impoundments  in  this



portion  of  the  river.     Water   quality   impacts  of  a  single



impoundment are relatively simple to predict  however, consideration



of cumulative  impacts  to fisheries,  wildlife,  and water quality



resulting  from  combinations of  additional  impoundments  must also



be considered.  By constructing a water quality model,  the Snake



River Risk Assessment  team  intends to  provide the means to fully



assess the environmental risks associated with potential individual



or multiple hydroelectric developments on the river.







     Cconstruction  of  the  water  quality   model  remains  in  the



preliminary  stages of  information gathering and familiarization



with water quality concerns in the study  area.  To facilitate this



stage of model  development,  a data base  of pertinent literature and



water quality was reviewed  and compiled.  The following report has



been prepared based on the  review of the literature contained in



the data base.   It is intended to  familiarize members of the Snake



River Risk Assessment  team  and  interested  residents of  the study



area  of existing  conditions,   water  use   practices,  wastewater



disposal methods,  and  environmental  factors that  contribute  to



existing water quality conditions in the Snake River.

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                    Objectives of this Paper







1.   To inform residents of the study area and members of the study



     team modeling Snake River Water Quality of existing water use



     and waste disposal practices that degrade water quality in the



     study area and to describe the problems associated with these



     practices.







2.   To recognize losses and  or gains to different interest groups



     that would  be associated  with any  change in water  use and



     waste disposal practices.







3.   To describe the types of impacts that might be associated with



     further  agricultural  and  hydroelectric  development in the



     study area.

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                           Introduction







     Rivers are in a constant  state of  change, continually seeking



a new equilibrium  condition.  As  the  river bed and banks attempt



to adjust to varying  flow rates  and  sediment loads,  aquatic life



in the  riverine  environment  must adjust  species diversity and



population  to  compensate  for  changes  in  their  environment.



Alterations as small as a few  degree difference in temperature may



shift the algae community of a water body toward the dominance of



an entirely different  species.   Damming the river,  increasing or



decreasing sediment loads, increasing  nutrient loadings, and other



changes  have   a   substantially  larger   impact   on   the  river



environment.   The water quality characteristics  and  the river's



physical boundaries  attempt to  reach  a  new  equilibrium state in



response to changes in the river  system.  Biological components of



a  riverine  system  also  respond  to  these  changes  in  their



environment,  shifting populations  and  species  to  reach a new



equilibrium.







     Prior to settlement of the region by men of european descent



the Snake River was free flowing, virtually void  of  toxins, and



radioactivity  was  at   natural   background  levels.     Abundant



populations of salmonids  inhabited the relatively cool clean waters



of the study area and aquatic plant and algae populations along the



river were  less  abundant.   However,  in  contrast  to  pristine



conditions  in  most   other   water  bodies,   the   Snake  River's

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productivity was  naturally  high before significant anthropogenic



influences  (Parametrix, 1979).







     Permanent settlement of the region has greatly increased the



nutrient load to  the  river  system.   Before Public Law 92-500 was



implemented the river served as a convenient means of disposal for



various wastewaters.   In particular,  excess organic  matter and



inorganic  nutrients from untreated wastewaters,  fertilizers in



agriculturally applied irrigation return water,  and  runoff from



feedlots stimulated the river's productivity resulting  in a highly



eutrophic  system.   Oxygen depletions by respiring photosynthetic



plant populations alone were severe enough to cause fish kills in



American Falls Reservoir.  Organic sludge deposits and foul odors



from decaying  aquatic growths  were common throughout  the river



basin  (Federal  Water  Pollution Control  Administration (FWPCA),



1968).   Today most or all point source  pollutant discharges to the



river receive some  degree of treatment before disposal.  Despite



construction of wastewater treatment facilities and other efforts



to clean up the river  a significant pollution problem in the form



of excess nutrient loading or eutrophication is still present.







     Monitoring and regulation of point source polluters by the U.



S.  Environmental  Protection  Agency   (USEPA)  has  reduced  the



pollutant  load  in  the  river.    Improvements  in water  quality



resulting from USEPA actions are manifest in the relative absence



of  fish  kills   resulting   from  oxygen  depletion  by  respiring

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phytoplankton and Biochemical Oxygen Demand (BOD) (pers. comm. W.



Poole, 1989).  The degree to which eutrophication has been slowed



or  reversed  by  these efforts is difficult to  quantify since the



trophic  state of  a body  of water  is  largely  a  subjective or



qualitative parameter.  Some improvement in the trophic state has



occurred as  a result of decreased nutrient loads irrespective of



a measure of improvement.







     Though  current  nutrient  loadings  are partially attributable



to  point  sources,  treatment of point  sources  prior to discharge



substantially reduces current point source nutrient contributions



to the river. As a result the extremely high level of productivity



in  the  Snake River  is  primarily  a result of  non-  point sources



(Idaho Department of Health and Welfare Division of Environmental



Quality (IDHW-DEQ),  1989a and 1989b).







     Impoundments and flow  modifications create  additional water



quality problems.  The combination of a heavy nutrient  load and an



optimal environment for growth of plankton and aquatic macrophytes



in  warm,   slow  moving,  impounded  water  exacerbates  problems



associated with a high nutrient loading.  Aquatic populations are



subsequently altered in favor of  warm water  animal  species and



provide a  more  favorable  environment  for  plankton  and aquatic



macrophytes.  Eutrophic conditions are particularly conspicuous



during the growing season in  the  Twin  Falls  and  Thousand Springs

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reaches  of  the  Snake River,  the  area  on  which  this  report



concentrates.







Physical Description of the Study Area



     The study region is defined as the  river itself and the areas



immediately  adjacent  to it between American Falls  Reservoir and



Swan  Falls  Dam.    Its climate  is arid  to  semi-  arid with an



approximate annual rainfall of 10-15 inches and abundant sunlight.



Summers are warm with high temperatures commonly above 90 degrees



and  cool  winter  temperatures occasionally  dropping  below zero.



Because water is relatively  scarce  in  the  region, the  river is



repeatedly exploited for various uses as it flows across the desert



Snake  River  Plain.   Below  this plain lies  the largest  and most



productive  aquifer  in  the Northwest which  supplies most local



municipal water systems (FWPCA, 1968).







     Nearly the entire population of the region lives within a few



miles of the river.  Exceptions to this rule generally do not occur



unless irrigation water is supplied to areas more distant from the



river by canal or groundwater pumping.   Twin Falls and the Rupert-



Burley  area  are  the  two  major service  areas within the study



boundaries.   The  Pocatello  and  Idaho  Falls service areas  are



upstream of the study  area  boundary.   Because the heaviest water



use occurs in the Twin Falls area the most  significant impacts are



generally  found  in this  area  (pers.   comm. W.  Poole  and  M.



McMasters, 1989).

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                                                                             HENRYS LAKE
                                                                                f* Jt A *   ^*\
                                                            COLUMBIA  RIVER BASIN


                                                            RIVER MILE INDEX




                                                               SNAKE RIVER

                                                        Part IT Snake River above Weiser


                                                                           D-NEVADA-


                                                                           WYOMING
                            CASCADE 'DAM
  BULLY CREEK
"C-^V
  AGENCY
VALLEY DA
                (BOISE DIVERSION

                             'vARROWROCK
                             2 . / n*f\ u
                           •^-».
                           LUCKY PEAK \
                                                                                       Vr\
                                                                                               1

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     Economic  forces  play  a  major role  in producing  the  water



quality  conditions  in  the  river since  utilization  of  water



resources   is  the   primary   basis   for   the   local   economy.



Approximately 80 percent of the nations aguaculture production of



trout is found  in  the study area  between Twin Falls and Hagerman



(pers.  comm.   C.  M.  Falter).   Waste  from hatchery  production



receives some treatment in many of the larger hatchery facilities



but  most  of  the  smaller trout producers  provide limited  or no



treatment of wastes before they are discharged to the river.







     Irrigated agriculture is  the  largest water user in the region



and  consequently  has  the largest  impact on water quality.   The



magnitude  of  agricultural  diversions  is  demonstrated  by  the



presence of  a water  right  that  enables diversion of  the entire



Snake River for irrigation at Milner Dam (pers. comm. M. McMasters,



1989).  Feedlots and Dairies produce a tremendous amount of organic



nutrients from cattle  waste  that is often washed directly into the



Snake  River  via   irrigation  return  drains  and  small  streams.



Numerous food processing plants are found in the region to process



the abundant agricultural production made possible by irrigation.



Treated wastewater from these plants  is also discharged to the



river.







     Although the numerous hydroelectric facilities in this portion



of  the river  do  not  contribute  to  the  pollutant  load,  the



impoundment of water and other hydrologic modifications to stream

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flow compounds many  of the water quality problems  in  the river.







     The previously  mentioned activities are  almost exclusively



responsible  for  sustaining the economic activity of the region,



and in so doing they simultaneously create some of the most serious



pollution problems in  the basin.   Growth of  these  industries is



limited to  a large  extent by the cost  and  availability of water



resources in the area.   Because the region's economy  is so heavily



dominated by agriculture, expansion  of the economy is directly



linked  to   agricultural  expansion  which  is   controlled by  the



availability  of  water.   Population  is  similarly  tied  to  water



resources since the population cannot  substantially expand without



a sufficient economic base.  It is therefore very likely that the



area's populace and economy will continue to grow at a relatively



slow rate.







Water Quality Control Progress



     Since  1969  several  programs  and improvements  have  been



implemented  to  improve water  quality in the  Snake  River Basin.



Most notable have been the regulation of waste handling at cattle



feedlots and wastewater  disposal for  point   source discharges.



Other programs such  as the Rural Clean  Water  Program  attempt to



improve water quality,  largely by controlling sediment loads in



agricultural irrigation runoff.

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     Limited improvements in water  quality  have been realized by



these programs.  Turbidity and  sediment  loads have been reduced in



the Rock Creek watershed through the Rural Clean Water Program and



fish  kills  in the  mainstem  Snake River  appear  to  have  been



eliminated within the  study  area (Idaho Department  of  Health and



Welfare, Division of Environmental  Quality,  Water Quality Bureau



(IDHW-DEQ-WQB),  1989  and pers.  comm.  W.  Poole,  1989).   Though



improvements have  been made,  their cost effectiveness  has  been



questioned.  Abundant aquatic growths are still present, salmonid



populations have not substantially rebounded, sediment loads remain



high, and water  quality improvements  in tributaries such as Rock



Creek are quickly  lost when the creek reaches  the  Snake River.



Limited returns on past water quality protection  expenditures cause



many to question whether  benefits could be realized from further



expenditures (T. Klahr, 1989).
                                8

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                        Pollutant Sources







Fish Hatcheries



     Between Twin Falls and Hagerman lies the Thousand Springs area



where the Snake River Plain Aquifer discharges to the river.  With



the exception of elevated  nitrate  (NO3)  levels, these springs yield



water with negligible pollutants at a nearly  constant temperature,



ideal conditions for fish farming.   The abundance of  this high



quality water has enabled Idaho to lead the  nation in aquaculture



production of trout.   Of  the approximately 6000 to 7000 cfs that



flows from springs  in  the  area,  it is  estimated  that  80  to 90



percent or more of  this  flow is utilized  for trout  production.



Billingsley Creek  is a prime example  of  the intensity  of spring



flow utilization for fish farming.  In the  seven  miles from its



spring  source  to  the Snake  River,  Billingsley Creek  flows are



utilized   by  14  different   fish  hatcheries  (pers.   comm.  M.



McMasters).







     The total contribution of waste from hatcheries is difficult



to quantify because of the  range of size and  practices used in



producing the fish.   Many of the larger  producers collect and treat



fish wastes from raceways, diminishing the pollutant  load to the



river.  Most smaller producers raise the  fish  in  gravel or dirt



lined ditches.   Facilities of this type generally preclude removal



and treatment of wastes before discharge  to the river because of



difficulties  in  removing wastes  from   raceways  with  erodible





                                9

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bottoms.  Economic factors associated with providing cleaning and



treatment capabilities at small facilities with relatively few fish



also discourage pollutant removal.   As a result most fish wastes



from smaller fish farms and hatcheries reach the river undiluted.



Other  growers  raise  fish in  irrigation drainage  water  so  the



contribution from fish wastes and the contribution from agriculture



wastes become more difficult to distinguish.







     For these  reasons the concentration and  quantity  of wastes



discharged to the river from a given  hatchery is  widely varied.



Further variation is introduced by the range of sizes of fish farms



and hatcheries and by the species of fish produced.







     Pollutants  generated  at  fish  farms  and  hatcheries  are



principally of  an organic nature.  Most  significant is  the urea



and solid  waste products excreted  by  the fish.   In addition to



substantial  contributions of  organic nitrogen,  the Twin Falls



office of  IDHW-DEQ  is  concerned  that fish feeds and subsequently



fish wastes from  the  hatcheries  are higher  in phosphorus than is



necessary to meet the nutrient requirements of the fish.  Resulting



excess effluent  phosphorus is  suspected of  stimulating aquatic



growths  in the mainstern  Snake River  (pers.   comm.  M.  McMasters



1989).   Trophic  responses of the river  to  hatchery effluent are



probably greater than for similar volumes of other wastewaters due



to the large percentage of phosphorus found in the orthophosphate



form.     An  estimated  half  of   the  total  phosphorus  entering





                               10

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hatcheries as fish feed leaves the raceways in the orthophosphate



form (E. Brannen, 1989).







     Other  pollutants  associated with hatchery  effluents  are



primarily the BOD and suspended solid load discharged in effluent



from the raceways.   Suspended  solids  may be particularly high in



earth lined  raceways where the vigorous swimming  action of fish



entrains and suspends  organic  and inorganic sediments.   Effluent



limitations for hatcheries and fish farms have been developed for



USEPA but  do  not appear  to  have been  implemented by federal



agencies.    IDHW-DEQ  currently  regulates  hatchery  effluents,



principally on the basis of suspended solids and BOD loadings.







Dairies and Feedlots



     Animal  wastes   are   generally   accepted  as   significant



contributors of  nutrients  to  most watersheds in which  they are



found (Holt, Timmons,  and  Latterell,  1970;  Holt,  1971;  Robbins,



Howells, and Kriz,  1971   in  USEPA,   1976).    Particularly  heavy



loading occurs when  cattle are provided free  access  to  a stream



that flows  through  a  feedlot or stockyard  as  a water source.



Sediment and cattle waste products are washed into streams during



runoff events.  Cattle drinking from a  stream may defecate directly



in the  stream  or  carry nutrients and  wastes directly  into the



stream on their hooves and legs as they drink.
                                11

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     The problem is more pronounced when the animals are confined



rather than allowed to  range  over  a  large area.   Wastes from the



higher density  feedlots and stockyards are more concentrated and



therefore generally have a greater  impact on the receiving stream.



This effect is largely diminished in the Snake River because of the



relatively large volume of water  available for dilution compared



to its tributaries.  Other wastewaters are generated by wash water



from dairy operations and any other  periodic cleaning of animals



or facilities.







     Within  the study  area,  the  Snake  river  flows through  or



adjacent to portions  of Power,  Elaine, Cassia,  Minidoka, Jerome,



Gooding,  Twin  Falls,  Elmore,  and   Owyhee  Counties.     Cattle



populations in  these  nine counties totaled 562,000  head in 1988



and  increased  to  596,000  head as   of  January  1,   1989  (Idaho



Department of Agriculture, 1989).   Most of this cattle population



is  located  within  10 to  20  miles of the river or one  of its



tributaries and are found in high densities.







     Actual contributions  of  nutrients to the Snake River depend



on the proximity of the  cattle to the  river or its tributaries and



the  effectiveness  of  on  site  measures  designed  to  prevent



contamination of streams and agricultural drains by animal wastes.



Assuming values of  38.8  pounds of total phosphorus  and  126.7 pounds



of  total  nitrogen  per  year  per  animal  are  produced  in  cattle



wastes, these cattle populations will produce 75.5 million pounds





                                12

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of total nitrogen  and  23.1  million pounds of total phosphorus in



1989  (USEPA, 1976).







     Although  the  close proximity  of cattle populations  to the



river  and  its tributaries  tends to  favor  a high  percentage of



wastes  reaching  the river,  several other factors  attenuate the



transport of wastes.  Plant cover both retards the flow of cattle



waste  products to  streams and  consumes them  as  a  fertilizer.



Though   probably   much  smaller  in  magnitude   than   nutrient



contributions  via   surface  water,  nutrient  contributions  to



groundwater via deep percolation also reduce the  direct  flow of



nutrients to receiving streams.







     In  addition  to  nutrient contributions,  the  BOD,  ammonia,



bacteria,  and pathogens contained in  cattle  wastes  are  also



significant water  quality concerns.  Cattle  produce much greater



volumes of  waste  with a higher  BOD,  approximately 6.4  times the



equivalent BOD of human  waste.   Assuming this ratio to  be true a



stockyard  containing  2000  head   of  cattle  would  be  roughly



equivalent to a city of 13,000 people discharging untreated sewage,



with respect to the BOD  (FWPCA,  1968).







     Fecal matter from cattle contains pathogens that also afflict



humans.  Most pathogens die  off relatively quickly when exposed to



an environment other than  their original host.    However,  high



densities of cattle tend  to accumulate mud and fecal matter as much





                               13

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as  several  feet deep.   In  the warm moist  environment provided



within  accumulations  of  mud  and manure,  pathogens die off slowly



and may even multiply.  Thus, when a  runoff event  occurs or wastes



are illegally discharged to streams,  large numbers of pathogens in



high concentrations are introduced into the stream.  Summer stream



temperatures  are warm  and  provide  a favorable  environment for



pathogens and other coliform bacteria. Attrition  rates are slowed



and bacteria counts may  increase further  in the river under these



conditions.  Resulting coliform bacteria  counts in the Snake River



are very high and recreational uses have been impaired  as a result.



(FWPCA, 1968).







     The  USEPA  has  established  regulations  for waste  disposal



practices   at   stockyards  and   feedlots.     Essentially  these



regulations prohibit the discharge of animal wastes to streams and



water  bodies  except  during particularly  large  runoff  events.



Accidental or illegal discharges of these wastes persist even with



these regulations (pers. comm. M. McMasters, 1989).







Irrigated Agriculture



     Non-point   agricultural  sources   contribute  the  largest



pollutant load  in  the Upper  and Middle  Snake  River  Basin (Tetra



Tech, 1976 and IDHW-DEQ,  1989a and 1989b).  Irrigation tail-waters



carry pesticides,  nutrient rich fertilizers,  and heavy sediment



loads to the river.   To date  little concern has been placed on the



pesticide loading of receiving streams.   The mainstem of the Snake





                                14

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River in particular has been neglected with respect to monitoring



for pesticides.   Limited  data  is available in the USEPA's STORET



database system and from monitoring programs such as the Rock Creek



Rural Clean  Water Program (RCWP), but  is  generally  sporadic and



available at only few sites.  Still less documentation appears to



be available on  the  impacts  of pesticide loading on aquatic life



in the river.







     Sediment loading to the mainstem of the river  also appears to



have  received  little  attention,  though  more  than  pesticide



loadings.  Soil  erosion  control programs have been instituted by



the Soil  Conservation  Service  and other agencies  in  many of the



Snake River's tributaries.  A wealth of information on soil loss,



erosion control,  and the effectiveness of Best  Management Practices



(BMPs) has been collected as part of  the Rock  Creek RCWP.  Limited



information on sediment loads and turbidity in the  Snake River can



be found in USEPA's STORET data base.







     Runoff from individual fields, especially those irrigated by



furrow  irrigation,   carry sediment  into  drainage canals  which



eventually drain into the river.  Most of the smaller canals that



flow over  the  precipitous canyon  wall percolate  through  talus



debris piles formed  from rock  spalling off canyon walls.   As it



percolates through this debris pile it drops much of its sediment



load.   Accumulated sediment and rock  debris tend to remove many of



the other pollutants associated with irrigation wastewaters in a





                                15

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fashion similar to wastewater treatment by land treatment systems.



Irrigation drainage entering the river without the benefit of this



pollutant removal system has higher sediment loads, higher nutrient



concentrations,   and   higher  pesticide  concentrations.     The



effectiveness  of  the  talus slopes is evidenced by  comparison of



typical irrigation drainage with the Perrine Coulee hydroelectric



facility's discharge to the  Snake  River.   Irrigation tail-waters



on  the  canyon  wall  are  conveyed  through  a  penstock  to  a



hydroelectric  turbine, bypassing the  talus  slope  and discharging



the wastewater directly to the river,  creating the sediment laden



pollutant plume in the river.







     Many  of  the cultural  practices  used in  crop  production



contribute to the sediment load.  Low  till methods of crop culture



have  been  found  to  be one  of the best  methods of  controlling



erosion and soil loss (pers. comm. M.  McMasters and IDHW-DEQ-WQB,



1989) .  Though some farmers  have  incorporated  low till and other



Best  Management  Practices  (BMPs)  as  part  of  their  cultural



practices,  implementation of BMPs is not ubiquitous in the region.



Soil losses by irrigation  runoff are often manifest by severe soil



losses from lands operated with little regard to soil erosion and



accumulations  of  soil  on  lands  operated  by  erosion-conscious



farmers (D. Carter, 1976).







     Nutrient contributions from irrigation return flows are also



substantial.   Nutritive  requirements  for terrestrial  plant life





                                16

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are  practically  identical to  those  for aquatic plant  life with



respect  to  substance or  compound.   Thus nutrients  from decayed



terrestrial  plant  matter and  fertilizer  applications  carried in



irrigation return  flows stimulate the production of aquatic plant



life  in  the Snake River.   Generally the principal  nutrients of



concern  in an aquatic system are nitrogen and phosphorus.  Though



nitrogen requirements are much larger, it is usually available in



abundant  quantities,  while phosphorus  is relatively  scarce and



usually limits the productivity of aquatic systems.  Both of these



nutrients are found in agriculturally applied fertilizers.







     Research  on  agricultural return  flows in  the  study area



indicate  that phosphorus  is  removed from  irrigation water by



applying it to crop lands  (approximately  a 70 % reduction  in P04-



P).  Thus, with  respect  to phosphorous,  the application of Snake



River  water irrigated  lands   has  a  beneficial  impact  on water



quality  (D.  Carter,  J.  Bondurant,  and  C.  Robbins,  1970  and D.



Carter, M. Brown, C.  Robbins,  and J. Bondurant,  1974).







     Significant losses of nitrogen occur to  both deep percolation



and surface  runoff.   The most extreme  contributions  of nutrient



loss to groundwater and receiving streams occurs when fertilizers



are applied directly to irrigation water for subsequent application



to crops.  Studies of irrigation plots in the Boise Valley showed



a net  loss  of nitrogen to  irrigated crop land but  influent and



effluent nitrogen  concentrations  from the tract were essentially





                                17

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the  same.   These  results combined with  high nitrate  levels  in



groundwater  underlying  the  study  area  suggest  that  greater



efficiencies  in  water  application  would  also  yield  greater



efficiency  in  fertilizer applications  (D.  Naylor and  J.  Busch,



1973).  Elevated nitrate levels in the study region are generally



thought  to  be  caused  by  similar mechanisms  (pers.  comm.  M.



McMasters, 1989).







Other Pollutant Sources



     Three other pollutant  sources  are  worthy of mention,  either



out of public concern or to explain the interaction of pollutants



that  enter the  Snake  River outside  the study  area.   The  most



obvious of these is  the  pollutant contribution from the numerous



municipal and industrial point sources that discharge to the river.



Most point  source  discharges  in the region are  domestic  or food



processing  wastes  and are  relatively  void  of  toxic  materials,



although  a wide range  of  constituents may  be  present.    Major



exceptions  are  the phosphate processing  plants upstream  of the



study  area  which  discharge  wastewaters  with  a  low  organic



component.   Before USEPA  implemented effluent  standards,  these



wastes were discharged to the river untreated.   At times the BOD



and nutrient contribution  from point sources was a serious problem.



Today they constitute a  small  portion of  the total waste  load



relative to non-point sources (IDHW-DEQ,  1989a and 1989b).  Typical



secondary effluents have  total  phosphorus  concentrations  of 3  to



11  mg/1,  15  to 60  mg/1 total nitrogen, and 30  mg/1 or  less





                                18

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suspended solids and BOD  (Benefield and  Randal,  1980  and Metcalf



and  Eddy  Inc.,   1979).    The  favorable  economics  and number  of



opportunities   available   for  controlling   non-point   source



contributions compared to the diminishing returns associated with



advanced treatment of point source discharges strongly favors non-



point source controls.  As a  result,  implementation of non-point



source controls has been  given a higher  priority than additional



point source controls.   Pollutant contributions from municipal and



industrial  sources  are  probably  not  negligible,  but  are  not



discussed further  in this paper because  of  their lack of ability



to effect significant water quality improvements.







     Radionuclide contamination of the Snake River may be possible



by transmission of radioactive material via the Snake River Plain



Aquifer from disposal  sites  at the  Idaho National  Engineering



Laboratory  (INEL).   Results  of limited  monitoring of the Snake



River for radionuclides is available in USEPA's STORET data base.



The U. S. Geological also has information available in open file



reports of groundwater sampling in the vicinity of the INEL.







     It is highly unlikely that any radionuclide contamination from



the INEL  would  have  reached the Snake River  since  the estimated



travel time  through the aquifer to discharge points along the river



is in  excess of  100  years.   The  INEL  itself  has  only been  in



existence approximately half as many years (U.  S.  Department of the
                                19

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Interior, Federal Water Quality Administration, Northwest Region,



1970).







     Radionuclides could theoretically reach the river via surface



drainage  of  groundwater irrigated  sites  closer to  the  INEL.



Transport of radionuclides to the river in this manner is unlikely



because of the numerous hydraulic connections that  must be present.



If such contamination were occurring,  the severity would likely be



very small.







     In  1970  the Northwest  Region  of the  Federal Water Quality



Administration recommended the  removal of  existing buried wastes



and the elimination of disposal wells discharging to  the aquifer.



At that time  evidence had yet to be presented substantiating any



movement of pollutants beyond the INEL boundary after approximately



20 years of operation.  Since then action has been  taken to monitor



and prevent any  further degradation of the aquifer  or potential



spread of the radioactive plume (U.  S.  Department of the Interior,



Federal Water Quality Administration, 1970).







     The last pollutant  sources of importance in the study area are



the  phosphorus  mines  and  phosphorus  rich  rock formations  in



Southeastern Idaho.   Waters from the Portneuf River, Henry's Fork,



Blackfoot River and other tributaries accumulate heavy phosphorus



loads  as  they  travel  through  the  phosphorus  rich  geologic



formations of their watersheds.   Before anthropogenic  sources of





                                20

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phosphorus entered the Snake River  the  naturally  high phosphorus



concentrations in these streams was probably  responsible  for the



historically high  productivity of  the  river.  Today phosphorus



mining  operations  and phosphorous ore  treatment  plants  have



increased  the  phosphorus  load to  American  Falls Reservoir  and



downstream  reaches  of  the  Snake  River  above  natural  levels.



Phosphorus loading in American Falls Reservoir is  large enough to



cause the reservoir's productivity to be nitrogen limited at times



(pers. comm. C. M. Falter,  1989).   Phosphorus contributions from



this area are one of the most significant factors  responsible for



producing the characteristic high productivity, algae blooms, and



aquatic growths found in the Snake River.
                               21

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              River Impoundment and Water Management







     Water  quality impacts  in the Snake River  are  not  solely



attributable  to  the abundance of  nutrients and other pollutants.



Water  impoundments and river water management practices greatly



influence the physical  characteristics  of the river.  Disruption



of the river's natural  flow regime and seasonal cycles of  flow rate



and water  temperature  subsequently  alter  perennial  and seasonal



communities of plant and animal life in the river.







River Impoundments



     Impoundments  along the  Snake  River differ  from most other



impoundments  and reservoirs  in that they are  nearly all  single



purpose projects.  Though some secondary benefits may  be associated



with  a project,  they   are  generally subordinate and of  little



concern compared to the primary purpose of the  impoundment.







     American Falls Reservoir serves as the primary water storage



facility in the study area with a storage capacity of 1.7 million



acre feet.   C. J. Strike Reservoir has the next largest reservoir



volume  within   the study   area   at  0.25  million   acre  feet.



Groundwater, tributaries, and reservoirs on tributaries also supply



water, but American Falls reservoir supplies the bulk  of irrigation



water demands in the region.   Its  upstream location as well as its



volume relative to other water storage facilities both contribute



to  its dominant  role   in  the regions  irrigation water supply.





                                22

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Limited flood control and recreational benefits are associated with



the  reservoir since its operation  is highly  biased  towards  its



primary purpose of storing irrigation water.







     Excluding  C.  J.  Strike  and American  Falls Reservoirs,  the



impoundments  that  constitute the great  majority of  Snake River



impoundments are "run-of-the-river" dams.  Typically this type of



dam  has  a  short hydraulic  detention time and limited  storage



capacity.  Most of these dams simply serve to raise the elevation



head of  the  river,  either for hydroelectric  power  generation or



irrigation diversions.   Reservoir volumes  associated with these



dams are usually  relatively  small and are  more  a side effect of



the  impoundment  than  a specific design  objective.   Lake Walcott



and Milner Pool are typical  examples of  impoundments designed to



provide  elevation head  for  water  diversion  rather  than water



storage.







     Upper   and   Lower  Salmon   Falls   Dams  are   examples   of



hydroelectric dams on the Snake River.  The  bulk of the dams found



on the mainstem of the Snake River were constructed primarily for



power production and have few if  any  secondary benefits associate



d with the impoundment.  Idaho Power is responsible for operation



of many of these dams.  Control is exercised either indirectly in



cooperation with private  and  public agencies selling hydroelectric



power or directly by ownership of many of the dams.   In the case



of  hydroelectric  dams,   the  impoundments  serve  to  raise  the





                               23

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hydraulic head  to the hydroelectric  turbines  thereby increasing



power  generation.  Operation  of these  dams  is directed towards



maximizing hydroelectric power generation.







Water Management Practices



     American Falls Reservoir was constructed by the U. S. Bureau



of Reclamation  and began storing  irrigation water in  1926.   To



assure annual filling of this reservoir all other uses or benefits



that could be gained  from operation of this  dam are subordinated



to the dams primary purpose of storing water for irrigation.  Flood



control storage in American  Falls Reservoir is  an explicit example



of this subordination.







     Operating  levels in most  reservoirs maintain  a seasonally



varying  flood  control  storage volume  in  the reservoir.    In



contrast, American Falls Reservoir generally contains a significant



volume of water at the onset of  the flood  season and must be drawn



down to provide the required flood  control storage capacity.  This



occurs in only the wettest of years.   If spring runoff volumes are



not flood threatening, flows  in  excess of that necessary to top off



the reservoir are allowed to spill  (pers.  comm. M.  Beus, 1989).







     In most years water is stored in American Falls Reservoir at



a maximum rate  from   the end  of  one  irrigation  season to  the



beginning of the next. Resulting stream flows  are low during most



of this filling season.  An  informal minimum  release of  350 cfs is





                                24

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observed.    Actual  release  rates  are  based on  spring  runoff



predictions  and  the 350 cfs minimum  rarely  determines reservoir



releases.   Thus,  releases  are low through  most of  the  filling



season  except  possibly during the  spring  when a portion  of the



annual  spring  runoff may be spilled  from  the reservoir.   Spills



are infrequent and have  not  occurred  since 1986.   Throughout the



irrigation  season,  releases are  made  according  to  irrigation



demands.  Water storage is usually in excess of irrigation demands.



Typically 30 percent of the operating  storage  capacity of American



Falls  Reservoir  remains in  the  reservoir   at  the  end  of  the



irrigation season  (pers. comm.  M. Beus, 1989).







     Water  application  in  excess  of  crop  requirements  also



contributes to water quality degradation.  Under Idaho water law,



an owner of a water right generally must exercise the full quantity



of his water right  to prevent loss or reduction of his allotment.



To avoid potential decreases in  their water right apportionment,



many farmers will apply their full apportionment regardless of crop



water  requirements.    Water  markets  have   been  instituted  to



alleviate  this problem but  their  use and availability has been



limited  (Whittlesey,  Hamilton, and Halverson, 1986).   Applying



water in excess of crop requirements is sometimes necessary to meet



soil leaching requirements,  however in most cases within the study



area it  simply results  in larger  volumes  of  water lost  to deep



percolation and surface runoff.
                                25

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     Sediment loads have been shown to increase dramatically with



runoff flow rates from crop land (D. Carter, 1976 and pers. comm.



F. Watts  1979).   Larger flow rates  increase  the availability of



the sediment carrying medium and increase furrow, ditch, and canal



water  velocities.    Both  of these  effects  of increased water



application tend to exacerbate soil erosion losses.







     Water  is  also wasted  or  lost by percolation  through canal



bottoms as it travels from the point of diversion to its point of



application.  Examples of  the quantities of water loss and waste



are displayed  in Table 1  (pg.  27) .   Less  than  two  acre  feet of



water  per  acre   is   necessary to  meet   the  consumptive  use



requirements of most crops  cultured in the region.  As much  as 18.4



acre feet of water  per acre of  irrigated land is diverted by the



Lowder Slough Irrigation District.   This is more than nine times



the probable crop water requirement.  An estimated 50,000 to 60,000



additional acres could be  irrigated  in the Twin Falls area alone



through water conservation and better management practices (pers.



comm.  M.  McMasters, 1989).
                                26

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Table 1.  Selected Diversions During 19S2 Irrigation  Year from Snake River
Nar.e
Total
Diverted
(acre-feet )
Area
Irrigated
(acres )
Ac-ft/ac
Diverted
Canals Betveen Irvin and Lorenzo:
Progressive Irr. Dist.
Farmers Friend
Enterprise
Butler Island
Harrison
Rudy Irr. Co.
Lowder Slough
Burgess
Clark & Edwards
East LaBelle
Rigby and Rigby Lateral
Island
W. LaBelle & Long Island
Parks & Levisville
North Rigby
Sunnydell
Lenrobt
Reid
Texas & Liberty
TOTAL
Canals Between Lorenzo and
Butte & Market Lake •
Great Western & Porter
Idaho
Snake River Valley
Reservation
Blackfoot
New Lava Side
Peoples
Aberdeen
Corbett
Riverside
Danskin
Watson
195,500 (a)
116,000
53,300
12,300
146,600
90,000
18,400
291,400
26,100
36,300
56,800
54,500
141,100
106,300
18,500
55,900
47,000
47,100
68,800
1,630,908
Blackfoot:
67,900
212,300
287,600 (a)
177,900
65,000 (a)
102,600
32,200
98,600
283,100
43,100
32,900
54,300
31,800
33,000
10,500
5,200
1,100 '
13,000
5,000
1,000
22,000
1,940
3,000
4,000
5,500
10,500
8,500
1,400
3,780
3,100
5,500
10,000
151,260

20,000
30,220
35,850
20,790
54,770
15,000
6,000
20,000
63,000
6,000
5,000
8,000
3,000
5.9
11.0
11.2
11.2
11.3
1S.O
18.4
13.2
13.5
12.3
14.2
9.9
13.4
12.5
13.2
14.8
15.2
8.6
6.9
10.7

3.4
7.0
8.0
8.6
1.2
6.8
5.4
4.9
4.4
7.2
6.6
6.8
10.6
     TOTAL                   1,589,480       302,400     5.3
(a) Not including additional water recieved from other sources

Source:  Carlson, 1982 in Whittlesey, N.,  Hamilton, J. ,

         and Halverson, P.   1986.
                                    27

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                             Impacts







Eutrophication



     Eutrophication of an aquatic system can be caused by a number



of factors that alter the aquatic environment in favor of increased



aquatic growths.  For the purpose of this report eutrophication is



defined as the artificially enhanced or  increased productivity of



an aquatic system.   Eutrophication  and subsequent  increases in



plant and  fish  production  may  be viewed as beneficial impacts in



some water bodies,  but it is most commonly viewed  as a negative



aspect of  nutrient additions to an aquatic environment.  Decaying



plant  life produces  foul  odors,  algae increase turbidity,  and



aquatic weeds  can  clog canals and water ways.   Fisheries  may be



impacted by  an increased  oxygen  demand from the larger mass of



decaying organic matter and fish populations tend to shift towards



warm water species  and away  from the  highly prized  salmonid game



fish.  When the trophic state reaches the levels found through most



of the  Snake River, the  excessive growths of aquatic  weeds and



turbid waters limit the aesthetic value  of the river.







     Increased  temperature  or decreased  sediment   load  with  a



corresponding increase  in  light penetration  could be responsible



for the  eutrophication of a  water body,  but the most common cause



is  an  increased  supply  of  a  population  limiting  nutritive



substance.    In a nutrient limited system the growth  of  aquatic



plants and algae is stimulated by the introduction  of nutrients.





                                28

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Increases   in  plant   and   algae   biomass   provide   increased



opportunities  for  aquatic  animal   life,   resulting  in  similar



increases in the biomass of aquatic  animal  communities.  Thus both



plant and animal productivity is stimulated by the introduction of



nutrients in an aquatic system.







     Limitation of  productivity in  the Snake River by substances



other than  nitrogen or phosphorus  is unlikely due to  the large



influx  of  sediments,  pollutants,  and dissolved  solids  to  the



system.   Carbon or micronutrient limitations would  appear to be



highly  improbable  in  a system receiving   such a  heavy  load of



sediments, dissolved solids, nutrients, organic matter, and trace



elements  from various  sources,  however light limitation  may be



possible as a result of high turbidity conditions in the river.







     To be  biologically available  for  cell growth,  nitrogen and



phosphorus must be present in inorganic forms. Phosphorus must be



present as soluble  inorganic orthophosphate while nitrogen may be



present as nitrate  (N03) , nitrite (N02) ammonia (NH3) , ammonium ion



(NH4) ,  or  gaseous  nitrogen  (N2) .    Ammonia appears  to  be  the



preferred  form of  nitrogen  for consumption by  most  organisms



(USEPA, 1978).   Assuming  the  Snake  River is limited  by either



nitrogen or phosphorus, nitrogen to phosphorus (N:P)  ratios were



calculated at different locations along the river in an attempt to



determine which of  the two is  the  limiting nutrient.    Based on



average inorganic  nitrogen and orthophosphate concentrations at





                                29

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several sites  in the study area, calculated  N:P  ratios strongly
suggest a phosphorus limited system (Table 2, pp.  30 & 31).

     Phosphate can only be  used  by  algae and aquatic macrophytes
in  the orthophosphate  form (PO4) .    Though  some organisms  have
developed  extra-cellular  enzymes  or  other  means  of  liberating
orthophosphate from organic matter,  most aquatic plants and algae
must rely on the availability of  inorganic orthophosphate in their
environment.  In a river environment,  available orthophosphate is
quickly assimilated  by  plant  life and converted  to tissue or is
adsorbed  onto   soil  particles,   forming  relatively  insoluble
complexes.    Death  of  an  organism  eventually  results   in  its
deposition on the bottom of a quiescent portion  of the river along
with other  phosphorus bound to  soil  particles.  The phosphorus
remains bound to soil particles and in organic matter until it is
chemically or biologically  liberated  under anaerobic conditions.
     Phosphorus contributions to American Falls Reservoir probably
constitute  the  bulk of  phosphorus  loading downstream  of  the
reservoir.  Lesser phosphorus loads are supplied by municipal and
industrial point  sources,  feedlots,  and ,  fish hatcheries.   The
availability of this phosphorus in the river may be controlled by
the anaerobic liberation of orthophosphate.
                                30

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                             Table 2
                  Nitrogen to Phosphorous Ratios
         at Selected Sampling Sites Along the Snake River
                                  Dissolved Inorganic
Snake River, mainstem

Below American Falls Res.
at State Fish Hatchery

Below Minidoka Dam

0.4 mile below
Swan Falls Dam
                            NO, + N03   NH3 + NH4    PO4
                               (mg/1)       (mg/1)     (mg/1)   N;P
0.60

0.205



1.127
0.03      0.023   27.4

0.025     0.029    7.9



0.023     0.029   39.7
Hatchery Effluents

Crystal Springs Discharge     2.357

Rim View Raceway              1.610
            0.027     0.030   79.5

            0.275     0.060   31.4
Tributaries

Billingsley Creek
  Below Tupper Grade Bridge   1.065

  Above Fisheries Development 1.110

  Below Fisheries Development 1.036
            0.122     0.066   18.0

            0.153     0.055   23.0

            0.130     .064    18.2
Rock Creek
  Above State Highway 93      1.874

  @ Ellis Fish Hatchery       3.250

  Near Mouth of Rock Crk.     0.111
            0.132     0.049   40.9

            	     0.016  203.1

                      .0298    3.8
Cedar Draw
  @ Rest Area W. of Filer

  Below Pole Line Road
1.18

.839

 31
0.125     0.041   31.8

	     0.101    8.3

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                         Table 2  (cont.)
                  Nitrogen to Phosphorous  Ratios
         at Selected Sampling Sites Along  the Snake  River
                                  Dissolved Inorganic
                            N02 + NO3   NH3 + NH4
                     PO,
Irrigation Drainage

Major Drain on E. Side
of Rock Creek

Q-Coulee @ Highway 30/93
near KIFI radio

Main Drain @ 400 S. Rd.

K-Coulee @ Golf Course
near mouth

Perrine Coulee @ Mouth

Perrine Coulee above
Highway 30

South Drain
settling pond @ check
(mg/1)





0.112



2.68

2.646


2.56

1.77



0.685



0.200
(mg/1)     (mg/1)   N;P





	     0.030    3.7



0.048     0.031   88.0

1.437     .043    95.0



0.238     0.041   68.2

	     0.063   28.1



	     .046    14.9



0.100     0.015   20.0
Source: USEPA STORET database retrieval 05/89

NOTE: Concentration values  are  based  on averages.   Variations in
the  number,  date, and  agency  collecting  samples  may  taint the
accuracy of some values.
                                32

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     Though application of river water to irrigated crop land has
been shown to reduce phosphorus concentrations found in irrigation
tailwaters returning to the river,  the phosphorus content of these
flows cannot be ignored.  Assuming  a phosphorus limited system and
negligible phosphorus  contributions downstream  of  American Falls
Reservoir, the  influx  of phosphorus  to  American  Falls Reservoir
probably  constitutes the  single  largest factor responsible for
eutrophication of the Snake River.

     Nitrogen contributions to the  Snake  River include nitrates in
spring flows, limited instances of  nitrogen  fixation by blue green
algae,  and ammonia  and nitrates  in  irrigation returns,  animal
wastes from feedlots and hatcheries,  and municipal and industrial
point  source  discharges.     Based  on  biologically  available
orthophosphate  concentrations  throughout  most  of  the  river,
abundant nitrogen is available to meet the nutritional requirements
for photosynthetic production.
Impoundments
     The continual flushing effect of rivers as they flow towards
the Pacific ocean is a very fortunate characteristic of the Snake
River.  If the  nutrient  loading,  sunlight,  and water temperature
conditions found  in  the  river were present  for a  lentic body of
water an extremely high trophic state would likely result.  A lotic

                                33

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environment  is  vital to water  quality maintenance in  the Snake



River for several reasons.   Besides continually aerating the water



as it assimilates  and washes  pollutants from the system, flowing



water maintains a well mixed water column and inhibits the growth



of algae and aquatic macrophytes.







     Dissolved oxygen is necessary for the survival of most forms



of aquatic life.  A continual  supply  of oxygen rich water from the



surface is  made possible by  the  mixing of river water.   In the



Snake River, mixing also inhibits the onset of anaerobic conditions



in sediments and water near the river bottom which can result in



severe internal phosphorous loading.







     Impounded  water  is  especially  susceptible  to  anaerobic



conditions because  it is more likely to stratify under quiescent



conditions.  Once stratified,  dissolved oxygen in the lower layers



is quickly depleted by respiring  organisms involved in the decay



of the  abundant  organic  matter  that settles out  of  the water



column.   Anaerobic  conditions liberate phosphorus  and release it



in  the  biologically  available  orthophosphate  form  from  the



sediments and decaying organic matter.







     Most  reaches  of  the  Snake River,  including many  of  the



impoundments, can be considered fully mixed or polymictic.  When



stratification does occur it is usually rather weak and easily de-



stabilized by wind or turbulent mixing of river currents.  When the





                                34

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orthophosphate is returned to the photic zone by destratification



and mixing,  it  is  again available for photosynthetic production.



As a result, such autochthonous phosphorus loading can continually



release phosphorus to a water body.







     A certain amount of orthophosphate liberation probably occurs



in  small  anaerobic  interstitial  voids  of  sediments  and  is



eventually released to the water  column.  Liberation of phosphorus



generally  occurs  on  a  much  greater  scale  under  stratified



conditions than would otherwise be possible in anaerobic sediment



voids.  River productivity may be repeatedly  stimulated by internal



phosphorus loading in the numerous river impoundments encountered



along the  river.   Milner Dam,  for example,  forms  a  shallow pool



with a relatively low detention time compared to most impoundments.



Ordinarily  it  would be difficult  to  stratify a water  body with



these characteristics, however  severe  algal  blooms have been noted



as a result of stratification in Milner Pool (J. Yearsley, 1989).







     Aeration capacities of impounded waters  are also substantially



reduced by  dams  and impoundments on the Snake River.   In a free



flowing river the turbulent mixing action between the high oxygen



content surface waters  and lower oxygen  content deeper waters of



the river tends to  provide a relatively  uniform supply of oxygen



throughout the water column.  Rapids and waterfalls are especially



important supplies of oxygen to the river.
                                35

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     Rapids and waterfalls are also ideal sites for hydroelectric



dams and  diversions since steeper gradients  provide  the greater



available drop  in elevation at these sites that  is required for



hydroelectric power production.  Hydroelectric diversion dams allow



some minimum flow to continue through the rapids or waterfall but



divert  a  substantial portion of  the  flow through  a  penstock to



turbines when flows are sufficient to  permit diversions.  The flow



passing  through  the  rapids  or  falls  is often   fully  aerated



(saturated oxygen levels) while that  flowing through the penstock



and  turbines  is  only  minimally  aerated  by  turbulence  in  the



tailwaters.







     Impoundment dams are installed at many falls or rapids sites



to  raise  the  elevation  head  on  the turbines.    The backwater



upstream of these  dams  is slowed and often becomes stratified under



these  relatively  stagnant flow  conditions.   Falls or rapids in



these areas are drowned by the elevated water surface upstream of



the dam and their  aeration capability  is lost.   Diversion dams have



a similar impact on the river but generally to lesser degree.







     Slowing or stagnation of flowing  waters shifts  the river away



from the free  flowing  lotic  environment  towards a lentic pool or



lake  condition.    Aquatic macrophytes  that  normally could  not



survive and propagate  in  swifter free  flowing waters  quickly



establish  large populations  in  the  nutrient  rich  slow  moving



waters.  Animal populations  are  similarly  affected  by the change





                               36

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in  environment  which tends  to favor warm  water and  other  less



desirable species.







     The  increase  in organic matter as a result of impoundments



and eutrophication in the Snake River results in larger masses of



decaying  matter  throughout river, particularly  in  the backwater



created  by  impoundments.    Tendencies  toward  stratification,



increased oxygen demands from decaying organic matter, and reduced



mixing  in  the   lentic  areas  of  impoundments  create  anaerobic



conditions  at  many  of the  dam  sites  along the  river.   Water



withdrawal  or   release   from  the  de-oxygenated  or  anaerobic



hypolimnetic portions of  the  pool may  cause low dissolved oxygen



conditions to persist  for many miles below  an impoundment before



oxygen levels recover.   Releases from American Falls Reservoir are



believed to be occasionally  low or void of  oxygen as a result of



such withdrawals,  (pers. comm. W. Poole, 1989).







     Sediment  carrying  capacities  are  decreased  upstream  of



impoundments.  As  the  turbulence of  river currents is dissipated



in  the slowing  moving  backwater of  impoundments,  the river's



ability to  entrain and suspend  material  is reduced or  lost and



suspended  matter  settles  out.   Typically  larger  and  denser



particles settle out first.   Conversely the sediment deficient



water  released   downstream of  a  dam   flows  faster,  entraining



sediment to correct the deficit.  The net result is deposition of
                                37

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suspended material  upstream of a dam  and scouring of  the river



bottom downstream of the dam.







     Temperatures tend  to  fluctuate over a  greater  annual range



due to the presence of  numerous  impoundments on the  Snake River.



The increase  in surface area provides  greater  opportunities for



radiation, absorption,  and  transfer to and  from the  river which



tends to  raise  summer river temperatures and lower  winter water



temperatures.   Maximum  water temperatures have been established



for impoundments along  the  river  by state and federal regulatory



agencies  to  protect salmonid fish  populations  which have  a low



tolerance for warm  water temperatures.   Temperature  effects are



often  cumulative.    Heat  absorbed  at one  site  may not  cause



temperatures to exceed  the  allowable temperature at  one site but



the  cumulative   effect  of  numerous  reservoirs   could  raise



temperatures beyond maximum levels in all  reservoirs beyond a some



downstream point.    A secondary  effect of  warmer water  is the



lowered dissolved oxygen carrying  capacity relative to cold water.







     Migratory fish  populations are impacted in numerous ways by



dams and  impoundments.   Besides presenting  a substantial if not



insurmountable obstacle  to  migration,  many  spawning  sites along



the river are destroyed  or  degraded by the  accumulations of silt



and other sediments that settle out in the quiescent backwater of



impoundments.  Warmer waters are  a  less suitable environment for
                                38

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this valuable fishery and the  lower  oxygen  content  of warm water



hinders respiration.
Water Management Impacts







     Water management impacts result  from  a  lack of conservation



of water resources.  The two primary contributions to these impacts



are irrigation diversions and uses on  crop  lands and filling rates



and methods in storage reservoirs.  In general the problems with



these practices is that they limit or  remove in-stream flows which



would otherwise be available for dilution of wastes.







     Operation  of  American  Falls Reservoir  limits  the  total



benefits that could be gained from the water that flows into it by



limiting releases.   In addition to diluting  wastes, larger releases



carry a larger total volume of dissolved oxygen  relative to a given



BOD loading.   Larger flows may also be  capable of dissolving larger



volumes  of  oxygen  due to the greater presence  of the  carrying



medium  (water)  as  they  flow through  rapids  or other  turbulent



reaches of the river.  Thus, during most of  the  filling season, the



ability of the river to assimilate wastes is lowered because of the



low release  rates.    In  contrast,  the assimilative capacity of



spilled spring runoff could be stored for later release.
                                39

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     Implementation of  this method of water  quality improvement



simply  requires  a  change  in the  operation  of  American  Falls



Reservoir and other reservoirs to allow slower  filling and greater



releases.    The  filling  and  release  rates   could  be  adjusted



depending on predicted spring runoff to assure an adequate volume



of water would be stored  to meet demands during  the  irrigation



season.







     Irrigation  efficiencies  are  low   in  the  study  area,  as



evidenced by Table  1.   In some cases as little as  20  percent or



less of the water diverted from the  stream is used to satisfy crop



consumptive use and evapotranspiration.  Water diversions should



be minimized so that  only as much water as is necessary to meet



leaching requirements, crop consumptive use, and conveyance losses



is  removed from  the  river.   Conveyance  losses  in canals  are



unavoidable unless canal liners are installed, but deep percolation



and surface runoff could be substantially reduced.







     Elimination  of  surface runoff and  reduction  in percolation



losses would  virtually eliminate  surface  flow contributions of



nutrients, sediment, pesticides,  bacteria, and BOD from feedlots



and irrigated  agriculture.   Pollutant loadings from contaminated



groundwater that reaches the river via spring flows would also be



substantially reduced.  The water saved could be left  in the stream



and  used  to  generate  power  and  increase  the  dilution  and



assimilative capacity of  the river  or used  for irrigation of





                               40

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additional  lands.   Water quality improvements  would  probably be



manifest  primarily as  lower  turbidities and  suspended  sediment



concentrations, diminished  oxygen deficits,  and reduced  nutrient



loadings.   Heavy  nutrient  loading  from other  less  controllable



sources  may  compensate  or  overshadow reductions  in  nutrient



loadings  from these sources.  Consequently, noticeable reductions



in aquatic  plants  and  algae blooms  may not occur.   Water quality



improvements made  possible by water  conservation  measures would



appear to be cost effective  irrespective  of benefits associated



with reductions in nutrient loadings.







     From a strictly economic viewpoint, the lower marginal value



of water  used for irrigation compared to the  marginal  value of



hydroelectric power renders much of the use of water for irrigation



as wasteful.    Where  water banks  have been  available   for  the



transfer of water rights and apportionments, Idaho Power has been



the primary buyer of excess irrigation water.  Water excesses are



left  in  stream  and  used  to  generate  electricity  as it passes



through the  numerous  dams operated by  Idaho Power.   Other power



producing facilities  on the Snake River also  benefit from these



purchases by  Idaho Power  (Whittlesey, Hamilton,  and Halverson,



1986).



     Several advantages arise  from in-stream use of water  for power



generation.    The  first  is  that  power  production  is a  non-



consumptive use of water allowing the water to remain in the river



for  the   dilution  and assimilation  of  wastes.    Many of  the





                               41

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detrimental aspects of water impoundments such as stratification,



sedimentation,  decreased  mixing, and  temperature increases  are



lessened with larger flows.  Finally,  the  net economic output of



the state of Idaho could be increased by using water  for the more



valuable power  production  over the lower  value  crop  irrigation.



Through  the use  of a  water  bank for  the  transfer of  excess



irrigation water to meet firm power demands Whittlesey, Hamilton,



and Halverson estimate  that even after  subordinating irrigation



demands  to  firm  power  hydroelectric  generation  agricultural



production would remain intact in all but the driest  years.  "The



program  analyzed  would  reduce average agricultural  income about



$2.50 per  acre  while the  value  of hydropower produced  would be



about ten times  this amount." (Whittlesey, Hamilton, and Halverson,



1989) .
                               42

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              Options for Water Quality Improvement







     Probably the  most  effective and least  expensive  methods of



improving  water quality  in  the Snake  River involve  methods of



limiting or  eliminating  the  pollutant  loading to the Snake River



or by  improving water use and  storage  efficiencies  that allow a



larger portion of the available water to be retained in the stream.



Implementation of these methods  could be instituted voluntarily as



part of a state or federal regulatory program for the region.







     Complications  from  second and  third  party impacts  would



undoubtedly  arise.   For  instance,  reductions in deep percolation



would likely reduce the  availability local groundwater relative to



the abundant groundwater resources  currently  available.  Purchases



of excess irrigation water by hydroelectric power producers would



require direct  compensation to  persons giving up surface water



rights and compensation of groundwater users who would indirectly



be impacted.







     Alterations in the filling method of American Fall and other



reservoirs involves a certain amount of risk since spring runoff



predictions  could  overestimate the  actual amount  of  runoff.



Releases may then be too great to assure filling of the reservoir.



Insufficient volumes  of stored  water  would  result  in  losses to



farmers.  Most of these losses in farm income could be limited or
                                43

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eliminated  with  crop  insurance,  perhaps  state  or  federally



sponsored in the area.







      Most of the following options for water quality improvement



have been  mentioned or alluded  to  in previous portions  of this



report.  The more significant options are enumerated below.
1.   Creation of  a  water bank  for  water transfers to  allow for



     increased water use efficiencies between competing water users



     in the region.







2.   Elimination or  reduction of pollutant laden irrigation surface



     runoff and deep percolation returns to the Snake River.







3.   Improvement  of  irrigation efficiencies  by  reducing  deep



     percolation and surface runoff  so  as to retain  greater flow



     rates in the Snake River.







4.   Alteration of  rule curves  and  reservoir operations in water



     storage facilities to  provide  greater volumes of  water for



     water quality enhancement and protection.







5.   Use of  fish feeds with a  minimal phosphorus content could



     limit stimulation of aquatic  plant and algae growth  in the



     Snake River by from phosphorous rich fish hatchery effluent.





                                44

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                           Bibliography
                         References Cited

Benefield,  L.  D.  and Randall,  C.  W.   1980.   Biological Process
   Design for Wastewater Treatment.  Prentice-Hall,  Inc.  Englewood
   Cliffs, NJ.  526 pp.

Brown, M. J., Carter, D. L.,  and Bondurant,  J. A.  1974.  Sediment
   in  Irrigation and  Drainage  Waters  and Sediment  Inputs  and
   Outputs  for Two  Large Tracts  in Southern Idaho.   Journal of
   Environmental Quality, Vol.  3, No.  4, 1974.  5 pp.

Carter, D. L., Bondurant, J. A., and Robbins, C. W.  1970.  Water
   Soluble  NO3-Nitrogen, PO4-Phosphorus,  and  Total  Salt Balances
   on a Large Irrigation Tract.   U. S. Department of Agriculture,
   Idaho Experiment Station.  Kimberly,  ID.  5 pp.

Federal Water Pollution Control Administration, Northwest Region.
   1968.  Water Quality Control  and Management: Snake River Basin.
   Portland OR.  72 pp.

Idaho Department of Agriculture, Idaho Crop and Livestock reporting
   Service.   1989.   Idaho  Agricultural  Statistics.   Boise,  ID.
   approx. 60 pp.

Idaho Department of Health and Welfare,  Division of Environmental
   Quality and Idaho Department of Fish and Game. 1989.  Southwest
   Basin Status Report.  Boise, ID.  9 pp.

	.  1989.   Upper Snake  River Basin Status Report.  Boise,
   ID.  9 pp.

Idaho Department of Health and Welfare, Division of Environmental
   Quality, Water Quality Bureau.   1989.   Rock Creek Rural Clean
   Water  Program,  Comprehensive Water Quality Monitoring Annual
   Report 1988.  Prepared by Clark, W. H.  Boise, ID.  316 pp.

Metcalf and Eddy Inc.   1979.   Wastewater Engineering: Treatment/
   Disposal/Reuse.   McGraw-Hill Inc.  San Francisco, CA.  920 pp.

Naylor, D.  V. and  Busch,  J.  R.    1973.   Effect  of Irrigation,
   Fertilization, and  Crop  Cultural Practices  on  Water Quality.
   Idaho Water Resources Research Institute, Moscow, ID.  approx.
   75 pp.

Pacific Northwest River Basins Commission, Hydrology and Hydraulics
   Committee.  1976,  River Mile Index: Snake River, Part II Snake
   River above Weiser.  Portland, OR.  49 pp.

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Parametrix Inc.   1979.   Nutrient Analysis of the Snake River and
   its Major Tributaries from Above Palisades Reservoir  in Wyoming
   to Weiser, Idaho—Rivermiles 941 to 351.  Bellevue,  WA.  approx.
   100 pp.

Tetra Tech, Inc.  1976.   Water Quality Assessment and Projections-
   Snake River, Idaho.   Lafayette  CA.  approx. 75 pp.

U.   S.   Department  of  the   Interior,   Federal   Water  Quality
   Administration,  Northwest  Region.   1970.   Examination of the
   Waste Treatment  and Disposal Operation at the National Reactor
   Test Station,  Idaho Falls,  Idaho.  Portland, OR.  approx.  120
   pp.

U. S.  Environmental Protection Agency.    1976.   The Influence of
   Land  Use  on  Stream  Nutrient  Levels.     Prepared  by   J.  M.
   Omernik.  USEPA  Office of Research and Development,  Corvallis,
   OR.   106 pp.  EPA-600/3-76-014

U. S.  Environmental Protection Agency.    1989.   STORET data base
   retrievals.    USEPA,  Region X.   Seattle, WA.

Whittlesey, N., Hamilton, J.,  and Halverson, P.  1986.  An Economic
   Study of the Potential for Water Markets  in  Idaho.  Idaho Water
   Resources Research Institute.   Moscow, ID.  136 pp.
                     Personal Communications
Beus, M.  November 28 and 30, 1989.  U. S. Bureau of Reclamation,
   Burley, ID.   Telephone conversations.

Brannen, E.  November 27, 1989.  Professor.  University of Idaho,
   College  of  Forestry  and  Wildlife  Resources,  Moscow,  ID.
   Telephone conversation.


Falter,  C.  M.    Fall,  1989  Professor.   University  of Idaho,
   College  of  Forestry  and  Wildlife  Resources,  Moscow,  ID.
   Lectures and personal or telephone conversations.

Klahr,  T.   November  17,  1989.   Idaho Department  of  Health and
   Welfare, Division  of  Environmental  Quality, Southwest Region,
   Boise, ID.  Telephone conversation.

McMasters, M.   August and  September,  1989.   Idaho Department of
   Health  and   Welfare,   Division  of   Environmental  Quality,
   Southcentral Region, Twin Falls,  ID.   Telephone conversations
   and meetings in Twin Falls.

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Poole,  W.   November  20,  1989.   Idaho Department of  Health and
   Welfare, Division  of Environmental Quality, Southeast Region,
   Pocatello, ID.  Telephone conversation.

Watts,  F.   Fall,  1989.   Professor.   University of Idaho, College
   of Engineering.  Moscow, ID.  Lectures.

Yearsley,  J.      May  and  August,  1989.    U. S.  Environmental
   Protection  Agency,  Region  10.    Seattle  WA.    Meetings and
   telephone conversations.
  Personal Communications and References Consulted but not Cited
Clark,  W.    October 10,  1989.    Idaho  Department of  Health and
   Welfare,  Division  of  Environmental  Quality,  Water  Quality
   Bureau.  Boise,  ID.  Telephone conversation.
Bushnell, V. C.   1969.   Eutrophication Investigation of American
   Falls Reservoir.  U. S. Bureau of Reclamation, Pacific Northwest
   Region, Boise,  ID.  approx. 150 pp.

Carter,  D.  L.    1980.   The  Impact of  Irrigation  on Groundwater
   Quality.  Proceedings of a Special  Conference on Irrigation and
   Drainage - Today's Challenges.  July 23-25, 1980.  Boise, ID.

Carter, D. L.,  Robbins,  C. W., and Bondurant,  J. A.   1973.  Total
   Salt, Specific  Ion,  and Fertilizer Element Concentrations and
   Balances in the Irrigation and Drainage Waters of the Twin Falls
   Tract  in  Southern Idaho.   U.  S.  Department  of  Agriculture,
   Western Region,  Agricultural  Research  Service.   Kimberly, ID.
   37 pp.

Carter,  D.  L.,  Robbins,  C.  W.,  and  Bondurant,  J. A.     1974.
   Phosphorous Associated With Sediments in Irrigation and Drainage
   Waters  for  Two  Large  Tracts  in Southern  Idaho.   Journal of
   Environmental Quality Vol 3, No. 3,  July-September, 1974.  3 pp.

Dixon,  J.  E.,  Lingg, A.  J., Naylor,   D.  V.,  Hinman, D.  D.,  and
   Stephenson, G.  R.   1982.    Non-point Pollution  Control for
   Rangeland Wintering:  Livestock Operations (Ground Cover) .  Idaho
   Water Resources Research Institute.  Moscow, ID.  31 pp.

Goldman, C. R. and Home A. J.   1983.   Limnology.   Mcgraw-Hill,
   Inc.  San Francisco,  CA.  464 pp.

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Hackett,  B.,  Pelton,  J.,  and Brockway, C.   1986.   Geohydrologic
   Story  of the  Eastern Snake River Plain and the Idaho National
   Engineering Laboratory.   United States  Department of Energy,
   Idaho Operations Office,  Idaho National Engineering Laboratory.
   Idaho  Falls,  ID.  32 pp.

Henderson-Sellers, B. and Markland, H.  R.    1987.  Decaying Lakes:
   The Origins and Control of Cultural  Eutrophication. John Wiley
   and Sons.  Great Britain.  254 pp.


Johnson, J. M., Odlaug, T. O., Olson, T. A.,  and Ruschmeyer, O. R.
   1970.   The Potential  Productivity of Fresh Water  Environments
   As Determined By An Algal Bioassay Technique.   Water Resources
   Research   Center  University  of  Minnesota  Graduate  School.
   Minneapolis, Minnesota.   79 pp.

Likens, G. E.    1972.   Nutrients  and Eutrophication: The Limiting-
   Nutrient   Controversy.     American  Society of  Limnology  and
   Oceanography, Inc.  Lawrence, Kansas.  328 pp.

Middlebrooks, E. J., Maloney,  T. E.,  Powers, C.  F.,   and Kaak, L.
   M.   1969.    Proceedings  of  the Eutrophication-Biostimulation
   Assessment Workshop.      Federal   Water   Pollution  Control
   Administration.  Corvallis, OR.  281 pp.

Minshall,  G.  W.  and  Rose,  F.  L.   1972.    A Pilot Program to
   Determine  the Effect of Selected Nutrients (Dissolved Organics,
   Phosphorous, and Nitrogen) on Nuisance  Algal Growth in American
   Falls  Reservoir.    Idaho Water  Resources  Research Institute,
   Moscow, ID.  approx. 75 pp.

J. M.  Montgomery Engineers.   1979.   State  of Idaho  Summary 208
   Water Quality Management  Plan.   Idaho  Department of Health and
   Welfare,   Division  of  Environmental   Quality,  Water  Quality
   Bureau, Boise, ID.  approx. 100 pp.

Middlebrooks,  E. J., Falkenborg, D. H., and Maloney,  T. E.  1974.
   Modeling the  Eutrophication Process.   Ann Arbor Science.  Ann
   Arbor, MI.   228 pp.

Middlebrooks,  E. J., Falkenborg, D. H., and Maloney,  T. E.  1976.
   Biostimulation  and  Nutrient  Assessment.   Ann  Arbor Science.
   Ann Arbor,  MI.  390 pp.

Organization  for Economic  Co-operation  and  Development.   1970.
   Scientific  Fundamentals   of  the Eutrophication  of  Lakes  and
   Flowing  Waters,  with  Particular  Reference  to Nitrogen  and
   Phosphorus as Factors  in Eutrophication.   Paris,  France.  159
   pp.

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Robbins, C. W. and Carter,  D.  L.    1978.   Salt Outflows from New
   and  Old Irrigated  Lands.    Soil Science  Society  of  America
   Journal Vol 42, No. 4, July-August,  1978.  Madison, WI.  5 pp.

Robbins, C. W. and Carter,  D.  L.   1980.  Nitrate-Nitrogen Leached
   Below the  Root Zone  During and Following"Alfalfa.   Journal of
   Environmental Quality Vol.  9,  No. 3,  July-September,  1980.  4
   pp.

U. S.  Environmental  Protection Agency.   1973.   Nitrogen Sources
   and Cycling in Natural Waters.  Prepared by P. L. Brezonik and
   C.  F.   Powers.    USEPA  Office of  Research  and Development,
   Corvallis OR. approx. 110 pp.  EPA-600/3-73-002

	.    1977.    Nonpoint  Source -  Stream Nutrient  Level
   Relationships: A  nationwide Study.   USEPA,  Office of Research
   and Development.  Corvallis, OR.  151 pp.  EPA-600/3-77-105


U. S. Environmental Protection Agency.   1978.  Summary Analysis of
   the North American (U. S.  Portion) OECD Eutrophication Project:
   Nutrient Loading—Lake Response Relationships and Trophic State
   Indices.   Prepared by W.  Rast and  F.  Lee.   USEPA Office of
   Research and Development, Corvallis, OR.  approx. 230 pp.  EPA-
   600/3-78-008

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