EPA 660/3-73 017
February 1974
                                 Ecological Research Series
  Pollution  Effects on
  Adult Steelhead  Migration
  in  the Snake River
                                  I
                                  55
                                  \
SEZ
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                               Office of Research and Development
                               U.S. Environmental Protection Agency
                               Washington. DC 20460

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            RESEARCH REPORTING SERIES
Research reports of the  Office  of  Research  and
Monitoring,  Environmental Protection Agency, have
been grouped into five series.  These  five  broad
categories  were established to facilitate further
development  and  application   of   environmental
technology.   Elimination  of traditional grouping
was  consciously  planned  to  foster   technology
transfer   and  a  maximum  interface  in  related
fields.  The five series are:

   1.  Environmental Health Effects Research
   2.  Environmental Protection Technology
   3.  Ecological Research
   1.  Environmental Monitoring
   5.  socioeconomic Environmental studies

This report has been assigned  to  the  ECOLOGICAL
RESEARCH  series.   This series describes research
on the effects of pollution on humans,  plant  and
animal   species,  and  materials.   Problems  are
assessed   for   their   long-   and    short-term
influences.    investigations  include  formation,
transport, and pathway studies  to  determine  the
fate  of  pollutants and their effects.  This work
provides the technical basis for setting standards
to  minimize   undesirable   changes   in   living
organisms   in   the   aquatic,   terrestrial  and
atmospheric environments.

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                                                 EPA-660/3-73-017
                                                 February 1974
        POLLUTION EFFECTS ON ADULT STEELHEAD MIGRATION

                      IN THE SNAKE RIVER
                               by

                      C. Michael Falter
                        Rudy  R.  Ringe
                     College  of  Forestry
                     University  of Idaho
                     Moscow,  Idaho  83843
                      Project 18050DMB
                   Program Element 1B1021
                       Project Officer
                      Dr.  Gary  Chapman
               Western Fish Toxicology Station
                 1350 S. E.  Goodnight Ave.
                 Corvallis,  Oregon  97330
                       Prepared For
            OFFICE OF RESEARCH AND DEVELOPMENT
          U.S. ENVIRONMENTAL PROTECTION AGENCY
                 WASHINGTON, D.C.  20460
For wle by the Superintendent of Documents, U.S. Government Printing Office, Washington, D.C. 20402 - Price $1.80

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                                 ABSTRACT

A three-year field study was conducted from 1969-1971 to assess the
relationship of Kraft mill effluent and pre-impoundment limnological
conditions to adult steelhead trout (Salmo gairdneri Richardson) behavior
in the Snake River near Lewiston, Idaho.  Steelhead were tagged with an
ultrasonic transmitter and followed through a 25 km section of the pro-
posed Lower Granite Reservoir.  Limnological parameters were measured in
the Clearwater and Snake Rivers and then compared with fish behavior.
Mixing patterns of the Clearwater River with the Snake River were also
assessed.

Mean water quality changes in the Snake River as a result of pollution
inputs in the Lewiston area are very subtle.  In terms of toxic effects
from chemical loading, the Snake River water quality is not greatly
altered except in the immediate area of pollution input; we did not
observe steelhead avoidance of these localized problem areas.

No significant correlation could be made between any chemical water
quality parameter and steelhead behavior.  However, as the temperature
dropped below 15 C fish movement slowed, fish generally stopped moving
at night, and resting periods increased in length and number.  Steel-
head generally showed a preference to move in water with off-bottom
current velocities of 0.2 to 0.5 m/sec and showed a definite pattern of
crossover and resting points in the river.

This report was submitted in fulfillment of Project Number 18050 DMB
under the sponsorship of the Environmental Protection Agency.  Work
was completed as of December, 1971.
                                  ii

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                           CONTENTS




                                                                   Page




Abstract                                                            H




List of Figures                                                     iv




List of Tables                                                      vi




Acknowledgments                                                     v^




Sections




I      Conclusions                                                   ^




II     Recommendations                                               2




III    Introduction                                                  3




TV     Experimental Design                                          ^0




V      Methods                                                      ^2




VI     Results




            Mixing Patterns                                         ^5




            Water Quality                                           24




            Steelhead Migration Paths and Behavior                  27




VII    Discussion                                                   55




VIII   Literature Cited                                             57




IX     Appendix                                                     59
                                  ill

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                            FIGURES

No.                                                                Page

1    Lower Snake River, Idaho-Washington                             4

2    Snake River flow volume below the Snake-Clearwater              6
     River confluence, 1969-71

3    Snake River temperatures below the Snake-Clearwater             7
     River confluence, 1969-71

4    Lower Snake River study area with pollution sources             8
     and major river rapids

5    Schematic breakdown of free-flowing vs post-impoundment        11
     steelhead and water quality comparisons in the Lower
     Granite pool area

6    Temperature (C) profiles 0.2 km downstream from the            16
     Snake-Clearwater confluence

7    Total dissolved solids (mg/1) profiles 0.2 km downstream       17
     from the Snake-Clearwater confluence

8    Temperature (C) profiles 2.4 km downstream from the            18
     Snake-Clearwater confluence

9    Total dissolved solids (mg/1) profiles 2.4 km downstream       19
     from the Snake-Clearwater confluence

10   Temperature (C) profiles 6.1 km downstream from the            20
     Snake-Clearwater confluence

11   Total dissolved solids (mg/1) profiles 6.1 km downstream       21
     from the Snake-Clearwater confluence

12   Temperature (C) profiles 10.6 km downstream from the           22
     Snake-Clearwater confluence

13   Total dissolved solids (mg/1) profiles 10.6 km down-           23
     stream from the Snake-Clearwater confluence

14   Average cross-channel patterns of water quality                25
     parameters in the Snake and Clearwater Rivers during
     adult steelhead migration, 1969, 1970, and 1971
                                  iv

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                     FIGURES - (Continued)

No.                                                                Page

15   Adult steelhead migration paths in the Snake River,            30
     Lower Granite pool area, 1969

16   Adult steelhead migration paths in the Snake River,            33
     Lower Granite pool area, 1970

17   Adult steelhead migration paths in the Snake River,            37
     Lower Granite pool area, 1971

18   Distribution of steelhead in the Snake River, 1969-71.         43
     Width of bars expresses the percent of fish in each
     third of the river width

19   Principal cross-over and resting areas preferred by            46
     sonic-tagged steelhead migrating through the Lower
     Granite pool area, 1969-71

20   Observed position of steelhead 0.2, 1.6, and 10.6 km           47
     below the Snake-Clearwater confluence in relation to
     current velocity 1 m off the bottom, 1969-71

21   Steelhead migration rate (total and net km/day) and/or         51
     reversals per day compared to river temperature (C).
     Averaged over 1969, 1970, and 1971

22   Steelhead migration rate (total and net km/day) and/or         52
     reversals per day compared to Snake River flow.
     Averaged over 1969, 1970, and 1971

23   Steelhead migration rate (total and net km/day) and/or         53
     reversals per day compared to barometric pressure.
     Averaged over 1969, 1970, and 1971

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                            TABLES

No.

1    Characteristics of the summer steelhead runs and
     fish tracked in the lower Snake River, 1969-71

2    Ranking of independent variables according to their            49
     apparent relation to steelhead movement.  Low ranking
     indicates early selection in the regression equation,
     hence higher multiple correlation

3    Comparison of mean net upstream movement (km/day)              54
     above and below the Snake-Clearwater confluence.
     Only fish with net upstream movement and tracks of
     less than six days duration are represented
                                vt

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                        ACKNOWLEDGMENTS

The authors wish to thank Drs. Don Chapman and Ted Bjornn of the Idaho
Cooperative Fishery Unit for their counsel throughout this study.

Mr. Wes Ebel, National Marine Fisheries Service, and his supporting
staff permitted the use of their adult fish migrant trapping facilities
at Ice Harbor Dam.

We thank Dr. Richard Wallace, fishery scientist at the University of
Idaho, for his help and advice on steelhead behavior in 1969 and 1970.

The support of the Office of Research and Monitoring, Environmental
Protection Agency, especially the help provided by Project Officers
Drs. Gerry Bouck and Gary Chapman is sincerely appreciated.
                                  vti

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                           SECTION I

                          CONCLUSIONS

1.  The Snake River shows only slight deterioration of water quality
    from the pollution load it receives in the Lewiston area.

2.  Mixing of the Snake and Clearwater River flows is inversely related
    to flow volume.

3.  We were unable to relate steelhead behavior to pollution inputs in
    the Lewiston area under free-flowing conditions.

4.  River temperature is positively correlated with steelhead travel
    rates.

5.  Wide variations in steelhead behavior were noted from fish to fish
    and from year to year.

6.  Above confluence steelhead behavior is not significantly different
    than below confluence behavior.

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                          SECTION II

                        RECOMMENDATIONS

Water quality parameters should be measured after Lower Granite Dam is
closed to show effects of localized pollution problem areas which might
result from poor dispersion of wastes in the reservoir.

Adult steelhead migration behavior through the reservoir after its com-
pletion in 1975 should be studied for comparison to the altered post-
impoundment limnology of the "run-of-river" reservoir.

Lay-over and over-wintering areas for steelhead should be described to
determine whether Dworshak release temperature and flow can affect steel-
head behavior in the upper areas of Lower Granite pool.

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                          SECTION III

                         INTRODUCTION

This report summarizes the three-year pre-impoundment phase of a proposed
two-part study relating adult summer steelhead migrational behavior to
water quality changes associated with the impoundment of Lower Granite
Dam on the lower Snake River, Idaho-Washington.  Lower Granite Dam is a
low-head dam at river kilometer (RK) 172 currently under construction
and scheduled for completion in 1975.  It will convert a free-flowing
stretch of the Snake River that now receives urban sewage and Kraft
pulping mill wastes to an impoundment.

The chief objective of the two-part study is to assess migrational
behavior of adult summer steelhead before and after limnological condi-
tions in the lower Snake River are altered by filling of Lower Granite
Reservoir.  The study situation offers an opportunity to observe organ-
ism response to changing environmental conditions in an uncontrolled
field situation.  We then propose to relate pre- and post-impoundment
behavior with pre- and post-limnology of the lower Snake River study
section.  This comparison will help describe the impact of Lower Granite
Dam on the Snake and Clearwater River steelhead runs.  In the first
study phase, reported here, we described steelhead travel paths, migra-
tion rates, and other general characteristics of upstream movement
during peak migration times in 1969, 1970, and 1971.

STUDY AREA

The Snake River flows north out of Hell's Canyon for 160 km, then turns
west at RK 224 to join the Columbia River in southeastern Washington
(Figure 1).  The two largest tributaries of the lower Snake are the
Salmon and the Clearwater Rivers at RK 290 and RK 225, respectively.
Asotin Creek at RK 233 and Alpowa Creek at RK 211 also flow into the
Snake River in the study area.

Width of the Snake River in the study area ranged from 140 to 260 m
(200 m average).  Stream depth was 2.0 to 8.5 m (4.0 m average) during
the study period.  Mean minimum flows in the study area approximated
570 mVsec, occurring near September 1 (U.S. Geological Survey 1970).
Mean maximum flows approximated 5700 m3/sec around June 1.  Hydropower
peaking at Hell's Canyon and Brownlee Dams on the middle Snake River
(RK 397 and RK 459) cause daily flow fluctuations of up to 150 m3/sec
during summer months.

Widely spaced rapids separate long pools of moderate velocity and great-
er depth in the study area.  Rubble 8 to 20 cm in diameter dominates
the substrate, and many sandbars are formed in the study area by annual
high water.

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                                                               Lower
                                                               Granite
                                                               Dam (U.C.)
Figure  1.   Lower  Snake River,  Idaho-Washington.

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The Lower Granite pool will extend from Lower Granite Dam upstream 59 km
on the Snake and 8 km on the Clearwater River.  Elevation of the study
section ranges from 206 meters to 216 meters above mean sea level with
a gradient of 0.60 m/km.

Downstream from the Clearwater River, the Snake River will by 1975,  be
a contiguous series of low-head impoundments formed by Ice Harbor Dam
(RK 16), Lower Monumental Dam (RK 68), Little Goose Dam (RK 113), and
the incomplete Lower Granite Dam (RK 174).  Asotin Dam is currently an
authorized but unfunded low-head project at RK 235.

The Snake River flows into the Lower Granite pool area a turbulent,
geologically youthful stream.  Chemically, however, it shows the inten-
sive changes it has sustained in south Idaho from irrigation, food pro-
cessing, urban, and cattle feedlot discharges.  The three upstream im-
poundments at RK 397, RK 439, and RK 459 (Hell's Canyon, Oxbow, and
Brownlee) slightly improve the chemical quality of the Snake River
flowing out of south Idaho before reaching the Lewiston area.  Snake
River flows and temperatures for the three pre-impoundment study years
(1969, 1970, and 1971) show control by these existing upstream storage
projects (Figures 2 and 3).  The Clearwater River was unregulated for
the study years, except for the small Washington Water Power Dam at
Clearwater RK 11 and Dworshak Dam on the North Fork of the Clearwater
River.  Gates at Dworshak Dam were closed on September 27, 1971, causing
abrupt flow decreases in the Clearwater.

Several significant waste water flows enter this area (Figure 4):

1.  The cities of Lewiston-Clarkston with a combined population of
    33,000 contribute 10 x 103 m3/day of primary treated sewage, and
    2.5 x 103 m3/day of secondary treated sewage (Miller 1972).  All
    sewage will be receiving secondary treatment by Lower Granite pool
    filling in 1975.  Asotin, south of Lewiston-Clarkston, contributes
    an additional small amount of primary treated sewage.

2.  Potlatch Forests, Incorporated, of Lewiston operates a Kraft process
    pulping operation which discharges 121.1 x 103 m3/day of primary
    treated wastes into the Snake River immediately above the Clearwater
    River confluence.  These wastes contain 40.9 x 103 kg/day 5-day BOD,
    142.4 x 103 kg/day COD, 25.4 x 103 kg/day S04, and 45.4 kg/day Na.
    Potlatch Forests plans to initiate secondary treatment with an
    aerated lagoon by 1975.  Because it will still contain high COD and
    dissolved materials, the effluent will contribute to the physical
    and chemical changes when Lower Granite Dam impounds the free-flow-
    ing stream.  Increased algal and bacterial growth, as well as
    slightly increased temperatures and reduced dissolved oxygen in the
    backwater areas, are expected after the river slows (U.S. Public
    Health Service 1964; Falter and Funk 1973).

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~
             240
             210
             180
   150
O
o
? 120
CO
U.
O
*> 9O
              60
             30
                  \
                                                                                 Legend
                  7  21
                   14 26
                   Jon.
              4   18  |4   18   I   15  296  20 13   17  I   15 295  19
                II  25  II  25  8  22 I   13  27  10  241  8  22 I  12 26
                Feb.    Mor.     Apr     May    Jim.     Jul     Aug.
2  16 307  21  |4   18
  9  231   14 28  II  25
  S»pt     Oct.
2  16  30
  9 23
   Dec
        Figure 2.   Snake River flow volume below the Snake  - Clearwater  confluence, 1969-71.

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  •
  a.
  E
      24 r
      16
12
                                                      O
                                                    o  a A  a
                                                   a  o   aoa
                                                                    Legend
                                                                     A  =  1969
                                                                     a  =  1970
                                                                     O  =  1971
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                                                              A
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                                                                                     AA
          aa
                 Tit
                                                       K  16  307 2p|4  182  16^
                                                        9  23|  14  28  II  251 9  23
                                                                             Dec
7  21 |4  18 14  18   I  15 296  20  |3  17   I  15  29 5  19
 14  28  II  25  II 25  8  22 I  13 27.  10 241 8 22 I 12 26|
 Jon  I  Feb. |  Mor   |  Apr  j May  I  Jun     Jul  | Aug
                                                               Sept I   Oct.  |  Nov.
Figure 3.  Snake River temperatures below the  Snake-Clearwater confluence, 1969-71.

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Lower Gronite Dam
                                                                        Washington
                                                                        Water Power
                                                                             Dam
 Pollution Sources
      Urban Sewage
      Food Processing Wastes
O—*  Kraft  Pulping Wastes
S55SS&  Cattle Feed Lots
—   Rapids
 0
 i
                      1C
         Kilometers
 •Figure  4.   Lower  Snake  River study area with pollution sources  and
              major  river  rapids.
                                          8

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    Kraft pulping effluent adversely affects fish and other aquatic life
    (Stammer 1958; Whitney and Spindler 1959; Webb 1958; and Williams
    1969).  The reduced velocities and turbulence in the reservoir area
    can compound these detrimental effects by allowing concentrations
    of effluent to remain undispersed, thus concentrating waste assimi-
    lation into a smaller area (U.S. Public Health Service 1964).

3.  Runoff from cattle feedlots and winter cattle feeding operations
    above Lewiston near the Snake River contributes significant amounts
    of nitrogen loading (Miller 1972).

Steelhead trout (Salmo fiairdneri Richardson) in the Snake River are a
major fish resource with 60,000 to 100,000 adult steelhead annually
migrating through the Lower Granite pool area to upstream spawning
areas in Idaho and Oregon.  The run peaks in September-early October at
a time of minimal water quality (Oregon Fish Commission 1967).  Upstream
migrating fish are confronted with lowest flows, highest concentrations
of pollutants, lowest oxygen concentrations, and highest temperatures
of the year.  Chinook salmon runs through the area have averaged 77,000
. . . 36,000 spring chinook, 24,000 summer chinook, and 17,000 fall
chinook (U.S. Corps of Engineers 1970).  Summer steelhead runs stand to
be affected most from a deterioration of water quality because of their
timing.

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                          SECTION IV

                      EXPERIMENTAL DESIGN

The fundamental working hypothesis as posed in the initial proposal in
1967 was:   (1) "Lower Granite Dam has no effect upon the migrational
behavior of adult steelhead trout."  Hypothesis (1) can only be tested
in the post-impoundment phase by study of steelhead behavior through
the slack water of Lower Granite Reservoir.

Comparison with pre-impoundment behavior (the control phase) should
delineate impoundment effects upon steelhead migration.  Because of the
addition of dams in the Snake and Clearwater systems, and changes in
amounts and treatments of industrial and sewage effluents into the pool
area since 1967, there is really no true "control" to this pre-post
impoundment comparison.  The best available "control" or approximation
to it, is the Lower Granite pool area before impoundment.

We will reject H^ after impoundment if:

1.  Steelhead travel time through the study area increases or decreases.

2.  General migration pathways significantly change.

3.  General pathways after impoundment are not significantly different,
    but avoidance reactions or temporary stoppages occur at specific
    points due to factors such as:

    a.  low dissolved oxygen

    b.  high Kraft mill effluent

    c.  high or low pH

    d.  thermal layering

    e.  presence of hydrogen sulfide

    f.  high ammonia levels

    g.  reverse flows at the Snake-Clearwater confluence

4.  Timing of the steelhead run changes, i.e. the peak of the run shifts
    forward or backward in time.

If we reject H, for one or more of the above reasons, then the a'ltered
steelhead behavior is a result of impoundment or altered water quality,
or a combination of both.  We will compare migration patterns as de-
tailed in Figure 5.
                                  10

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                   Free-flowing Conditions
                    10km-       —,
                     5km

         Cl*arworer river
                    5km.
                    10km.
                   15kmJ
                          SNAKI
                          RIVER
                            Flow
                             Post-impoundment
                          10km-      —,
Above pollution            5km

                 Clearwater river
Below pollution
SNAKE
RIVER
                          JO km- I
                                  mow
                          15kml      —
           Impounded
           above pollution
 Impounded
" below pollution
Figure 5.  Schematic breakdown of  free-flowing vs post—impoundment  steelhead and water quality
           comparisons in  the Lower Granite pool area.

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                           SECTION V

                            METHODS

 MIXING PATTERNS

 Pre-impoundment mixing patterns of the Snake and Clearwater Rivers down-
 stream from their confluence were established to compare with migration
 patterns  of adult steelhead.  Samples at three points across the river
 could  not adequately  describe mixing patterns of these two large river
 flows  in  sufficient detail for comparison with steelhead movements.  We
 selected  the parameters  of temperature and total dissolved solids to
 define mixing patterns of the Snake and Clearwater Rivers below their
 confluence for two reasons:  (1) The two streams' temperature regimens
 are usually out of phase, hence degree of mixing should be apparent,
 and  (2) Total dissolved  solids levels of the two streams are always
 dissimilar, with no overlap throughout the year.

 Cross-sectional profiles of temperature and total dissolved solids were
 constructed from vertical profiles taken at intervals across the Snake
 River  at  four points  . . . 0.2 km, 2.4 km, 6.1 km, and 10.6 km below
 the Snake-Clearwater  confluence in 1970 and early 1971.  We used a
 digital thermistor (Digetec, United Systems, Inc.) with an instrument
 accuracy  of ± 0,15 C.  Total dissolved solids were measured with a
 conductivity meter (Hach Chemical Company) and remote 12 m lead.  Verti-
 cal temperature and total dissolved solids profiles were taken at 18 m
 intervals across the  stream.  At each point, the boat was held steady
 in the  river current  by  two 30 kg anchors.

We plotted the temperature and IDS series as cross-sectional profile
maps from which we assessed general longitudinal and seasonal trends in
mixing  of the Snake River, Clearwater River, and Kraft effluent.

To obtain indices of mixing for seasonal comparison at sampling stations,
computerized least-squares analyses of variance were run on selected
temperature and TDS profiles which represented seasonal changes in mix-
ing at  each station.  The least-squares analysis of variance separated
variation in temperature and TDS within the profile into:  (1) a compo-
nent which resulted from changes in temperature and TDS with depth; and
 (2) a component caused by changes in temperature and TDS across the
width of the stream.  The F-values and mean squares for each station
and seasonal pattern served as indices of mixing for seasonal comparison.

Duncan's Multiple Range Test was used to test for significant differences
between mean temperatures and between mean TDS of adjacent width loca-
tions in cross-sectional profiles.  These tests disclosed the locations
and widths of mixing interfaces for each station and season.
                                  12

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We determined vertical profiles of current velocities with a cable-
suspended Ott current meter, Model C-31 (Epic, Inc.) operated from a
double-anchored boat.  Velocities were calculated over the range of
river flows encountered from July-December.

WATER QUALITY

Chemical aspects of the Snake and Clearwater Rivers were analysed ac-
cording to APHA (1965) and EPA (1969).  Total hardness, ammonia, and
tannins were analysed by the Hach technique (Hach Chemical Company) and
the Pearl-Benson Index as standardized in the pulp and paper industry
(Barnes et al. 1963).  The Pearl-Benson or nitroso technique was devel-
oped for detection of sulfite waste liquors, but it also indicates the
presence of lignin sulfonate compounds in Kraft liquors.  Total volatile
solids of the water were determined gravimetrically by ashing three to
six replicated samples.

We conducted water sampling intermittently from July through December
of 1969, September through November of 1970, and July through November
of 1971.  Sampling was restricted to peak months of adult summer steel-
head migration in the study area.  A grass fire on July 27, 1970, at
our field tracking facility destroyed much of our water sampling and
analysis equipment, thus setting back water analysis until September of
that year.  We established stations on the two rivers in order to physi-
cally and chemically measure incoming river flows into the study area,
mixing patterns of water quality parameters at various distances below
the Snake-Clearwater confluence, and in the total Snake flow leaving
the study area after complete mixing.

FISH TRACKING

Test steelhead were picked up in all three track years from the National
Marine Fishery Service trapping facilities at Ice Harbor Dam (RK 16).
We netted fish from the top of the fish ladder, anesthetized them with
MS-222 (Tricaine methanesulfonate), and carried them in canvas bags  to
a waiting tank truck on top of the dam.  They were then trucked upstream
to the Snake River release point 15 km downstream from the Snake-Clear-
water confluence.  Ice, recirculation, and compressed oxygen were used
to maintain the fish during the three to four hour transport.  A maximum
of six fish were hauled per trip in the 750 liter tank.

On arrival at the release point, we again anesthetized the fish prior
to removal from the tank, measured total length, and inserted an ultra-
sonic transmitter into the fish stomachs via a tube and plunger assembly.

These sonic tags were the standard sonic transmitters SR69 and SR69A
manufactured by Smith-Root, Inc., Seattle.  The two types of tags used
were cylindrical, 6.4 cm and 8.9 cm long, 1.4 and 1.9 cm in diameter,
                                 13

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 and  9  and 42  g respectively.  Transmission  life was approximately 20
 days for the  smaller  tag  and  approximately  45  days for  the  larger tag
 at 70  KHz (i"  1.5 KHz).  The smaller  tags were  used early in the season
 when we could expect  fish to  pass through the  study area within 15 days;
 the  large tags were used  later  in the  season when the fish  were tracked
 up to  six weeks.  Different pulse rates were used so that more than one
 fish could be tracked at  a time.  Ultrasonic signals were picked up in
 the water by  a hand-held  directional hydrophone (Smith-Root, Inc.).  The
 hydrophone supplied input  to  a  battery-powered TA-60 Sonic  Receiver
 (Smith-Root,  Inc.) for conversion to an audible pulse.

 We held tagged fish in 1m x 1m  x 2m  nylon mesh live boxes in water 1-1.5
 m deep 12 to  48 hours before  release into the Snake River.  No discern-
 ible differences in fish behavior or movement were observed between
 different holding times,,   Fish  were  released as men and equipment became
 available to  track fish.   Early in the tracking program, two boats each
 with two men  tracked  a single fish;  with increased tracking proficiency
 one man in a  single boat  could  take  a  lateral bearing on a  fish, then
 rapidly move  behind the fish  and take  another bearing for an effective
 triangulation of position.  Since most fish were 15-25 m from shore,
 estimated distances from  shore  were  checked by throwing a weighted,
 marked line to shore.  We  logged a fish's position in relation to per-
 manent shoreline markers  (power poles, trees, houses, rock  points, and
 artificial markers erected in the absence of other permanent natural
 markers).

 In the first  track year, we attempted  to triangulate fish positions at
 chemical stations by  pairs of portable hydrophones situated on shore a
 known distance apart, and  zeroed on  a  compass bearing.  This proved too
 time-consuming for use on  fast  moving  fish  and no more accurate than
 position fixes by boat.   In subsequent years, all position  fixing was
 done from boats.

 Early in the  track seasons (or  at any  other times if a fish moved con-
 tinuously) we tracked the  fish  day and night.  During times of little
 movement of fish, we  checked  fish locations only periodically through-
 out the day.  We followed  fish  paths with particular care near our
 water quality stations and near the  Snake-Clearwater confluence.

 Night tracking was conducted just as day tracking but with  the use of
 hand-held airplane landing lights to locate shoreline markers.  Care
was taken to  keep the light from flashing over a fish's position.

During tracks, we maintained continuous records of wind velocity, baro-
metric pressure, cloud cover, and maximum-minimum air temperature.
 River flow volumes were obtained from USGS records.
                                  14

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                          SECTION VI

                            RESULTS

Temperature patterns of the two streams were similar from year to year
throughout the study.  Midsummer Clearwater River temperatures exceeded
Snake River temperatures before temperature equalization in late August.
Maximal annual Snake River temperatures (^25 C) coincided with minimal
annual Snake River flows 0&18,000 cfs) in late August.  The Clearwater
River cooled more rapidly in September than the Snake and remained at
lower temperatures through winter.

Snake and Clearwater River flows decreased to annual lows in late August
then increased moderately through December (Figure 2).  The Clearwater
River contributed its greatest percentage to the combined flow in late
November.

Total dissolved solids (TDS) in the Snake River were substantially
higher than TDS in the Clearwater River throughout the study (Figures
A-7a to A-7c).  TDS in both streams attained an annual high in November,
probably due to surface flushing of accumulated debris after extended
periods of little rainfall.

MIXING PATTERNS

0.2 Km Below the Snake-Clearwater Confluence

At 0.2 km below the confluence, mixing took place at a swirling inter-
face of the Snake and Clearwater flows (Figures 6 and 7).  The location
of the interface in the stream width depended on the magnitude and
proportion of the Snake and Clearwater River flows.  An increase in the
proportion of Snake River water to the total flow forced the interface
toward the north or Clearwater side.

The mixing interface, as indicated by temperature, occupied a 55 m
portion of the stream cross-section in early August but narrowed to a
width of 40 m and moved closer to the north shore in November and
January (Figure 6).  Kraft effluent was always contained between the
two river flows at this station.  In early August, Kraft effluent was
a vertical column of warmer water at 55 m and in November it was a warm
surface flow between 55 m and 75 m.  Kraft effluent appeared as a ver-
tical column of water of high TDS at 110 m across the channel in the
late August profile (Figure 7) but was undetectable at any other time
or at any of the downstream profiles.
                                   IS

-------
North
shore
     0
50
METERS
 100
150
South
shore
 200
                                   North
                                   shore
                                                     9-
                                               50
METERS
  100
150
South
shore
 200
                                                               24 August 1970
                18 November 1970                                 13 January 1971

     Figure 6.  Temperature (C) profiles 0.2 km downstream from the Snake-Clearwater confluence,

-------
North
shore
North
shore
0	50
METERS
  100
South
shore
                                                               24 August 1970
                 18 November 1970
            13 January 1971
      Figure 7.  Total dissolved solids (mg/1) profiles 0.2 km downstream from the Snake-Clearwater
                 confluence.

-------
oo
                     North                         Sout-h
                     shore          METERS          shore
                     Q	  50       100     150     200
                   Or
                 e
                          13 August  1970
                          10  October  1970
North                        South
shore         METERS         shore
0       50      100    150     200
      24 August 1970
      14 January 1971
                   Figure  8.   Temperature (C)  profiles 2.4 km downstream from the Snake-Clearwater
                               confluence.

-------
    North
    shore
    0       50
        METERS
           100
      South
      shore
150     200
w
Q 3
92
**s

£3
           13  August  1970
10 October 1970
North
shore
 0.	5Q
METERS
 100
      South
      shore
150     200
                                             24 August  1970
                                                      14 January 1971
   Figure 9.  Total dissolved solids  (mg/1)  profiles  2.4  km downstream from the Snake-Clearwater
              confluence.

-------
    North
    shore
     METERS
100	150
                                             200
South
shore
250
     r
w
Q
   7
w  2
Q
                        13 August 1970
                     25 August 1970
                      10 October 1970

    Figure  10.   Temperature (C)  profiles 6.1 km downstream from the
                Snake-Clearwater confluence.
                                20

-------
    North
    shore
             50
    METERS
100      150
                                           200
 South
 shore
250
 B
   2
w 2
Q
                       13 August 1970
  0
                         25  August 1970
3
K  2
w
                        10 October 1970

    Figure 11.  Total dissolved solids (mg/1) profiles 6.1 km downstream
                from the Snake-Clearwater confluence.
                                 21

-------
    North                    South
    shore       METERS       shore
    0       50     100      150
   0
w
o
\^
           11 August 1970
           17 November 1970
North
shore
0
   METERS
50     100
 South
 shore
150
      25 August  1970
       8 January 1971
   Figure 12.  Temperature  (C) profiles 10.6 km downstream from the
               Snake-Clearwater confluence.
                                  22

-------
    North                    South  North                    South

    shore       METERS       shore  shore        METERS       shore

    0        50     100	150      Q	50      100      150
w
Q
  4




  5





  0




  1





E2



£ 3




  4




  5
w
p
           11  August  1970
25 August 1970
           17 November  1970
8 January 1971
    Figure 13.   Total dissolved solids  (mg/1) profiles 10.6 km down-

                stream from the Snake-Clearwater confluence.
                                 23

-------
 2.4  Km Below  the Snake-Clearwater  Confluence

 The  mixing  interface  occupied a  130 m section in midstream in early
 August (Figures 8 and 9).   In early August, significant temperature
 change (P < .01) occurred across the entire stream width except for a
 70 m section  in midstream.  The  interface widened to a 130 m broken
 pattern at  midstream  in October but in January the interface narrowed
 to 90  m and approached the  north shore.

 6.1  Km Below  the Snake-Clearwater  Confluence

 The  portion of the cross-section from 165 m to the south shore was ex-
 cluded from analysis  since  this  is a slough area which is separated from
 the  main stream flow.

 The  mixing  interface, as indicated by temperature, occupied most of the
 stream width  in early August and October but occurred only in a 40 m
 section near  the south shore in  late August when temperatures of the
 two  rivers  equalized  (Figure 10).  Temperature variation across the
 stream width was greatest in early August, decreased to the seasonal
 low  in late August, and increased  slightly in October.

 No significant variation in TDS across the stream width occurred at this
 station during the study (Figure 11).

 10.6 Km Below the Snake-Clearwater Confluence

 The mixing  interface, as indicated by significant temperature gradients,
 occupied the entire stream cross-section in early August but steadily
 narrowed through the  fall and winter as flows increased (Figure 12).

 The mixing  interface, as indicated by TDS, occupied midstream sections
 in August.  In November through January, the interface widened and
 moved  toward the south shore as the Clearwater River flow made its
 largest contribution  of the season to the total flow.

WATER  QUALITY

 Because temperature and TDS profiles as well as top and bottom chemical
 samples showed near complete surface to bottom mixing in 1969, a near
 surface water sample was assumed to be representative of all depths.

There  is a high range in temporal and spatial variation as shown in the
 cross-channel distribution of the measured water quality parameters and
 longitudinal mixing patterns (Figures A-la to A-13c).  Although all
chemical data are presented in Figures A-la to A-13c, a more meaningful
pre-impoundment description of the pool area is shown by three-year
mean cross-channel patterns (Figure 14).
                                  24

-------
                                                         Clearvater
pH
Oxygen (mg/1)
Oxygen Percent
  Saturation
Carbon dioxide
  (mg/1 C02)
Bicarbonates
  (mg/1 CaC03)
Total Hardness
  (mg/1 CaC03)
Total Dissolvec
  Solids
  (mg/1 NaCl)
,
8.15

9.64
*
•
97.7
•
0.9
_i* f \
" 8.02
// 8*12
f f *
' ' 10.08
• t •
/J102.5
,100.0.
I/ *- •
' 0.7

7.98
8.11
Snake
•
10.46
in 49 •

105.2
105.7

0.3
0.2
.L e«^i_j.uu / /
t A. 09 /North
8.04 7.64
7.97
8.19 8.13
shore
River .South shore
Ai.oy
9.96 10.35
10.30
10.11 10.04
/01.7/
99.1 100.8
103.7
102.1 104.0
. /3.1/
2.7 7.8
1.6
1.8 3.1i


                                                       y^.5/

103.
T
*
1
j
^107

r?.13
.6

.8,
100

109
.0

.4
94

118
.0

.5
35

134
.2

,2

114.


8

                                                       /24.4Z.
'101.4 104.4
103.2
. ..10fl.fi. 115.7
89.9

115.5
33.0
114.3
110.1

169


.3

"157

,148
.0

.8,
154

155
.4

.3
130

, 159
.5

.6
42

167
.8

.5

165.


7

                  35       10              5             0

                     KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE
Figure 14.  Average cross-channel patterns of water quality parameters
            in the Snake and Clearwater Rivers during adult steelhead
            migration - 1969, 1970, and 1971.
                                 25

-------
                                                        Clearwater
                                                        River
                                   -Flow Direction
Tannins  and
  Lignins  (mg
  /I Tannic
  Acid)
                                                      /U.
                         orth shore

0.


25
i
'•' 0

,, o
.53

.5,7
0.

0.
75

76
0

0
.89

.52
0

0
.82

.34

0


.25

Snake River
South shore
Sulfates  (mg/
   1)

30.9
,
" 26.7

, /27.S,
27.1

25.6
22.8 9.6

29.4 36.3,

32.5

Ammonia  (mg/
  1)
                                                      /0.19/

0.


12
l
" 0

,, o
.19

.23
0.

0.
19

18
0.

0.
21

14
0

0
.32

.22

0.


74

Transparency
(feet)
Pearl Benson
Index
(mg/1 CaSSL)
Total Volatil
Solids
(mg/D
7.4

1.2
,
t
a 108
35
'' 6.8
tf 8«7'
/ t
f f '
" 4.3
. , 5.4,

7/ 147
* 10
6.1
6.3

5.3
7.2

160
156
5
6.0
8.3
i
15.0
5.6
t
210
145

6.5
10.7,
/P/
0.4
8.3i
_y78 /_
42
67 ,
0
9.7
/
0.8
/
97

                   KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure 14 (Continued).  Average cross-channel patterns of water quality
                        parameters in the Snake and Clearwater Rivers
                        during adult steelhead migration - 1969,  1970,
                        1971.
                                  26

-------
Mean water  quality  changes  in the  Snake River as a result of pollution
inputs,  especially  the Kraft effluent, in  the immediate Lewiston area
were difficult  to detect  (Figure 14).  In  terms of toxic effects from
chemical loading, the Snake River  was not  greatly altered.  In the
immediate 3 to  4 km below the confluence on the north shore or Clear-
water  River side, gross changes in benthic periphyton and insect com-
munities were evident . . . diversity sharply dropped and "clean water
forms" gave way to  chironomids and isopods on a matrix of filamentous
fungi.   But none of the chemical parameters routinely measured showed
the free-flowing Snake River, when fully mixed and leaving the steelhead
tracking area,  as obviously unsuitable for migrating salmonids.  Mean
oxygen percent  saturation levels were five percent lower leaving the
tracking area compared to river inflows (97.7% vs 103.7%).  As reported
in other work on the lower  Snake River (Falter and Funk 1971), this
decline  in  oxygen was the beginning  of a slight oxygen sag which reached
minimum  levels  30 to 50 km  below the confluence.  Any tendency for an
oxygen sag  to develop, however, was  so slight that on sunny days, the
"spiking" of photosynthesis by pollutants  in the Lewiston area caused
a net  oxygen increase in  the area  5  to 50  km below the confluence.

Carbon dioxide  was  always low except for an increase to 7.8 mg/1 just
below  the confluence on the north  shore.   This increase usually was
found  in the Kraft  effluent plume  before complete mixing occurred.

Total  dissolved solids increased slightly  in water leaving the tracking
area (mean  TDS  leaving study area  =  169.3 mg/1), mostly because of the
mixing with the Kraft effluent which contained greater than 1000 mg/1
TDS.

Tannins,  sulfates,  and ammonia were  sometimes good indicators of the
effluent plume, but once  mixed with  the river flow, these increases
were usually undetectable (Figure  14).  Ammonia levels were higher above
than below  the  confluence because  of ammonia inputs from cattle feed-
lots in  the 15  miles upstream (Falter and  Funk 1973).

Net increases were  shown  in the Pearl-Benson Index and total volatile
solids even after complete mixing  and dilution (Figure 14).  The chemi-
cal station 2.4 km  below  the confluence had the highest Pearl-Benson
Indexes  and  total volatile  solids, indicating a major deflection of the
Clearwater  River flow and effluent plume closer to the north shore at
this station.

STEELHEAD MIGRATION PATHS AND BEHAVIOR

general  Patterns

The Snake River run of steelhead consists  of two overlapping groups:
Group A  (destined for the Salmon,  Imnaha,  and Grand Ronde Rivers) enters

-------
 the  Snake River  from July  to  September; while  Group B  (principally
 Clearwater River stocks) enters  the Snake  River  from September to
 November.

 In 1969 and  1970, as opposed  to  1971, steelhead  studied were  larger
 individuals  and  a larger proportion of each year's fish were  tracked
 later  into the fall  and winter (Table 1).  Clearwater  River fish com-
 prised 15 and 187» of the total Snake River run in 1969 and 1970, but
 only 117= in  1971.

 Since  our major  concern in this  tracking program was to detail individ-
 ual  fish behavior in the Lower Granite area, individual fish  paths are
 described for each fish tracked  in 1969, 1970, and 1971 (Figures 15, 16,
 and  17).

 In July, August,  and part  of  September in  all  three tracking  years, fish
 moved  24 hours a day.  We could  discern no rate  or behavior differences
 between night movement and day movement at these times.  After early
 October, however, fish rested with greater frequency and for  longer
 periods; movements became very sporadic later  in the season.

 Fish in 1969 or  1970 were not tracked more than  2 km downstream from
 the  release point.  In 1971, however, one  fish moved 50 km below the
 release point and was still moving actively downstream through Little
 Goose  Reservoir  at last sighting.

 All  fish showed  a preference  for traveling 20-30 m out from either
 shore  in the Snake River (Figures 15, 16,  17,  and 18).  Tagged fish
 migrated in mid-channel only when crossing over  to the opposite shore.
 No fish showed sustained upstream movement in  mid-channel.  The fish
 tracked through  the shallow first kilometer of the Clearwater River
 (0.5-1.0 m deep) did, however, travel in mid-channel.  As water temper-
 ature  and fish movement dropped, some fish did remain  stationary near
 the middle of the river.

 Depending on water conditions, the sonic transmitter could be detected
 from 10 to 1000 m away but had an average  range  of 300-400 m  in quies-
 cent water of average late summer and fall transparency.  The transmit-
 ter signal was masked by noises emitted from rocks rolling along the
 river bottom and by entrained air from rapids, therefore it was usually
 impossible to follow fish in rapids.  When a fish entered a rapids area
we went to the head of the rapids and waited for the fish to  come
 through.   The Kraft mill effluent also attenuated or reflected the
 transmitter signal in the first kilometer  downstream from the Snake-
 Clearwater confluence.  Occasionally we would  locate a tagged fish in
 the effluent plume only to lose the signal immediately.  The  fish would
 often appear in  the same general area again after several hours of
 search.  Some fish that entered rapids were never located again in
                                   28

-------
Table 1.  Characteristics of the summer steelhead runs and fish tracked
          in the lower Snake River, 1969-71.

Total steelhead over WWP Dam,
July-December
Total steelhead over Ice Harbor
Dam, July-December
Percent of Ice Harbor fish
passing over WWP Dam,
Ju ly-December
Dates of fish tracking
Number of fish tracked
Fish length: mean total length
range
Water temperature Snake R.
range during track
season (C) Clw. R.
River flow range Snake R.
during track season
(cfs x 1000) Clw. R.
1969
9,522
65,187
157.
July 11-
Jan. 6
24
73.6
61-93
3.5-24.0
1.0-24.0
17.1-37.6
1.8-10.0
1970
8,876
50,817
18%
July 17-
Nov. 18
28
73.9
64*87
4.5-23.5
0.5-24.0
18.4-39.9
2.6-9.6
1971
7,601
67,125
11%
July 22-
Nov. 7
37
68
55-97
4.0-23.5
1.0-25.5
20.7-49.5
3.0-11.2
                                     29

-------
Fish No. 69-1 Aug. 20
                              •Flow  Direction
  North Shore
   V
•Release Point
       15
                   10
0  South Shore
Fish No. 69-2 Aug.2l
Fish No. 69-3 Sept.25
Fish No. 69-4 Sept.25
1 1 1 1
Fish No. 69-5 Oct.3-0ct.30
Fish No. 69-6 Oct.4-0ct.5
Fish No. 69-7 Oct.7-Nov.25
          Kilometers Below Snake-Clearwater Confluence

Figure 15.  Adult steelhead migration paths in the Snake River, Lower
             Granite pool  area, 1369.
                                    30

-------
 Fish No. 69-8 Oct.6-Oct.E5
           •Flow  Direction
                                                                   North Shore
        •Release Point
       15
IO
0  South Shore
 Fish No. 69-9 Oct.9-Nov.2
 Fish  No. 69-10 Oct.IO-Oct.28
Fish No. 69-11 Oct.l4-Dec.2
Fish No. 69-12 Oct.l7-Nov.24
Fish No. 69-15 Oct.l8-Dec.8
Fish No. 69-14 Oct.28-Nov.26
  EZ
           Kilometers Below  Snake-Clearwater Confluence

Figure 15 (Continued).   Adult steelhead migration paths in the  Snake
             River, Lower Granite  pool area,  1969.
                                     31

-------
 Fish No. 69-15 Nov. 2
          •Flow Direction
  North Shore
    P^Release  Point
        15
10
0  South Shore
 Fish No. 69-16 Nov.7-Dec.l5
 Fish No. 69-17 Nov.20-Jon.6
 Fish No. 69-18 Nov.20-Dec.l2
 Fish No. 69-19 Nov.20-Nov.26
           Kilometers Below Snake-Clearwater Confluence

Figure  15 (Cotitiiiued).   Adult  steelhead migration paths in the Snake
             River,  Lower Granite pool area,  1969.
                                    32

-------
Fish No. 70-1*2 May5
r
                             Flow Direction
                                                                 North Shore
-Release Point
       15
                  10
0  South Shore
Fish No. 70-3 July 16-July 17
                                                      Z	.
                                                             r
Fish No. 7Q-4  July 17
Fish No. 70-5 Aug.3-Aug.4
Fish No. 70-6 Aug.S-Aug.6
Fish No. 70-7 Aug. l7-Aug.2l
                      \I
Fish No. 70-8 Auq.20-Aug.2l
          Kilometers Below  Snake-Clearwater Confluence
Figure 16.  Adult  steelhead migration paths in  the Snake River,
             Lover  Granite pool  area, 1970.
                                   33

-------
 Fish No. 70-9 Aug.26-Aug.28
               Flow Direction
  North Shore
      Release
                                           \
       15
     10
0 South Shore
 Fish No. 70-10 Aug.26-Aug.28
    \
"V      VT~\s\A
 Fish No. 70-11 Sept.9-Sept.l4
                                	A

 Fish No. 70-12 Sept.9-Sept.l7
 Fish No. 70-13 Sept.IO-Sept.l2
                                                               ]
 Fish No. 70-14 Sept.IO-Sept.ll
   V
 Fish No. 70-15  Sept.26-0ct.4
          Kilometers Below Snake-Clearwater Confluence

Figure  16 (Continued)».  Adult steelhead migration paths in the Snake
           River,  Lower Granite pool area, 1970.
                               34

-------
 Fish No. 70-16 Sept.26-Sept.29
                      •Flow Direction
                                                                  North Shore
      Release
      Point
\
.A
                                                               _L
        15
            10
                                                               0  South Shore
 Fish No. 70-17 5ept.26-Sept.29
 Fish No. 70-18 Sept.27-0ct.6
Fish No. 70-19 Ocf.3-0ct.2l
Fish No. 70-20 Oct. 17-Nov. 5
Fish No. 70-21 Oct.l7-Nov.8
Fish No. 70-22 Oct.l7-Nov.5
X2L/.
*--"
V
	 1 	 	 	 1 	 	
          Kilometers Below Snake-Clearwater Confluence


Figure 16 (Continued)1,   Adult  steelhead migration paths in the Snake
             River,  Lower Granite pool area,  1970.
                                     35

-------
  Fish  No. 70-23  Oct.l7-N6v.l4
           Flow  Direction
                                                                    North Shore
         •Release Point
         15
IO
                                                                    South Shore
  Fish No. 70-24 Oct.l7-Nov.7
 Fish No. 70-25 Nov.l2-NovJ4
 Fish No. 70-26  Nov.l2-Nov.l5
 Fish No. 70-27 Nov. 12-Nov. 18
 Fish No. 70-28 Oct.25-0ct.26
           Kilometers  Below Snake-Clearwater Confluence
Figure 16 (Continued).  Adult steelhead migration paths  in the Snake
             River,  Lower Granite pool area, 1970.
                                     36

-------
Fish No. 71-1 July22-July23
Flow Direction
North Shore
Release NV /
Point i \ / t , .
15 10 5
Fish No. 71-2 Aug.3
/
Fish No. 71-3 Aug.IO-Aug.ll
' \ r\ s\
\ i \ / \
Fish No. 71-4 Aug. 10

Fish No. 71-5 Aug. II
A^/ I
Fish No. 71-6 Aug.IS-Aug.l9
G-
i i i
Fish No. 71-7 Aug. 18
~
_ 	 1 	 — 	 1 	 1 	
---r'Vi
0 South Shore
i

/ *~
J J

^/





.
          Kilometers Below Snake-Clearwater Confluence

Figure 17.  Adult steelhead migration paths in the Snake River,
            Lower Granite pool area, 1971.
                                 37

-------
Fish No. 71-8 Aug.24-Aug.25
                                     •Flow Direction
North Shore
        -Release  Point
                                                                _L
       15
                          10
                                                                 0  South Shore
Fish No. 71-9 Auq.24-Aug.26
                       J~\
Fish No. 71-10 Aug.25-Aug.27
Fish No. 71-11 Aug.25-Aug.29
~^\
r— -~; 	 ^
Fish No. 71-12 Sept.IO-Sept.26
Fish No. 71-13 Sept. 10-Sept.13
                         V^v
Fish No. 71-14 Sept.ll-Sept.12
           Kilometers Below Snake-Clearwater Confluence


 Figure  17  (dmtJ'n'^d)» Adult steelhead migration paths in the  Snake
             River,  Lower Granite pool area,  1971.
                                     38

-------
Fish No. 71-15 Sept.!)
          •Flow Direction
   North Shore
      -Release Point
       15
10
0  South Shore
Fish No. 71-16 Sept.24-0ct.4
           \
                                         _
Fish No. 71-17 Sept.24-Sept.27
Fish No. 71-18 Sept.26-0ct.3
   VL
Fish No. 71-19 Sept.26-Sept.30
Fish No. 71-20 Oct.8
                        W  FL
                        VLJ7	-—.--
    No 71-21 Oct.8
1 1 	 X ^ ->» • .
'"--^^
• — -V*A , 1
          Kilometers  Below  Snake-Clearwater  Confluence



  Fi ure 17  (Continued).  Adult  steelhead migration paths in the

               Snake River, Lower Granite pool  area, 1971.
                                   39

-------
 Fish No. 71-22 Oct.8-Oct.IO
                                       Flow Direction
                                          North Shore
         -Release Point
       15
10
0  South Shore
 Fish No. 71-23 Oct.9
   u
Fish No. 71-24 Oct.IO-Qct.il
   V
Fish No.  71-25 Oct.IO-Oct.l4
Fish No. 71-26  Oct.l6-0ct.24
Fish No. 71-27 Oct.l6-0ct.23
Fl»h No. 71-28 Oct.l7-0ct.l9
           Kilometers Below  Snake-Clearwater Confluence

Figure 17 (Continued),   Adult steelhead migration paths in  the
              Snake River, Lower Granite pool  area, 1971.
                                     40

-------
Fish No. 71-29 Oct.l6-0ct.25
  Release Point
       15
10
           Flow  Direction
  North Shore
0  South Shore
Fish No. 71-30 Oct.l7-0ct.26
Fish No. 71-31 Oct.l7-Qct.29
Fish No. 71-32 Oct.27-Nov.7
Fish N,Q- 71-33  Oct.27-0ct.28
 V
Fish No. 71-34 Oct.27-0ct.29
    No. 71-35 Oct.27-Nov.7
           Kilometers Below  Snake-Clearwater Confluence

 Figure  17 (Continued).  Adult steelhead migration paths in  the
              Snake River,  Lower Granite pool area, 1971.
                                     41

-------
Fish No. 71-36 Oct 27-Nov.7           ^	FlOW Direction               North Shore
      -Release Point
       15                 10                5                 0  South Shore
Fish No. 71-37 Oct.27-Nov.7
          Kilometers Below  Snake-Clearwoter Confluence

Figure 17  (Continued).  Adult steelhead migration paths  in the Snake
           River,  Lower Granite  pool area, 1971.

-------
u
                      - o
                      o
                      f »••
                      :-

                        •= •



                        •


                     TCWI B.low
                     Conflytnct
                     Total Abo**
                     Cor.llw.nt.
                     Telol AMM
                     and B.low
                     Figure 18.   Distribution of  steelhead  in the  Snake River,  1969-71.   Width
                                  of bars  expresses  the percent of  fish in each  third of  the
                                  river width.

-------
spite of several days search as much as 25 km above and below the last
known position.  No explanation (other than transmitter failure) was
found for these losses.  Fish were never known to regurgitate tags
either in the live box or after release.  One tag stopped transmitting
while the fish was still in the live box before release.

A total of  11 tags were recovered from sport fishermen.  Five fish were
caught while still being tracked.  We had 3 recoveries in 1969; 1.5 km
below confluence, 2 km below confluence, and directly across the river
from the release point where the particular fish had been stationary
for 3 weeks.  In 1970 we had 4 recoveries; from the Salmon River near
Riggins, Idaho, 3.5 km below the Snake-Clearwater confluence, one 1970
tag was found on the bank of the Selway River (a tributary to the Clear-
water River) in April of 1971, and a tag was returned from a fish caught
in the Grand Ronde River near Troy, Oregon. Wehadfour 1971 tags recover-
ed; from 1.5 km below the confluence, 0.8 km up the Clearwater River,
and two 1971 tags recovered in the spring of 1972 . . . one was found
on the bank of the Salmon River and another lodged in bottom rocks 0.5
km up Alpowa Creek.

All fish caught by fishermen were in good condition.  More fish were
probably caught but even though a publicized $10.00 reward was offered
for recovered tags the tag is not readily visible to a person cleaning
the fish.  This high return of tags may indicate the tag and tagging
procedures had a minimal effect on the fish's behavior.  The shortest
elapsed time between tagging and recovery of a fish by fishermen was
16 days.

Lateral Position in the Stream

Lateral distribution of steelhead across the Snake River  is detailed
in Figure 18.  A well-defined preference for near-shore movement is
shown.

Fish passage observations from 1969 and 1970 in the river section 0.1-
0.4 km and 2.2-2.5 km below the Snake-Clearwater confluence were tested
by Chi Square to determine whether fish numbers passing on the Clear-
water or Snake side were significantly different than would be expected
by the ratio of Clearwater fish to Snake fish for each year.  The low
number of fish following the Clearwater side through this section was
not significantly different from the number that would be expected to
pass upstream on that side based on Washington Water Power Dam counts
of total numbers of fish up the Clearwater River (P < .10).  We con-
cluded that steelhead were not avoiding the Clearwater side, even though
effluent concentrations were higher there.
                                   44

-------
Rest Areas

Resting areas did increase in frequency as fish approached the con-
fluence (Figure 19).  As with cross-over points, the frequency of
individual fish use of rest areas increased markedly later in the track
season.  Stopping points became more frequent and longer until November
when resting or stopping times exceeded the six week tag life.

A favored rest area was 2.7-3.5 km below the confluence on both shores,
even though highest mean Pearl-Benson Indexes and total volatile solids
were on the north shore 2.5 km below the confluence (Figure 14).  After
mid-September, fish commonly sat for extended periods 100-200 m below
the Clearwater River mouth.

At a rest stop, fish did not remain completely motionless.  Normal
resting behavior involved some milling around in an area 20-50 m in
diameter, occasionally moving toward mid-channel, but not to the other
side of the river.  Resumption of upstream travel did not always follow
milling activity, but greatly increased milling activity or "restless-
ness11 usually preceded resumption of upstream travel.

We attempted to disturb several resting fish by shining a spotlight
directly down on a known fish position at night.  The fish did not
avoid the light in less than 2.5 m water depth.  Likewise, efforts to
disturb a fish day or night by boat activity (propeller or jet boat)
directly over the fish were successful only in water shallower than
2.5 m.

Attempts to observe tagged steelhead in deep water with SCUBA failed.
A diver would position himself on the bottom in a predicted location
to intercept an upstream moving fish, but the divers were consistently
avoided.  In one instance when a fish had been sitting in a slough for
two weeks at 4.5 C, divers attempted unsuccessfully to observe the
fish while guided by sonic trackers on the surface.  The fish never
left a 40 m diameter area and we were unable to force it from the
slough into faster water.  The fish settled down in the same area after
the divers left.

Depth of Migration and Preferred Current Velocity

Several times each year, we visually sighted tagged steelhead passing
upstream over shoal areas.  These observed steelhead were always within
10-20 cm of the bottom.  Low velocity water was preferred to high
velocity water.  If a swift, turbulent stretch was ahead of a fish, the
fish would often cross over below the rapids seeking out a lower velo-
city vector, whether the new path was shallow or deep water.  Thus, in
some areas fish often travelled several hundred meters through water
only 1-2 m deep.
                                   45

-------
                Legend
         4	»> = Cross-over area                     Clearwater
                 D  .-                              River
               =  Resting area
 	                                                       North
  <»*    A A        A    A      *»    M*A      A      A A  A^to     shore
   *<*   T
                                     	|	| South
                    1*0              ~5              6             5 'shore

           KILOMETERS FROM SNAKE-CLEARWATER CONFLUENCE

Figure 19.  Principal cross-over and resting areas preferred by sonic-
            tagged steelhead migrating through the Lower Granite pool
            area, 1969-71.
Complete cross-sectional profiles of current velocity were taken 0.2,
1.6, and 10.6 km below the confluence, but we have presented current
velocities from bottom to 1.5 m off the bottom since this is a depth
representative of adult passage (Figure 20).  A plot of steelhead loca-
tions through the velocity stations indicates that off-bottom current
velocity is a more important determinant of lateral location than is
either depth or distance from shore.  At each station most fish passed
through off-bottom current velocities of 0.2-0.5 m/sec over a wide
range of depths and distances from shore.

Steelhead Travel Rates and Reversals

Steelhead travel rates and reversals (changes of direction) as related
to 8 independent variables (fish length, day of year, water temperature,
Clearwater River discharge, Snake River discharge, total combined dis-
charge, barometric pressure, and moon phase) were analysed by computer-
ized stepwise multiple regression on an IBM 360/40 computer.  Dependent
variables were total movement (up and downstream), net movement up-
stream, and reversals (noted as direction change up or downstream of
greater than 100 m) .  Day and night behavior was compared separately
and in combination.

The total variation attributable to the independent variables was
usually quite low, ranging from 1 to 50% over the 27 sets of analyses
(9 dependent variables x 3 years).  Day of year showed the highest
correlation in 9 of the 27 tests (Table 2) and was always one of the 3
most important independent variables.  Water temperature showed the
highest correlation in 8 out of the remaining 18 regressions and failed
to appear in the top 3 rankings only once.  Since day of year and water
temperature vary inversely together and are closely related, we do not
feel that these two variables can be realistically separated.  This day
of year or water temperature relationship showed highest correlation
with steelhead behavior in 17 out of 27 tests.  Barometric pressure was
consistently poorly correlated, ranking in the top three variables only
                                   46

-------
    e2
                           0.2 km Below Confluence
                         Off Bottom Current Velocity m/wc.
                   .50   1.00        I.SO       1.00      .50
   I2
                            1.6 Km Below Confluence
                        Off Bottom Current Velocity m/»ec.
                       .50    1.00       1.00            .50
      51-
          0
           North Short
50
  100
Meters
                           tso
      200
South Short
Figure 20.   Observed  position of steelhead 0.2,  1.6 and 10.6
              kilometers below the Snake-Clearwater confluence
              in relation to current velocity  1  m off the bottom,
              1969-71.

                                     47

-------
                                             10.6 km Btlow Confluence
                                           Off Bottom Current Velocity m/sec.
                                         .50         I.OO     1.00          .50
                            Or
00
                         ~ 2
                          E
                          ex
                          5
                                Legend
                                D = 1969
                                o = l97O
                                • =1971
                                                50
                                  North Shore
                             Fig.  20 (continued).
          100

         Meter*
ISO
      200
South Shore
Observed position of steelhead 0.2,  1.6  and
10.6 kilometers  below the Snake-Clearwater
confluence  in relation to current velocity
1 m off the  bottom, 1969-71

-------
             Table 2.  Ranking of independent
                       ranking indicates early
variables according to their apparent relation to steelhead movement.   Low
 selection in the regression equation, hence higher multiple correlation.
vo
Year
1969
1970
1971
Rank
1
2
3
1
2
3
1
2
3
Total
Movement
Day of
Year
r=0.4959
Fish
Length
r=0.5506
Snake R-
Flow
r=0.5738
Water
Temp.
r=0,5683
Clw. R.
Flow
r=0.5859
Snake R.
Flow
r=0.5929
Day of
Year
r=0.6133
Moon
Phase
r-0.6225
Fish
Length
r-0.6261
Net
Movement
Water
Temp.
r=0.3493
Fish
Length
r=0.3755
Total
Flow
r=0.3942
Day of
Year
r=0.4501
Clw. R.
Flow
r =0.4 745
Snake R.
Flow
r-0.4797
Water
Temp.
r=0.2699
Moon
Phase
r=0.2852
Clw. R-
Flow
r-0.3011
Total
Reversals
Fish
Length
r=0.0905
Moon
Phase
r=0.1197
Snake R.
Flow
r=0.1353
Snake R.
Flow
r=0.1596
Water
Temp.
r-0.1900
Day of
Year
r=0.2802
Total
Flow
r=0.1556
Water
Temp.
r=0.1670
Snake R-
Flow
r-0.2&35
Day^ On^y Movements
Total
Water
Temp.
r=0.4653
Fish
Length
r=0.4866
Total
Flow
r=0.4913
Water
Temp.
r=0.5935
Fish
Length
r=0.5S86
Day of
Year
r=0.6008
Day of
Year
r=0.6181
Moon
Phase
r=0.6252
Water
Temp.
r-0.6262
Net
Water
Temp.
r=0.4193
Fish
Length
4=0.4575
Snake R.
Flow
r=0.4685
Day of
Year
r=0.4796
Moon
Phase
r=0.4919
Clw. R.
Flow
r=0.4945
Water
Temp.
r=0.2171
Moon
Phase
r=0.2470
Clw. R.
Flow
r-n.m9
Reversals
Day of
Year
r=0.1805
Water
Temp.
r=0.4090
Moon
Phase
r=0.4431
Snake R.
Flow
r=0.1857
Total
Flow
r=0.2091
Fish
Length
r=0.2261
Snake R.
Flow
r=0.2153
Moon
Phase
r=0.2434
Bar.
Pressure
r=0.2521
Night Only Movements
Total
Day of
Year
r=0.3683
Total
Flow
r=0.4099
Moon
Phase
r=0.4158
Day of
Year
r=0.6523
Clw. R.
Flow
r=0.6909
Bar.
Pressure
r =0.71 24
Water
Temp.
r=0.4845
Fish
Length
r=0.5032
Bar.
Pressure
r-0.5111
Net
Total
Flow
r=0.2310
Clw. R.
Flow
r=0.2537
Day of
Year
r=0.2617
Day of
Year
r=0.5358
Clw. R.
Flow
r=0.5593
Bar.
Pressure
r=0.6035
Clw. R.
Flow
r=0.1562
Moon
Phase
r=0.2026
Day of
Year
r-0.2549
Reversals
Fish
Length
r-0.1173
Snake R.
Flow
r=0.1551
Bar.
Pressure
r=0.1639
Water
Temp.
r=0.1865
Day of
Year
r =0.2 744
Snake R.
Flow
r=0.3541
Moon
Phase
r-0.2766
Clw. R.
Flow
r-0.3073
Water
Temp.
r»0.3282

-------
5 times.  Moon phase never ranked below 3rd but was the 1st selected
variable only once.  Ranking of river discharge showed little pattern
and fluctuated widely.

During the July through December steelhead migration period, dissolved
constituents of the Snake River varied from lowest to highest natural
annual levels (Figures A-7a, b, and c).  Therefore, a meaningful
analysis had to subdivide a year's migration data into groups according
to the naturally occurring water quality variation.  Rapid week to week
variation in the Snake River water chemistry limited comparable fish
groups to a month's duration.  The resulting breakdown of steelhead
data into groups relating to natural seasonal changes in water quality
left too few degrees of freedom for strong positive correlation.

We averaged total movement, net movement, and reversals over all 3 study
years and compared them to water temperature, river flow, and barometric
pressure (Figures 21, 22, and 23).  The apparent relationship cf total
and net movement to temperature is readily seen as rates change from a
mean rate of 0.5 km/day at 3 C to 15.3 km/day at 23.5 C (Figure 21).
Reversals show no relationship with temperature.

The rate-flow relationship (Figure 22) probably is a further expression
of the already described rate-temperature relationship.  Total and net
movement are high at low flows (high temperatures), low at intermediate
flows (typical of fall and early winter cold flows), then high again at
high flows (early summer when river temperatures are rising rapidly).
Reversals show no relationship with flow.

Total and net movement show an optimal relationship with barometric
pressure (Figure 23).  Maximum total and net rates are 5.0 and 3.0 km/
day at 28.45 in. Hg.  Migration rates drop at higher and lower barometr-
ic pressures.  Reversals show no obvious relationship with barometric
pressure.

Above vs Below Confluence Migration Rates

Comparison of the combined Snake and Clearwater movements above versus
below confluence net upstream movement shows that 1970 fish moved 43%
faster above the confluence than below it.  In 1971 fish above the con-
fluence moved 38% slower than they moved below the confluence (Table 3).
Dworshak Dam, a high storage project on the North Fork of the Clearwater
River closed its gates on September 27,  1971, thereby reducing the
Clearwater flow by one-half.  Fish tracked after that date had a higher
occurrence of milling and reversals in the lowest 2 km of the Clearwater
River.  Such behavior would reduce the net upstream rate.
                                  50

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   20
o
o


£
•»

2
 o
    10
                                          Legend

                                        •••—• = Reversals

                                         •*- -* s Net

                                        -•—• = Total
                 0-6
                            6-85
                                                    11-13.5      135-16


                                               Temperature (C)
                                                                           16-185      165-21
Figure  21.  Three  year average kilometers  and/or  reversals per day compared to temperature (C),

             1959,  1970, 1971.

-------

    10
 ^
 s
   "
   25
•X.
                                                          Legend
                                                                                             ,
                                                                                               •


                0-23
              23-255     255-28       28-305    30 5" 33

                               River Flow (CFS 1000)
                                                                        33-355
355-38
38-
Figure  22,
Three year  average kilometers per day and/or  path reversals per  day  compared to
Snake River flow volume,  1969, 1970, and 1971.

-------
u
UJ
           10
        o
        o
        •  7-3
        I
        f
        = 25
   Legend
*•-••—• = Reversals
- —-=N«t
~— = Total
         28.OO-26.IO    26.10-20.20   282O-28.3O   283O-2B4O  284O-28.50   2850-2860   2860-28.70  28.70-28.80   2880-2890  289O-29OO  29.OO-
                                                     Borometric Pr»s»ur« (Inches Hg)


           Figure  23.   Steelhead  migration rate (total and  net kilometers per  day) and/or reversals per
                         day  compared to  barometric pressure.   Averaged over 1969,  1970  and 1971.

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Table 3.  Comparison of net upstream combined Snake and Clearwater move-
          ment (km/day) above and below the confluence.  Only fish with
          net upstream movement and tracks of less than six days duration
          are represented.
                       Average net upstream        Average net upstream
                    movement below confluence   movement above confluence
1970       km/day            10.71                       15.30

  95% Confidence
      Interval         5.80	15.62         6.26	24.34
1971       km/day            16.65                       10.32

  95% Confidence
      Interval         9.94	23.36         3.06	17.58
                                   54

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                          SECTION VII

                          DISCUSSION

Chemical parameters showed that no serious pre-impoundment water quality
problems exist in the Lower Granite pool area because of rapid mixing.
Bacteriological indicators, however, have shown that this portion of
the Snake River is below the bacterial standards for Class A waters in
the state of Washington (Falter and Funk 1973).

Existing reservoirs on the lower Snake River do not thermally stratify;
the water is in relatively constant exchange with the atmosphere (Falter
and Funk 1973).  Lower Granite Reservoir is not expected to thermally
stratify.  Therefore, after the proposed secondary treatment of incoming
domestic and Kraft wastes, we do not anticipate large masses of toxic
water in the reservoir.

Analysis of mixing patterns of the Snake and Clearwater River flows
below their confluence showed that dilution of the Kraft mill effluent
stream into the two flows occurs so rapidly that high concentrations of
the effluent are not detectable beyond 0.2 km below the confluence.  At
20,000 cfs, mixing of the two flows was essentially complete 16 km below
the confluence, but when the total flow exceeded 40,000 cfs, the two
flows still were not completely mixed 35 km downstream.

Under present river conditions the high-temperature Kraft effluent
dilutes rapidly to a level where resulting Snake River temperatures and
water quality showed no apparent blockage or gross atypical migrational
behavior in sonic-tagged steelhead.

In late August, 1970, maximum concentrations of approximately 2.6%
Kraft effluent occurred in midriver, 0.2 km below the confluence.  In
November, 1970, concentrations of approximately 1.37» Kraft effluent
were found.  Both of these values were well below the adverse concentra-
tion for juvenile sockeye salmon (Alderdice and Brett 1957).  According
to Jones (1953) Bond showed that steelhead trout did not avoid paper
mill wastes in concentrations ranging from 1.57. to 4.57. although coho
salmon avoided concentrations of 4.37, and chinook salmon avoided con-
centrations of 1.57..  These results indicate that effluent concentra-
tions even 0.2 km below the outfall are below threshold avoidance levels
for steelhead.

Impoundment of the study area could conceivably allow concentration of
Kraft effluent in low-velocity shoreline areas where the toxic effects
of Kraft effluent may adversely affect migrating adult steelhead.
Probability of poor mixing occurring is slight since PFI will be replac-
ing the single port discharge with a 120 m long submerged diffuser run-
ning the width of the river at the confluence.

-------
Temperatures of the Snake River leaving the study area ranged from 3.0
C to 23.5 C with the fluctuations resulting primarily from seasonal
climatic changes.  Temperature increases from Kraft effluent entering
the river at temperatures above 30 C and volumes of approximately
113,500 to 121,000 m3/day were usually undectable.  The great dilution
effect of the river water accounted for the difficulty in identifying
Kraft effluent by temperature as little as 200 m below the outfall.

Differences in river temperature or other aspects of water quality
across the stream width was not shown to significantly affect the
lateral position in the stream of migrating adult summer steelhead.

Multiple correlation showed steelhead travel rates to be most highly
correlated with time of year and water temperature.  Extreme variation
between individual fish kept correlation coefficients very low.

Net and total upstream movement was less than 1 km/day in the 0-11 C
temperature range, then increased to 5 km/day at 18.5 C, and increased
very rapidly to 16 km/day at 21 C.  This correlation does not prove a
cause and effect relationship between temperature and rate of movement.
However, other evidence implies that a cause and effect relationship
may exist for temperature.  Body temperatures of most fish do not
differ more than 0.5 C-1.0 C from that of the surrounding water.  There-
fore, changes in the metabolic rate, hence rate of migration, relate
closely to changes in temperature of the surrounding water.  Changes in
temperature can trigger the start of processes such as migration and
spawning (Nikolsky 1963).
                                   56

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                         SECTION VIII

                       LITERATURE CITED

Alderdice, D.F., and J.R. Brett.  1957.  Some effects of Kraft mill
     effluent on young Pacific salmon.  J. Fish.  Res. Bd. Can. 14(5):
     783-795.

American Public Health Association.  1965.  Standard methods for the
     examination of water and waste water.  12th edition, A.P.H.A.,
     A.W.W.A., and W.P.C.F.

Barnes, C.A., et al.  1963.  A standardized Pearl-Benson, or Nitroso,
     method recommended for estimation of spent sulfite liquor or sulfite
     waste liquor concentration in waters.  Technical Association of the
     Pulp and Paper Industry 46(6):347-351.

Environmental Protection Agency.   1969.  Methods for chemical analysis
     of water and wastes.  EPA, Cincinnati, 312 p.

Falter, C.M., and W.H. Funk.  1973.  Joint water quality study by Wash-
     ington State University and the University of Idaho on the Lower
     Granite damsite area.  Final  Report submitted to:  U.S. Army Corps
     of Engineers, Walla Walla.

Jones, Benjamin Franklin.  1955.  The avoidance reactions of chinook
     salmon, Oncprhynchus tshawytscha (Walbaum), and coho salmon,
     Oncorhynchus kisutch  (Walbaum), to paper mill effluents.  M.S.
     thesis, Oregon State College.  32 p.

Miller, E.  1972.  Study of pollutional loads in the area of the Snake-
     Clearwater River confluence.  M.S. thesis, Washington State Univer-
     sity.

Nikolsky, G.V.  1963.  The ecology of fishes.  Academic Press, New York.
     352 p.

Oregon Fish Commission.  1967.  The 1966 status report on Columbia
     River fisheries.  Oregon Fish Commission, Portland.  97 p.

Stammer, H.A.   1958.  Toxicity  towards fish shown by various slime-
     controlling agents used in the paper  and pulp  industry.  Papier
     Darmstadt  12:41-44; Water  Poll. Abs.  31(11) Abs. No. 2243; Sport
     Fish. Abs. 4(1) Abs. No. 2157.

Strickland, Roy.  1967.  Sonic  tracking of steelhead in  the Ice Harbor
     Reservoir, 1967.  Washington  Game Department.
                                  57

-------
U.S. Array Corps of Engineers.  1970.  Annual fish passage report,
     Columbia River Projects, 1970.  U.S. Army Corps of Engineers,
     North Pacific Division.

U.S. Geological Survey.  1969, 1970, 1971.  River flow and temperature
     records.  U.S.G.S., Portland, Oregon.

Webb, William Edward.  1958.  Preliminary studies to determine the
     nature of the principal toxic constituents of Kraft pulp mill
     waste.  M.S. thesis, Oregon State College.

Whitney, Arthur N., and John C. Spindler.  1959.  Effects of Kraft
     paper wastes on a Montana stream.  Trans. Am. Fish. Soc. 88(2):153,

Williams, H.D.  1969.  Effect of Kraft mill effluent on structure and
     function of periphyton.  Ph.D. dissertation, Oregon State Univer-
     sity.
                                  58

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                           SECTION IX

                            APPENDIX

 No.

 A-la   Cross-channel pH patterns in the Snake and
        Clearwater Rivers during adult steelhead
        migration, 1969

 A-lb   Cross-channel pH patterns in the Snake and                   64
        Clearwater Rivers during adult steelhead
        migration, 1970

 A-lc   Cross-channel pH patterns in the Snake and                   65
        Clearwater Rivers during adult steelhead
        migration, 1971,

 A-2a   Cross-channel oxygen patterns (mg/1)  in the Snake            66
        and Clearwater Rivers during adult steelhead
        migration, 1969

 A-2b   Cross-channel oxygen patterns (mg/1)  In the Snake            67
        and Clearwater Rivers during adult steelhead
        migration, 1970

 A-2c   Cross-channel oxygen patterns (mg/1)  in the Snake            68
        and Clearwater Rivers during adult steelhead
        migration, 1971

 A-3a   Cross-channel oxygen saturation  patterns  (percent            69
        saturation) in the  Snake  and  Clearwater Rivers
        during  adult  steelhead migration,  1969

 A-3b   Cross-channel oxygen  saturation  patterns  (percent            70
        saturation) in the  Snake  and  Clearwater Rivers
        during  adult  steelhead migration,  1970

 A-3c   Cross-channel oxygen  saturation  patterns  (percent            71
        saturation) in the  Snake  and  Clearwater Rivers
        during  adult  steelhead migration,  1971

 A-4a   Cross-channel  carbon  dioxide patterns (mg/1  free  C02)         72
        in  the  Snake  and Clearwater Rivers during adult
        steelhead migration,  1969

A-4b    Cross-channel  carbon  dioxide patterns (mg/1  free  C02)         73
        in  the  Snake and Clearwater Rivers during adult
        steelhead migration,  1970
                                  59

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                    APPENDIX - (Continued)

No,                                                                Pagi

A-4c   Cross-channel carbon dioxide patterns  (mg/1 free 062)        74
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1971

A-5a   Cross-channel bicarbonates patterns  (tog/1 CaCO-j)             75
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1969

A-5b   Cross-channel bicarbonates patterns  (mg/1 CaCOj)             76
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1970

A-5c   Cross-channel bicarbonates patterns  (mg/1 CaCO-j)             77
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1971

A-6a   Cross-channel total hardness patterns  (mg/1 CaCOj)           78
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1969

A-6b   Cross-channel total hardness patterns  (mg/1 CaCO
-------
                    APPENDIX -  (Continued)

No.                                                                Page

A-8b   Cross-channel tannins and lignins patterns (mg/1             85
       tannic acid) in the Snake and Clearwater Rivers
       during adult steelhead migration, 1970

A-8c   Cross-channel tannins and lignins patterns (mg/1             86
       tannic acid) in the Snake and Clearwater Rivers
       during adult steelhead migration, 1971

A-9a   Cross-channel sulfate patterns  (mg/1 SO^) in the             87
       Snake and Clearwater Rivers during adult steelhead
       migration, 1969

A-9b   Cross-channel sulfate patterns  (mg/1 SO.) in the             88
       Snake and Clearwater Rivers during adult steelhead
       migrationj 1970

A-9c   Cross-channel sulfate patterns  (mg/1 SO^) in the             89
       Snake and Clearwater Rivers during adult steelhead
       migration, 1971

A-lOa  Cross-channel ammonia patterns  (mg/1 NH-j) in the             90
       Snake and Clearwater Rivers during adult steelhead
       migration, 1969

A-lOb  Cross-channel ammonia patterns  (mg/1 NEj) in the             91
       Snake and Clearwater Rivers during adult steelhead
       migration, 1970

A-lOc  Cross-channel ammonia patterns  (mg/1 NH^) in the             92
       Snake and Clearwater Rivers during adult steelhead
       migration, 1971

A-lla  Cross-channel transparency patterns (secchi disc feet)       93
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1969

A-llb  Cross-channel transparency patterns (secchi disc feet)       94
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1970

A-llc  Cross-channel transparency patterns (secchi disc feet)       95
       in the Snake and Clearwater Rivers during adult
       steelhead migration, 1971
                                 61

-------
                    APPENDIX - (Continued)

No.                                                                Page

A-12a  Cross-channel Pearl-Benson Index patterns (mg/1              96
       Standard Calcium Spent Sulfite Liquor Solids) in
       the Snake and Clearwater Rivers during adult
       steelhead migration, 1969

A-12b  Cross-channel Pearl-Benson Index patterns (mg/1              97
       Standard Calcium Spent Sulfite Liquor Solids) in
       the Snake and Clearwater Rivers during adult
       steelhead migration, 1970

A-12c  Cross-channel Pearl-Benson Index patterns (mg/1              98
       Standard Calcium Spent Sulfite Liquor Solids) in
       the Snake and Clearwater Rivers during adult
       steelhead migration, 1971

A-13a  Cross-channel total volatile matter patterns (mg/1           99
       total volatile matter) in the Snake and Clearwater
       Rivers during adult steelhead migration, 1969

A-13b  Cross-channel total volatile matter patterns (mg/1          100
       total volatile matter) in the Snake and Clearwater
       Rivers during adult steelhead migration, 1970

A-13c  Cross-channel total volatile matter patterns (mg/1          101
       total volatile matter) in the Snake and Clearwater
       Rivers during adult steelhead migration, 1971
                                 62

-------
July 1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
                                    Flow Direction
 Clearwater
 River

/ -  Aprth shore
7.32 -
' f ' '
8.30

8.00
8.30 7.83
, . , 8.16



:S 8.17
, . , 8. 06
i f f i
' 8.03
8.10 8.03
, -, 8.19

" 7.86
. .. 8.14
7.41 7
7.41 L 8
Snake River
7
. 1

8
8
8
i


8
8
8
.87
.05

.96
;§§

.13
.31
.38

- 8
- 8
" fl

.22
.13
.35
7.87
8.0,5
/_
7.95
fcffi
_J6.2(.
7.92
8.17
7.86
-//.•'
.13
.14
.25.
_/7.K
7.69
8.00
8.27
7.21
South
7.62
,/
8.41
,/

/
8.20
/7.7n/
7.80
7.74
8.00

8
8

.09
.24
7.41
8.09
8.20
m 7 O *
6.48
8.00
8.06
8.27
,/
8.21
Dec. 16-19

                 35       10            5              0

                     KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-la.  Cross-channel pH patterns in the Snake and Clearwater
              Rivers during adult steelhead migration, 1969.
                                    63

-------
^ 	 Flow
7.90 7.90
Sept. 4-18 7.90
l // 7.99 ft.OS
Snake
\ ff \ i
Oct 15 8-42 8-^°
to 7.96
Now-7 i ff 8.47 8.42
Direction
8.10
t a. in
River
i
8.41
i 8.61
Clearwater
River
y^ /North Shore
8.3(
i
South Shore
8.2;
/.45/
//r 7.89 7.79
Nov.l-25 7.96
, ,, 8.06 8.11
7.58
i 8.17
8.27
i
             35       JO              5              0

            Kilometers Below Snake-Clearwater Confluence

Figure A-lb. Cross-channel pH patterns in the Snake and Clearwater
            Rivers during adult  steelhead migration,  1970.
                             64

-------
    Sept. 2-8
   S«pt. 8-10
  Sept. 21-24
    Oct. 8-22
    Nov. 4-11
1
7.95
i
i
8.20
i
i
8.42

-
i
8.33
i
i
8.33
Clearwater
River
, * — ; Flow Direction ( /- /^ Shore
7.85
, ,7.77i

T /
8.13
, ,8.48,
/ /
8.11
8.05,
r /
il 1
/ f
7.70
,, 8.05i
F /
/ /
8.24
..8.25,
• f
i , \
7.93
,,7.92i
7.77
7.88 ,
Snake River
1
8.09
8.13 ,
i
8.24
8.29 ,
i
7.99
7.95 i

7.78
8.32 ,
t
7.90
7.88 i
7.85
7.88
7.93 i

South Shore
1 / " /
8'08 7.88
8.28 . '
, A19/
8.22
7.72
8.19 ,
, A19/
7.95
8.12 i
/-/
8.35
8.34 i


^-J-«L-
7.98
7.33
7.85 i

     Dec. Ml
              35       10             5              0

            Kilometers  Below Snake-Clearwater Confluence

Figure A-lc.  Cross-channel pH patterns in the Snake and  Clearwater
             Rivers  during adult steelhead migration,  1971.
                                65

-------
 July 1-2
July  22-24
Aug.  11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
Dec. 16-19
f ,* /
f f
M J

r f
9.03
| * y

» /
8.72
i j »
1 Z *
8.97
| * /
8.93
1 ' //

10.76
1 /r

4
-

-

7.97
8.14
8.28

8.03
8.13
8.15

9.22
Q as

10.75
10.73
10.87

10.56
9.47
1 	 Flow Direction
10.50
10?40
Snake River
t 1
7.55
7.69
8.55
i i
7.59
7.98
8.16
i i
7.75
7.70
i 8.37

10.90
10.41
• 10.13
i i
10.68
10.84
10.73

10.97
10.91
Clearwatei
River
/ /
/ -- /North
10.50
9.85
10.40
shore
South shore
8.93
9.76 10.36
10.02
/.48/
8.24
9.29 9.80
9.30
/8.13/
8.03
9.07 9.54
9.42
/2.W
11.31
10.09 10.29
9.22
/2.2V
12.26
10.95 10.72
10.79
/J.41/
13.16
11.82 11.60
11.15

Figure A-2a.
    35  '10             5             0

        KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Cross-channel oxygen patterns (mg/1) in the Snake and
Clearwater Rivers during adult steelhead migration, 1969,
                                   66

-------
Sept. 4-18
Oct. 15
to
Nov. 7
•* 	 Flow
i i i \ \
7.16 7.30
7.44
i .. 7.15i 6.96
Snake
1 y / 1 1
10.27 10'71 10'82
i ., 11. Q9 10.84
Direction
i
7.09
i 7.22
River
i
10.10
i 10.46
Clearwater
River
/ * ^North Shore
8.64
South Shore
/2.7/
ia97
1
    Nov. 1-25
             J	/
" 11.93
10.27
i ft H.3,7
12.23

11.51 ,
12.50

11.06

10.97
i
             35       10             50

            Kilometers  Below Snake-Clearwater Confluence

Figure A-2b. Cross-channel oxygen  patterns (mg/L) in  the  Snake and
            Clearwater Rivers during adult steelhead migration,
            1970.
                                  67

-------
    Sept. 2-8
   Sept. 8-10
  Sept. 21-24
    Oct. 8-22
    Nov. 4-11
^ 	 Flow
i /, i «
/f9.40 9.00
7.90
, 9.00, 9.10
Snoke
'9.54 9.68
, , 9.44| 9.56

"10.30 10.30
10.23
, .10.30 10.20
i // i i
"10.48 10.35
10.26
i ,,10.23 10.50
Cleorwoter
River
Direction ( yA4^/jorth Sh
8.98
8.68
9.45 •
piver South Sh
/9.48/
9.50
. ,.6, . . «-<8
H
10.20
9.73
10.50 .
• A/ -,
10.06
i 10.46 i
f f
11.57 11.77
, 11.73 11.72
11.72
, 11.76 •
     Dec. l-ll
                                               .    M
13.47
14.58
, ,,13.23
12.70
13.43 i
13.30
13.90 i
14.30
              35  "    10             5              0

            Kilometers  Below Snake -Clearwater Confluence

Figure A-2c. Cross-channel oxygen patterns (mg/L) in the  Snake  and
            Clearwater Rivers during adult steelhead  migration,
            1971.
                                   68

-------
                                                    Clearwater
July 1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
Dec. 16-19
                                  Flow Direction
                                                          orth shore
t / f ~ 1 I ""— 1
i t y
107
i i f
103
1 i i
i
-

92
96
97,
Snake River
i i
89

87
91
i 94

South shore
112
III . 123
/100/
99
109 117
111 ,
i f ^^ i i i / yo /
* ^^
103

85
i ,» •

t w
95


93
94
93i
l
82
89,

99
i
86
77,
89
89
i 96
i i
106
101
• 100
i i
97
104
99
i i
88
90
97
107 110
111 ,
_//
93
90 100
/102/
107
100 101
101,
/„/
97
95 97
98,

  35
                        10
Figure A-3a
     KILOMETERS BELOW SNAKE -CLEARWATER CONFLUENCE

Cross-channel oxygen saturation patterns (percent
saturation) in the Snake and Clearwater Rivers during
adult steelhead migration, 1969.
                                    69

-------
^ 	 Flow
1 // i i
80.3 82.4
Sept. 4-18 81>0
I, fi 80.31 78.3
Snoke
i // l i
Oct. 15 " 105.6 105.6
*° 92.7
Nov'7 | ,,105.1 107.1
I // ' '
95.8 96.6
Nov. 1-25 92.7
i .. 95. 3i 96.6
Direction
t
80.3
I 82.4
River
i
96.3
I QQ.&
I
95.8
i 95.3
Clearwater
River
/).0 /
/North Shore
92.7
South Shore
/Qb.Q/
100.4
i
'lo4.C/
100.4
i
             35 '•    10             5             O

            Kilometers  Below Snake-Clearwater Confluence

Figure A-3b. Cross-channel  oxygen saturation patterns (percent
            saturation)  in the Snake and Clearwater Rivers
            during adult steelhead migration,  1970.
                                  70

-------
     Sept. 2-8
    Sept. 8-10
  Sept. 21-24
    Oct. 8-22
    Nov. 4-11
     Dec. t-ll
^ — Flow Direction
i / / i i i
105.0 100.
89.2
i ,,100.4 100.
4 99
4 , 105
Snake River
^HO.2 110.
89.2
, ,,108.2 109.
1 ff 1 t
"136.5 109.
106.0
, ,,110.3 108.
2 110
2 i 110
i
2 108
0 , 103
Clearwater
River
yrt.03 ./North Shore
,9
96.8
.1 i

South Shore
/I03.5/
.2
96.8
.7 ,
/96.3/
.2
106.1
.3 ,
\ i • \ \ \ / ~ /
"130.3 128.
109.0
i .,127.1 130.
2 123
8 i 128
,6
.8 i
"l**l | | / /
106.1 108.
i ..106.1 107.
i it i i
"113.5 106.
117.4
i ,,111.0 113-
2 106
6 i 108

0 110
4 i 118
.0
.7 i
A06.(y
.2
107.0
.5 •

35
                        10
            Kilometers  Below Snake -Clearwater Confluence

Figure A-3c.  Gross-channel  oxygen  saturation patterns (percent
             saturation)  in the Snake and Clearwater Rivers
             during adult steelhead migration, 1971.
                                   71

-------
July  1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
Dec. 16-19
4 	 Flow Direction
i * t i i i
f/ - 14.0
* ' Snake River
i i i \ i i
/f - 4.0
5.6 - 8.0
, ., -, , 10.0
\ • I \ 1 1
4.2 5.0
3.0 3.0
. ,, 3.0 , 3.0
f /
1 ' ' ' * •
' ' 2.0 4.0
0 2.0 6.0
. ., 1.0 , 0
i , / i i i
;I o o
00 0
i^O, , 0

/' 0 0
00 0
, .. 0, ,0

! ' 0 0
Clearwater
River
/- /North shore
14.0
16.0^
14.0

South shore
4.0
20.0
6.0,
A
0.8
0
0 ,
A
6.5
3.0
0 ,
A
18.1
0
0 ,
A
5.0
0
0 i
A
6.0
0.5
0 ,
8.0
V
0
.5/
0
V
0
V
0
V
0

                       ICT             5              0

                  KILOMETERS BELOW SNAKE -CLEARWATER CONFLUENCE
Figure A-4a.  Cross-channel carbon dioxide patterns (rag/L free CC^) in
              the Snake and Clearwater Rivers during adult steelhead
              migration, 1969.
                                     72

-------
4 	 p|ow
I // i i
;' 2.0 1.2
Sept. 4-18 0.5
, ,, 1.1 , 1.8
~~* Snake
Oct. 15 0 0
to 2
Nov. 7 , jt o , 0
Direction
3.8
, 0.5
River
t
7.1
i 0
Clearwater
River
/4.5 /North Shore
0
i
South Shore
/o/
0

/' 1.5 1.7
Nov. 1-25 2
I 0 , 0
6.0
i 0
0
f
             35        10             5             0

            Kilometers Below Snake-Cleorwater Confluence

Figure A-4b. Cross-channel  carbon diexide patterns (mg/L free C02)
            in the Snake and Clearwater Rivers  during adult, steel-
            head migration, 1970.
                                   73

-------
     Sept 2 -8
    Sept. 8-10
               1    » M
   Sept. 21-24
     Oct. 8-22  .
                                 •Flow Direction
                                 Snake River
                                                      Cleorwoter
                                                      River
                                 / o  A
                                                         North Shore

0
1
" 0

,, o ,
0

0
0

• o

0
1
                                       South Shore
                                                   A/

0
1
" 0

t . 0 i
0

0
0

t 0

0
1 •

0
1
"0

.. o ,
0

0
0

i 0

0
,
" 0
i j, 0 I
0
0
0
I 0 I
     Nov. 4-11
   0


..  0  ,
0


0
0


0
               1   ff  1

0
1
" 0


0

o
0

0

0
	 1 	
     Dec. l-tl
              35        10             5              0

             Kilometers Below Snake -Clearwater Confluence


Figure A-4c.  Cross-channel carbon  dioxide patterns (rag/L  free C02)
             in the Snake and Clearwater Rivers during adult
             steelhead migration,  1971.
                                   74

-------
 July  1-2
 July 22-24
 Aug. 11-13
 Aug.  26-28
 Oct.  14-16
Nov.  11-16
Dec. 16-19


1 If—
71
i . ,
i * f
116

1 / y
i 1 1
101
i it
i f
i ,* *
109
w r~
f 9
4
' i
i
-

-

-
i
117
122

113
112
114

127
126
Clearwater
River
| 	 Flow Direction / /


Snake River South shore
. /- /
75 40
85 72 83
105 80 ,
. /,/
- 32
• - 200 .
Ao /
- 45
- 100
• - 120 ,
. A/
110 47
113 128 133
r 123 135 ,
/4/
95 23
104 111 134
125 131 ,
/„/
114 24
- 112 144
142 139 ,


Figure A-5a.
  35  "    10             5             0

      KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Cross-channel bicarbonates patterns  (mg/L CaC03) in the
Snake and Clearwater Rivers during adult steelhead
migration, 1969.
                                      75

-------
Sept. 4-18
Oct. 15
Nov. 7
Nov. I -25
^ 	 Flow Direction
89 84 78
102
i ,,91 i 88 , 96
Snake River
" 138 127 116
i ,,143 i 142 , 162
Cleorwoter
River
/ /
/ 27 /North Shore
150
South Shore
A/
126
i
/2o/
S' 72 69 45
115
, ,,110 , 107 , 128
126
	 1 	
              35        10              5              0

            Kilometers Below Snake-Clearwater Confluence

Figure A-5b. Cross-channel bicarbonates patterns (mg/L  CaCOo)
            in the Snake and Clearwater Rivers during adult
            steelhead migration,  1970.-
                                   76

-------
     S«pt.2-8
    Sept. 8-10
  Sept. 21-24
     Oct. 8-22  _
     Nov. 4-11  _
     Dec. l-ll
t If 1
'86
100
, .B5 ,
l . . i
"96
100
• , 97 i
/ /
93
i / / i
"104
i , 116 i
i , . i
i . 148 ,
Clearwater
River
«— :Flow Direction ( /21 yiorth Shore
80 69
101
78 , 89 ,

Snake River South Shore
. A/
99 86
101
95 i 99 •
A/
95 85
111
92 , 97 ,
/-/
113 107
113 i 113 i
/-/
144 139
148 t 143 i
* W
/
-------
July 1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16

49

53
,

91
4
•~Tt t '
54
ft
t m I


" 75
78
. , 83,
	 Flow Direction
• i
32
65
Snake River
• I
73
85
85
1 1
70
73
90
Clearwater
River
/ - /North shore
32
58
65,

South shore
25
54 80
fia ,
/20 /
27
90
94,
.... . /23 /
90

112
	 L_
'
126

-
' ' 95
97

" 115
, . 113,
f i
ff 120
119
./ 123,
. . i

100
105
120

118
119
137
• i
131
105
137

•
40
105 105
/»/
54
125 138
131,
A/
25
154 142
138,
/ /
28
131
155 ,

Dec. 16-19
             ____!—/ /
                35      10             5              0

                    KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-6a.  Cross-channel total hardness patterns  (mg/L CaCO,) in the
              Snake and Clearwater Rivers during adult steelhead
              migration, 1969.
                                      78

-------
^^^^^^^f t \
93
Sept. 4-18 gg
1 /' 95 i
| it \
Oct. 15 95
to 120
Nov-7 , ,,120,
1 // '
!' 86
Nov. 1-25 120
, ,, HI,
< 	 Flow
i
95
97
Snake
i
117
118
i
63
113
Direction
85
i 105
River
72
i 137
i
37
, 138
Clearwater
River
A /
/ /North Shore
110
i
South Shore
A/
130
i
A/
130
               35        10             5              0

             Kilometers Below Snake-Clearwater Confluence

Figure A-6b.  Cross-channel total hardness  patterns (mg/L  CaCOo)
             in the Snake and Clearwater Rivers during adult steel-
             head migration, 1970.
                                   79

-------
   Sept. 2-8  -
  Sept. 8-10 -
Sept. 21-24
  Oct. 8-22  -
  Nov. 4-1
   Dec. I-I
Clearwater
River
, .. , ^—7 Flow Direction ( /34 /orth Shore
70 70
... 76, 73
Snake River
' // ' '
"99 95
i / , TOO r 10S i

" 104 105
102
r 112 , 108
/ /
60
98
82

South Shore
, A/
93
98
im i
. A/
94
116
103 ,
i >i I i I / ~ /
"128 122
i .128 , 133 i
1 J-J. ' I
"146 138
, .3-53 , 148
1 // ' '
"139 135
164
i ,141 . 146 i
118
127 i
i / /
141
153 ,
^J»/
125
167
150 i

Figure A-6c
            35        10              5              0

          Kilometers Below Snake-Clearwater Confluence

          Cross-channel total hardness patterns (rag/L  CaCOo)
          in the Snake and Clearwater Rivers during adult
          steelhead migration, 1971.
                                 80

-------
                                                      Clearwater
 July 1-2
 July 22-24
 Aug.  11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
Dec. 16-19
                                    Flow Direction
                                        7ver/
                                        /-  A

1 y . 1
1 11 ~ 1
Snake River
i i / "
• ~ ~ i
South
-
/ /

1 , . 1
ff 142
142
• ., 142
j 	 l — //- L
ff 157
134
1 |/ y 1
f 152
171 158
• ,. 151
. /„
141 37
142 142
• 14S 14S,
/.
153 92
155 156
167 171 ,
/7
141 23
145 165
165 172 i
/
148
/
170
/
175

1 Xj* " 1
19
- 148
- 182 ,
149
                                                            orth shore
Figure A-7a.
    35       10            5             0

        KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Cross-channel total dissolved solids  patterns  (mg/L NaCl)
in the Snake and Clearwater Rivers  during adult  steelhead
migration, 1969.
                                        81

-------
Sept. 4-18
Oct. 15
  to
Nov. 7
1 . ,
114
	 1 	 yi—
j— l f *-
182
i 1 1
i . /
182
i if
Clearwater
River
-4 	 Flow Direction / /
• . 719 /North shore
154
124,
142 138
125
122 , 163

Snake River South shore
. . . A/
230
iai,
i
90
140
215 190
217
188 , 150 •
/33/
111 52
240
165 , 178 ,

Nov. 1-25
              35       10              5              0

                  KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-7b.  Cross-channel total dissolved solids patterns (mg/L NaCl)
              in the Snake and Clearwater Rivers during adult steelhead
              migration, 1970.
                                     82

-------
                                                          Clearwater
                                      Flow Direction
 Sept. 2-8
 Sept. 8-10
 Sept.  21-24
 Oct.  8-22
Nov. 4-11
Dec. 1-11
i L f ' ! L
i{ 89
~
go
• . i yy i

I / / '
' ' 155
~
, . . 129i

f' 186
202
, ., 12$

i .t \
" 175
, .. 171,

i it \
" 188
, ft 196,
i
99

96

,
155

121
i
143

168


171
166

i
182
190
1
70

124
Snake River

124

97

149

157

1
180
17S

i
173
187
_/ 22 /North

123

South
721 /

128
1
A/

143


/- /



/- /

I

//r 166
200
• ,.168,
172
182
186
207
205
                 35
                      '
                          10
                                                                     shore
                      KILOMETERS BELOW SNAKE -CLEARWATER CONFLUENCE
Figure A-7c
              Cross -channel total dissolved solids patterns  (mg/L NaCl)
              in the Snake and Clearwater Rivers during adult steelhead
              migration,  1971.
                                      83

-------
July 1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
4
1 It 1
fr 0
.06
.1 0 •
J * y I
.22
• - / 1
" .80
.77
. . , .8L
f f • t
" .39
.39
1 Ml \
" .59
.22

.53
.51 .51
1 // -*7'
	 Flow Direction
l •
1.20
.90
Snake River
i —

1.11
.49
.10
1 1
.78
.64
• i
.83
.78
.30
• i
.71
:S
Clearwater
River
	 / ~ /North shore
1.18
0
.9.0

South shore
1.00
.70 .10
.4n
/.«,/
.47
.39 .04
/60 /
.99
.85 .75
.41
/73/
.80
1.08 .23
.20
/54/
.74
.61 .20
.20
/6o/
ft .42
, .f .6L
.82
.59
1.13 .20
.22

Dec. 16-19

                 35 "     10            5             0

                    KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-8a.  Cross-channel tannins and lignins patterns (mg/L Tannic
              Acid) in the Snake and Clearwater Rivers during adult
              steelhead migration, 1969.
                                      84

-------
Sept. 4-18
Oct. 15
to
Nov. 7
Nov. 1-25
* 	 Flow Direction
i » i i i i
Cleorwater
River
/ - /North Shore
" .2(3 .40
. ,,- , -60
Snake River
l if l i i
South Shore
/-/
" .20 .39 .45
i ,,.42 i .35 i 0 i
i f , \ i i
" .39 .99 .61
i ,,.61 i .59 i .02
y-/
i
               35        10              50

             Kilometers Below Snake-Clearwater Confluence

Figure A-8b.  Cross-channel  tannins and lignins  patterns (mg/L
             Tannic Acid) in  the Snake and Clearwater Rivers
             during adult steelhead migration,  1970.
                                     85

-------
      Sept 2-8
..05

.01
                                   Flow Direction
                                                 '
.20

.34
.20

.01
                                                         Cleorwater
                                                         River
                                  / -   /N
                            North Shore
                                   Snake River
                                        South Shore
     Sept. 8-10  -
"1.60
, ,*.58,
1.70
1.68 ,
1.85
1.43 , . "
   Sept. 21-24  -
7 1.61
i .1.62.
1.60
1.69 i
1.90
1.70 i
      Oct. 8-22  .
".10
i ,,08 i
0
.13 i
0
.05
i
                 1        '
      Nov. 4-11 _
.02
, ..01 ,
.01
.02 ,
.02
.01 i
i ff i
'1.10
• //«80 i
i
1.50
1.40 i
i / /
2.00
1.40 i
       Dec. l-ll -
               __,	7/.8Q  t	1.40    i      1.40
                35         10              5               0

               Kilometers  Below Snake-Clearwater Confluence

Figure A-8c.  Cross-channel tannins and lignins patterns (mg/L
              Tannic Acid) in the Snake and Clearwater Rivers
              during adult steelhead migration, 1971.
                                         86

-------
 July 1-2
 July 22-24
Aug.  11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
Dec. 16-19
                                  •Flow Direction
                                       Clearwater
                                       River
                                      /  -  /North  shore
9 "
11 //
1 L* f~
21

31
L • t t

1 I* *
39
	 1 — / A-
I , /
45
• / /
	 1 — //_
10
18,

"**

26
24
24,

31
31

43
42 ,

- i

w
12
22
Snake River
t \
21
27
30

18
21
25

20

40
43
49

-

	 1 	 "
12
14
22 ,

South shore
ii . 19
/* /
3
22 25
22 ,

8
\\ . 37

9
39 48
48 ,

7
43 46
46 ,
/- /
8
37 ,

Figure A-9a.
  35  "    10            5             0

      KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Cross-channel sulfate patterns (mg/L SO/) in the Snake
and Clearwater Rivers during adult steelhead migration,
1969.
                                       87

-------
Clearwoter
River
* — -Flow Direction A°/°rth shore
i / / i i i / /
Sept. 4-18
r f
34.5 34.0
i j i- i - i - i

Snake River South Shore
/••/
i ,* i i i — / /
Oct. 15
to
Nov. 7
Nov. 1-25
" 33.0 33.0 28.0
19.1 20.8
i ,,34.0t 33. Q i 37.0 I
w f
i i /2-8/
1 / t 1 • ' ^^^j ^^^^_
r/- - 13.0
19.1 20.8
i //" i " i " i

               35        10             5              0

             Kilometers Below Snake-Clearwater Confluence

Figure A-9b.  Cross-channel sulfate  patterns  (mg/L  SO^)  In the
             Snake and  Clearwater Rivers  during adult steelhead
             migration,  1970.
                                      88

-------
   Sept 2-8
  Sept. 8-10
Sept. 21-24
  Oct. 8-22  -
  No* 4-11  _
  Dec. I'll

31.0
i
r
31.0
. 1
V '
"17.5
18.0,

"31.0
,,34.0,
Clearwater
River
«— TFlow Direction § /Q /orth Shore
17.0
18.0
Snake River
35.0
31.0 ,
13.5
31.5
20.5 ,

South Shore
32.0
33.0 . . 31'5
1 * * \ 1 1 / /
36.5

-

i 1
i
51.0
"22.0
23.0,
// '
"27.0
,,26.0i
// '
"28.0
y.27.0 1
9 f
f . \
"25.0
,,25.01
25.0
22.0 ,
i
27.0
28.0 i
i
25.0
22.0 i
i
28.0
25.0 ,
42.0
22.0 ,
, •/•/
27.0
28.0 i
/-/
27.0
30.0 i
/«/
25.0
51.5
28.0 ,


               35
                     10
Figure A-9c.
          Kilometers Below Snake -Clearwater Confluence

          Cross-channel sulfate   patterns  (mg/L  SO.) in the
          Snake and Clearwater Rivers during adult steelhead
          migration, 1971.
                                   89

-------
July 1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
^t Flow Di VPO t"i on

Clear-water
7" 'ver
- /North shore
1 r// - ' ' - 1
Snake River
1 y / 1 1 i
'' - .05
.04
. ,, -. , .01
1 / / 1 1 1
" .16 .08
.17 .04
i ,i .16 , Tr

/7 .29 .59
•31 '57
, ,, .32 , .54

f/ • .16
.13
co no
1 . / . J* i . Uj

South shore
.12
.13 .13
.16 ,
/23 /
.13
.05 .20
.07 ,
/75/
.63
:S . M
/55/
.01
.21,

/;/ 0 .15
.14 .07 .13
i /, -OS , 0
.29
.18 0
/17/
' ' .24
, . , .28 , .24
.45
.38 .26
.24 ,

Dec. 16-19

                35 ' '    10             5             0

                    KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-lOa.  Cross-channel ammonia patterns (rag/L NH,) in the Snake
               and Clearwater Rivers during adult steelhead migration,
               1969.

              *Tr = Trace
                                       90

-------
Sept. 4-18
Clearwoter
River
, „ , «—;Flow Direction ( /oi/orth Shore
.03 .05
.02 .04
, ,, - , -06 ,

Snake River South Shore
A/
i , , I i i / /
Oct. 15
to
Nov. 7
Nov. 1-25
"00 0
Tr Tr
i . . 0 i 0 i 0 i
/°2/
i .. \ i i / /
".23 .20 .14
Tr Tr
i v-10 i .09 , .02 ,

               35
10
              Kilometers Below Snake-Clearwater Confluence

Figure A-lOb. Cross-channel  ammonia patterns (mg/L  NH.,) in the
             Snake and Clearwater Rivers during adult steelhead
             migration,  1970.

            *Tr = Trace
                                      91

-------
      Sept. 2-8
     Sept. 8-10
    Sept. 21-24
     Oct. 8-22  -
      Nov. 4-1
      Dec. l-ll
Cleorwoter
River
t t *— 7Flow Direction § / /or(h Shore
.13 .19
0
, ,/15 , .10
Snake River
' .51 .49
0
• / »46 i .49 •

•^ .22
.058
i .,26 , .30
i / / i i
".25 .24
.1 -*26 i .24 i

j f. - • - •
i • . i i
".14 .15
.74
, ..15 . .14
.14
Tr
.07

South Shore
1 / /
.53
Tr
.39 i

.25
.54
.19
, //
.26
.22 .


_y°/
.20
.09
.14

               35
10
              Kilometers Below Snake-Clearwater Confluence

Figure A-lOc. Cross-channel ammonia patterns  (mg/L  NHO in the
             Snake and Clearwater Rivers  during  adult steelhead
             migration, 1971.

            *Tr = Trace
                                       92

-------
 *July  1-2
 *July 22-24
 *Aug. 11-13
 Aug.  26-28
 Oct.  14-16
Nov.  11-16
Dec. 16-19
                                      Flow Direction
 27
       27

       24i_
31
                    ~ /
                   I   I	•
8.0
      9.3
      9.0
                  . _ . .
                                    Clearwater
                                    River
                                   / - /North shore
   8   8

  2	L
                                     Snake  River
                                        South shore
                             38
                             35
                             32
                                                       „/
1
-//_
18
17 -
16 -
13 - ,
20

10


.0
ft
io
-
9
.0

.3
7
7
11
.0
.5
,5
7.0
5.8
11.0,

11


.5

12.5  6.0
 9.5  8.0
10.0 10.S.
                                             3.3
                                        9.0
                 35      10            5             0

                    KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-lla.  Cross-channel transparency patterns (Secchi Disc feet)
               in the Snake and Clearwater Rivers during adult steel-
               head migration, 1969.

              *indicates turbidity readings in JTU's.
                                      93

-------
* 	 Flow
i , , i i
6.5 6.0
Sept. 4-18 9.0
\ //6.5 i 6.0
Snake
1 // ' '
Oct. 15 '-/ / 7.1
to
Nov-7 i //8.0 i 7.8
Direction
6,2
i fi.S
River
6.7
i 8.9
Clearwoter
River
/ " /North Shore
t
South Shore
-
/-/
//f1.9 1.2
Nov. I -25 -
. ,,2.0 , 1.9
1.1
, 7.0
i
              35        10             5              0

             Kilometers Below Snake-Clearwater Confluence


Figure A-llb. Cross-channel transparency patterns (Secchi Disc  feet)
             in the  Snake and Clearwater Rivers during adult  steelhead
             migration,  1970.
                                      9A

-------
Sept. 2-8
Clearwater
River
, .. , 4-7 Flow Direction ( /o.o/Lh shore
5.0 4.5 4.3
i ,5.2 i 5.0 i 5.0 i

Snake River South Shore
i .. i • , /O.O/
Sept. 8-10
Sept. 21-24
Oct. 8-22
Nov. 4-11

Dec. 1-11
7'7.5 6.0 6.0
10.0
, ,8.5 , 8.0 , 10.5 ,
f f
7.5 9.0 8.0
7.5 11.0
i .7-5 , 9.0 , 10.0 ,

"7.0 7.2 7.0
7.4
i .7.0 i 7.0 i - ,
1 ** 1 1 I / " f
"6.8 6.8 5.3
. >.- i 7.0 i 5.9 i
I ,, i f i 73.2 /
"5.5 7.0 4.5
2.2 7.0
i ,6.0 i 6.0 i 8.0 i


               35       10              5              0

             Kilometers Below Snake-Clearwater Confluence

Figure A-llc. Cross-channel transparency  patterns (Secchi Disc feet)
             in the  Snake and Clearwater Rivers during adult steelhead
             migration,  1971.
                                     95

-------
July 1-2
July 22-24
Aug. 11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
Dec. 16-19
                                  •Flow Direction
                                      Clearwater
                                      River
                                     / -  /North shore
	 1 	 Jf 	 !=_l 1 ,
Snake River Soutl
	 . /. /
2.0 <1.0 - 3.0 3.0
- r // i - 4.0.
i '., • , , /O /
" 1.0 30.0 0
7.0 2.0 41.0 2.5
i ,, Q.O , 0 4.0
. r . . . /..o /
0 0 0.6
2.0 41.0 2.0 0.8
-i— -f f n ' i &.n n.o .
	 /- /
" 41.0 2.0
41.041.0 41.0
i // -i , - - .


	 /.,/
' 2.0 42.0 1.0
1.0 - - 3.0 0.5
, .; 1.5, , 9.0 12.0

i shore











Figure A-12a,
  35      10             5            0

     KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Cross-channel Pearl-Benso'n Index patterns (mg/L Standard
Calcium Spent Sulfite Liquor Solids) in the Snake and
Clearwater Rivers during adult steelhead migration, 1969.
                                       96

-------
Sept. 4-18
Oct. 15
to
Nov. 7
Nov. 1-25
^ 	 Flow Direction
i ft \ \ \
Clearwater
River
/ ~ /North Shore
"3.0 3.0 12.0
i ,,7.0 i 5.0 , 4.0 ,
Snake River
\ it \ i i
- 0 3.0
i ,,5.0 i 8.0 i 4.0
South Shore
i
/ f
'7.0 4.0 50
i ,,3.5 , 5.0 , 1.5 ,
               35        10              5             0

             Kilometers Below Snake-Clearwater Confluence

Figure A-12b. Cross-channel  Pearl-Benson Index patterns  (mg/L Standard
             Calcium Spent  Sulfite Liquor Solids)  in  the  Snake and
             Clearwater Rivers during adult steelhead migration, 1970.
                                      97

-------
      Sept. 2-8  -
     Sept. 8-10  -
   Sept. 21-24  -
     Oct. 8-22  _
                                                  Cleorwoter
                                                  River
                               Flow Direction
                  /_  /N
                                                     North Shore
''7.0
_
, ,.4-0 ,
13.0

10.0 ,
4.5

7.0

4.5
i
                               Snake River
                        South Shore
"7.0
_
l /IP • 0 i
2.0

5.5 i
0

3.0

2.5
i •
''8.0
• 9.0 .
9.0
14.0 ,
8.0
9.0
                                           ^J'*L
                        1.5
                                               /••L
"4.0
_
i ,A.5 i
5.0

8.0 t
14.0

7.0

1.0
i
      Nov. 4-11  .
"10.0
i ,. 5.0 i
6.0
4.0 •
7.0
7.5 i
Dec. l-ll
                   2.0

                  ,J6.0 i
                              \
6.0

5.0
                                           ^J>
23.0

 6.0

               35       10            5             0

             Kilometers Below Snake -Clearwater Confluence

Figure A-12c.  Cross-channel Pearl-Benson Index patterns  (rag/L Standard
             Calcium Spent Sulfite Liquor Solids) in the Snake and
             Clearwater Rivers during adult steelhead migration, 1971,
                                    98

-------
                                                    Clearwater
 July 1-2
 July  22-24
Aug.  11-13
Aug. 26-28
Oct. 14-16
Nov. 11-16
                                  Flow Direction
 River
/.  A
                                                          orth  shore
1
1
29

-
/ / ~ *
f f '
22
v / " '
f f 1
" 51
40
., 53 ,
-
Snake River
i i
"•

61
38
31
"* I

South shore
33
32 22
37 •

44
52 41
50 ,
\ t i \ i i / .c J. /
-
" 35
33
42
41
30
39 48
. /./
i

169
I
i
90
—ff " '
r f
• i i
" 98
114
,. 79 ,
m f 1
// 82
tf 78 ,
-
I i
77
109
126

83
82
-
A/
68
52 100
95 ,
L/
37
79 48
102 i

Dec. 16-19
                ,  ff a
               35^    10            5             0

                  KILOMETERS BELOW SNAKE-CLEARWATER CONFLUENCE

Figure A-13a.  Cross-channel Total Volatile Matter patterns (mg/L Total
               Volatile Matter) in the Snake and Clearwater Rivers
               during adult steelhead migration, 1969.
                                     99

-------
* 	 Flow
i if i i
172 171
Sept. 4-18 159
1 ,,190 i 115
'' Snake
1 iV ' ' '
Oct. 15 173 93
to 90
Nov. 7 , 225 f 187

"175 78
Nov. 1-25 95
1 // 74.,|,,
Direction
229
i 138
River
•
1035
i 100
i
80
158
Clear water
River
/ 24/^Jorth Shore
i
South Shore
A/
85
i
/»/
183
•
                35 "     10             5              0

              Kilometers Below Snoke-Clearwater Confluence

Figure A-13b.  Cross-channel Total Volatile  Matter  patterns (mg/L
              Total  Volatile Matter) in the Snake  and Clearwater
              Rivers during adult steelhead migration, 1970.
                                       100

-------
      Sept. 2-8  -
     Sept. 8-10
   Sept. 21-24
     Oct. 8-22  _
      Nov. 4-11  .

1 If \
"238
, ,220 ,

i , . i
"125
142
, , 155 •
i r
1 //u_ f
' 163
90
i ,174,
if
.
80
i ,^59 i
i f , i
"213
i .161 i
i , , i
'311
• ,329 i

Clearwater
River
4 — - Flow Direction ( /- y(orth Shore
211
97
Snake River
i
116

102 i

i
107

196 ,

i
90
192 i

260
102 i
i
312
254 i
182
159 ,


South Shore
. /" /
92
-
131 •




. /../
173
247
97 i




i / /
118
132 i


i / £
260
2$** '


, A/
299
420 i


      Dec. I "I I
                35        10              5              0

              Kilometers Below Snake-Clearwater Confluence

Figure A-13c.  Cross-channel Total Volatile Matter patterns  (mg/L
              Total Volatile Matter) in the Snake and Clearwater
              Rivers during adult steelhead migration,  1971.
                                       101

-------
SELECTED WATER
RESOURCES ABSTRACTS
INPUT TRANSACTION FORM
1. Report No.
                    W
-?.  Thl?
   Pollution Effects  On Adult  Steelhead  Migration In
   The Snake River
                   . 5.  Report Date

                    6,
                    S,
   Falter,  C.  M.  and Ringe, R. R.
   University of Idaho
                                                                  Report No*
                        ~f/j<:•{':,: ft";,,

                        18050 DMB
                   j 7,  Type .
                                                                            A. and
   Environmental Protection Agency report number,
   EPA-660/3-73-017, February 1974.
16.
   We  conducted a three-year field study in 1969-1971 to assess the rela-
   tionship  of Kraft mill effluent and pre-impoundment water quality to
   adult  steelhead trout (Salmo gairdneri Richardson) behavior in the Snake
   River,  Idaho-Washington.   Steelhead were tagged with ultrasonic tags and
   followed  through a 25 km section of the proposed Lower Granite Reservoir.
   We  measured limnological parameters and compared with fish behavior. Mix-
   ing patterns of the Clearwater River with the Snake River were also
   assessed.
   Mean water quality changes in the Snake River as a result of pollution
   inputs  in  the study are very subtle.  In terms of toxic effects from
   chemical  loading,  Snake River water quality is not greatly altered ex-
   cept in the immediate area of pollution input; we did not observe steel-
   head avoidance of these localized problem areas.
   No  significant correlation could be made between any chemical water qual-
   ity parameter and steelhead behavior. However, as temperature dropped be-
   low 15  C fish movement slowed, fish generally stopped moving at night, and
   resting periods increased in length and number.  Steelhead showed a pref-
   erence  to  move in water with off-bottom current velocities of 0.2 to 0.5
   m/sec and  showed a definite pattern of crossover and resting points,
17a. Descriptors
    /*Steelhead  trout/*Kraft  mill effluent/oxygen/water pollution effects
    /*migration  behavior/water temperature/water velocity/*ultrasonic
    transmitters/pre-impoundment water quality


17b. Identifiers

    Snake River/Idaho-Washlngton/Lewiston,  Idaho/anadromous fish/migration
l~c. COWRK Fit'tJ & Grour
                      •>'& -1A
                                                    Send To:
                                                    WATER RESOURCES SCIENTIFIC INFORMATION CENTER
                                                    U.S. DEPARTMENT OF THE INTERIOR
                                                    WASHINGTON. D. C. 2O24O
         falter, c. Michael        | ;f,4f,-f...t,OJ, university of Idaho

-------