PB82-189648
A Review of Aquatic Habitat Assessment Methods
(U.S.) Corvallis Environmental Research Lab., OR
March 1982
                        U.S. DEPARTMENT OF COMMERCE
                     National Technical Information Service

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                            EPA-600/3-82-002


                                      PB82-1896U9
     A REVIEW OF AQUATIC HABITAT
         ASSESSMENT METHODS
                 by

         Gerald S.  Schuytema

         Freshwater Division
  Environmental Research Laboratory
U.S. Environmental  Protection Agency
      Con/all is, Oregon  97333
  ENVIRONMENTAL RESEARCH  LABORATORY
 OFFICE OF RESEARCH AMD DEVELOPMENT
U.S.  ENVIRONMENTAL PROTECTION  A^EilCY
      CORVALLIS, OREGON  97333

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                                   TECHNICAL REPORT DATA
                            (Please read Instructions on the reverse before completing]
1. REPORT NO
     EPA-600/3-82-002
ORD Report
3 RECIPIENT'S ACCESSION NO
           1 8 9 6 u 8
4. TITLE AND SUBTITLE
   A Review of Aquatic  Habitat Assessment Methods
                                                            5 REPORT DATE
                                                                  March 1982
                                                            6. PERFORMING ORGANIZATION CODE
7 AUTHOR(S)

   Gerald S. Schuytema
                                                            8. PERFORMING ORGANIZATION REPORT NC
9. PERFORMING ORGANIZATION NAME AND ADDRESS
   Environmental  Research Laboratory
   Office of  Research and Develooment
   U.S. Environmental Protection Aaency
   Corvallis, Oregon 97333
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                         11. CONTRACT/GRANT NO
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   same
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                            inhouse  12-79  to  12-81
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                                                               EPA/600/02
15. SUPPLEMENTARY NOTES
16 ABSTRACT
   Approximately  30 aquatic habitat assessment techniques  were summarized and compared
   to provide  information to watershed and nonpoint  pollution control nananors.  f1ost
   methods  have been developed by Federal or state agencies and have had r-reatest appli-
   cation  in the  western United States.  They are classified accordinn to a number of
   mutually interacting catenories such as impact assessment, inventory and general
   descriotion, salmonid or non-salmonid streams, particular fish species orientation.
   channel  stability, transect, and biotic indices.  Many  of the methods have dev.:iooed
   indices  or  numerical values which can be used for comparisons or evaluation.  Sub-
   stantial effort is noino into the develooment of  habitat evaluation procedures (HEP)
   by the  U.S. Fish and Hildlife Service, techniques desinned for assessing proiect
   impacts  oriented toward a particular species of interest.  Parameters most freauently
   considered  in  the reviewed methods included flow, temperature, water surface width,
   turbidity,  gradient, velocity, depth, bank stability  measures, bottom size distribu-
   tion, siltation, cover, pool size, attached beoetation, fish and invertebrate types,
   riparian zone  venetation and shade, and obstructions  such as waterfalls, dams, and
   culverts.   Hhile many methods are similarly based on  such parameters as substrate,
   cover,  flow, depth, and stream and floodplain morphology, the ultimate choice of metho:
   depends  on  geographical location, stream type, investigator expertise, and project no?
17
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                                  DISCLAIMER

     This  report has  been reviewed  by  the Corvallis  Environmental  Research
Laboratory,  U.S.  Environmental  Protection  Agency,  and  approved  for publica-
tion.   Mention  of  trade  names  or  commercial  products  does  not  constitute
endorsement or recommendation for use.

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                                   ABSTRACT

     Approximately  30  aquatic habitat  assessment techniques  were  summarized
and  compared  to  provide  information  to  watershed  and  nonpoint  pollution
control  managers.    Most  methods  have  been  developed  by  Federal  or  state
agencies and have had greatest application in the western United States.   They
are classified according  to  a number of mutually  interacting  categories such
as  impact  assessment,  inventory and  general  description,  salmonid  or non-
salmonid  streams,   particular fish  species  orientation,  channel  stability,
transect, and  biotic  indices.  Many of the methods  have  developed  indices or
numerical values which can be used for comparisons or evaluation.   Substantial
effort is going into the development of habitat evaluation procedures (HEP) by
the U.S. Fish  and Wildlife  Service, techniques designed for assessing project
impacts  oriented  toward  a  particular  species  of interest.   Parameters most
frequently  considered  in  the reviewed methods  included flow,  temperature,
water  surface width,  turbidity, gradient,  velocity,  depth,  bank  stability
measures,  bottom size  distribution,  siltation,  cover,  pool  size,  attached
vegetation,  fish and invertebrate types,  riparian zone vegetation  and shade,
and obstructions such  as  waterfalls, dams, and culverts.  While  many methods
are similarly  based  on  such  parameters as substrate,  cover,  flow,  depth, and
stream  and  floodplain  morphology,   the  ultimate  choice  of  methods  for  any
purpose including nonpoint source pollution evaluation depends on geographical
location, stream type,  investigator expertise,  economics, and precise project
goals.

     Work  was  initiated  in   December  1979  and completed  in December  1981.

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                                   CONTENTS



Abstract	   iii



Acknowledgement 	    vi



     1.    Introduction  	    1



     2.    Conclusions 	    4



     3.    Recommendations 	    5



     4.    Method Classification and Parameters   	    6



     5.    Assessment Techniques 	   15



               Salmonid Stream Methods   	   15



                    Channel  Stability Group  	   15



                    Transect Group  	   16



                    Diverse  Method Group   	   17



                    Predictive Model  Group   	   18



                    Riparian Zone Group	   19



                    Photographic Technique Group   	   19



               Salmonid/Non-Salmonid  Stream Methods    	   20



                    Diverse  Method Group   	   20



                    Incremental Flow Group   	   21



                    Habitat  Evaluation Procedures  (HEP)  Group  	   22



               Non-Salmonid  Stream Methods   	   23



               Supplemental  Methods 	   24



     6.    Discussion	26



References	29
                                               Preceding page Hank

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                                ACKNOWLEDGEMENT

     The constructive  comments  of K.  W. Malueg  throughout  this study and the
efforts of many  Federal  and state researchers and administrators who supplied
information and  advice about habitat assessment techniques in their areas are
gratefully acknowledged.

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                                   SECTION 1

                                 INTRODUCTION

     Habitat assessment has  long  been recognized by natural resource agencies
as an essential  task  in the management and preservation of fish and wildlife.
The need  by managers for  detailed  habitat inventory data  for  fish  and other
species to  describe critical  habitats  for the  benefit of  these  species has
been aptly expressed by Jahn (1978).  Water quality agencies are now beginning
to realize  that measuring  the physical and  chemical  characteristics  of the
water column is  insufficient to predict the biological  condition  of a stream
system because of  changes  that can also occur  in  the  quality of the physical
environment from land use impacts.

     Flow regime, water quality,  habitat structure, and energy source are the
most important variables affecting this biological  integrity (Karr and Dudley,
1981).   For instance,  fluctuating water levels,  storm events, available light,
temperature, dissolved  oxygen,  suspended and  dissolved  materials,  physical
structure as reported by  bottom type and channel configuration, and cover are
all important  interacting  factors which influence  the  presence and  distribu-
tion of invertebrates and fish.  Activities such as urbanization, agriculture,
silviculture,  mining,   construction,  land  disposal,  and   hydrologic  modifi-
cations often  have severe  impacts  upon physical  habitat  quality.   Ischinger
(1979)  emphasized   the  importance  of  inventorying and  identifying  aquatic
habitats  in  nonpoint  source (NPS) management and  characterized NPS  pollution
as the most  pervasive  and ubiquitous water quality  problem in North America.

     Habitat has been most simply defined as  the place  where an organism lives
(Odum,  1971)  or,  in  broader  terms, as  the  relatively well  defined  places
having sufficient  resources  of energy and matter  providing necessary minimum
life  requirements   (Davis,  1960).   The  relationships  of  habitat  terminology
concepts  to natural  resource  management have  been  summarized by  Coulombe
(1978).    The  concept  that  habitat  is  crucial  to  organizing  knowledge about
wildlife  so  it  can be  used by  forest managers  (Thomas,  1979) can also  be
applied  to  the  stream  environment.   Habitat  is  critical  to  organizing
knowledge about aquatic life so it can be used by watershed managers.

     Aquatic habitat  assessment is  closely  related to  the  concept  of  stream
classification.   The  parameters  proposed in  several   classification  schemes
(Table 1) are those used in many habitat assessment techniques.  Platts (1980)
called attention to the lack of a workable system for classifying fish habitat
and  to   the   importance  of  developing  such a system.  Other  studies  have

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     TABLE 1.  HABITAT PARAMETERS IN SEVERAL STREAM CLASSIFICATION SCHEMES
Classification Scheme
     Habitat Parameters
Remarks
Ricker, 1934
Pennak, 1971, 1978
Persoone, 1979
Width, depth, substrate,
temperature, velocity, dissolved
gasses and solids, plants, and
animals

Width, flow, velocity, substrate
temperature (summer and winter),
turbidity, total dissolved
inorganic and organic matter,
hardness, dissolved oxygen,
rooted aquatics, streamside
vegetation

Width, slope, hardness,
substrate, temperature
Ontario streams
Broad applications
in USA and world
Western Europe
emphasized the importance of certain habitat parameters.  For instance, Gorman
and  Karr (1978)  correlated  habitat  complexity  with  fish  species  diversity
using depth,  bottom type and current.  Depth, width, and elevation were found
by Platts (1976)  to be very important in controlling fish species density and
composition.

     There  are  few  compilations  of the  diverse  and scattered  literature  on
aquatic  habitat  assessment.    Hall  and  Knight  (1981)  reviewed the  natural
variability of stream salmonid populations with respect to models that quanti-
tatively  describe  habitat  quality.   Wydoski  and  Duff  (1978)  compiled  390
references on stream habitat improvement, but  included only  a  few on habitat
assessment.    A  more complete  effort  by  Marker et  al. (1980)  resulted  in  an
excellent review  and bibliography  on the background and  development  of many
assessment  techniques,  and  included  classification,  information  storage  and
retrieval,  and  inventory and  evaluation  procedures  for  both terrestrial  and
aquatic environments.

     Approximately 30 methods, many interrelated, were located in a literature
base formed in large measure by state and Federal agency reports.  While these
methods  can  generally  be  divided  into  categories  based  on  stream  type
(salmonid or non-salmonid), purpose (impact assessment and general inventory),
or  technical  approach,   actual  differences  between  many  are   slight.   This

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compilation  will  help  water  quality  investigators  and  natural  resource
managers unfamiliar wi'th aquatic habitat assessment techniques become aware of
methodology sources and of what appear to be current trends in method develop-
ment.   It  will  also  aid  in  deciding  what techniques  might  best fit project
goals.

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                                   SECTION 2

                                  CONCLUSIONS

     The  development  of habitat  assessment procedures  has progressed  from
simple surveys, many designed for inventory, and from simple index type rating
systems  to  more complex, often  species-oriented  systems,  frequently assisted
by computerized information storage and retrieval.  This increased development
is a reflection of the recognition of the importance and usefulness of aquatic
habitat  in  stream  baseline  and  impact assessment.  Many governmental agencies
are presently  developing techniques  applicable to their own needs.  The trend
in method  development is  toward systems that  recognize  habitat  potential  as
valuable.  Comparing a stream's  condition to its own potential  is a large step
forward in understanding perturbation effects.   Much development is also going
into techniques for mitigation determination.

     A  universal  habitat  assessment  technique   is  probably  not  realistic
because  of  the  diversity  of  watershed  and stream  types,  but  a  number  of
methods (Dunham and Collotzi, 1975; Collotzi and Dunham, 1977;  Rickert et al_. ,
1978; Stalnaker, 1978;  Sternberg,  1978;  USFWS, 1980b;  0.  Fajen,  pers.  comm.)
have the potential,  with regional  adaptations, to be used over wide areas and
should be  considered when  choosing  a technique.   The  development  of  a tech-
nique  applicable  only  to  a  certain type  of pollutant  or  impact is  also
probably impractical, but the selection of a method which objectively measures
the impact upon a stream parameter of interest can De useful.  The development
of methodology applicable  to  other  than salmonid  streams would  be  of great
benefit to lowland watershed and resource managers.

     Diverse  interests  and goals  in different  Federal  and  state  agencies
concerned  with  the   enforcement of  water  quality  standards,  detection  and
documentation of pollution,  protection of the natural  environment, and manage-
ment of  natural resources  has  led naturally to  the  development  of different
types  or  views  of  habitat  assessment  techniques.   Increased  cooperation
between  agencies  and  increased awareness  of  new techniques  can do much  to
promote the use and improvement  of habitat technology.  The ultimate choice of
an aquatic  habitat method,  however,  may hinge  upon  a  complex  of economics,
available expertise,  and project goals.

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                                   SECTION 3

                                RECOMMENDATIONS

     While the ultimate choice of a method depends on expertise, resources and
project goals, methods  which  evaluate streams with regard to their own poten-
tial are more ecologically sound.

     A most important requirement for any method is the need for field valida-
tion.  It is only in this way that the ability of different methods to produce
similar results  can be  determined.   Individual methods  need  to be evaluated
for reproducibility and range of test conditions.

     Where  resources  are limited,  a method  based  on visual  stream  analysis
(Duff and Cooper, 1976, rev.  1978) may be the best choice.

     Methods  such  as Rickert  et  al_. (1978), Dunham  and  Collotzi  (1975), and
Eiserman et al.  (1975), which evaluate physical structure in addition to other
factors particularly related to fish spawning, residency, and migration should
be considered when selecting a general purpose technique.

     The Habitat Evaluation Procedures (USFWS, 1980b) should be considered for
large projects where there is a concern for particular species.

     Incremental  flow  methodology (Stalnaker,  1978,  1979a, 1979b)  should be
considered  when  habitat  concerns are  strongly  linked  to  demonstrating the
impact of flow regimes on fish habitat potential.

     Supplemental  methods  such  as  those  proposed by  Crouse  et  al.  (1981),
Shirazi and Seim (1979), and Lotspeich and Everest (1981) should be considered
when there  is a  particular interest in the relationships of salmonids and the
stream bottom.

     Most method  development has  been  concerned with  salmonid-type  streams.
Further development should  concentrate on  what  criteria  are  necessary for
non-salmonid stream assessment.

     Cooperation should  continue  between  concerned agencies and investigators
to promote the improvement of assessment technology.

     Measurement of physical  habitat  should not be an  end  in  itself.   In
stream evaluation,  habitat is  but one variable  among many which affect the
biological integrity of a system.

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                                   SECTION 4

                     METHOD CLASSIFICATION AND PARAMETERS

     Many of  the  reviewed techniques are still under development, several are
represented by  a series  of reports or publications  and  some  are unpublished
(Table  2).    Federal  agencies  (U.S.  Forest  Service,  U.S.  Fish  and  Wildlife
Service, U.S. Bureau  of Land Management, U.S. Soil Conservation Service) have
been responsible  for  the majority of methods  with state  agencies (Department
of  Fish, Game,  Conservation,  Natural  Resources,  Wildlife)   and  interagency
groups  accounting  for the remainder.  Primary emphasis on  method development
has been in the West.

     The methods  can be  classified into a  variety of groups depending upon
their intended purposes,  stream types and technical approaches.  These groups
are not  necessarily  mutually exclusive,  as a  given  method  can be represented
in  several   categories   or  be  applicable  to a   number  of situations.   For
instance,  while  most  of the  methods  (25)  appear  to  be  used  in  salmonid
streams, six  are also  used in  non-salmonid  waters but even  these  have been
derived from salmonid type methods.

     The methods can also be categorized according to purpose.   Impact assess-
ment techniques  are  used primarily  to evaluate  the impact of water  and land
resource  development  projects,  construction  and  alterations  due   to  human
activity,  differing  flow  regimes,  and  pollution.   General   description  or
inventory  methods  are   primarily used  for  fisheries,  water  and   land  use
planning  and management,  habitat  research,  baseline  data inventories,  and
environmental statements.

     Some of  the  salmonid stream methods are based in part on the U.S.  Forest
Service  (USFS) Stream Reach Inventory and Channel Stability Evaluation.   This
methodology was  developed by Pfankuch (1975) to  systemize  evaluations  of the
resistive  capacity  of   mountain   stream  channels  to bed  and  bank  material
detachment and to produce information on stream reaction to changes in flow or
sediment production.  Adding  factors related specifically to aquatic organism
habitat  allows  this  approach  to be  used  as a habitat  assessment technique.

     Target  species  or  species-oriented  type   methods  applicable  to  both
salmonid and  non-salmonid streams are designed for  the assessment of habitat
of  a  particular species  or group  of  species.   The  approach  is narrower and
more species-oriented than other method types.    It  seems  to  have  been used
only by  Federal  agencies for impact assessment type evaluations.  Some of the
methods  just  described  can  also  contain index and transect aspects.   Index or
numerical  values  facilitate  comparisons  or  judgments  between  stations  or
locations,  all  major method  groups contain  some  index  producing techniques.

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                       TABLE  2   PRINCIPAL  FEATURES  OF  HABITAT  ASSESSMENT METHODS
Reference
or
Communication
(1) Duff and Cooper,
1976, rev 1978
Applicable
Stream
Type1 Location
S Western
States
Reported
Use
General
Inventory
Principal Feature and Comments
Based on channel stability
methodology (Pfankuch, 1975) Uses
ocular survey techniques or more
detailed transect sampling. Can be
used on three levels of of effort.
Ocular techniques can survey 1.6 km
of stream in 1.5 hr.
(2) Duff,  USBLM,  Utah
Western        General        Based on channel stability methodo-
States         Inventory      logy.  Data collected within .16 km
                              segments at 1.6 km intervals.
                              Methods not finalized.  Survey costs
                              $51/km, 1.4 km/person day.
(3) Rickert et a_K ,  1978
Oregon         Impact         Based on modified channel stability
               Assessment     methodology in addition to habitat
                              factors of particular concern to
                              salmonies.  Developed in assessment
                              of non-point stream erosion problems.
                              Authors believe methods have wide
                              use potential.
(4) Washington Dept.
    Ecology,  Olympia
Washington     Impact         Uses Oregon's modification of
               Assessment     channel stability methodology in
                              addition to photographic technique.
                              Also evaluates wildlife habitat in
                              canopy and streamside zones
                              Emphasizes protection of streamside
                              management zones.
(5) Coffin, 1979
Nevada         General        Based on channel stability
               Inventory      methodology in addition to transect
                              techniques of Dunham and Collotzi
                              (1975).
(6) N  H.  Newhouse,
    Kootenai  National
    Forest, Montana
Montana        General        Based on channel stability
               Inventory      methodology and habitat measurements.
                              Uses point system to rank by para-
                              meters.  Emphasizes resident and
                              spawning fish habitat suitability.
(7) Cooper, 1979
Idaho,         Impact         Based on channel stability
Wyoming        Assessment     methodology   Used primarily to
                              predict grazing effects on stream
                              banks and channels.
(8) Herrington and
    Dunham, 1967
Western        General        Emphasizes features of pools,
States         Inventory      riffles, bottom composition, and
                              riparian vegetation.  Early develoo-
                              ment of transect sampling techniques.
(9) U S.  Forest Service,
    1969
Montana,       General        Designed to evaluate conditions
Idaho          Inventory      limiting fish production   An early
                              version of Duff and Cooper (1976)
                              without channel stability methodo-
                              logy.

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Table 2.  (continued)
  Reference
     or
Communication
Applicable
  Stream
   Type1
                                        Location
Reported
   Use
Principal Feature and Comments
(10) Dunham and Collotzl,
    1975
               Western        General         Enlargement  of  Herrington and
               States         Inventory      Dunham (1967) emphasizing computer
                                             storage and  data  manipulation.
                                             Uses  transect sampling  and deter-
                                             mines an index  value  of optimum
                                             habitat.   Authors indicate that
                                             inclusion of additional variables
                                             may allow use in  non-salmonid
                                             waters.
(11) Collotzi and Dunham,
     1977, U.S. Forest
     Service, Ogden, Utah
               Western        General         Uses  transect system of  Dunham and
               States         Inventory      Collotzi  (1975)  to form  basis  of
                                             General  Aquatic  Wildlife System
                                             (GAWS)    Includes  stream and  lake
                                             analysis,  habitat  typing and
                                             component  analysis,  statistic  and
                                             data  inventory.  Non-salmonid  fish
                                             will  eventually  be included.
(12) Parsons, 1979
               Oregon         General         Emphasizes  spawning  gravel,  degree
                              Inventory      of flow retardation  and  stages  of
                                             successional  vegetation  in  riparian
                                             zone.
(13) Oregon State Game
     Commission et al. ,
     1970
               Oregon         General         Measures  general  physical  and
                              Inventory      biological  parameters  in  0 4 km
                                             long survey units.   A  simple method
                                             still  in  limited  use.
(14) Eiserman et al_.,
     1975
               Wyoming        Impact         Water  chemistry  and  stream  channel
                              Assessment     features  are  rated numerically.
                                             These  scores  are calculated into  a
                                             habitat value of 1-10 with  an
                                             accompanying  adjective  rating.
(15) U.S. Forest Service,     S
     Juneau, Alaska
               Alaska   "      General         These  techniques  being  tested  in
                              Inventory      Alaska are  based  on  five  levels of
                              and Impact     intensity,  three  for inventory of
                              Assessment     resources and  two for impact
                                             assessment   Data needs  include
                                             fishery resource  descriptions,
                                             physical and biological  information,
                                             and baseline information  on
                                             unmanipulated  habitat.
(16) Binns, 1978; Binns
     and Eiserman, 1979
               Wyoming        Impact         This  is  a  complex  system designed
                              Assessment     to  quantify  transect  stream  habitat
                                             with  a Habitat  Quality  Index (HQI)
                                             predictive model.   The  model  predicts
                                             standing crop,  evaluates habitat in
                                             standard habitat units  and compares
                                             habitat  loss or gain.
(17) Nicnelson ana Hafele,
     1978
               Oregon         General         Regression  models  describe  relation-
                              Inventory      ships  between  stream  habitat  and
                                             infaunal  rearing potential  at low
                                             flows  and predicts amount of  habitat
                                             at any flow.   Stresses  need for
                                             testing.

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Table 2   (continued)
Reference Applicable
or Stream
Communication Type1
(13) Riparian Habitat S
Subcommittee, 1979
Reported
Location Use Principal Feature and Comments
Washington, General An interagency effort to evaluate
Idaho Inventory riparian ecosystems. Percentage of
evaluated features are compared to
optimum habitat conditions
Recommend optimum features.
(19) Greentree and
Aldrich, 1976
S California General
Inventory
This unconventional approach to
trout habitat assessment uses
aerial photography. Authors report
high degree of correlation with
actual conditions, can assess about
25 km/person day.
(20) Seehorn, 1970
S, NS     Georgia,        General
          Virginia,       Inventory
          So  Carolina
Designed to evaluate trout waters
but appears applicable to headwater
bass streams.   An index value is
given for both present and potential
conditions.
(21) U.S.  Soil Conservation   S, NS
     Service, 1977
                         Impact         Develops guidelines for protection
                         Assessment     of stream habitat by scoring various
                                        factors.  These scores are modified
                                        by an importance factor and con-
                                        verted to a final grade of 1-10.
                                        A use rating is also determined
                                        primarily designed for channel
                                        projects.
(22) 0. Fajen, Missouri
     Dept. Conservation,
     Columbia
S, NS     Missouri       Project        This method,  still  under develop-
                         Assessment     ment, rates various stream factors
                                        on a scale of 1-10.  Evaluated
                                        factors are intended to be free
                                        from subjective judgment.
(23) Sternberg, 1978
S, NS     Minnesota      General        Designed to determine the best
                         Inventory      fishery management procedures.
                                        Surveys are in two phases:   1)
                                        surveying the entire stream,  and
                                        2) collecting detailed information
                                        on flow, watershed, physical/
                                        chemical, and biological  factors
(24) Stalnaker, 1978, 1979a,  S, NS
     1979b
          Widespread     Impact
                         Assessment
Designed to demonstrate the impact
of any given flow regime on fish
habitat potential.  Uses computer
simulation and increased flow
methodology.  Sampling done in
transects.  Method oriented to a
particular species of interest.

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Table 2.  (continued)
  Reference
     or
Communication
Applicable
  Stream
   Type1
                                        Location
Reported
   Use
Principal  Feature and Comments
(25) U.S. Fish & Wildlife
     Service, 1976; Raleigh,
     1978, USFWS, 1980a,
     Western Energy Land
     Use Team, Ft. Collins,
     Colorado
     S, NS     Widespread     Impact         Methods represent Habitat Evaluation
                              Assessment     Procedure (HEP) which results in
                                             a quantitative index value for
                                             assessing habitat.   Early methods,
                                             still  in use,  are based on a score
                                             developed from capacity of habitat
                                             to meet requirements of 10 repre-
                                             sentative species.   Later develop-
                                             ments  include  use of a habitat
                                             suitability index where selected
                                             parameters are measured and
                                             compared with  habitat require-
                                             ments  as indicated by response
                                             curves.   A very sophisticated
                                             system requiring high degree of
                                             expertise, most valuable for larger
                                             projects.
(26) U.S  Soil Conservation   NS        Kansas         Impact
     Service, 1978                                     Assessment
                                             Rates  physical,  chemical,  and bio-
                                             logical  habitat  attributes on a
                                             score  of 1-10.   These  values  are
                                             used to  compute  an  average habitat
                                             value  which can  be  converted  into
                                             habitat  units
(27) Kansas Fish and
     Game Commission
     NS        Kansas         Impact         Designed to evaluate  Kansas  bridge
                              Assessment     projects.   Rates  chemical  and bio-
                                             logical  features  on scores of 1-5
                                             or 1-10  which  are combined to obtain
                                             total  habitat  score.   Undergoing
                                             revision.   An  example of an  inexpen-
                                             sive  procedure.
  S = Salmonid, N = Non-Salmonid.
                                                   10

-------
Transect  methods  are  based upon  sampling  a transect  across the  stream in
contrast to a  stream  reach of particular  length.   Only  Federal  agencies seem
to have emphasized this type of approach.

     The major habitat parameters and related factors used or evaluated In the
various  methods  are   grouped  In  Table  3.    The   groups  (surrounding  area,
riparian zone, general descriptors, stream banks, stream bottom,  fish habitat,
limiting factors,  and biology) are each presented with a percentage indicating
the relative  number of reviewed  methods using the  parameters  within a group.
Individual parameters  are  ranked and listed according to predominance of use.

     Habitat  parameters  associated with surrounding  stream  areas  are charac-
terized  by topographical   and  geographical  features  and  land   use  of  the
surrounding and upstream areas.   A more closely associated area,  the riparian
zone, gives primary importance to vegetative type,  shading effect,  and stream-
side cover.   Most  of  the methods used a large variety of descriptive terms to
characterize  habitat.   Some of the more important  include flow,  temperature,
width, velocity, gradient,  turbidity, and depth.

     Stream banks  are considered  important.   The  parameters  here are mostly
those  used in  the USFS  channel  stability  methodology.   Bank  stability,  a
related  term,   is  preferred in  non-channel  stablity oriented methods.   Sub-
strate size distribution is an important stream bottom parameter.

     Many of the methods stress various aspects of fish habitat,  with instream
cover and  the  number  and size of pools ranking highest.   Obstructions to fish
migration, are  primarily characterized by culverts, dams,  and  debris piles.
Non-physical  factors associated with habitat analysis include features such as
attached  algae and macrophytes,  fish  species,  size, weight, and abundance.

     Many  of  the  methods   were  designed  using  English  measurements.   These
units were converted into the metric (SI) system where practicable; an equiva-
lent  was  added  in parentheses  when  a conversion  might change  an author's
intent.
                                       11

-------
Table 3.   Habitat parameters and related factors used or evaluated  in  various  types  of  assessment  methods
Salmonid-Type Streams
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Habitat Parameters
Surrounding Area (3G%)2
surrounding land use
topography /geography
upstream land use
historical land use
flood plain condition
urbanization
Riparian Zone (78%)z
vegetation species/type
percent shade
s t reams i do cover
vegetation size
vegetation density
width of /one
ungulate grazing/damage
flood plain 'width
vegetation successions!
stage
General Descriptors (100%)z
flow
water temperature
water surface width
co 1 or/turb i d i ty/ transparency
gradient
velocity
average depth
air temperature
channel width
length of segment
elevation
C en
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X
X
X



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X
X
X
X
X
X
X
X
X
X
X
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X

X




X



X
X X
X X
X X
X X
X
XXX
X X
X

X X
and Collotzi 1975

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X
X

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X
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Salmon id/Non- Salmon id Non- Salmon id
Type Streams Type Streams
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X
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-------
Table 3 (continued)
Salmon id/Non-Salmonid Non-Salmon id
Salraonid-Type Streams Type Streams Type Streams
Habitat Parameters
pool/riffle ratio
stream order
stdijc/ level
stream length
channel type/configuration
tributaries/tributary of
sinuosity
pollution sources
bottom compos ition--fjeneral
valley bottom width
valley type/configuration
weather
drainage area
wjtershcd type
water source(s)
water use
percent channelized
stream area
direction of flow
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25'
XXX XXX XX X
XXXXXXX X
XX X XXX XX
X X X X X X X
XX XX
X XX XX
X X X X X
X XX
XXX X
XXX
XXX
XX X
X X
X X
X

X X
X
X
26 27




X


X X






X
X



Stream Dai.ks (57%)z
  bank stability
  land form slope
  mass wasting
  dubris jam potential
  vegetative bank protection
  channel capacity
  bank rock content
  obstructions
  cutting
  deposition
  percent erosion/bare soil
  height banks
  percent damage
  percent grazing
X
X
X
X
X
X
X
X
X
X


X
X
X
X.
X
X
X
X
X
X

X
X
X
X
X
X
X
X
X


X
X
X
X
X
X
X
X
X

X
X
X
X
X
X
X
X
X
X


X
X
X
X
X
X
X
X
X


X
X
X
X
X
X
X
X
X

Stream Bottom (86%)2
bottom size distribution
si Itation/scdimentation
consol ula lion/
particle packing
rock angularity
brightness
scour i ng/depo; i t ion
imbeddudnuss

X
X

X
X
X
X


X
X

X
X
X
X


X
X

X
X
X
X


X
X

X
X
X
X


X
X

X
X
X
X
X

X


X
X
X
X


X X X X X X


X
X
X
X
X

X X
X

X
X




X X X
XXX X XX

.




                                                                                                                                     (continued)

-------
Table 3 (continued)
Habitat Parameters
percent channel movement
rouijhness coefficient
Fish Habitat (75%)2
instrcam cover
pool length/width
pools no /percent
riffle width
spawning gravel
abundance/volume
pool depth
pool area
spawning gravel quality
riffle depth
riffles percent
spawning gravel size
runs percent
nursery habitat
riffle velocity
runs width
runs depth
runs velocity
Biology (86%)2
attached algae/macrophytes
fish species
invertebrate type/species
invertebrate abundance/rank
fisli abundance
fish size/weight
invertebrate diversity
Obstructions (43%)2
culverts
beaver dams/dams
waterfalls
debris piles/slides
log jams
channelization
dredging
impoundments
levies/dikes
riprap

1




X
X
















X
X
X
X
X
X
X












234
X


X X

X


X
X
X
X
X









XXX
X X
X
X
X X
X X
X

X
X
X
X
X





Salmon id- Type Streams
5 6 7 8 9 10 11 12

X

XX XXX
XX XX X
X X
X X X X

XX X
XXX
X
X
X

X X







XX XXX
X
X X
X X
X
X
X

XXX

X
X
X





Salmoni d/Non-Salmonid Non-Salmon id
Type Streams Type Streams
13 14 15 16 17 18 19 20 21 22 23 24 25'



XXX XXX
X
X X
X X

X X
X
X
X
X
X X

X X
X
X
X
X
X

X XX X
XXX X XX X X
XX X
X XX
X X XX
X X
X

X
X XX
X X
X XX
X
X
X
X


26 27



















t



X X
X X





X
X
X


X
X

X
X

1 Reference 25   Carly  IICP  methodology (Form 3-1101) assessed habitat according to  its  worth  for  fish.
  can vary depending upon species ot interest   Example here is from draft cutthroat trout  guidelines
2 Maximum percent of methods using parameters in each habitat parameter group
Parameters used in later HEP Methodology

-------
                                   SECTION 5

                             ASSESSMENT TECHNIQUES

SALMONID STREAM METHODS

Channel Stability Group

     Channel stability methods, those based in large part on USFS Stream Reach
Inventory  Techniques  (Pfankuch,  1975),  are designed  for cold  water  western
streams.  This basic technique evaluates 15 physical parameters on a numerical
scale  in  major  stream divisions  of  upper banks,  lower banks,  and  bottom.
Total scores are then expressed as poor, fair, good, or excellent.  In aquatic
habitat analysis, factors  relating  specifically to fish  habitat are  added to
supplement the physical factors.   Two stream bottom parameters, rock angular-
ity  and brightness  (Table 3),  were  considered by Sachet  (1977) to be inade-
quate  estimators  of  bedload  movement  in  areas  of  volcanic  or  sedimentary
bedrock.   The original  parameters  were  developed for  granitic  rock  where
angular  fragments  with a  high reflectance  indicate  polishing  and crumbling
caused by movement of bottom materials.

     Duff  and  Cooper (1976,  rev.  1978) designed a technique  usable  on three
levels  depending upon  objectives  and priorities.   Level  3,  a minimum survey,
is based  upon  obtaining background data and conducting an ocular or primarily
observational survey upon  representative reaches.   Level 2, an extensive field
survey, includes  Level  3  analyses  and adds  transect sampling.   Level  1, an
intensive  field  survey,  includes the  first  two levels,  the  collection of
sufficient data for  an  80% confidence level,  fish  and  benthic fauna measure-
ments, and permanent transect marking.

     The  transect analysis  basically involves establishing stream stations at
1  mile  (1.6 km)  intervals.   Five transects  are  then established  at  100 ft.
(30.5  km) intervals  upstream  from  each  station.   Measurements  across  each
transect  include  a  variety  of parameters  (Table  3).   The  data are analyzed
with  regard  to  factors  considered  absolutely  essential  for  maximum  fish
production  and more  easily   improved  with  stream  management  projects.   A
percent of optimum  habitat is also calculated.   The  ocular  survey technique,
Level  3,  is considered to be  a  quick alternative to transect sampling  as 1
mile  (1.6  km)  of  stream can be surveyed  in 1.5 hr.  The evaluated parameters
are  not  as  extensive or  detailed as  those  in  the  transect  survey,  but do
include the USFS stability analyses (Pfankuch, 1975).

     D. Duff  (Utah  State  Office,  USBLM, Salt Lake City, pers. comm.) proposed
methods  designed to  provide  a  standard  analytical   procedure  for  habitat
assessment.  Site specific  data (Table 3) were collected within 0.1 mile (.16
km)  long  segments established at  1 (1.6  km)  intervals.   Procedures for esti-
mating costs and manpower  are also included.

                                       15

-------
     Rickert  et al.  (1978)  in an  assessment of  erosion problems  modified
Pfankuch's  (1975)  technique  by using three  categories  of stable, moderately
stable, and unstable for Oregon mountain and lowland streams.   Habitat factors
of specific concern to salmonids are also evaluated and include spawning area
conditions,  bottom  rearing  area  conditions,  and  barriers  to  upstream fish
passage.   Two  major objectives of  this methodology  are  the formation  of  a
procedure  that can  be  used throughout  the  country  and the  development  of
technically  sound   information  describing  the  effects  of  land  management
activities.

     The  Washington  Department  of  Ecology  (D.  Hobbs,  pers.  comtn.)  uses
Oregon's  techniques (Rickert et  a_L , 1978)  in addition to  supplemental fish
and wildlife  data  to evaluate  aquatic habitats in  western streamside manage-
ment zones.   A management zone is defined as an area, varying from 25 (7.6 m)
to 50  (15.2  m) feet wide, adjacent to natural waters where specific attention
must be given  to water quality  protection measures.   A wildlife habitat rating
for birds,  animals,  and amphibians in canopy, subcanopy, ground, stream edge,
and stream channel  areas  are used in addition to  the aquatic  features  tabu-
lated in Table  3.   The evaluation of each zone also includes a series of three
photographs.

     Nevada stream inventories combine  two methods  (Coffin,  1979).   Habitat
inventory  analysis is by  the transect method of Dunham and  Collotzi (1975),
reviewed  in another section, while stream and channel  stability is evaluated
using  the method  of Pfankuch (1975).   The data  are  coded for  later storage,
retrieval and  manipulation.

     H.  Newhouse  (Kootenai   National  Forest,  Libby,  Montana,  pers.  comm.)
developed  a habitat assessment technique to objectively stratify habitat from
a  suitability standpoint.   Pool  habitat,  instream cover,  stream  side cover,
food abundance, and  channel  stability are considered key parameters in assess-
ing resident fish  habitat  suitability.  Instream cover, channel  stability, and
species  habitat are the  key parameters for  assessing spawning  habitat  suit-
ability.   Each parameter is subdivided into  levels,  each  with  a point value.
The sum  of these  values results in  one  of five ranks ranging from unsuitable
to very high suitability.

     Cooper  (1979)  described  a technique  to  evaluate and  predict ungulate
grazing effects on stream banks and  channel  stability in  some  northern Idaho
and Wyoming  streams.  Mass  wasting,  bank vegetation,  bank  rock content, and
bank cutting  provide good measures of damage.  Such grazing damage can reduce
streamside cover and increase the release of smothering sediment.


Transect Group

     The U.S.   Forest Service (1969) developed an early version of the transect
method of  Duff and Cooper (1976), already  mentioned,  but  without the channel
stability  techniques of  Pfankuch (1975).  While it includes a listing of warm
water  fish of  the area,  emphasis  is primarily  on  salmonid  habitat require-
ments.
                                       16

-------
     Another early  step  in the development of  transect  sample techniques for
western streams  is  represented by Herrington and Dunham (1967).  Measurements
(Table  3)  are taken  at five  transects established  at  each  sample  point at
right  angles  to  stream  flow.   Dunham and Collotzi  (1975)  enlarged upon this
technique and recorded habitat features in a manner designed for easy computer
storage and  later  recall  and manipulation.  This latter version also includes
a  procedure  to  determine a  habitat percent of  optimum value.   The authors
indicated that while  the  transect methods as applied were  biased toward cold
water  species, the  possible  inclusion of additional variables would make them
usable in warm water habitats.

     A  computerized  wildlife management  information  system  now undergoing
updating and revision  will soon be included in a Regional Aquatic Handbook by
the  U.S.  Forest  Service  (Collotzi  and Dunham,  1978; D. Dunham,  U.S.  Forest
Service,  Intermountain  region,   Ogden,  Utah,  pers.  comm.).    Known as  the
General Aquatic Wildlife System (GAWS), the system includes elements of stream
analysis, lake and reservoir analysis, macroinvertebrate analysis, stratifica-
tion  criteria,  and  data  management  programs.   Habitat typings  and  ratings,
habitat component  analysis,  statistical measures,  data  inventory, and summa-
tion programs can  be  provided by the  computer  to provide a basis for assess-
ments  of  present conditions  and  planning.  The  field  inventory procedure is
essentially the transect  technique  of Dunham and Collotzi (1975).  Warm water
fish  lists have  been included in the proposed  system as a  first  step  in the
eventual adaptation to both warm and cold water streams.

     An  extensive  field  survey  technique  was  designed to  provide  a  basic
inventory for  land and  resource  management planning  in the Siuslaw  National
Forest in Oregon  (Parsons, 1979).  Sampling is conducted in sections defined
as transects, but unlike a line across the stream, these transects are 100 ft.
(30.5  m) sections  of  stream  which extend  50  ft.  (15.2 m) upstream and 50 ft.
downstream from  midpoints set  at 0.5  mile  (0.8 km)  intervals.   This  method
emphasizes a  different approach  to  usual  inventory  techniques  in several  of
these  categories.   Special attention  is  given to  evaluating the  quality  of
salmonid spawning gravel.  A roughness coefficient,  "N", is  used to  estimate
the  degree  of  flow  retardation  due to banks,  bottom, and  obstructions.   Six
stages  of  successional  vegetation  in  the   riparian   zone   are  recognized.
Barriers to  fish passage  are examined in  detail and special  data forms are
used for cases  of logjams, landslide, culverts,  and falls.


Diverse Method  Group

     Several  methods  which do  not  fit readily  into the other categories  in
this section demonstrate a wide range of complexity and purpose.  The  first, a
simple general  inventory  method,  still in limited use, was  developed  about 10
years  ago  by four  cooperating state and Federal agencies  (Oregon State Game
Commission et aj. ,  1970).   It recommends that survey units  be 0.25 miles (0.4
km)  long  and emphasizes  the inventory of width, turbidity,  extent of  gravel
and pools,  cover, fish species and abundance,  and limiting factors.
                                       17

-------
     Guidelines for the inventory and evaluation of cold water Wyoming streams
with  flows <  5000 cfs  (508,000  m3/hr) were  developed  by  Eiserman  e_t a\_.
(1975).  Their  method for impact assessment also  includes rating systems for
terrestrial habitat,  aesthetics and recreation.  Sampling  location is based on
the division of the stream into reaches of different habitat diversity.  Water
chemistry  features  and stream channel features are rated  from 1 to 10.  These
scores are converted  into a habitat value from 1 to 10 which has an accompany-
ing rating  of  poor,  fair, good, or excellent.   Low scores indicate a limiting
feature which then may possibly be improved.

     The first  three  levels  of a multi-level  technique  being  tested by the
U.S. Forest Service (W.  Sheridan, Juneau, pers. comm.) in Alaska are designed
for inventory purposes.   The first level is designed to provide only the most
general  description of fishery  resources through  an  office-based technique.
The second  level  is an inventory of known physical and biological information
with placement  of the information in a central file for later use.  The third
level  is a field survey designed to provide baseline information on unmanipu-
lated  habitat.    Needs  for  quantitative data  are minimal while qualitative
needs are at a maximum.

     The remaining  two levels are designed for impact assessment.  Level four
is  a basic survey intended where a non-natural alteration of fish habitat has
been predicted.   Needs for  qualitative  data  are  minimal, while quantitative
needs  are  at a  maximum.   This  level  is intended  for  an  area  programmed for
major  land  use  activities.   The  fifth  or  final  level, an  implementation
survey,  is  the  most  intensive  and  is  to  provide   information  needed  to
coordinate final  site-specific needs for resource uses.


Predictive Model  Group

     Binns  and  Eiserman  (1979)  developed a system to  quantify Wyoming trout
stream habitat  in response to the need for non-monetary evaluation of fishery
resources.    Multiple   regression  analyses  of  various   habitat  parameters and
trout standing crop resulted  in the formation of a Habitat Quality Index (HQI)
predictive model.   Attributes having  the closest relationship to trout stand-
ing crop were  late  summer stream flows, annual stream flow  variation, water
velocity,  cover,  stream  width,  eroding  stream  banks,  stream  substrate,
nitrate, and  maximum  summer  stream  temperature.    These  are  rated  into five
categories from  0 (worst) to 4 (best).  The model  explained 96% of the varia-
tion  in  trout  standing  crop (R  =  0.983),  suggesting a close  relationship
between trout stocks  and HQI  predictions.

     Potential  uses of the HOI method include  a prediction of  trout standing
crop,  an evaluation of trout habitat in terms of standard habitat units (HU =
the amount of habitat quality  required  to  produce an  increase of  1  kg/ha in
trout  standing  crop)  and a  comparison  of  habitat loss  or gain  at  proposed
project sites (Binns,  1978).

     Nickelson and Hafele (1978) are developing regression models in Oregon to
describe the  relationship between stream habitat  and  salmonid  rearing poten-
tial during  low flow  and to  predict  the amount of habitat at any given flow.

                                       18

-------
Two cutthroat trout  models  explained 87-91% of the variation in standing crop
and are based on transect-measured depth, velocity, cover, and substrate.  The
models are based  on  a Habitat Quality Rating (HQR .) derived from the product
of  a  cover value, a velocity preference  factor, and the wetted  area of the
section.    The  steelhead trout model  is based  upon  a Habitat  Quality Rating
(HQR . ) derived from the product of a cover value, a depth and velocity value,
and a  value  for the wetted  area.   The authors stressed  the  need  for testing
the models.


Riparian Zone Group

     An  interagency  effort  outlined  a  procedure to  evaluate  riparian eco-
systems and to  establish  recommendations for managing fish and wildlife (Rip.
Hab.  Subcomm.   1979).   Shaded  stream  surface,  stream   bank  stability,  and
streambed sedimentation are used to evaluate fish habitat and other parameters
related  to wildlife.   Optimum  features are:   1) between 60  to  100%  of the
stream should be  shaded from June to September from 10 a.m.  to 4 p.m., 2) 80%
or more of the total  lineal bank distance should be in a stable condition, and
3)  no more than 15%  of the streambed should be covered by inorganic sediment.


Photographic Technique Group

     An unconventional  approach  to habitat assessment (Greentree and Aldrich,
1976)  used  aerial  photography  to  evaluate  trout  habitat  in  a  northern
California  stream.   Photo-interpretation  tests  showed   a  high  correlation
between actual  habitat conditions  and normal  color photographs.   Changes in
vegetation were easily  detected,  but  poor  accuracy  was obtained  for depth
estimation.  Shade was evaluated by using shadow length measurements and solar
formulas.   Rubble,  rocks,  and gravel  stream bottoms were identified in most
instances  at  1:1584  scale;   fine  and  coarse  rubble  types  were  more easily
identified at a 1:600 scale.
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SALMONID/NON-SALMONID STREAM METHODS


Diverse Method Group

     Seehorn  (1970)  designed  a procedure for judging  the  relative  quality of
trout  waters  in  National  Forest  streams  in  Georgia,  Virginia,  and  South
Carolina;  it also appeared  applicable to headwater bass  streams  in  northern
Georgia.  Streams are given three grades for both present and potential condi-
tions, with  each grade given a score of 1 to 10.   A biological grade  is based
on the stream's  capacity to provide native trout fishing; a use grade  is based
on fishing pressure and actual use; and an overall grade is based on the first
two grades.

     Recognizing  that channel  modification projects  can result  in  environ-
mental change,  the  U.S.  Soil  Conservation Service (1977) developed guidelines
for  the  protection and  enhancement of the  stream  environment.   A biological
index  is  obtained by rating various stream features (Table 3) on a scale from
1  to  10.    Water chemistry  and  pollution  are considered  to be  overriding
limiting  factors if  severe enough to affect fish life.  Sediment deposits are
not  rated since it  is  felt  the  rating  of the  pool/riffle  ratios,  width,
acreage,  and turbidity will  reflect sediment  effects.   The scores  are then
multiplied by an  importance factor to obtain individual stream feature scores.
The  scores  are  summed  and divided  by the total  of the  importance factor to
obtain a  final  grade of 1 to  10.   A grade of five or less indicates  a stream
with  a low  biological value.   A  use rating, a judgment  based  on  fishing and
related factors,  is obtained by considering fish resources, access, ownership,
fishing pressure  and success.

     A technique being  developed  by 0. Fajen, Missouri Department of  Fish ana
Game,  Columbia,  Missouri  (pers.  comm.) also rates a series of stream  features
on a  scale  of 1  to  10  (Table 3).   Scores obtained for these features are not
totaled  in  the  belief  that  it is  more useful  to  concentrate  on  those which
indicate  specific problems.   The  evaluated factors are intended to be free of
subjective  judgment and  to  take  into account the  deviation which  might be
expected  in   a  particular  stream.   For  instance,  the  stream bed condition
factor  emphasizes the stability  of material and  thus is as  applicable to a
sand/silt bottom  stream as one dominated by gravel and boulders.

     Sternberg  (1978)  developed methodology to provide  necessary information
for  the  determination  of the best  fishery management  procedures  in all types
of Minnesota streams.   A  standard comprehensive format  is  used  even though
some of  the  information may not apply in all cases.  Surveys are designed for
use in two phases.  A Phase I survey consists of walking or boating the entire
stream and recording pertinent data.  A Phase II survey consists of collecting


                                       20

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detailed information on  location  and flow characteristics, watershed descrip-
tion and  use,  and  general  information on  physical,  biological,  and  fishery
characteristics  (Table  3).   An additional  form is provided  for  a summary of
the stream survey and is divided into data pertaining to the entire stream and
data representative of  each similar  reach.    The  stream is  also classified
according to the fish species for which it is best suited.


Incremental Flow Group

     Some  methods  orientated toward various  relationships  between a selected
species  and  its  environment  are  based  on  instream  flow.   Waters  (1976)
stressed the  need  of  stream resource managers to  determine  the relationship
between flow  and  various  fish  habitat parameters to evaluate  the effects of
present -or  proposed  projects.    He  described  a  technique  using  transect
measurements and a computer to express the relationship between streamflow and
trout  feeding,  spawning,  resting  and cover  areas.   Stalnaker  and  Arnette
(1976)   intensively reviewed  methods  for  determining instream  flow needs for
fish and other aquatic  life  and stressed the need for more research on target
fish  species  at  all   life   stages,  refinement  of  large  river  measuring
techniques and  research  on which  all life stages  are  most vulnerable to flow
fluctuations.

     Most development and refinement of instream flow methodologies as related
to impact assessment came after the formation of the Cooperative Instream Flow
Service Group, a cooperative  venture of the U.S. Fish and Wildlife Service and
other  governmental agencies.  Hayden  (1978)  reviewed  the background  of the
group and  provided an  overview of their activities.  The Instream Flow Group
incremental methodology  has  been  applied  or will  be used on a large number of
streams across  the country  (Coop.  Instream  Flow  Ser.  Group,  1979b)  and has
been described in detail by Stalnaker (1978,  1979a, 1979b).

     The incremental flow  method  is intended to be  used  as a decision making
tool and  is designed  to demonstrate the  impact  of any  given  flow regime on
fish habitat  potential.   Basically it  consists   of  a  number of  steps:   1)
measurement of  stream  transects for velocity,  depth,  substrate,  temperature,
dissolved oxygen,  and  fish standing crop;  2)  hydraulic simulation of desired
stream reaches; 3) application of habitat evaluation criteria for each species
or  life  stage of  interest;  and 4)  calculation of a weighted  usable  area by
life stage of each species for each desired flow or channel condition.

     Several  computer  programs are used which can predict  depth,  velocity,
width,  and  stage for  different discharges.   A stream reach simulation is used
based on transects divided into subsections;  each  subsection is treated essen-
tially  as  a channel with  mean  depth and velocity calculated  for all  desired
discharges.  The simulation takes the form of a multidimensional matrix of the
calculated  surface area of  a  stream having  different  combinations  of depth,
velocity,  substrate, and cover.

     A  composite probability of  use can be  determined from  individual  prob-
ability of curves as part of  the application of habitat criteria for each life


                                       21

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stage on  species  of interest,  for instance, the composite probability between
depth and velocity  or  between depth, velocity, and  substrate.   The weighted
usable area  (WUA)  is a habitat index defined as the total surface area with a
certain  combination of hydraulic  conditions multiplied  by  the  composite use
for the  combined  condition.   The WUA roughly equates marginal habitat area to
an equivalent  area of preferred habitat.  Habitat-discharge relationships can
be plotted to assist in identifying critical time periods and limiting habitat
availability for given life stages or species.

     A  recent  expansion of the incremental  flow methodology has incorporated
cover into  the  model as a flow-related  variable  (Coop.  Instream Flow Service
Group,  1979a,  1980).  Both  overhead and  instream  cover  are recognized.   The
construction and  application  of probability use curves have been explained by
Bovee and Cochnauer  (1977).


Habitat Evaluation Procedures (HEP) Group

     Another type  of target  species  method is based upon the formation  of a
quantitative index  value  for assessing habitat conditions.  The U.S. Fish and
Wildlife  Service,  primarily the  Western  Energy  and  Land  Use  Team at  Ft.
Collins,  Colorado,  has  been  developing a set of Habitat Evaluation Procedures
(HEP) for about  the past five  years  in  response  to the need for standardized
quantitative methods (Raleigh,  1978).

     Sparrowe and Sparrowe (1978) and Harker et aJL  (1980) traced the develop-
ment,  of  concepts  that went  into  the formation of  the  HEP procedures through
early rating systems (Hamor,  1970; Daniel and  Lamaire,  1974),  utilization of
computer  technology (Whitaker  and  McCuen,   1976) and the  development of  line
charts graphically  representing and rating wildlife characteristics (Whitaker
et  aj. ,  1976).    The  "Missouri  System"  of  terrestrial  habitat  assessment
(Daniel   and Lamaire,  1974)   was  modified  into the  Ecological   Planning  and
Evaluation  Procedures (Hickman,  1974 cited in Harker  et  al_.  1980).   These
procedures  were  further refined  into HEP  Form 3-1101  (USFWS,  1976).   These
early procedures which are still in use in many areas were designed to provide
a uniform nationwide method  for determining impacts on fish and wildlife  from
water  development  projects.    In  practice,  ten  representative   species  that
depend  to some degree  on  the  habitat  under evaluation  are selected at  each
sample site.   The  capability of the habitat to meet the requirements of these
species  is  rated  on  a  scale  of  1 to  10 for  each species.   The sample  site
values for each habitat type are averaged to obtain a habitat type unit value.
This  unit  value  can be  multiplied by  the area of  a  particular  habitat to
obtain the number of habitat units for each habitat type.   Project impacts can
be  analyzed by  comparing "with"  and  "without"  conditions  of   a  particular
project.

     Sparrowe and  Sparrowe  (1978)  reviewed the use of  the Form  3-1101 HEP in
wildlife  habitat  evaluation  and cited the development of a prototype handbook
by Flood  et al_.  in  1977 ("A Handbook for Habitat Evaluation Procedures" USFWS
Res.  Pub. 132)  containing  a  measurable,  standard set of  habitat characteris-
tics to be used in evaluations.
                                       22

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     Raleigh  (1978)  and  Schamberger  and  Farmer  (1978)  discussed  further
modifications  and  refinements  of the  HEP  leading to  the development  of a
habitat  suitability  index  (HSI).    Habitat  parameters significant  in  the
distribution and abundance  of  fish  within an  ecoregion  are scored by the use
of response  curves  constructed by life stage.   The response curves illustrate
the relationship between  a  suitability index and a habitat parameter.   Selec-
ted habitat  parameters  are  then measured in the field and compared with habi-
tat requirements  as indicated  by the  response  curves.   The  HSI  can  then be
obtained by combining suitability indices for all evaluated species.  Multipli-
cation of the HSI by the total  area results in a habitat unit (HU) score which
can be used in computing habitat losses or comparisons.

     Draft guidelines  for determining HSI values  for  cutthroat trout (USFWS,
Western Energy and  Land Use Team, Ft.  Collins,  Colorado,  pers. comm.) illus-
trate the type and  range of habitat parameters which can be employed.   Physi-
cal habitat and life stage parameters are rated on a scale of 0.0 to 1.0 based
on the  degree to which the parameter  meets the  habitat  requirements  of the
fish  in  question (Table  3).   Habitat suitability  stream and  lake models are
available from  the  Western  Energy  and  Land  Use Team for  over 20 species of
fish  (rainbow  trout and  warm  water  species)  from the  South  Atlantic,  Great
Lakes, and Texas-Gulf  areas.   A number of reservoir  models are available for
four USFWS regions.   Models are also available for a large variety of mammals,
birds, waterfowl, and including some for amphibians and turtles.

     Revisions in the HEP have resulted in several recent publications.   These
discuss  the  justification   for  habitat  based technique  and   the  conceptual
approach  to  habitat assessment  (USFWS,  1980a), refine  the HEP procedure and
discuss how the conceptual approach can be implemented (USFWS,   1980b), provide
guidelines  for the  development  of  habitat  suitability index  models  (USFWS,
1981)  and describe  the  means  for  determining the extent of  human  uses of
wildlife and the dollar value  of their  uses  (USFWS,  1980c).    The new Habitat
Evaluation Procedures  102 ESM  (USFWS,  1980b) emphasize two major changes in
methodology  since the  1976  HEP version (USFWS,  1976).   These  are determining
HSI values using documented models  and the  analysis  of  individual evaluation
species  rather  than  habitat  types.   Selection  of  these   species  can  be
approached  in  two ways,  selection  of  those with  a  high   public  interest or
economic value,  or  selection of those that will  provide a broader ecological
perspective  of  the  area.   Project  goals will  determine the  choice.   Aquatic
handbooks are presently being developed for a number of aquatic ecoregions and
will  supplement HEP procedures by presenting regional habitat requirements for
selected species.

     The new HEP (USFWS, 1980b) are detailed and include discussion and guide-
lines  to  the  following  subjects:    applicability of  HEP, cost  estimation,
defining  the  study area,   selecting  evaluation  species,  calculating  total
habitat area, calculation of habitat suitability index, using habitat units in
habitat assessment,  trade-off  analyses,  compensation  analyses, and sampling.


NON-SALMONID STREAM METHODS

     Two procedures  are used in Kansas for non-salmonid stream project impact
evaluation.    The first  method (U.S.  Soil  Conservation Service,  1978)  rates
                                       23

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various  physical,  chemical,  and  biological  attributes  of  the habitat  on a
score of  1  to 10.  The average values obtained for each of these three groups
are used  to compute an average habitat value which can also be converted into
habitat units.   Biological  features were based upon the presence of both fish
and macroinvertebrates (Table 3).   Three evaluations  are  conducted to fully
demonstrate  the  impact of  watershed projects:  present, future  (15 yr) with
the proposed project,  and future without the proposed project.

     The  second   method  (K.  Brunson,  Kansas  Dept. of  Fish and  Game,  Pratt,
Kansas,  pers.  comm.)  designed  originally  to  evaluate  Kansas  Department  of
Transportion  bridge projects uses a somewhat  similar  rating  scheme.  Various
physical, chemical, and biological habitat features (Table 3) are rated from 0
to  1  or  0  to 5.   Total  group  scores  are  summed  to  obtain a  total  habitat
score.  This  method is  undergoing revision and  is a  good  example of simple
procedures  that  can  be  used  when  there   are few  resources  available  for
extended  surveys  (K. Brunson, pers. comm.).


SUPPLEMENTAL METHODS

     These  methods  emphasize or  concentrate  on only  a  part of  the habitat,
i.e.,   substrate, and  might  be  appropriate as part of  a  broader  survey  or
which,  with more  development,   may  have greater  application  in  the  under-
standing  of the  relationships  between  aquatic stream habitat  and watershed
activities.

     Substrate Score  correlates  highly with geometric  mean  particle size and
fish production  and has  good potential  for assessing  the quality of salmonid
spawning  and rearing habitat  (Grouse et aj.  1981).   In this technique the size
of  the  first  and second dominant materials, the degree of embeddedness of the
largest material, and  the size of the embedding material  are assigned numbers
depending  upon  their  in-category  rank.   The  sum  of  the scores  for the four
categories  represent  an  index  directly related  to  suitability  for  aquatic
life.    Lower  scores represent  poor habitat suitability  for  benthic inverte-
brates  and  vice versa.    Lotspeich  (1978) emphasized  the  rapidity  of  the
Substrate Score technique and suggested adding observations of grain shape and
grain roundness.

     Two  other  streambed  evaluation  techniques   helpful  to  biologists  in
evaluating  the  biological  significance of the  physical environment were also
described  by  Lotspeich (1978).   The first technique  involves  constructing a
size-percent  accumulation  graph  from stream gravels dry  sieved according the
the Udden-Wentworth scale to  determine median grain size and a sorting coeffi-
cient.  The resultant  curves allow biologically significant  inferences  to  be
drawn about the  substrate and the stream's nature.   For  instance,  although a
sediment  at one location might be coarser than at another, it still may not be
a desirable habitat for  fish or macroinvertebrates because of small pores and
Tow permeability due to poor  sorting.  While potential productivity appears to
increase  as grain size increases with good sorting, it is not necessarily true
that the  coarser a  sediment the higher its productivity.
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     The second  technique estimates  the  efficiency with which  a  gravel  sub-
strate sample yields water  by gravity flow.  Gravels yielding  a large amount
of water  in a  short  time have  a high pore space  efficiency,  implying large
pores, minimal  fine grains  and  high permeability.   Such sediments  would  be
representative  of  an  environment  allowing  sufficient  space   for  movement,
reareation, and waste removal.

     Shirazi et  a_L  (1979)  proposed  two  measures  in a  monitoring program  to
assess the  possible impact  of  silvicultural activities  on  salmonid spawning
habitat:    the  geometric  mean diameter (dg) of  the  spawning gravel  and  the
total area  of  spawning  gravel in a given  reach.   The dg has been recommended
as a standard  measure  for  substrate characterization  in  fisheries  work  by
Platts et a_K  (1979) who found that it relates well to permeability, porosity,
and embryo survival.

     Salmonid habitat  has been suggested  as providing  meaningful  indications
of watershed  characteristics  because of  the  capacity  of  the substrate  to
integrate many aspects  of climate,  vegetation,  soil type, land form and human
activities  (Shirazi and  Seim,   1979).   An  assessment  of   the  quality  and
quantity of spawning gravels could be made using embryo survival estimates  of
80%  or  more,  80-50%, 50-25%, and 25% or  less to  rate  corresponding dg cate-
gories of > 15, 15.25 -  10.75 mm, 10.75 to 7.0 mm, and 7.0 mm.

     Lotspeich and  Everest  (1981)  proposed using  the ratio  of the geometric
mean  diameter  and sorting coefficient as  a measure of  the  quality of riffle
gravels  for salmonid reproduction.   Preliminary relationships  between index
numbers and  survival-to-emergence salmonid  alevins indicate that  the fredle
index  (fx  =  dg/S ) is responsive  to slight  changes in gravel  composition,
survival, and variation in intragravel habitat requirements.
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                                   SECTION 6
                                  DISCUSSION

     This review represents the status of assessment methodology at a point in
time and  will quickly  become  outdated as new methods develop  and  older ones
are  revised.    It  should  be  emphasized  that  the  grouping  of the  reviewed
methods  as  expressed  here  is but  one way of  examining them;  other  logical
arrangements may become apparent with further additions and refinements to the
methodology.  It is difficult to classify the reviewed methods entirely on the
basis  of  the  type of  parameters  used  (Table  3).   The  purpose for  which  a
method was intended or the basic philosophy of its development seem to be more
important  in  determining  its place  in  some  sort  of classification  scheme.

     The methods  were  classified on the  basis of stream type (salmonid, non-
salmonid, or both combined) primarily to allow potential  users to become aware
of methodology currently  used in their own area of interest.   There is little
upon which  to  differentiate  these methods,  however,  based  on the  type  of
parameters  examined  (Table  3).    In  fact,  a  method  used  for  non-salmonid
habitat was  developed  for  salmonid streams  (USSCS,  1978).   Some  differences
between these  methods which  do  appear are:  1)  less  emphasis  on  surrounding
area,  riparian  zone,  stream  banks,  and  fish-habitat related  parameters  in
salmonid streams, 2) less emphasis on stream banks by combination methods than
salmonid  stream  methods,   and  3)  less  emphasis  on  chemical  parameters  by
salmonid stream methods.

     Validation is  one  of the most important aspects confronting management's
decision on assessment technique selection.  The difficulty of duplicating the
results  of  subjective  systems  such  as  Daniel  and  Lamaire  (1974)  has  been
expressed by Whitaker et al. (1976).  Whelan et aJL  (1979) emphasized the lack
of  comparative  studies  to  determine  if different  methods  provide  similar
results using  the  same  data base.   They  evaluated  three  wildlife  assessment
techniques using  deer,  wild turkey, and  squirrel data and  obtained consider-
able variation  in  the  results.   Whelan  et a_L  (1979) also believed  that the
system  that  incorporates the  best  available  data and that is  the  least sub-
jective should  be  the  most  accurate,  but that the question  of accuracy will
not be  resolved  until  enough systems have been compared and sufficient repli-
cated validations made.  While their investigations  concerned  wildlife assess-
ment methods,  their argument is no less valid for aquatic systems.

     Cairns (1981)  emphasized that  the  development of  a  predictive  capacity
and  a  means of validating  the accuracy of predictions are most  important  in
biological monitoring  of  aquatic ecosystems.   Similarly, the ability  to pre-
dict and  validate  the  results  of habitat alteration  is  also very  important.


                                       26

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     The highly developed  HEP  (USFWS,  1980b), a system concerned with habitat
potential is designed  for  all  stream situations, but  requires  high levels of
expertise both in the field and in data analysis and awaits the development of
regional handbooks to become fully operational.   It is also applicable only to
selected species  of  interest.   Schamberger (1979) emphasized  that  these pro-
cedures  provide  an objective  and  quantitative  estimate of the  value  of fish
and wildlife  resources.   Habitat  quality  and quantity are integrated into a
single  index  value or habitat  unit  which  can be used  in  comparisons  between
sites or ideal  conditions.

     Farmer  (1978)  believed  that while  the methods  are  not  perfect,  they
provide an objective tool  for assessing the effects of water resource develop-
ment.   Hickman and McMahon (1979)  suggested they could be used for endangered
species  management  by  evaluating   impacts  of  reservoir  construction  to
endangered species management  by  evaluating impacts of reservoir construction
to endangered  fish habitat  prior  to impoundment and comparing  the rating to
predicted post  impoundment  results.   Identification  of  impacted  parameters
could result in  project modifications.   The procedures would  also  be  of help
in selecting  potential  release sites  for endangered species.   Harker et al.
(1980) considered  these methods as the probable state-of-the-art  in  terms of
their approach in  developing criteria  indicating the relationship between the
proportions  of   different   habitats  and  their  relative   contribution  toward
meeting species  requirements.

     Trial   et  alI. (1980)  found that while  HEP was  useful  for  planning and
mitigation for large projects, they were less valuable for small or short-term
projects.  Trial  and Stanley (1980) applied HEP using HSI  values based on both
physical measurements and  the  ratio  of observed to maximum populations in the
East Branch of Presque Isle Stream in Maine and found the values of little use
in predicting populations  if they  were based on inadequate information.

     Stalnaker  (1979a)  believed   that  there  is   evidence  pointing  to  the
validity and  utility  of   the  Instream  Flow Group  methodology on  trout and
salmon  streams.   Validation of this  method was  started  on various  types of
streams  in  Wyoming,  Iowa,  and  Oregon  (Coop.  Instream  Flow  Group,  1979b).

     Many of the  methods  result in the development of an index value.   Daniel
and Lamaire (1974) have expressed  the advantages of such values in providing a
total  resource rating  and  a basis for determining  mitigation  needs.   The use
of  such a  system  also  simplifies  comparisons  between  stations, areas  of
different times.

     A  number  of methods  result  in  a rating of 1  to 10 or 0  to  1 (Seehorn,
1970;  Eiserman et  a_K ,  1975; Soil  Conservation Service,  1977,  1978).   Others
result  in a  Habitat  Quality Index (HQI) (Binns and  Eiserman,  1979), Weighted
Usable  Area (WUA)  (Stalnaker,  1978,  1979a,  1979b),  or  Habitat  Suitability
Index (HSI) (USFWS,  1980a).   Many of these values  can be converted to habitat
units,  an  area  rating which  can easily  be  used for comparative purposes.
Dunham and  Collotzi  (1975) cautioned that while habitat  ratings were  appeal-
ing,  they do not consider  productivity levels,  stream access,  angling success
and similar factors.
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     The  results  of a  survey by the author (40  state  agencies,  pers.  comm.)
indicate that very few state  agencies have developed or used a habitat assess-
ment  technique specifically  for  non-point  source  pollution  investigations,
even  though  a majority  of those queried did  acknowledge  the  desirability of
such  techniques.   The  States  of Oregon and  Washington  both  use techniques
based  on  channel  stability (Pfankuch,  1975) with additional  biotic variables
(Rickert et  a\. ,  1978;  Washington Dept. Ecology,  pers.  comm.).   The State of
Wisconsin uses a  biotic index developed by Hilsenhoff (1977) for NFS investi-
gations;  this  system,  however,  is not  based  on  physical  parameters.   North
Carolina  (Lenat  et al. ,  1979) uses  a  similar non-physical  stream assessment
system  based on a  modification  of Hilsenhoff (1977).   South  Dakota (Glover,
1975)  used   the  method  of Herrington  and  Dunham (1967) to  inventory  trout
habitats  in  watersheds  affected  by  road  and railroad  construction,  timber
management,   agricultural practices, mining,  and flood control projects.

     Methods are currently being revised within the Bureau of Land Management
with  the  suggestion that  it  may be  advantageous  to use  handbooks that  would
provide guidelines  and  options for information gathering,  leaving the  choice
of  the most  suitable   method  up  to  the  biologist.    Discussions are  also
continuing  between  this  agency, the  U.S.   Forest Service,  and  the  Oregon
Department of Fish and Wildlife concerning an  agreement to use the same inven-
tory procedures (N. Armantrout, USBLM, Portland, Oregon, pers.  comm.).

     Vannote et  al_.  (1980)  proposed  that physical  variables  within a  river
system  are present  in  a continuous gradient and  that  community structure and
function  adjust  to changes  in a  number of geomorphic,  physical, and  biotic
variables.   Therefore,  for  an  assessment  technique  to be  effective  for
comparative  purposes, it may  be necessary to use  it in stream reaches that are
at the  same  level of response to  these variables.
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                                  REFERENCES

Binns, N.  A.   1978.   Evaluation of habitat  quality in Wyoming trout  streams.
     p.  221-242.   In:   Classification,  Inventory,  and Analysis  of Fish  and
     Wildlife  Habitat.   Proc.  Nat.   Symp.   U.S.  Fish and Wildl.  Ser. ,  FWS/
     OBS-78/76.

Binns,  N.  A.  and F.  M.  Eiserman.    1979.   Quantification  of  fluvial  trout
     habitat in Wyoming.  Trans. Am.  Fish. Soc. 108:215-228.

Bovee, K.  D.  and  T.  Cochnauer.  1977.  Development and evaluation of  weighted
     criteria, probability-of-use curves  for instream  flow assessments:  U.S.
     Fish and Wildl.  Ser., FWS/OBS-77/63.

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