EPA/600/R-01/072
                                                           September 2001
One-Dimensional Hydrodynamic/Sediment Transport
                Model for Stream Networks
                                By


     Earl J. Hayter1, John M. Hamrick2, Brian R. Bicknell3, and Mark H. Gray4
                  ^U.S. Environmental Protection Agency
                   Office of Research and Development
                  National Exposure Research Laboratory
                      Ecosystems Research Division
                      Athens, Georgia  30605-2700

                           2Tetra Tech, Inc.
                      10306 Eaton Place, Suite 340
                          Fairfax, VA 22030

                      3Aqua Terra Consultants, Inc.
                      2685 Marine Way, Ste. 1314
                    Mountain View, CA 94043-0706

                      4Aqua Terra Consultants, Inc.
                   150 E. Ponce de Leon Ave., Ste. 355
                       Decatur, GA 30030-2553
                  National Exposure Research Laboratory
                   Office of Research and Development
                  U.S. Environmental Protection Agency
                    Research Triangle Park, NC 27711

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Notice

The U.S. Environmental Protection Agency through its Office of Research and Development
funded and managed the research described here under contract (68-C-98-010; Work
Assignment 2-08) to Aqua Terra Consultants, Inc.  It has been subjected to the Agency's peer
and administrative review and has been approved for publication as an EPA document.  Mention
of trade names or commercial products does not constitute endorsement or recommendation for
use.
                                          11

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Abstract

This technical report describes a new sediment transport model and the supporting post-
processor, and sampling procedures for sediments in streams. Specifically, the following items
are described herein:

•      EFDC1D - This is a new one-dimensional hydrodynamic and sediment transport model
       that can be applied to stream networks. The model code and two sample data sets are
       included on the distribution CD. The User Manual is published as a separate report
       (Hamrick 2001). EFDC1D can simulate bi-directional unsteady flows and has the ability
       to accommodate unsteady inflows and outflows associated with upstream inflows, lateral
       inflows and withdrawals, groundwater-surf ace water interaction, evaporation and direct
       rainfall. The model also includes representation of hydraulic structures such  as dams and
       culverts. For sediment transport, the model includes settling, deposition and  resuspension
       of multiple size classes of cohesive and noncohesive sediments. The bed  is represented
       by multiple layers of mixed sediment classes. A bed consolidation model is implemented
       to predict time variations of bed depth, void ratio, bulk density and shear strength. The
       sediment bed representation is dynamically coupled to the cross-sectional area
       representation to account for area changes due to deposition and resuspension.

•      GenScn - The interactive computer program GENeration and analysis of model
       simulation SCeNarios (GenScn) was modified to read in one of the output files from
       EFDC1D, namely the "dumpld.out" file. This files contains simulated time series of
       parameters such as water surface elevation, temperature, salinity, discharge,  cross-
       sectional area and wetted perimeter, concentrations of suspended cohesive and non-
       cohesive sediment, and average bed shear stress at each computational cell. Time series
       plots of these parameters can be generated for any computational cell. The modified
       version of GenScn is also included on the distribution CD.

•      Another task in this project was to link the EFDC1D hydrodynamic and sediment
       transport model with HSPF (Bicknell et al. 1997) to provide a more valid flow/sediment
       transport modeling tool for development of TMDLs in watersheds that experience
       significant nonpoint source impacts. While complete integration of EFDC1D with HSPF
       is feasible, it is a task that requires: 1) additional study to determine the advisability and
       method of integration, 2) additional 1-D model code testing and refinement,  and 3) more
       resources than were available  in this  effort. As such, a linkage program was  developed to
       reformat the output of HSPF for subsequent input to the stand-alone EFDC1D model.
       This linkage program is also included on the distribution CD.

•      To perform sediment transport modeling, a comprehensive  set of hydrologic, hydraulic,
       and sediment data must be collected/measured in the water body to be modeled. A
       generic field study work plan, including sampling procedures, is given as an  example of
       the type of field study that  should be performed to collect these data.
                                          in

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Foreword

The National Exposure Research Laboratory's Ecosystems Research Division (ERD) in Athens,
Georgia, conducts research on organic and inorganic chemicals, greenhouse gas biogeochemical
cycles, and land use perturbations that create direct and indirect, chemical and non-chemical
stresses, exposures, and potential risks to humans and ecosystems. ERD develops, tests, applies
and provides technical support for exposure and ecosystem response models used for assessing
and managing risks to humans and ecosystems, within a watershed / regional context.

The Regulatory Support Branch (RSB) conducts applied research and development, and provides
technical support and assistance to customer Program and Regional Offices, States,
Municipalities, and Tribes. As an outreach for ERD research on the occurrence, movement,
transformation, impact, and control of environmental contaminants, RSB develops management
and engineering tools to help environmental resource managers achieve environmental goals
through comprehensive watershed management. Exposure models are distributed and supported
via the EPA Center for Exposure Assessment Modeling (CEAM).

The development and release of EFDC1D and the supporting programs described herein is in
support of the Agency's Total Maximum Daily Load (TMDL) program as required by the Clean
Water Act. EFDC1D is a state-of-the-science one-dimensional hydrodynamic and sediment
transport model that can be used to model sediment impacted streams and rivers for
determination of sediment TMDLs.  The development of EFDC1D was funded by EPA's Office
of Research and Development (ORD), but resulted from a cooperative effort between ORD and
the Office  of Water's Office of Science and Technology.

                                       Rosemarie C. Russo,  Ph.D.
                                       Director
                                       Ecosystems Research Division
                                       Athens, Georgia
                                         IV

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                                  Table of Contents

Contents

Notice	  ii

Abstract 	iii

Foreword  	iv

I.      Introduction	1
       LA    Background  	1
       IB    Project Objectives 	3
       1C    Technical Approach	3

II.     One-dimensional Hydrodynamic and Sediment Transport Model  	6
       II.A.   EFDC1D  	6
       II.B   GenScn	8
       II.C   Report on Linkage of EFDC1D to HSPF  	12

III.    Field Sampling Procedures for Sediments	23
       III. A  Field Work Plan	23
       III.B   Rain-event Sediment Sampling Procedures	27

Appendices

A     Contents on Distributed CD	29

B      Instructions for using EFDC1D visualization software (GenScn)	30

References 	32

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I.      Introduction

LA    Background

        Excessive loads of nutrients, sediments and pathogens are being transported by overland
drainage and riverine flow to many lakes, reservoirs and estuaries. The Clean Water Act of 1987
(CWA) requires the EPA to develop, revise and review effluent limitations and standards for a
technology based industrial point source water pollution control program under Section §304(m).
Additionally, for water bodies, e.g., streams, rivers, lakes, reservoirs and estuaries, that have
been classified by State Environmental Regulatory Agencies as impaired, Section §303(d) of the
CWA requires the States to develop Total Maximum Daily Loads (TMDLs) for the
contaminant(s) of concern (COC) considering point sources, nonpoint sources, and a margin of
safety for uncertainty. The goal of TMDL analysis is to provide a defensible, scientific approach
that the States can use to establish water quality based controls for impaired waters.  The main
goal of sediment TMDL analysis is to protect designated or existing uses of natural resource
systems in watersheds by:

a.      Characterizing properly functioning watershed processes that influence the erosion,
       transport and storage of sediment;

b.      Evaluating the degree to which the current and expected future functioning of these
       processes is impaired. The impairment usually results from the transport of excessive
       sediment loads to water bodies (e.g., streams, lakes) within the watershed. The  excess
       sediment loads are usually generated by changes in watershed processes that result from
       both natural (e.g., wildfires) and anthropogenic (e.g., logging, agriculture) causes; and

c.      Identifying land and water management restoration actions that should be implemented to
       restore the proper functionality of the impacted watershed processes.

       The Better Assessment Science Integrating Point and Nonpoint Sources (BASINS) was
developed to aid States in the targeting and assessing water body segments which fail to meet
water quality standards.  In addition, BASINS also helps in TMDL development by providing
nonpoint and water quality modeling tools. These tools make it possible to predict the effect of
allocating allowable pollutant loads among point and nonpoint sources with the goal of meeting
water quality standards.  BASINS is suitable for many other applications beyond developing
TMDLs. Its wide variety of data layers, modeling tools, its ability to query the underlying
databases, and its capability to display the results on a map gives it broad applicability for
watershed management or community-based environmental protection.  Since BASINS is built
on Arc View, an industry standard GIS platform, users can also incorporate their own data to the
system so that BASINS will more accurately represent local conditions.

       BASINS is a suite of interrelated components developed to perform watershed  and water
quality analysis. These components are grouped into five categories: (1) national databases; (2)
assessment tools (TARGET, ASSESS, and Data Mining) for evaluating water quality and point

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source loadings at a variety of scales; (3) utilities including local data import, land-use and DEM
reclassification, watershed delineation, and management of water quality observation data; (4)
watershed and water quality models including NPSM (HSPF), TOXIROUTE, and QUAL2E; and
(5) post processing output tools for interpreting model results. The databases and assessment
tools in BASINS are directly integrated within an Arc View GIS environment.

       The Nonpoint Source Model (NPSM) in BASINS is HSPF (The Hydrological Simulation
Program - FORTRAN).  HSPF is a set of computer codes that can simulate the hydrologic, and
associated water quality  for both conventional  and toxic organic pollutants, processes on
pervious and impervious land surfaces, and in streams and well-mixed impoundments. HSPF
incorporates watershed-scale ARM and NFS (nonpoint source) models into a basin-scale
analysis framework that  includes fate and transport in one-dimensional stream channels.  It is a
comprehensive model of watershed hydrology  and water quality that allows the integrated
simulation of land and soil contaminant runoff processes with in-stream hydraulic and
sediment-chemical interactions.  The result of this simulation is a time history of the runoff flow
rate, sediment load, and nutrient and pesticide concentrations, along with a time history of water
quantity and quality at any point in the modeled watershed. HSPF simulates the transport,
deposition and scour of three inorganic sediment types (sand, silt, and clay) in streams and well-
mixed reservoirs.  In addition, HSPF simulates the transport of a single organic chemical and
transformation products  of that chemical. Flow and sediment transport related
assumptions/limitations included in HSPF are the following:

1.      Scour or deposition of inorganic sediment does not affect the hydraulic properties of the
       channel.
2.      Sand, silt, and clay deposit in different  areas of the bed; consequently, the deposition or
       scour of each material is not linked to the other fractions (i.e., "armoring" is not
       modeled).
3.      Longitudinal movement of bed sediments is not modeled.
4.      The rates of deposition and scour of cohesive  sediments (clay and silt) are calculated
       using the expressions given by Krone (1962) and Partheniades (1962), respectively.
5.      The settling velocity, critical  shear stress for deposition, critical shear stress for scour,
       and credibility coefficient for each fraction of cohesive sediment that is modeled have to
       be specified by the user.
6.      Bed structure (i.e., variation of bed density and bed shear strength) with depth below the
       water-bed interface is not modeled.
7.      Primary consolidation of cohesive  sediment beds is not represented.
8.      Flow is assumed  to be unidirectional in the modeled stream/river reaches.  Thus, tidal
       (oscillatory) flow cannot be simulated.
9.      User has to supply the evaporation rate time series as opposed to having this calculated
       internally.
10.    Outflow from each stream reach (and thus the average velocity), and the advection of
       suspended/dissolved constituents, is determined using the  kinematic wave routing
       method as opposed to solution of the governing equations (i.e., conservation of mass and
       conservation of linear momentum).
11.    There is a fixed relation between depth (at the deepest point in the reach), surface area,

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       and volume.  Thus, the shape of the stream's cross-section in a reach is not explicitly
       taken into account in routing the flow and determining the transport of sediment through
       that reach, and the shape of a reach does not influence the flow in the upstream reach.
12.    Water density is not a function of water temperature, salinity, or suspended sediment
       concentration.
13.    The bed shear velocity and shear stress is calculated using the assumption that the slope
       of the energy grade line is equal to the reach (i.e., bed) slope, and thus, that steady,
       uniform flow occurs in the reach.
14.    Longitudinal dispersion of transported constituents is not represented.

I.B    Project Objectives

       The goal of this project is to upgrade the flow and sediment transport routines in HSPF.
The existing sediment transport and flow routines in HSPF are simple routing modules, and as
such, are limited to steady, uni-direction flows. The specific objectives  of this research project
designed to accomplish the stated goal are listed below and then described in Section 1C.

1.      Develop a new stand-alone one-dimensional (1-D) hydrodynamic and sediment transport
       model.

2.      Describe the sampling procedures for collecting the sediment transport data necessary to
       perform sediment transport modeling in streams/rivers.

I.C    Technical Approach

       The proposed methodology to accomplish the objectives given in the previous section is
described in this section. The methodology is presented as the following two tasks.

1.      Develop a new stand-alone 1-D hydrodynamic and sediment transport model - The new
       stand-alone model will provide for more accurate simulations of the flow in a
       stream/riverine network as well as the transport and fate of both  in-stream sediments and
       sediments entering the water body being modeled from nonpoint and point sources. This
       task, which is being performed via a Work Assignment with Aqua Terra Consultants,
       Inc., will be accomplished by developing a new stand-alone 1-D unsteady hydrodynamic
       and sediment transport model.  The new model will be tested by  the EPA Work
       Assignment Manager (WAM), Dr. Earl  J. Hayter. The components involved in this task
       are listed below.

       Element 1 -   Develop and test a stand-alone 1-D model which  simulates the flow of
                    water and transport of sediments.

       The 1-D model will solve the governing 1-D (cross-sectionally averaged) equations for
       conservation of mass of water and sediment and linear momentum.  Thus, it will be
       capable of simulating both uni-directional and oscillating (i.e., tidal) flows. Nonpoint and
       point sources and sinks of water and sediment (including groundwater, precipitation and

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evaporation) will be included in the appropriate equations. The 1-D model will be
capable of representing a network of streams/channels. In general, a network will be
composed of any number of stream reaches, and multiple junctions of these reaches that
represent bifurcations and confluences. Boundary conditions for the equations of motion
will consist of stage and/or discharge hydrographs, while those for the conservation of
sediment mass equation will be total sediment load hydrographs or a user specified
sediment flux. Processes/features to be included in the 1-D model are:

a.      Precipitation and evaporation.
b.      Efflux and influx of groundwater to and from the stream reaches, respectively.
c.      Specification and representation in the flow and sediment transport routines of the
       average cross-sectional shape in each  1-D cell.
d.      The calculated change in bottom elevation (due to scour or deposition) for each
       cell is taken into account by the hydrodynamic model during the next time-step.
       Thus, scour and deposition in any cell will affect the hydraulic properties in that
       cell during  subsequent time-steps.
e.      Specification of a representative (or average) bed composition (e.g., grain size
       distribution, armoring) in each cell.
f.      Water density calculated as a function of water temperature, salinity, and
       suspended sediment concentration.
g.      Primary consolidation of cohesive  sediment (clay and silt) bed should be
       simulated in each cell using a finite-strain consolidation module. A user-specified
       flag would  indicate whether or not to invoke this module.
h.      In the sediment transport module, longitudinal dispersion of suspended sediment
       should be simulated.  The user should specify whether to use a constant value of
       the longitudinal dispersion coefficient or a semi-empirical model to calculate the
       value as a function of local flow properties.
i.      Use state-of-the-art equations for calculating the rates of erosion and deposition
       and the settling velocity of cohesive sediments.  Coagulation and flocculation of
       suspended cohesive  sediments should be explicitly represented in the sediment
       transport routine.

The stand-alone 1-D  model  will be thoroughly tested using existing field data from a
stream/river system selected by the Contractor and approved by WAM. The field data
will be provided by the Contractor to the WAM. A documentation report describing the
new model and the testing performed on the model will be produced.

Element 2 -   Develop a post-processing program for visualization of the simulated
             flows  and changes in the stream bed resulting from deposition  and/or
              scour of sediments.

Output from the new 1-D model needs to be readable by a post-processing program that
graphically displays the spatial and temporal changes in flows and stream bed
morphology.  The post-processing program must run on a PC running Windows 95, 98,
or NT operating systems. In addition, stage, discharge, and total sediment transport load

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       hydrographs must be generated and displayed at user selected locations in the stream
       network being modeled. The program must be able to produce color copies of all
       visualization products.

       Element 3 -   Report on the recommended approach for incorporation of the new 1-D
                    hydrodynamic and sediment transport model into HSPF.

       A report that describes the recommended approach for incorporation of the new 1-D
       model into HSPF will be produced. The report will document the primary issues and their
       resolution, and a detailed design/structure of the incorporation.

2.      Describe the sampling procedures for collecting the sediment transport data necessary to
       perform sediment transport modeling in streams/rivers - To perform sediment transport
       modeling in surface waters, a comprehensive set of hydrologic, hydraulic, and sediment
       data must be collected/measured in the water body (e.g.,  stream network, river, lake,
       reservoir, estuary) to be modeled. A generic field study work plan (including sampling
       procedures) is described as an example of the type of field study that should be
       performed to collect the necessary data to perform sediment transport modeling. This
       generic work plan is specific to an inland river/stream network. Thus, some modifications
       would have to be made to the plan if the surface water body to be modeled was a
       reservoir, lake, tidal river,  or estuary.

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II.     One-dimensional Hydrodynamic and Sediment Transport Modeling System

II.A.   EFDC1D

       Hamrick (2001) describes the theoretical and computational aspects of EFDC1D
(Environmental Fluid Dynamics Code - One-Dimensional), a box or control volume based one-
dimensional hydrodynamic and sediment-contaminant transport model. This document serves as
the User Manual for the EFDC1D model. The model is implemented in a stand-alone version
and also externally linked to HSPF (Hydrologic Simulation Package: Fortran). The following
material was extracted from Hamrick (2001).

       Features included in EFDC1D include the following:

       1.     Box or reach based spatial data structure, compatible with existing HSPF data
             structure, for representing one-dimensional channel networks.

       2.     Utilization of water surface elevation dependent descriptions of channel cross-
             section area, surface width, wetted perimeter and buoyancy centroid, including
             representation of overbank regions.

       3.     Bi-directional  unsteady flow and the ability to accommodate unsteady inflows
             and outflows associated with upstream inflows, lateral inflows and withdrawals,
             groundwater-surf ace water interaction, evaporation and direct rainfall. The model
             includes representation of hydraulic structures such as dams and culverts.
             Downstream boundary conditions include rating curves and time varying water
             surface elevation.

       4.     The model includes a generic one-dimensional transport solver for salinity,
             temperature and multiple sediment and contaminant classes. Longitudinal
             dispersive transport is represented. Sources and sinks will be represented
             consistent with continuity constraints.

       5.     Buoyancy effects due to salinity and temperature are dynamically coupled with
             the hydrodynamic component using an equation of state. Temperature transport
             includes a predictive surface heat exchange formulation representing the effects
             of solar radiation, long wave back radiation, and latent and sensible heat transfer.

       6.     For sediment transport, the model includes settling, deposition and resuspension
             of multiple size classes of cohesive and noncohesive sediments. The bed is
             represented by multiple layers of mixed sediment classes.  A bed consolidation
             model is implemented to predict time variations of bed depth, void ratio, bulk
             density and shear strength. The sediment bed representation is dynamically
             coupled to the cross-sectional area representation to account for area changes due
             to deposition and resuspension.

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       7.     The overall approach taken in developing the flow and sediment transport model
             was to minimize code development by the utilization of existing process
             subroutines from the multi-dimensional EFDC (Environmental Fluid Dynamic
             Code) model (Hamrick 1992; Hamrick 1996; Hamrick and Wu  1997).

       Process routines from the EFDC model are utilized to  satisfy the following requirements:

       1.     A fully dynamic one-dimensional solver for the momentum and continuity
             equations with channel cross-section area, surface width, wetted perimeter and
             buoyancy centroid as functions of the water surface elevation.

       1.     Time varying upstream inflows, and lateral inflows and withdrawals including
             corresponding sediment loads.

       2.     Hydraulic control structures and rating curve boundary conditions.

       3.     Time varying downstream boundary conditions for water surface elevation,
             salinity, temperature and sediment concentration.

       4.     A generic one-dimensional transport solver utilizing a monotone, positive definite
             scheme which minimizes numerical diffusion

       5.     A fully predictive surface heat exchange formulation which includes evaporation.

       6.     An equation of state relating density to salinity and temperature.

       7.     A multiple class sediment processes module that incorporates a wide variety of
             parameterization for settling, deposition and resuspension of cohesive and
             noncohesive  sediments.

       8.     A multiple layer bed module that includes a bed consolidation solver and
             parameterizations relating void ratio, bulk and  dry density, and  shear strength.

       Utilizing the above existing routines, code development focused on the main driver
program, input and output routines for the stand alone version of the model, interface routines
for the HSPF embedded version of the model, and a new hydrodynamic solver optimized for
one-dimensional channel network applications. The user manual (Hamrick 2001) describes the
theoretical and computational formulations of the governing hydrodynamic and transport
equations, and model input and output files. Before attempting to use EFDC ID, the user manual
should be read.

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II.B   GenScn

       The interactive computer program GENeration and analysis of model simulation
SCeNarios (GenScn) was developed by Aqua Terra Consultants, Inc. "to create simulation
scenarios, analyze results of the scenarios, and compare scenarios (Kittle etal.  1998). As a part
of this Work Assignment, GenScn was modified to read in one of the output files from EFDC1D,
namely the "dumpld.out" file. This is an ASCII file that contains time series of the following
parameters (in SI units) for each computational cell:

       LID - Cell index number from cellnet.inp
       L - EFDC1D single count computational index
       I - EFDC1D I double count computational index
       J - EFDC1D J double count computational index
       X - cell center east coordinate from cellnet.inp
       Y - cell center north coordinate from cellnet.inp
       BEL - cell bottom elevation
       DEP - cell depth relative to lowest point in cross-section
       AREA - cell cross-section area
       WPER - cell wetted perimeter
       BSRF - cell water surface width normal to flow direction
       VEL - velocity (negative indicates downstream direction)
       Q - discharge (negative indicates downstream direction)
       SAL - cell salinity
       TEM - cell temperature
       SED - concentration of cohesive sediment (1st class if multiple classes)
              multiple classes)
       SND1 - concentration of 1st class of noncohesive sediment
       SND2 - concentration of 2nd class of noncohesive sediment
       SEDB - bed mass per unit area of 1st class of cohesive sediment
       SNDB1 - bed mass per unit area of 1st class of noncohesive
              sediment
       SNDB2 - bed mass per unit area of 2nd class of noncohesive
              sediment
       TAUBED - bed shear stress

       A copy of the dumpld.out file from the Brandywine Creek simulation is included on the
distribution CD. Instructions to install and use the modified version of GenScn to view the time
series in the dumpld.out file are included in Appendix B. The two installation files for GenScn
are  also included  on the CD.

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      Figure 1 shows the Brandywine Creek watershed, located in the Christina River Basin of
Delaware and Pennsylvania. Figure 2 shows the GenScn generated schematic of the Brandywine
Creek network. The downstream end of the main stem, i.e., Brandywine Creek, is located in the
upper right-hand portion of this figure.  The main stem, segment 1, corresponds to the lower
portion of the creek extending upstream to a dam just below the confluence of the East and West
               Figure 1. Brandywine Creek and Tributaries (Hamrick 2001)
Branches.  Segment 2, corresponding to the East Branch, connects to segment 1 by a control
structure. The lower portion of the West branch, segment 3, joins the East Branch segment 2, by
a free flowing connection.  Segment 3 extends upstream along the West Branch to a dam just
below the confluence with Buck Run.  Segment 4 is along the West Branch to a dam just beyond
the confluence with Buck Run. Buck Run, segment 5, joins segment 4 by a free flowing
connection. Segments 6, 7 and 8 represent the remaining portion of West Branch and are
separated by dams.

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                                                            o
                                                            o
                                                            0
                                                            O

                                                            I
                                                            9
                                                            o
                                                            o
                                                            <>
                                                            0
                                                            0
                                                            t
Figure 2.  GenScn Generated Schematic of the modeled Brandywine Creek Network
                                   10

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       Figures 3 and 4 below show the time series generated by GenScn for Q and TAUBED at

cell number 25 in the Brandywine Creek network. Similar time series plots can be generated for

the other parameters listed above.
             -2.

            -3.8

            -5.6

            -7.4

            -9.2

         C?  -11.

           -12.8

           -14.6

           -16.4

           -18.2

            -20.
                    15
                   MAY
31
  15
JUNE
30
  15
 JULY
1990
31
 15
AUG
31     15
   SEPT
                                      dumpldQ at 25
       Figure 3. Discharge (Q) time series at Cell 25 in the Brandywine Creek Network
              4.

             3.6

             3.2

             2.8


           a2-4
           g  2.

           3 1.6

             1.2

             0.8

             0.4

              0.
                     15
                   MAY
 31
  15
 JUNE
 30
   15
 JULY
 1990
 31
  15
 AUG
 31     15
    SEPT
                                    dump Id TAUBED at 25
Figure 4.  Bed Shear Stress (TAUBED) time series at Cell 25 in the Brandywine Creek Network
                                          11

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II.C   Report on Linkage of EFDC1D to HSPF

       The purpose of this task was to report on the recommended approach for incorporation
of the new 1-D hydrodynamic and sediment transport model into HSPF (Bicknell et al. 1997).
The ultimate goal of this effort (that is beyond the scope of this study) is to provide a more valid
flow/sediment transport modeling tool for development of TMDLs in watersheds that
experience significant nonpoint source impacts. While integration of the 1-D model that was
developed in this study with HSPF is feasible, it is a task that requires: 1) additional study to
determine the advisability and method of integration, 2) additional  1-D model code testing and
refinement, and 3) more resources than were available in this effort. The first requirement, i.e.,
determination of the advisability and method of incorporation is briefly addressed below. The
remaining portions of this section describe the currently available methodology for linkage of
the two models using a bridge or linkage program to reformat the output of HSPF for
subsequent input to the stand-alone 1-D flow and sediment transport model.

II.C.1       Issues Related to Code Integration of HSPF and EFDC1D

       Analysis of the two models indicated three major problems with complete integration
within a single program. These problems relate  to the fundamental  simulation schemes and
architectures (including source code standards)  and their I/O management methods.

       The architecture of HSPF is an important factor in the issue of code integration. The
program imposes a strict up stream-to-downstream direction on movement of mass. Also, it
simulates each component of the watershed (moving downstream) for a portion of the run time
span,  and saves the interim results in memory until the next portion of the run span.  This makes
it problematic to interact directly with a module that permits material to move upstream, and
which effectively solves the entire physical system simultaneously. "Full" integration would
require HSPF to complete its run;  save the results for all watershed components over its
simulation time span; invoke the EFDC1D module and provide the results to EFDC1D during its
subsequent simulation. It is not feasible to integrate the two models more completely than this -
given the fundamental architectures and simulation schemes of the two programs - without a
complete reworking of HSPF.

       A second issue relates to the time series  management schemes of the two programs,
which are fundamentally different. HSPF includes relatively complex, comprehensive, and well-
isolated modules for handling input, internal transfer, and output of time series data. EFDC1D
utilizes simple time series management, and the time series I/O functions are widely distributed
throughout the code. Modifying an HSPF-integrated EFDC1D to utilize the HSPF time series
modules would require major reworking of EFDC1D, with changes throughout the code.

       A similar difficulty occurs with inputs other than time series. EFDC1D has a large
number of input options/parameters, but its input processing routines utilize relatively simple
software techniques. While general incorporation of new inputs into the HSPF data structures is
straightforward, the complexity of EFDClD's options, and the large amount of required stream
characterization data and the spatial interface with the HSPF watershed would necessitate
                                          12

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development of a logically complex input routine and several new sophisticated input formats
and data structures. The alternative, i.e., direct incorporation/adaptation of EFDClD's input
structures/formats into HSPF would not be possible within the HSPF code guidelines. While this
strict adherence to the original HSPF structure, methodology, and standards slightly limits its
flexibility, it has been very useful in the long-term maintenance, viability, and usability of the
system. Similarly, our experience indicates that major changes to a complex code such as
EFDC1D would make it less amenable to maintenance/error correction and future enhancement
by its original developer. In summary, full integration is a difficult task under the constraints of
the existing structures and methods of the two models.

II.C.2        Linkage of HSPF and EFDC1D using MKINP1D

      The program MKINP1D was written to transform HSPF time series output files and write
the corresponding input files for EFDC1D. It is based on Tetra Tech's existing linkage program
MKINP, which links HSPF with the full 3-D version of EFDC, and much of the feel and format
of that program has been preserved. This document assumes that the user is familiar with the
usage, input formats, and terminology of both models.

      Although EFDC ID is intended primarily to handle  flow and sediment, the linkage
program is also capable of passing heat and a generic toxic chemical (normally simulated in
HSPF with the GQUAL module in the stream and the PQUAL/IQUAL or PEST modules on the
land surface).  These two constituents are modeled by the portions of the original EFDC code that
remain active  in EFDC ID. Salinity and shellfish larvae can also be modeled by EFDC and
EFDC ID, but since they are not generally represented in HSPF, they were omitted from
consideration  by MKINP ID.

      The approach used in MKINP ID is the following. MKINP ID reads flow volumes and
constituent loadings that have been generated by HSPF, transforms them to the flow rates and
constituent concentrations needed by EFDC ID, and produces EFDC ID input files containing
time series of loadings to the specified cells. The HSPF time series output is in "PLTGEN"
format, which is a simple column-dependent text file with one time step per line at a constant
interval, and one or more columns containing results from the run. Figure 5 shows this
methodology in the form of a flowchart.

      Each PLTGEN file can be applied to one or more EFDC ID cells. If applied to multiple
cells, the loads from the file are divided equally among all  target cells. Normally, RCHRES
stream) output is applied to a single EFDC ID cell at an upstream boundary, while diffuse inputs
from PERLND and IMPLND are divided equally among a set of cells along a stream.

      A PLTGEN file may contain only the loadings from a single HSPF reach or land
segment, or it may contain aggregate loading from several  land segments or reaches that
                                          13

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               HSPF
               UCI file
      HSPF
                                    PLTGEN
                                      Files
              MKINP1D
              Input file
                        HSPF Output:
                        Flow, sediment,
                        and other material
                        loads from land
                        areas and streams
 MKINP1D
                               QSER.INP
                              SDSER.INP
                                  etc.
              EFDC1D
              Input file
                       EFDC1D Input:
                       Flow, sediment,
                       and other material
                       loads formatted for
                       inputtoEFDCID
                       cells
EFDC1D
                               EFDC1D
                                Output
                  Figure 5. Flow Diagram of HSPF - EFDC1D Linkage

contribute to the same cell or group of cells. For instance, if two small tributaries are represented
as reaches in HSPF, and they both flow into the same EFDC1D cell, then you may generate a
single PLTGEN file that contains the total loadings from the two streams.

      Likewise, you may have a set of several PERLND and IMPLND segments that represent
the different land use types in an area that provides diffuse inputs to a group of EFDC1D cells
that make up a portion of a river. In this case, you can sum up the loadings from all of these land
uses, with each segment's loadings weighted by its respective area, and produce a single
PLTGEN file that accounts for them all.
                                       14

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      MKINP1D allows the loadings in any given file to be divided among up to 20 EFDC1D
cells, and a total of 300 cells can be targeted from all PLTGEN files. The total number of
PLTGEN files that can be processed is 100.

HSPF Setup

      The HSPF run should be set up to provide output of the desired constituents:
                      Table 1. HSPF Outputs Needed for EFDC1D
  Quantity    Units
PERLND*
IMPLND*
RCHRES
Flow
Sediment
Heat
Toxic
acre-feet or Mm3
tons or tonnes
BTU or kcal
Ib or kg
PERO
SOSED
POHT
POQUAL/POPEST
SURO
SOSLD
SOHT
SOQUAL
ROVOL
ROSED(l-3)
ROHEAT
TROQAL
      The PERLND and IMPLND variables are multiplied by the area and converted to the
appropriate units using standard HSPF time series linkages. This step is normally done using the
SCHEMATIC and MASS-LINK blocks (see below).

      PERLND and IMPLND do not distinguish sediment particle sizes; therefore, the
sediment loadings from these operations (SOSED and SOSLD, respectively) are divided into
sand, silt, and clay using constant fractions, which are specified in the MKINP1D input file.
RCHRES accounts for the transport of these three sizes automatically, so HSPF can provide
separate loadings for these.

      However, EFDC1D divides sediment sizes somewhat differently from the RCHRES
module of HSPF. The HSPF sand, silt, and clay fractions must be mapped to EFDClD's
"noncohesive", "cohesive-1" and "cohesive-2". This is done by an additional set of factors in the
MKINPID input file.
                                        15

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Example HSPF Input Setup
                           Figure 6. Example Basin Diagram
PERLND 1
PERLND2
IMPLND 1
5 acres
10 acres
2 acres
7 acres
12 acres
5 acres
3 acres
25 acres
0 acres
10 acres
15 acres
8 acres
   RCHRES 1
                     cell 1
                 cell 2
    cells
     celU
      In this example, a single stream is being modeled. The upstream portion is being
represented by HSPF RCHRES # 1, while the downstream end is modeled using four EFDC1D
cells. The drainage basin is conceptually divided among three land use types (two pervious and
one impervious), with varying amounts of each tributary to each cell. The upstream RCHRES
would have additional land areas that drain to it, but those loadings are accounted for in the
output from that reach, so it is not included separately.

      The relevant portion of the SCHEMATIC block in the HSPF input file might contain the
following:

                      Figure 7. Sample SCHEMATIC Block Input
      SCHEMATIC
      <-Source->
         #
      RCHRES   1
       PERLND
       PERLND
       IMPLND

       PERLND
       PERLND
       IMPLND
1
2
1

1
2
1
                  <--Area-->
                  <-factor->
 5.
10.
 2.

 7 .
12.
 5.
           <-Target->     ***
              #      #   ***
           PLTGEN   1      3
PLTGEN
PLTGEN
PLTGEN

PLTGEN
PLTGEN
PLTGEN
          etc .
      END SCHEMATIC
                                         16

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If flow, sediment, and heat are being modeled, then the HSPF MASS-LINK block would contain:
                      Figure 8. Sample MASS-LINK Block Input
MASS -LINK
MASS-LINK
 <-Grp>
 
PERLND PWATER
PERLND SEDMNT
PERLND PWTGAS
END MASS-LINK
MASS-LINK
 <-Grp>
 
IMPLND IWATER
IMPLND SOLIDS
IMPLND IWTGAS
END MASS -LINK
MASS-LINK
 <-Grp>
 
RCHRES ROFLOW
RCHRES ROFLOW
RCHRES ROFLOW
RCHRES ROFLOW
PERLND ROFLOW
END MASS -LINK
END MASS-LINK

1
<-Member-><
 # #<
PERO
SOSED
POHT
1
2
<-Member-><
 # #<
SURO
SOSED
SOHT
2
3
<-Member-><
 # #<
ROVOL
ROSED 1
ROSED 2
ROSED 3
ROHEAT
3



--Mult-->
-factor->
0.0833333




--Mult-->
-f actor->
0.0833333




--Mult-->
-f actor->







                                            
                                            
                                            PLTGEN
                                            PLTGEN
                                            PLTGEN
                                            
                                            
                                            PLTGEN
                                            PLTGEN
                                            PLTGEN
                                            
                                            
                                            PLTGEN
                                            PLTGEN
                                            PLTGEN
                                            PLTGEN
                                            PLTGEN
<-Grp> <-Member-> ***
  # # ***
 INPUT  MEAN   1
 INPUT  MEAN   2
 INPUT  MEAN   3
<-Grp> <-Member-> ***
  # # ***
 INPUT  MEAN   1
 INPUT  MEAN   2
 INPUT  MEAN   3
<-Grp> <-Member-> ***
  # # ***
 INPUT
 INPUT
 INPUT
 INPUT
 INPUT
MEAN
MEAN
MEAN
MEAN
MEAN
      When the HSPF run is made, the PLTGEN operations will correctly write out the time series
for use by MKINP1D. The beginning of the first PLTGEN file might contain the following:
                                       17

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                        Figure 9. Sample PLTGEN File Output
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
SIMU
HSPF FILE  FOR DRIVING SEPARATE PLOT PROGRAM
Time interval:  1440 mins           Last month  in printout year:  12
No. of curves plotted:  Point-valued:  0   Mean-valued:  5    Total
Label flag:   0
Plot title:
Y-axis  label:
Scale info:   Ymin:
              Ymax:
              Time:
Data for  each curve
Label
TRIE REACH  FLOW
TRIE REACH  SAND
TRIE REACH  SILT
TRIE REACH  CLAY
TRIE REACH  HEAT
Pivl:    24
                         Idelt:
60
                   Threshold:-0.10000E+31
 0.0000
 150.00
 20.000     intervals/inch
(Point-valued first,  then mean-valued):
    LINTYP      INTEQ     COLCOD       TRAN   TRANCOD
         071       AVER          2
         071       AVER          2
         071       AVER          2
         071       AVER          2
         071       AVER          2
Time series  (pt-valued, then mean-valued):

Date/time                        Values

 1995 12 31  24  0 -1. OOOOOOOE+30-1.OOOOOOOE+30 -1.OOOOOOOE+30 -1.OOOOOOOE+30
 1996   1   1  24  0 1.4474289E-02  0.260718      9 .5694907E-02  0.1248719
      The file continues with one line for each time step at the desired interval, which may be the
same as the time step of the HSPF simulation or a multiple of the time step. The first 25 lines are
a default header generated by HSPF; it is not used by MKINP1D. The first line of numbers (line 26)
contains dummy values for the time step prior to the start of the run; it is also ignored.

MKINPID Input File

      EFDC1D requires the input of a separate text file for each constituent modeled; these files
have specific names, and the data are stored in different units and formats than HSPF can generate
on its own. In order for MKINP ID to create these files, a separate input file (MKINP 1D.INP) is
needed. The following figure shows this input file for running the bridge program for the sample
basin that was discussed in the previous section. It is a simple text file with six sections of input
values. Each  section consists of a header of comment lines followed by one or more lines of input
to be read  by the program. The comment lines begin with a "C" in the first column, and the last
comment line of each header is also marked by the section number (e.g., the last comment before
section 2 begins with "C2"). In the following, each of the sections is followed by a brief description
of its contents.

                        Figure 10. Sample MKINP 1D.INP File
                                         18

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C River name  =  Text title of run
C Note        =  Additional information
C
Cl Title  (20  Ch)                Note
  'Test HSPF  to EFDC1D'         'Flow,  sediment, and heat'


The titles in Section 1 are for the user's documentation purposes only. They appear at the top of the
output files being passed to EFDC1D, such as QSER.INP.
v^ 	
C nhead
C sdate
C edate
C nfile
C units
C tdelt
C
C2 nhead
26
= head lines of HSPF input file to be skipped (usually 26)
= Start date to extract time series data
= End date to extract time series data
= total input HSPF files: max 100
= unit system of HSPF time series data (l=English, 2= Metric)
= number of minutes per time step of HSPF data (60=hourly, etc.)

sdate edate nfile units tdelt
1996 01 01 00 00 1996 12 31 24 00 5 1 1440
      Section 2 contains global information about the linkage. This is an one-year run that reads
HSPF output from five PLTGEN files at a daily time step and in English units. The first 26 lines (the
default header plus the line of dummy values) are skipped in each PLTGEN file.
c	
C ID     =  index number of PLTGEN-format file
C FNAME  =  HSPF PLTGEN-format filename
C optype =  1=  total sed only   2=sand/silt/clay
C flo    =  column in PLTGEN that  is  flow (ac-ft or Mm3)
C sedl-3 =  columns in PLTGEN that  are  sediment: (ton or tonne)
C                 op=l: sedl=total    sed2=not used sed3=not  used
C                 op=2: sedl=sand     sed2=silt     sed3=clay
C heat   =  column in PLTGEN that  is  heat input (BTU or kcal)
C tox    =  column in PLTGEN that  is  tox substance input  (Ib or  kg)
C
C3 ID FNAME           op flo sedl  sed2  sed3 heat  tox
    1 "trib_flo.plt"   2123450
    2 "cell_l_d.plt"   1120030
    3 "cell_2_d.plt"   1120030
    4 "cell_3_d.plt"   1120030
    5 "cell_4_d.plt"   1120030
      Section 3 is a list of the PLTGEN filenames, along with a set of flags for each file. The first
flag, OPTYPE, tells MKINP1D whether to expect the PLTGEN file to contain only a single time
series for sediment (such as generated by PERLND and EVIPLND) or to have separate sand, silt, and
clay time series. There must be NFILE (Section 2) lines present in this section.

      The remaining flags indicate which column, if any, contains each of the possible constituents.
PLTGEN column numbers may range from 1 to 20. In this example, all of the files have the flow as
the first time series column. The tributary inflow to cell 1 has separate entries for sand, silt, and clay
(columns 2-4), and the heat load is in column 5; the diffuse inputs from PERLND and IMPLND
                                        19

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areas to cells 1-4 have a single sediment time series in column 2, with heat in column 3. As we saw
in the sample MASS-LINK block above, toxics are not being modeled.
                   Figure 10.  Sample MKINP1D.INP File (completed)
v_
c
c
c
c
c
C4






ID



=
ntar

index
number


number
of
maximum
11

, .

ID





1
2
3
4
5
. . =

ntar
1
1
1
1
1
EFDC1D


of
target
20
cell

il 12
1
1
2
3
4






13







file
EFDC1D cells using same

number for each target cell

14






15 16 17 18 19 110







HSPF file (divided equally)

(see cellnet . inp)







      The lines in section 4 connect the PLTGEN file output to the appropriate cells. The "i"
values are the index numbers assigned to the EFDC1D cells in the CELLNET.INP file. There must
be NFILE lines present.
c	
C Sediment/Solid Distribution
C
C5 ID   Sand    Silt     Clay
C
    1   0.3      0.3      0.4
    2   0.3      0.3      0.4
    30.3      0.3      0.4
    40.3      0.3      0.4
    5   0.3      0.3      0.4
                                        20

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       These fractions divide the total sediment outflow time series (when present) into sand, silt,
and clay particle sizes. The program will attempt to read NFILE lines, one for each PLTGEN file,
even though files that already contain separate  sand, silt, and clay time series (OPTYPE=2 in
Section 3) do not use them.
C  Mapping HSPF to  EFDC1D sediment fractions
C
C
C
C   HSPF                           EFDC1D
C
C6	 Noncohesive   Cohesive-I    Cohesive-II
   "Sand"          1.0            0.0             0.0
   "Silt"          0.5            0.0             0.5
   "Clay"          0.0            1.0             0.0
Section 6 contains the factors that map from HSPF sediment fractions to EFDC1D sediment types.

MKINP1D Output Files

      MKINP1D reads its input file, then reads the HSPF PLTGEN files as instructed in order to
produce time series files with the required formats and filenames for EFDC1D. The  units are
automatically converted from HSPF output units to the proper units for the receiving model.

      Each file contains a full time series for each target EFDC1D cell, one after another. The
pointers for these target cells must be placed in the CELLNET.INP file so that EFDC1D can
associate each time series with the correct cell.

      The flow is always output. For each of the water quality constituents, a file is produced
whenever at least one of the files has a nonzero column flag for that  constituent in section 3 of
MKINP1D.INP. Any time series for a target cell that receives no  load of a given constituent is
simply filled with zeroes.
                                         21

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                             Table 2.  EFDC1D Input files
      Constituent                Filename           Units
Flow
Cohesive sediment
(2 fractions)
Noncohesive sediment
Temperature
Toxic substance
QSER.INP
SDSER.INP

SNSER.INP
TSER.INP
TXSER.INP
cms
mg/1

mg/1
C
mg/1
Conclusion

      MKINP1D should aid the modeler in linking flow and water quality loads generated by
HSPF to EFDC1D, whether they are generated from the land surface or from upstream tributaries
above the bounds of the EFDC1D cell network.
                                        22

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III.    Sampling Procedures for Sediments

       To perform sediment transport modeling in surface waters, a comprehensive set of
hydrologic, hydraulic, and sediment data must be collected/measured in the water body (e.g.,
stream network, river, lake, reservoir, estuary) to be modeled. In this section, a field study work
plan for the South Fork Broad River (SFBR) watershed in Georgia is given as an example of the
type of field study that should be performed to collect the necessary data to perform sediment
transport modeling. This work plan is specific to an inland river/stream network. Thus, some
modifications would have to be made to the plan if the surface water body to be modeled was a
reservoir, lake, tidal river, or estuary.
III.A  Field Work Plan

       The field data collection plan that was developed by the Office of Research and
Development's National Exposure Research Laboratory - Ecosystems Research Division (ERD)
for the SFBR watershed (see Figure 11) consists of spatially intensive rain-event sampling in one
of the sub-watersheds (Biger Creek basin) of the SFBR, to be performed by EPA Region IV, and
less spatially intensive rain-event sampling to be performed by ERD over the balance of the
basin. Specifics of the field work plan are described in the 14 tasks given below. A subsequent
report will describe this particular field study in detail, and will include sampling protocols and a
description of the database developed for this study.

1.      A Class A meteorological (Met) station was installed by ERD in the city of Comer,
       Georgia (see Figure 11). The nearest existing Met station is in Athens, which is not in the
       SFBR watershed. The Met station measures the following meteorological data required
       by HSPF (to be used for simulating the nonpoint sediment loads in the SFBR watershed):
       precipitation rate, solar radiation, relative humidity, temperature, wind speed/direction,
       barometric pressure, and evaporation rate.

2.      Tipping bucket rain gages were installed at seven other locations throughout the SFBR
       watershed to provide basin-wide spatial coverage of rain fall quantities.

3.      Stage-discharge rating curves are being developed by the State of Georgia Water
       Resources Division of the U.S. Geological Survey (USGS) using USGS Standard
       Operation Procedures (SOPs) (Stamey 1999) at the following rain-event sampling
       stations (see Figure 11):
                                           23

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                                             South Fork of the Broad River
         ATHENS
Figure 11. South Fork Broad River Watershed showing the locations of the sampling stations.

            SFBR70 - Sandy Cross Road bridge over the SFBR near the town of Carlton, GA.
            A Bank-Operated Cableway system, to be used to collect depth-integrated and
            bedload samples at several lateral stations across the SFBR, is to be installed at
            this station in Fall 2001. This station is the outlet of the portion of the SFBR basin
            that is being monitored by ERD and Region 4.

            SFBR60- Big Clouds Creek, approximately 250 m upstream of the confluence of
            the SFBR and Big Clouds Creek. A Bank-Operated Cableway system was
            installed at this station in 2000. This system is used to collect depth-integrated
            and bedload samples at five lateral  stations across Big Clouds Creek.
                                         24

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             SFBR50 - Highway 22 bridge over the SFBR, immediately downstream of the
             confluence of Beaverdam Creek and the SFBR. NOTE - THIS SAMPLING
             STATION WAS DROPPED DUE  TO FY 2000 BUDGET CUTS.

             SFBR40 - Highway 172 bridge over the SFBR, immediately downstream
             of the confluence of the SFBR and Brush Creek. A Bank-Operated
             Cableway system was installed at this station in 2000. This system is used
             to collect depth-integrated and bedload samples at five lateral stations
             across the SFBR.

             SFBR30 - At the wood bridge over Brush Creek on McCarty-Dodd Road. A crane
             truck is used to collect depth-integrated and bedload samples at thee lateral
             stations  across Brush Creek.

             SFBR20 - Approximately  100 m downstream of the three box culverts
             under Highway 29, located immediately downstream of the confluence of
             the north and south branches of Double Branch Creek. Depth-integrated
             and bedload  samples are collected by a person wading the creek and using
             hand-held samplers.

             SFBR10 - Old steel bridge over the SFBR, located approximately 40 m
             downstream  of the bridge on Old Ila Road. A crane truck is used to collect
             depth-integrated and bedload samples at five lateral stations across the
             SFBR. This is the upstream most monitoring station.

             Stations Bl,  B1A, B2, B3  and B4 on Biger Creek, which is a tributary of
             Brush Creek. Region 4 has been monitoring these stations, and has
             developed stage-discharge rating curves for each station.

             At the outlet of the Region 4 designated reference watershed (Lightwood
             Log Creek).  This station is being monitored by Region 4.

       The rating curves are being determined by installing staff gages at these stations and then
       measuring the discharges corresponding to at least ten different stages (Stamey  1999).

4.      The USGS  set up a real-time stream gaging  station at the Sandy Cross Road bridge
       (SFBR70).  This will provide a continuous stage/discharge hydrograph at the outlet of the
       basin.

5.      Rain-event sampling is being performed at the identified sampling stations. Rain-event
       sampling consists of measuring bedload, suspended load, and nutrient concentrations
       once  every  one  to two hours during both the rising and falling stages of the runoff
       hydrograph. Established USGS SOPs for suspended load and bedload measurements
       (Edwards and Glysson 1998) are being used at these sampling stations. The suspended
       load will be determined by filtering water samples to be collected using a depth-
                                          25

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integrated sampler (DH-48 and DH-59) and a single-point automatic sampler (ISCO model 6700
portable sampler). A six-inch Helley Smith bedload sampler is being  used to measure the
bedload at three locations across the SFBR or tributary (at approximately 25%, 50% and 75% of
the width from the right bank, facing downstream) at stations SFBR20 and SFBR30, while at
sampling stations SFBR10, SFBR40, SFBR60 and SFBR70, the bedload is being measured at
five locations across the SFBR or tributary. A 25-lb hand-held bedload sampler is being used at
SFBR20, while a 167-lb cable-suspended bedload sampler is being used at the other stations. A
depth-integrated  sampler is being used to collect a sample at the same three or five locations  at
each sampling station. A DH-48 hand-held sampler is being used at SFBR20, whereas a DH-59
rope/cable suspended sampler is being used. General information about performing rain-event
sediment sampling is given in Section III.B.

6.      A YSI multi-probe 6920 was installed at each  sampling station to measure stage,
       conductivity, temperature, dissolved oxygen, pH, turbidity,  and oxidation-reduction
       potential  (ORP) once every 15 minutes.

7.      A second ISCO sampler was installed at each sampling station. The samples collected by
       this sampler will be analyzed using standard U.S. EPA methods (US EPA 1997) to
       determine concentrations of ammonia, nitrate, orthophosphate, and total phosphorus.

8.      In addition to these samples/measurements, at least two depth-integrated water samples
       of sufficient quantity to perform grain size analysis (i.e., sieve and hydrometer analysis)
       should be collected, one on the rising stage and the other on the falling stage, at each
       station. Bedload size distribution needs to be measured as well during the rising limb  of
       the runoff hydrograph. Rosgen (1996) describes a method to estimate the size distribution
       of bedload that is transported during a bankfull event.

9.      Cross-sectional surveys of the  SFBR and the identified tributaries will be performed at
       approximately 0.10 mile intervals using the stratified random approach, starting at the
       downstream-most sampling station at the Sandy Cross Road bridge (SFBR70). The major
       tributaries are the following creeks: Brush, Big Clouds, and the Double Branch (up to the
       confluence of the South and North Forks). The surveys in these tributaries will start at the
       confluence with the SFBR and proceed upstream to the sampling stations. The surveys
       should be performed using a total station, a survey grade GPS unit and other required
       surveying equipment, and extend out onto both floodplains to a distance at which the
       elevation is +5 ft that of the banks.

10.    The following channel characteristics will be observed/measured at each surveyed cross-
       section: stream width, depth and maximum depth from previous runoff events, channel
       planform (i.e., straight, bend),  profile (i.e., riffle, pool, run), flow type (i.e., rapid, slow),
       features (i.e., point bars, shoals, chutes,  snags, debris), and bed form features (i.e.,
       ripples, sand bars, armoring).
                                           26

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11.     Stream bank erosion potential will be evaluated at the surveyed cross-sections using bank
       pins, as described by Rosgen (1996). In addition, bank height and slope will be measured,
       and the bank status (i.e., protected with vegetation, eroding, stable), bank material (i.e.,
       clay, silt, sand, exposed roots), and vegetation type and percent cover will be  noted.

12.     Channel stability will be monitored at selected surveyed cross-sections. Specifically, this
       includes evaluating vertical or bed stability, lateral stability, and changes in bed material
       size distribution. The methods described by Rosgen (1996) should be used to  perform
       this monitoring.

13.     Particle size distributions of channel bed materials at five lateral positions at each
       surveyed cross-section are  being determined using sieve and hydrometer analysis.
       Sediment cores will be collected at each cross-section at the following five locations: 1)
       thalweg, 2) one-half the distance from the thalweg to the right bank (looking
       downstream), 3) one-half the distance from the thalweg to the left bank, 4) right bank,
       and 5) left bank. The locations of the second and third cores will vary somewhat
       depending on the river morphology.

14.     River reach assessment should be performed at selected surveyed cross-sections. In
       general, river reach assessment should include channel planform (e.g., bar morphology),
       riparian vegetation, channel evolution model status (Schumm et al. 1986), bank
       properties, and bank and backslope erosion processes. Overall geomorphic condition and
       aquatic habitat should be assessed with a stream reach inventory model (Pfankuch 1975)
       and the habitat assessment  form (Plafkin et al. 1989)  or an appropriate habitat assessment
       model.
III.B  Rain-event Sediment Sampling Procedures

       The procedures described in this section relate to the fifth task (i.e., rain-event sampling)
given in the previous section. Detailed information related to the measurement methods for
sediment sampling using the depth-integrated samplers and the bedload samplers are given
elsewhere (Edwards and Glysson 1998; Pruitt et al.  1999). Generic procedures for performing
rain-event sediment sampling using the referenced sediment samplers and measurement methods
are described in this section.

       The following data need to be collected at each sampling station:

       •       Continuous stage (i.e., water surface  elevation) and temperature record over the
              duration of the runoff event. These data can be collected using, e.g., a YSI multi-
              probe 6920.

       •       Rainfall rate and amount using, e.g.,  a tipping bucket rain gage.
                                           27

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       •      Depth-integrated samples and bedload samples need to be collected at the relative
              lateral positions described in the previous section over the duration of the runoff
              hydrograph. These samples should be collected once every one-to-two hours,
              ideally starting before the water starts rising in the river due to runoff. These
              measurements will enable determination of the total sediment load hydrograph.

       In order to calculate the discharge hydrograph during the runoff event using the measured
stage hydrograph, a stage-discharge rating curve needs to be determined at each sampling station
using the method described by Carter and Davidian (1968). In addition, a cross-sectional survey
(as described in task 9 in the previous section) of the stream/river at each sampling station needs
to be performed.
                                           28

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                                    Appendix A

                             Contents on Distributed CD
Folders                         Contents

Brandywine Creek         Input files for EFDC1D simulation of the Brandywine Creek
                         stream network

HSPF Linkage             Files, including executable and input files, to run the Mkinpld
                         program

LA River                 Input files for EFDC1D simulation of the Los Angeles River
Files                            Contents

EFDC.CMN              ASCII file containing common blocks for the EFDC1D model.

EFDC.PAR               ASCII file containing parameter statements for the EFDC ID
                         model.

EFDC1D.F               ASCII file containing the EFDC ID FORTRAN program.

EFDCmapInstall           Binary file that installs the EFDCmap utility.

GenScn_WDMUtil_WinHSPF_2.0.5      Binary file that installs the modified version of
                                      Gen Sen.
                                        29

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                                    Appendix B

     Instructions for Installing and Using EFDC1D Visualization Software (GenScn)
1.     Install the GenScn 2.0.5 package:
      a.     Copy the GenScn_WDMUtil_WinHSPF_2.0.5.exe file from the distribution CD
             to a hard drive on your computer.
      b.     Double click on this file inside Windows Explore.

2.     Install the EFDCMap utility:
      a.     Copy the EFDCmapInstall.exe file from the distribution CD to a hard drive on
             your computer.
      b.     Double click on this file inside Windows Explore.

3.     Run EFDCMap utility
      Open dump Id. out file
      Write shape file (use name: brandy)
      When asked if you want to add to map file or create a new one, select "Yes"
      (use name: brandy.map)
      Exit

4.     Run GenScn
      maximize window
      File > New Project
             For the map file, click "Select", and choose brandy.map
             Change "File Type" to EFDC in drop-down menu
             Click Add from File
             Browse/Select and then Open dump Id. out file
             Click OK at bottom
      File > Save Project As
             Enter a project name (e.g., brandy)
      Exit (unless going on to step 5)

5.     Run GenScn (if not already open)
      Maximize window
      Open Project Browse/Select brandy(.sta)
      Map > Change to List  (if map is not in list form)
      Select Constituent/Location/Scenario
             (scenario = dump Id file name)
             (constituent = parameter name(s) from dump Id file)
             (location = node number(s))
             You can choose more than one of each category if desired
             The "OBSERVED" scenario is normally empty for this type of project
                   unless added separately
                                         30

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       Click + key in Time Series window
       Select/click on time series of interest in Time Series window
       Click on Generate Graphs in Analysis window (or Analysis > Graph)
             The Generate Graphs button looks like 5 vertical red bars on a bar chart
       Etc. (refer to GenScn documentation for details of using GenScn features for
       analysis of data)


Note: you can ignore steps 2 and 3 and the parts of 4 related to the Map if you want to just open
the dump Id. out file and plot various parameters without access to the "visual" map of the stream.

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REFERENCES

Bicknell, B.R., J.C. Imhoff, J.L Kittle Jr., A.S. Donigian Jr., and R.C. Johanson. 1997.
Hydrological Simulation Program - FORTRAN, User's Manual for Release 11: EPA/600/R-
97/080. U.S. Environmental Protection Agency, National Exposure Research Laboratory,
Athens, GA.

Carter, R.W., and J. Davidian. 1968.  "General procedure for gaging streams," U.S. Geological
Survey, Techniques of Water-Resources Investigations of the U.S. Geological Survey. Book 3.
Applications of Hydraulics. Chapter A6 (TWRI 3-A6X 13 pp.

Edwards, T.K., and G.D. Glysson. 1998. "Field Methods for Measurement of Fluvial Sediment,"
U.S. Geological Survey, Techniques  of Water-Resources Investigations of the U.S. Geological
Survey. Book 3. Applications of Hydraulics. Chapter C2 (TWRI 3-C2X 89 pp.

Hamrick, J. M., 1992. "A three-dimensional environmental fluid dynamics computer code:
Theoretical and computational aspects," The College of William and Mary, Virginia Institute of
Marine Science, Special Report 317.  63 pp.

Hamrick, J. M. 1996. "Users manual  for the environmental fluid dynamic computer code," The
College of William and Mary, Virginia Institute of Marine Science, Special Report 328. 224 pp.

Hamrick, J. M. 2001. "EFDC1D - A One Dimensional Hydrodynamic and Sediment Transport
Model for River and Stream Networks, Model Theory and Users Guide,"  Technical Report. U.S.
EPA National Exposure Research Laboratory, Athens, GA and U.S. EPA Office of Science and
Technology, Washington, DC.

Hamrick, J. M., and T. S. Wu, 1997.  "Computational design and optimization of the
EFDC/HEM3D surface water hydrodynamic and eutrophication models," Next Generation
Environmental Models and Computational Methods. G. Delich and M. F. Wheeler, Eds.,
Society of Industrial and Applied Mathematics, Philadelphia, 143-156.

Harrelson, C.C., C.L. Rawlins and J.P.  Potyondy. 1994. "Stream channel reference sites: An
illustrated guide to field technique," United States Department of Agriculture, Forest Service,
Rocky Mountain Forest  and Range Experiment Station, Fort Collins, CO.  General Technical
Report RM-245.

Kittle, J.L., Jr., A.M. Lumb, Hummel, P.R., Duda, P.B., and Gray, M.H.  1998. "A Tool for the
Generation and Analysis of Model Simulation Scenarios for Watersheds (GenScn)," U.S.
Geological  Survey Water-Resources  Investigations Report 98-4134.

Leopold, L.B. 1994. A View of the River. Harvard University Press.
                                         32

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Pruitt, B.A., L.C. McGrath, M.G. Bowden, A.W. Carroll, M.C. Flexner, and W.F. Simpson.
1999. "Field and Laboratory Standard Operation Procedures, Quality Assurance Plan, and Safety
Control Plan for Conducting Sediment and Nutrient Total Maximum Daily Loads," U.S.
Environmental Protection Agency, Region 4.

Rosgen, D.L.  1996. Applied River Morphology. Wildland Hydrology, Pagosa Springs, Colorado.

Stamey, T.C.  1999. "Surface Water Quality-Assurance Plan," U.S. Geological Survey, Georgia
District," Open-File Report 99-71. Atlanta, Georgia.

U.S. Environmental Protection Agency.  1997. "Region 4 Analytical Support Branch SOP and
QA Manual,"  SESD, EPA, Region IV, Athens, GA.
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