&EPA
United States
Environmental Protection
Agency
   Using Landscape Metrics
   to Develop Indicators of
     Great Lakes Coastal
     Wetland Condition
     RESEARCH AND DEVELOPMENT

-------

-------
                                               EPA/600/X-06/002
                                                  March 2006
                                                 www.epa.gov
    Using  Landscape Metrics
     to Develop  Indicators of
         Great  Lakes Coastal
          Wetland  Condition
       Ricardo D. Lopez1, Daniel T. Heggem1, Donna Sutton2, Tim Ehli2,
            Rick Van Remortel2, Ed Evanson2, and Lee Bice2
                 1U.S. Environmental Protection Agency
                  Office of Research and Development
                  National Exposure Research Laboratory
                  Environmental Sciences Division
                  Landscape Ecology Branch
                  Las Vegas, NV89119


                 2 Lockheed Martin Environmental Services
                  Las Vegas, NV89119
Notice: Although this work was reviewed by EPA and approved for publication, it may not necessarily reflect official
    Agency policy. Mention of trade names and commercial products does not constitute endorsement or
    recommendation for use.
                U.S. Environmental Protection Agency
                Office of Research and Development
                    Washington, DC 20460

-------

-------
                                         Notice
The information in this document has been funded by the United States Environmental Protection Agency
and the Great Lakes Commission. Although this work was reviewed by EPA and approved for
publication, it may not necessarily reflect official Agency policy. Mention of trade names or commercial
products does not constitute endorsement or recommendation by EPA for use.
                                                                                         in

-------

-------
                            Cover Image Description
The Saginaw Bay coastal area contains several regions of a coastal wetland ecosystem, shown from Point
Lookout in Arenac County, Michigan, to Sand Point in Huron County, Michigan. Watershed percent
wetland in the United States portion of the Great Lakes Basin is shown (center, inset), a general landscape
characteristic that is an indicator of coastal wetland condition within 1-kilometer of the shoreline.

-------
VI

-------
                               Acknowledgements
The Great Lakes Coastal Wetland Consortium funded this project. We sincerely thank Tom Rayburn, Ric
Lawson, and Dr. John Schneider for their expertise and support of the project. We are grateful to Dr. John
G. Lyon for his thoughtful expertise and comments regarding this manuscript and other Great Lakes
topics that are the bases of this work. The U.S. Environmental Protection Agency (EPA) also funded this
project and conducted this project through its Office of Research and Development (ORD).
                                     Dedication
                     "The beauty of the sunset is doubled by the reflection."
                          Henry David Thoreau (September 7, 1854)
                                                                                     VII

-------
Vlll

-------
                                      Contents

Notice	iii

Cover Image Description	v

Acknowledgements and Dedication	vii

List of Tables	xi

List of Figures	xiii

Executive Summary	xix

Chapter 1  Great Lakes Coastal Wetlands and Landscape Metrics	1
       Background	1
       Report Objectives	6

Chapter 2 Using Landscape Metrics and Indicators	9
       Concepts and Acceptable Uses	9
       Metrics and Indicators	11
          Landscape Scale and Gradients	13
          Landscape Models	15
       Selection and Use of Metrics and Indicators	15
          Regulatory Support Uses (Policy Goals)	16
          Ecological Research Uses (Science Goals)	17
       Data Variables	19
          Availability, Cost, and Quality	19
          Key Data Types	20
              Ecological Information	21
              Remote Sensing Data	21
              Geographic Information (Geospatial Data)	23
              Metric Measurability, Applicability, and Sensitivity	26
              Availability of Complementary Research	27
       Data Synthesis and Presentation Techniques	28
          Inferring Ecological Condition	28
              Habitat Suitability and Vulnerability	28
              Water Quality and Hydrologic Impairment	29
          Effectively Completing and Conveying Ecological Assessments	29
                                                                                       IX

-------
Chapter 3  Using Landscape Metrics and Indicators in Great Lakes Coastal
           Wetlands	31
       Study Area Description	31
       Ecological Vulnerability of Great Lakes Coastal Wetlands	34
       Areal Extent of Great Lakes Coastal Wetlands	36
       Inter-Wetland Spacing and Landscape Integration	37
       Proximity of Land Cover and Land Use to Coastal Wetlands	41
       Water Quality Metrics Related to Coastal Wetlands of the Great Lakes Basin	48

Chapter 4  Using a Landscape Approach for Monitoring Invasive and Opportunistic
           Plant Species in  Great Lakes Coastal Wetlands	53
       Invasive and Opportunistic Plant Species Impacts on Coastal Wetlands	53
       Combining Remote Sensing, Field-Based Measures, and GIS to Map Phragmites australis	54
       Case Study: Mapping P.  australis at the Pointe Mouillee Coastal Wetland Complex	55
          Remote Sensing	56
          Field Sampling	57
          GIS Mapping and Accuracy Assessment	60
       Ongoing Landscape Indicator Research in the Great Lakes	60

Glossary	63

Literature Cited and Resource Guide	67

Appendix A: CD Browser of Landscape Metrics for the Great Lakes Basin	77

-------
                                     List of Tables

1      Summary of Great Lakes Coastal Wetland Consortium (2004) flora and fauna indicators and their
       methods	18

2      Summary of Great Lakes Coastal Wetland Consortium (2004) physical characteristics, and
       methods for obtaining these measurements in coastal wetlands	19

3      Environmental conditions in the Great Lakes Basin and some of the potential affects upon
       coastal wetlands	35
                                                                                         XI

-------
Xll

-------
                                     List of Figures

1      The Laurentian Great Lakes, as seen from an Earth-orbiting satellite, looking toward the
       northwest from the Atlantic Ocean (from the Michigan Department of Environmental Quality)... 1

2      The Great Lakes have 9,402 miles (15,137 kilometers) of shoreline and contains the
       largest supply of fresh water on Earth (20% of the Earth's total fresh water). The Great
       Lakes are commonly shared between two nations, including eight U.S. States and one
       Canadian Province (from Michigan Department of Environmental Quality)	2
3      Cross-sectional profile of the Great Lakes and the St. Lawrence River ecosystems (U.S.
       Army Corps of Engineers, Detroit District)	2

4      Overview of the surface water drainages and ecoregions of the Great Lakes Basin
       (Government of Canada and GLNPO, 1995)	3

5      Land cover in the Great Lakes Basin as seen from space, using (a) 4-class system that
       describes the location of water, forest, urban, and agriculture/grass (combined) areas
       throughout the entire Great Lakes Basin (with permission from Guindon and Zhang);
       (b) a more detailed classification scheme using a combination of the U.S. National
       Oceanographic and Atmospheric Administration's 2000s C-CAP  land cover and
       Canada's Ontario Ministry of Natural Resource's 1990s land cover data sets	5
       Orientation map for study area used to provide several examples of coastal wetland
       landscape metric maps for the entire Great Lakes Basin. These maps are included in this
       report (Chapter 3 and Appendix A) to provide specific examples of the possible outcomes
       of using a landscape ecology approach for developing indicators of coastal wetland
       condition in the Great Lakes	
       The size, configuration, and connectivity of non-wetland areas within the landscape may provide
       important information about the condition of wetlands in the nearby vicinity; for example,
       those land cover and land use types immediately adjacent to or within several kilometers
       of the coastal wetlands shown in this oblique aerial view of the Great Lakes coastline
       (photograph courtesy of GLNPO and Sea Grant Minnesota)	10

       A general example of how (a) land cover derived from satellite remote sensing data has
       been used to produce (b) metric maps in the Great Lakes Basin. These metric maps can
       then be used to develop indicators of coastal wetland condition	12
                                                                                           xin

-------
9      An oblique aerial view of a coastal wetland complex. Coastal wetland complexes like this are
       important landscape elements and their ecological functions provide many human services such
       as water quality improvement and flood attenuation. Wetland complexes can be described in
       terms of its wetland, open water, upland, and other biophysical components. An area of the
       landscape, such as the area depicted in this image or the entire Great Lakes Basin, can be
       described as patches of ecosystems, vegetation associations, and patch metrics such as size,
       topographic position, interspersion, orientation, and relative proximity to components in the
       landscape                                                                              14

10     Wetland inventory data (shown solely) for the Great Lakes Basin is available to the public,
       but is variable in coverage completeness, class consistency, and is generally based
       on conditions in the 1980s. Digital wetland maps for Ontario, Canada, are pending but
       wetland maps may be available near some urban areas, at coarse resolutions, or in
       non-digital formats (map courtesy of the Great Lakes Commission and the Great Lakes
       Coastal Wetland Consortium)	20

11     Airborne multispectral imagery (e.g., Positive System's 1-meter spatial resolution, 4-band
       "ADAR" data) is available for specific areas and may be used to correlate land-use changes with
       wetland alterations, at local to regional scales, such as is shown in the Wildfowl Bay region of
       Saginaw Bay (Lake Huron)	23

12     Satellite-based sensors can measure light reflected from the Earth's surface and may be used to
       identify general vegetational characteristics, such as relative greenness of plants (mid-1980s),
       based on chlorophyll content of living  parts of the plants on the ground in the Great Lakes  Basin.
       Imagery courtesy of Dr.  Bert Guindon, Canada Centre for Remote Sensing	24

13     The Great Lakes Basin study area, showing the hydrologic units where landscape metrics are
       described	32

14     Regions within each of the (a) full hydrologic units, (b) 10-kilometer, (c) 5-kilometer, and  (d)  1-
       kilometer regions of the  Great Lakes Basin (shown solely here  for the United  States) are mapped
       in Chapter 3 and Appendix A of this report. Because the relatively narrow coastal regions are
       indistinguishable at the broad scale, and difficult to portray using a full-basin map, each of the
       metrics in this report (where  applicable) is reported by coloring the full hydrologic unit associated
       with that length of coastal area per the  legend color described for each metric	33

15     Areal extent of coastal wetlands is mapped here as  percent of 1-kilometer coastal
       region among coastal watersheds in the United States (a) and Canada (b). Percent
       coastal wetland is calculated by dividing the number of wetland land cover cells in the
       coastal region of each watershed (i.e., the reporting unit) by the total number of land
       cover cells in the reporting unit minus those cells classified as water. This
       measurement has potential for measuring and comparing wetland contribution among
       watersheds and may be used to indicate potential for wetland removal or reduction in
       the amount of pollutants entering the Great Lakes. The relative extent of coastal
       wetlands may also be developed into a quantitative indicator of habitat for a wide variety
       of plant and animal species	36
     xiv

-------
16     Mean wetland connectivity in a 1-kilometer coastal region of the Great Lakes Basin
       (probability of neighboring wetland), which is the mean (for a reporting unit) probability
       of a wetland cell having a neighboring wetland cell, calculated using a moving
       270-meter-square window (9 pixels x 9 pixels) across the GIS land cover data set.
       Because these analyses use two differing land cover data sets, results for (a) the U.S.
       and (b) Canada may not be directly comparable	38

17     Percentage of perforated wetland, in a 1-kilometer coastal region of the Great Lakes Basin, is
       calculated using a moving 270-meter-square window (9 pixels x 9 pixels) across the land cover,
       and generally indicates if center upland area(s) are present in a wetland. Because these analyses
       use two differing  land cover data sets, results for (a) the U.S. and (b) Canada may not be directly
       comparable	38

18     Mean distance to  closest like-type wetland, in a 1-kilometer coastal region of the Great Lakes
       Basin, is the mean minimum distance to closest wetland patch, for the  1-kilometer shore area,
       within each hydrologic unit. Distances were measured from edge to edge and are  reported in
       meters. This metric is useful in determining relative wetland habitat suitability at  scales that are
       ecologically meaningful for specific plant and animal taxa.  Because these analyses use two
       differing land cover data sets, results for (a) the U.S. and (b) Canada may not be directly
       comparable	39

19     The Shannon-Wiener Index, in a 1-kilometer coastal region of the Great Lakes Basin, is
       one of several ways to measure the diversity of land cover types within a specific
       area of the landscape. The Shannon-Wiener Index value increases as the number of
       land cover types within the reporting unit increases. Because these analyses use
       two differing land cover data sets, results for (a) the U.S. and (b) Canada may not be
       directly comparable	40

20     Simpson's Index, in a 1-kilometer coastal region of the Great Lakes Basin, is a measure of the
       diversity of land-cover types within a specific area of the landscape. Simpson's Index is a
       measure of the evenness of the distribution of land-cover classes. Because these analyses use two
       differing land cover data sets, results for (a) the U.S. and (b) Canada may not be directly
       comparable	41

21     The percentage of urban land cover, in a 1-kilometer coastal region of the Great Lakes Basin, is
       calculated by dividing the number of urban land-cover cells in the reporting unit by the total
       number of land-cover cells in the reporting unit minus those cells classified as water (i.e., total
       land area). High amounts of urban land indicate substantial modification of natural vegetation
       cover and may affect the condition of wildlife habitat, soil erosion, and water quality in coastal
       areas. Because these analyses use two differing land cover data sets, results for (a) the U.S. and
       (b) Canada may not be directly comparable	42
                                                                                              xv

-------
22     Human population density (individuals/km2) approximated in the 1-kilometer coastal
       region of the Great Lakes Basin. Population density is calculated by summing the number of
       people living in the reporting unit and dividing by the reporting unit area. Where census units are
       not completely contained within the reporting  unit, population is apportioned by area. High
       population densities are generally well correlated with high amounts of human land uses,
       especially urban and residential development.  Large areas of development often involve
       substantial modification of natural vegetation cover that may have substantial effects on wildlife
       habitat, soil erosion, and water quality	43

23     Road density (km road/km2) in a 1-kilometer coastal region of the Great Lakes Basin.
       The density of roads is calculated by summing the length of roads and dividing by the
       area of the reporting unit. Values are reported  as length of all road types (i.e., freeways,
       highways,  surface streets, rural routes, and other roadways) per reporting unit area.
       High total road densities are generally well correlated with high human population
       and urban development in the coastal region	44

24     Percent impervious surfaces are mapped within a 1-kilometer coastal region of the Great
       Lakes Basin (U.S. side). The percent of total impervious area is calculated using road
       density as the independent variable in a linear  regression model (May etal, 1997)	45

25     Percent agriculture adjacent to wetlands is mapped within a  1-kilometer coastal region of
       the Great Lakes Basin (U.S. side). The percentage of all agricultural land cover
       adjacent to wetlands is calculated by summing the total number of pasture and
       cropland land-cover cells directly adjacent to wetland land-cover cells in the reporting
       unit and dividing by wetland total area in the reporting unit	46

26     The percentage of urban land cover adjacent to wetlands is mapped within a 1-kilometer
       coastal region of the Great Lakes Basin (U.S. side). Percent urban is calculated by
       summing the total number of urban land-cover cells directly adjacent to wetland land-
       cover cells in the reporting unit and dividing by wetland total area in the reporting unit	47

27     Rainfall-derived erosivity (R factor) within the Great Lakes Basin (U.S. side). This
       metric is a RUSLE weighted-average rainfall-derived erosivity metric, which is derived
       from a PRISM 2-km grid, and is computed on a cell-by-cell  area basis	49

28     Soil surface erodibility (K factor) within the Great Lakes Basin (U.S. side). This metric
       is a RUSLE weighted-average effect of inherent soil surface erodibility (K factor),
       which is from STATSGO data, and is computed on a cell-by-cell area basis	50

29     Soil permeability (in./hr.) within the Great Lakes Basin (U.S. side). This metric is
       derived from a STATSGO weighted-average soil permeability rate, measured in
       inches of water flow through soil layers per hour	51
     xvi

-------
30     Surface roughness coefficient within the Great Lakes Basin (U.S. side). This metric
       is a SEDMOD weighted-average "Mannings' n" surface roughness coefficient, which
       may indicate the relative slowing of runoff as a result of friction with the land surface	52

31     Some coastal marshes in the Great Lakes contain a relatively diverse vegetational
       community with high structural heterogeneity (both vertically and longitudinally), as
       shown in this Lake Erie diked coastal wetland (Lucas County, Ohio). This wetland
       (from background to foreground) contains row crop agricultural land (not visible in the
       distance), upland forest, forested wetland (far distance), emergent wetland (intermediate
       distance), floating leaved vegetation (near), and submersed aquatic vegetation
       (near). At the transitional region, between each  vegetation type, there exists a mixture
       of each vegetation type	53

32     (a) A St. Clair Delta coastal marsh (St. Clair County, Michigan) and (b) an eastern Lake
       Michigan coastal marsh (Oceana County, Michigan), each containing stands of
       P. australis. Patches of P. australis grow in many Great Lakes coastal wetlands.
       This dense and tall,  aggressively growing opportunistic plant species may reach
       heights of up to 3.1  meters, stem densities of up to 52 stems per square meter,
       and up to  71 percent cover in the canopy (Lopez and Nash, manuscript in review),
       depending on the location and the environmental conditions of the wetland in which
       the plant is growing	54

33     Thirteen wetland study sites in Ohio and Michigan coastal region, lettered A-M. Sites
       were sampled during July-August 2001. Magnified view (inset image) of Pointe
       Mouillee wetland complex (Site E). White arrows indicate general location of two
       field-sampled Phragmites australis stands. Field-sampled site location legend:
       Pa = Phragmites australis; Ts = Typha spp.; Ls = Lythrum salicaria; Nt = nontarget
       plant species; Gc = ground control point	56

34     Field sampling activities were an important part of calibrating the hyperspectral data: (a)
       dense Phragmites canopy and (b) dense Phragmites understory layer in the
       northernmost stand. The edges of the  stand and  the internal transects were mapped
       using a real-time-corrected global positioning system	58

35     The heterogeneity of canopy, stem, understory,  water, litter, and soil characteristics in Phragmites
       australis stands was used to calibrate  the PROBE-1™ data for the purpose of detecting P.
       australis at Pointe Mouillee (field data from the northernmost Phragmites stand sampled). The
       most, relatively, homogeneous area of Phragmites in the northernmost stand is in the vicinity of
       transect-1, quadrat-4. Pixels in the vicinity of transect-1, quadrat-4 were used in the Spectral
       Angle Mapper (supervised) classification of PROBE-1™ reflectance data	59

36     Results of a Spectral Angle Mapper (supervised) classification, indicating likely areas of
       relatively  homogeneous stands of Phragmites australis (solid blue), using PROBE-1™ data and
       field-based ecological data. Field-sampled patches of Phragmites are shown by black arrows.
       Areas of mapped Phragmites are overlaid on a natural-color image of Pointe Mouillee wetland
       complex (August 2001). Yellow "P" indicates the general location of known areas of Phragmites,
       validated with aerial photographs, field notes, and 2002 accuracy assessment
       data	61
                                                                                            xvn

-------
XV111

-------
                                   Executive Summary
Chapter 1 describes the landscape setting of the Great Lakes Basin and the breadth of environmental
issues that are relevant to a landscape approach to assessing the coastal wetlands of the entire basin. The
objectives of this report are described in this chapter.


Chapter 2 discusses landscape ecology and the metrics and indicators used to assess ecological condition,
and it addresses the quality, availability, and cost of data, metrics, and indicators, as well as useful data
analysis and presentation techniques.


The information in Chapter 3 is designed to present some of the key ecological metrics in the Great Lakes
that would be of particular interest and applicable to coastal areas. The selected metrics presented in this
chapter and Appendix A include:

    1)  Areal extent of coastal wetlands

    2)  Distribution of coastal wetlands

    3)  Proximity of other land cover and land use types to coastal wetlands

    4)  Ecological vulnerability of coastal wetlands

    5)  Water quality  metrics, as related to coastal wetlands
        I 0- 35
        I 35 - 53
        53-66
        66- 75
        I 75 - 88
        Nol Available
GIB Landscape Metrics
 1 km of Shoreline
     Quantile
 Mean wetland connectivity
 Probability of neighboring wetland)
                                    0    100   200
0  100
-_—
Kilo mete i
| 0 - 56
| 56 - 65
 65 • 69
 69 - 78
| 7B - 92
 Not Available
GLB landscape Metrics
 1 km of Shoreline
     Quantile
 Mean wetland connectivity
(Probability of neighboring wetland)
                                                 0  100 200

-------
Chapter 4 describes the application of the landscape ecological approach to map invasive and
opportunistic plant species, using common reed (Phragmites australis) as an example. In combination
with the broad-scale landscape metrics described in this report, an integrated landscape ecology approach
can be used to simultaneously conduct cost-effective monitoring and determine the potential effects of
landscape disturbance on the influx and spread of species throughout the entire Great Lakes Basin.
Discussions of ongoing efforts and recommendations for future assessments of like those in this chapter
are included.
     xx

-------
                                        Chapter 1
        Great Lakes Coastal Wetlands and Landscape Metrics

Background

The Laurentian Great Lakes is an
ecological system (i.e., an ecosystem)
that is comprised of five large lakes (i.e.,
Lake Superior, Lake Michigan, Lake
Huron, Lake Erie, and Lake Ontario),
several small lakes, and their connecting
channels (Figure 1). The lakes are
bordered to the north by the Canadian
Province of Ontario, and to the south by
eight U.S.  states (Minnesota, Wisconsin,
Illinois, Indiana, Michigan, Ohio,
Pennsylvania, and New York). The
Great Lakes ecosystem (hereafter, Great
Lakes) forms the largest aggregated
surface water body system on Earth, and
comprises approximately 20% of Earth's
surface water. The polar ice caps are the
only other area that contains more fresh
water, and the freshwater at the poles is
predominantly frozen and biologically
unavailable. The Great Lakes are
therefore a major ecological contributor
to the biosphere  (e.g., regional climate
and migratory wildlife), and have been
of tremendous economic benefit to humans since European settlement of the Great Lakes region in the
17th Century. Covering approximately 250,000 square kilometers and draining a watershed area of
approximately 500,000 square kilometers, the "freshwater seas" of the Great Lakes hold an estimated 5.7
quadrillion liters of water, which is approximately 80% of the requirements for annual water supply in the
U.S. (U.S. EPA, 2004). Spread evenly across the contiguous 48 states, the Great Lakes' water would be
9.5 feet (i.e., 2.9 meters) deep (GLIN, 2004).

Lake Superior is the  largest (Figure 2) and the deepest (Figure 3) of the five Great Lakes and could hold
the water of the four other lakes, combined. Lake Michigan is located entirely within United States
territory and is the second deepest of the Great Lakes. Lake Huron is bound by  the lower peninsula of
Michigan and Ontario, with Georgian Bay comprising a large proportion of its water volume. The St.
Clair River, Lake St. Clair, and the Detroit River connect Lake Huron to Lake Erie, which is the
shallowest of the Great Lakes. Lake Erie is the shallowest and warmest of the Great Lakes, bounded by
the agriculturally dominated landscapes of northern Ohio and southern Ontario. The 56-kilometer long
Niagara River links Lake Erie and Lake Ontario, sending approximately 2 million liters of water per
second over Niagara Falls, through the St. Lawrence River to the Atlantic Ocean, approximately 1,600
Figure 1. The Laurentian Great Lakes, as seen from an Earth-
orbiting satellite, looking toward the northwest from the Atlantic
Ocean (from the Michigan Department of Environmental Quality).

-------
Figure 2. The Great Lakes have 9,402 miles (15,137 kilometers) of shoreline and contains the largest supply of fresh
water on Earth (20% of the Earth's total fresh water). The Great Lakes are commonly shared between two nations,
including eight U.S. States and one Canadian Province (from Michigan Department of Environmental Quality).
                                                   lh limn K'r.iii
                                                                               Si. Louis
 Figure 3. Cross-sectional profile of the Great Lakes and the St. Lawrence River ecosystems (U.S. Army Corps
 of Engineers, Detroit District).

-------
kilometers downstream (GLIN, 2004). The approximate annual outflow of water from the Great Lakes
accounts for less than 1% of their total volume (Government of Canada and GLNPO, 1995).

Despite their large size, the Great Lakes are an integration of aquatic, wetland, and terrestrial ecosystems
(Figure 4), which are subject to the effects of chemical and physical changes in the area (Schlesinger,
1997). Ecosystems of the Great Lakes watershed contain approximately 30,000,000 million people on the
U.S. side (approximately 10% of current U.S. population) and approximately 9,000,000 million lake
people on the Canada side (31% of current Canada population). Because the human population of the
Great Lakes has steadily increased over time, human-induced chemical and physical disturbances have
increased, particularly during the past 50 years. Humans have also recognized the beauty and commodity
value of the Great Lakes but have frequently ignored the fragile composition of the entire ecosystem.
However, there have been recent conservation and restoration efforts of aquatic, wetland, and terrestrial
ecosystems (Mitsch and Jorgensen, 2004). Among the many chemical and physical disturbances in the
Great Lakes, many involve hydrologic alterations that may cause increased runoff of soil, fertilizers, and
pesticides from agricultural areas, or storm water runoff from residential and commercial areas. The large
surface area of open water in the Great Lakes also makes them vulnerable to atmospheric deposition of
pollutants by precipitation, particulates, or dust (GLIN, 2004; U.S. EPA, 2004), thus entering the flow of
surface water. The coastal wetlands of the Great Lakes may thus be affected by these inputs of airborne
pollutants (Gorham, 1987).
       MAJOR WETLANDS
             j* wvtlvidi in
        rn Qniaito ant! •(*•*•*»]••
      th*l »f* too *mafl to s -lo-ii
      individually »t this seale.
                                                 ECOREGIONS, WETLANDS
                                                  AND DRAINAGE  BASINS
                                                                             CANADIAN ECOREGIONS

                                                                              ^| Lake St. Joeepn Pleina

                                                                              PB Nippon Plains

                                                                              |^| Thunder Bay Plain*

                                                                              H Suponor Highland*

                                                                              |^| Malagami

                                                                               "  Chap*eau Plain*

                                                                                 NIpMng
    UNITED STATES ECOREOIONS

    |H Northeastern Highlands

    H Efle/Onlano Lake Rain

    ^B Nomwm Appalachian Plateau and Uplands

    HB EMlvm Com B«ll Plains

    IB Hu>on/Erie Lake Plain

    ^| Soulnem MIchigarVNontiern Indiana Clay Ptet

    ^| C*nU»J Com B*tt PUins

    ^B SouUUHBtam WftBConom T«t FHalo

    ^| North Central Hardwood Foresls

    fl>l Northern Lakes and Fo
-------
Ambient natural conditions that exist within the Great Lakes, such as climate, topography,
physiochemical characteristics of the underlying geology, and hydrologic conditions all integrate and
determine the biota in a particular location. Thus, many of the coastal regions contain wetlands because
they are in areas that are relatively flat, where soils are of relatively fine particle sizes, have soils with a
high proportion of clay particles, and have relatively slow throughflow of water from upland areas to lake
open water (Linsley and Franzini, 1979). Consequently, the vegetation of these coastal wetlands is
dominated by hydrophytic plants, which are adapted to anoxic soil conditions, consequently providing
specialized habitat for animals that are adapted to foraging, breeding, or living within wetlands (Costlow
et al., 1960; Vernberg, 1981; Blom etal. 1990). Thus, coastal wetlands can serve important ecological,
economic, and societal roles in the overall functioning of the Great Lakes ecosystem, often referred to as
"wetland services" or "wetland functions" (Costanza, 1980). Coastal wetlands are a relatively small (by
number and area) subset of all wetlands in the Great Lakes, but owing to their relative rarity, their
specialized ecological functions and human services are particularly precious and important to conserve
and restore. Coastal wetlands  consist of a  narrow margin (e.g., within approximately 5-kilometers of the
coastline) along limited lengths of the Great Lakes shoreline. Coastal wetlands may also be referred to as
fringe wetlands, drowned river mouths,  or coastal marshes and these typically extend no further than a
few kilometers inland (Keough et al., 1999). Many coastal wetlands are concentrated within the large
bays of the Great Lakes, such as Saginaw  Bay and Green Bay, or in other smaller inlets, with many
occurring at the mouths of rivers that flow to the Great Lakes. A large number of smaller areas of coastal
wetland occur in all of the Great Lakes, providing the same wetland functions and human services as the
larger coastal wetlands, albeit at a finer scale.


The coastal wetlands of the Great Lakes function as corridors of resting, breeding, and foraging habitat
for birds (Prince et al, 1992). Many species offish, amphibians, and invertebrates are full-time residents
of Great Lakes coastal wetlands, with a subset of these species dependent on coastal wetlands for critical
portions of their life cycle (Leonard etal., 2000). Wetlands are one of the most biologically diverse and
productive ecosystems of the world (Mitsch and Gosselink, 2000). Thus, the plant communities within
coastal wetlands of the Great Lakes are a large contributor to the biological diversity and productivity of
the planet. In addition to providing a desirable habitat for animals and plants, vegetational communities in
coastal wetlands help to stabilize the soil in which they grow and thus reduce soil erosion in the basin
(Taylor, 1995). As a result of slowing the  flow of surface water  and uptake (and/or accumulation) of
water and its constituents, coastal wetlands can also provide  flood control, amelioration of point and non-
point source pollution depending upon the position of the wetland in the watershed, the types of
vegetation within the wetland, and characteristics of input of water and constituents to the wetland
(Government of Canada and GLNPO, 1995).

Because of their relative rarity and minor  portion of the overall landscape (Figure 5), coastal wetlands
have been particularly impacted by the conversion of land cover within and  adjacent to wetlands (Dahl,
1990; Dahl and Johnson, 1991). Many of these direct effects (e.g., draining of wetlands and conversion of
wetlands to farm land) and indirect effects (e.g.,  increased human population or construction of roads near
wetlands) are thought to result in general degradation of wetland condition by altering the hydrology of
wetlands, potentially changing the water chemistry of the wetlands, or potentially reducing the biological
diversity of the plant communities within  coastal wetlands (Ball etal., 2003). Ecological disturbance
theory suggests that the intensity and duration of such disturbances may be the key factors in the loss of
ecosystem integrity, i.e., the capability of an ecosystem to persist following the disturbance event
(Connell and Slatyer, 1977; Rapport, 1990; Keddy etal,  1993; Opdam etal, 1993). As the

-------
      400
                                                            400
E                                                                    Water
                                                                    Forest
                                                                    Urban
                                                                    Agriculture/Grasses
                                                                                       800 Miles
      _
      •
        Ontma Wnmry o
       ' USGS B-OgM hfyOf c*«.c Umt Cooo (USA i

                                                 (b
Figure 5. Land cover in the Great Lakes Basin as seen from space, using (a) 4-class system that describes the
location of water, forest, urban, and agriculture/grass (combined) areas throughout the entire Great Lakes
Basin (with permission from Guindon and Zhang); (b) a more detailed classification scheme using a
combination of the U.S. National Oceanographic and Atmospheric Administration's 2000s C-CAP land cover
and Canada's Ontario Ministry of Natural Resource's 1990s land cover data sets.

-------
severity, frequency, or duration of coastal wetland disturbances increases, the survival of the plants and
animals of the ecosystem may also decline. One of the many observable mechanisms (Odum, 1985) of the
process of ecosystem degradation is the spread of normative (i.e., invasive) species or native opportunistic
species within coastal wetlands. Such losses of plant biological diversity in coastal wetlands of the Great
Lakes have been generally described (Stuckey, 1989), and they may be an indirect effect of land cover or
land use change on the periphery or within these wetlands. Chapter 4 provides an applied use of remote
sensing, geographic information system (GIS), and field-based techniques to address the current status of
invasive and opportunistic plant species in Great Lakes coastal wetlands. Assessments of the type
described  in Chapter 4 are the first important step  toward routinely monitoring the presence of invasive
and opportunistic plant species in wetlands  across relatively large areas of the landscape. The techniques
described  in Chapter 4 can also be used in conjunction with the broad-scale landscape metrics
demonstrated in Chapter 3 and Appendix A can be used to determine the causal relationships that may
exist between landscape disturbance and the influx and spread of invasive and opportunistic plants in
coastal wetlands. Other stressor variables may also be tested in this manner (e.g., water quality
measurements, habitat characteristics, or wetland functional characteristics), depending on the objectives
of the user, and the ecological endpoint of interest. Such coastal wetland disturbances are difficult to
measure because the rate of change, the timing of the disturbance, and the length of time that the
disturbance has been present are ephemeral measures and different across the basin. Thus, it is important
to measure the broad spatial characteristics  of landscape disturbance within and on the periphery of
coastal wetlands. This report is an important first step toward measuring the spatial extent of the types of
landscape  disturbance patterns in the Great Lakes  Basin, with emphasis on coastal wetlands.


Report  Objectives

This report is designed to provide managers in the Great Lakes Basin with succinct answers to the
following  questions:

    1)   What basinwide information is available for the development of "landscape indicators"?

    2)   How do you use remote sensing and GIS to develop landscape indicators of ecological condition
        within coastal wetlands?

    3)   Is the available information sufficient to detect and analyze trends in landscape indicators for the
        Great Lakes Basin?
The answers to the above questions address the following concerns of the Great Lakes research and
management communities:

    1) What influences the cost of implementing basinwide techniques for the use of landscape
       indicators of coastal wetland condition?

    2) What is the measurability of such techniques in the larger context of existing programs (e.g., what
       are the data and human resource constraints)?

    3) What is the feasibility of applying such techniques on a basinwide scale?

-------
    4) What is the availability of complementary research and how could that research be incorporated
       to enhance the landscape indicator work (see Chapter 4 for a specific case study of a
       complementary research effort involving invasive/opportunistic plant species mapping in coastal
       wetlands)?

    5) What is the potential indicator sensitivity (i.e., what are the predictive properties of an indicator)?

    6) What is the applicability of specific landscape indicators for determining endpoints (i.e.,
       ecological measurements) in coastal wetlands?


This report is based upon the ongoing research of the U.S. Environmental Protection Agency's (EPA)
Office of Research and Development (ORD), which uses remote  sensing and GIS techniques to measure
the potential for ecological disturbance in the region. High-speed computers, satellite imagery, and
historical databases with extensive spatial and temporal coverage facilitate analyses of these regionally
applicable parameters, which directly address the question of ecological condition of Great Lakes coastal
wetlands. The remote sensing and GIS techniques described in this report are two key components of
routinely measuring the extent of human-induced disturbances and the presence, extent, and condition of
coastal wetlands over such a vast geographic area. This report includes basic information that is required
to assess landscape disturbance in the Great Lakes Basin, using existing spatial data set merging and GIS
modeling.

This report and the accompanying compact disk (CD) in Appendix A provide several examples and a
practical discussion that is designed to specifically address coastal wetlands in the Great Lakes Basin and
its subbasins (Figure 6). The maps and discussion topics in this report describe the differences in
landscape conditions among watersheds, and the contextual background required to address the following
coastal wetland characteristics:

    1) Areal extent of coastal wetlands by type

    2) Wetland-adjacent land cover and land use

    3) Proximity of coastal wetlands to anthropogenic stressors, including agriculture, urban
       development, and roads

    4) Potential effects of anthropogenic stressors and "natural" land cover types in the vicinity of
       wetlands, as they relate to:
           •   ecosystem structural characteristics
           •   plant and animal habitat vulnerability
           •   water quality


This report describes landscape composition and pattern, and how such distributions may affect key
ecological processes  (e.g., those processes that govern the flow of energy, nutrients, water, and biota
through time and space). If we can successfully map the composition and pattern of landscape conditions,
then these characterizations can be used to identify and characterize landscape vulnerability (i.e., risk of
degradation as a  result of disturbances), such as those disturbances that are directly and indirectly
associated with natural and human-induced stressors  (U.S. EPA,  2003). The broad-scale disturbances
described in this  report include those that may result in coastal wetland ecosystem degradation as a result
of fragmentation, agricultural and urban development, and hydrologic alteration in or on the periphery of

-------
coastal wetlands. Much is still unknown about ecological relationships between stressors and the
ecological condition of coastal wetlands, or other ecosystems, particularly at broad scales. Thus, at this
time it is difficult to make objective assessments of Great Lakes coastal wetland condition on a basinwide
scale, and to definitively determine the best ecological measurements that are indicative of coastal
wetland condition, i.e., to determine ecological indicators. These problems stem from the lack of
availability of appropriate monitoring data, at multiple scales, despite the continued deteriorating
conditions within Great Lakes coastal wetlands (Consortium, 2003a).


In addition to a description and demonstration of basinwide landscape metrics, and their applicability to
developing basinwide ecological indicators, the last chapter provides a specific example of how to
implement a broad scale coastal wetland assessment, using a combination of the remote sensing, GIS, and
field-based techniques described throughout the report. The case study describes the use of the techniques
from this report to map invasive and opportunistic plant species. U.S. EPA is currently using the resulting
maps of coastal wetland invasive/opportunistic plant species, in combination with the basinwide
landscape metric maps to determine potential causal relationships between landscape disturbance and the
influx and spread of invasive and opportunistic plants in coastal wetlands.
                   Hydrologic Unit Types
                   • United States 8-digit HUC
                     Canada Subsubdivision
GLB Landscape Metrics
    Orientation Map
      Metrics within
    hydrologic units &
    1 km, 5 km, 10 km
       of shorelines
0  100  200

 Kilometers
   Figure 6. Orientation map for study area used to provide several examples of coastal wetland landscape metric
   maps for the entire Great Lakes Basin. These maps are included in this report (Chapter 3 and Appendix A) to
   provide specific examples of the possible outcomes of using a landscape ecology approach for developing indicators
   of coastal wetland condition in the Great Lakes. A detailed image of watershed identities is available in Appendix
   A.

-------
                                        Chapter 2


                  Using  Landscape Metrics and Indicators


What do we mean by "landscape" ecology? The interdisciplinary science of landscape ecology examines
the distribution (i.e., patterns) of ecological communities or ecosystems, the ecological processes that
affect those patterns, and changes in both the patterns and processes over space and time (U.S. EPA,
200 la). Sometimes the broader context of land and conditions surrounding the ecological communities or
ecosystems of interest is referred to as "the landscape," which serves as a conceptual unit for the study of
spatial  patterns in the physical environment and the influence of these patterns on important
environmental resources. Although basic ecological theory and concepts are underlying landscape
ecology, it is different from some fundamental elements of traditional ecology because it takes into
account the spatial arrangements of the components or elements that make up the environment. Landscape
ecology analyses also account for the fact that some relationships between ecological patterns and
processes can change, depending solely upon the scale at which the observations occur. The discipline of
landscape ecology also includes the analyses of both humans and their activities as integral parts of the
environment (Jones etal, 1997).

Thus, a landscape is not solely defined by its size, but by an interacting mosaic of elements (e.g.,
ecosystem types), which is relevant to some  phenomenon or ecosystems of interest, such as coastal
wetlands and their ecological functions and services. Landscape ecology provides the ideal theoretical
framework for analyzing spatial patterns  relative to ecological condition and risk when it is desirable to
assess a vast area, such as the Great Lakes Basin.

We present the "landscape ecology" approach in this report as one  of the techniques for developing
indicators of coastal wetland condition, in an effort to solve the real-world problems of protecting and
restoring these areas, while assisting in the formulation of solutions that are beneficial to the public.


Concepts and Acceptable Uses

For a variety of reasons, some  regulatory agencies and research communities have found it a challenge to
complete basinwide assessments of Great Lakes coastal wetland conditions (Consortium, 2004a). Some of
the difficulty is related to the paucity of useful information, even in limited coastal areas, resulting in data
for less than half of the ecological measures  that have been identified by the 1998 State of the Lakes
Ecosystem Conference (SOLEC) as important to monitor coastal wetland health. This fundamental
shortage of comprehensive information about coastal wetlands is at the heart of the reason why there is no
comprehensive long-term strategy for assessing the condition of Great Lakes coastal wetlands, an
assessment of environmental impacts from development on coastal wetlands, or an assessment of the
cumulative net (historical or projected) change of coastal wetlands. U.S. EPA is using the "landscape
ecology approach" (Turner eta/.,  2001; Brown etal., 2004) to investigate and potentially resolve these
outstanding questions about the status of coastal wetland resources in the Great Lakes, specifically by
testing  selected landscape metrics as potential indicators of ecological conditions in coastal wetlands.

Satellite and airborne remote sensing platforms, increasing available geospatial data products, improved
accuracy assessment procedures, and a theoretical construct for the "landscape ecology approach" (Turner

-------
etal., 2001; Brown etal, 2004) has allowed for the characterization of landscape conditions and
processes around the world.

Researchers have previously used the landscape ecology approach to conduct simple regional assessments
of environmental conditions, using some of the assessment results to further their goals of determining the
interaction between landscape patterns and the flow of water, energy, nutrients, and biota in the
environment (EPA, 200 la). Data about the size, shape, and connectivity of ecosystems or human-built
areas (Figure 7) have also been used to provide measurements that may be useful for indicating (i.e., by
geospatial statistical inference) the condition of other things on the ground, for example, the condition of
coastal wetlands in a particular region of the Great Lakes. Good indicators can reveal dominant ecological
changes with the most efficient use of resources, but cannot be used to determine the ecological condition
at very fine scales, for example, a specific coastal wetland reserve. Using geospatial statistical models and
incorporating our existing knowledge (from empirical studies in coastal wetlands), measurements from
the broad scale can be related to conditions in specific ecological resources, and used to verify that the
landscape scale measurements are indeed an "indicator" of the ecological  conditions on the ground. Thus,
landscape metrics of ecological condition can provide a basis for assessments of ecological condition and
can be substantiated using scientific methodologies. Caution should be exercised when contemplating the
use of landscape ecological results to make decisions at scales other than that of the original input data.
      Figure 7. The size, configuration, and connectivity of non-wetland areas within the landscape may provide
      important information about the condition of wetlands in the nearby vicinity; for example, those land cover
      and land use types immediately adjacent to or within several kilometers of the coastal wetlands shown in this
      oblique aerial view of the Great Lakes coastline (photograph courtesy of GLNPO and Sea Grant Minnesota).
     10

-------
Metrics and Indicators

The terminology used in this section is specific to ecological studies, and is important to review and
understand prior to interpreting broad scale ecological research results.

Standard measurements of ecological resources provide ecological metrics. When measured at a relatively
broad (i.e., "landscape") scale (Forman, 1995), ecological metrics (such as the percent cover of cattail in a
particular coastal wetland location) can be described as a landscape  metric, i.e., a measurement that
describes the condition of an ecosystem's critical components (O'Neill et a/., 1992). Calculation of
landscape metrics (typically derived from information on spatial form or structural relationships) requires
the use of spatial data, often displayed as a thematic map, and contained within a GIS. There are many
formats of thematic maps, and several possible GIS platforms to select from. The primary uses of
landscape metrics are the characterization of historical and current ecological condition, based on land
cover information, with the possible extrapolation of current and past information (Figure 8) to make
predictions about the future of environmental conditions. The combination and analyses of past, present,
and future ecological conditions is referred to as ecological (or land  cover) change analysis.


Indicators can be thought of as pieces of evidence, or clues, which give us information about the
condition of some environmental feature of interest (GLNPO, 1999). Indicators have significance far
beyond the actual values of the attribute measured. An indicator is a value calculated by statistically
combining and summarizing relevant data. For example, doctors use human temperature and weight to
gauge human condition, and economists use interest rates and unemployment to assess the status of
economies. Economists make seasonal adjustments for these indicators with a model, and most look at
several indicators together instead of just one at a time (Jones etal,  1997). Similarly, environmental
indicators provide pieces of information that may tell us something about the true condition of our
surroundings. An ecological indicator is defined  as a sample measurement, typically obtained by
collecting samples in the field of an ecological resource (Bromberg, 1990; Hunsaker and Carpenter,
1990). For example, collecting plant material in a coastal wetland for further measurements in a
laboratory spectrometer may provide information about the amount of trace metals in the soil  of the
wetland, indicated by the concentration of those trace metals in the leaf of the plant. The State of the
Great Lakes Ecosystem Conference (SOLEC, 2000) defines an indicator as:

    "a parameter or value that reflects the condition of an environmental (or human health)
    component, usually with a significance that extends beyond the measurement or value itself.
    Indicators provide the means to assess progress toward an objective. "

Landscape metrics can therefore be used to characterize the environment at a broad scale, and they  can be
used to develop verified landscape indicators (Jones et al, 1997), including indicators of habitat quality,
ecosystem function, and the flow of energy and materials within a landscape. Empirical ecological  studies
in coastal wetlands and other wetland ecosystems suggest that fundamental patch measurements (such as
the size of wetlands) or processes (such as net primary productivity) may be suitable as landscape
indicators of ecological condition in Great Lakes  coastal wetlands.

It is important to remember at which scale a metric (ecological metric or landscape metric) is being
applied so that the results of such analyses can be viewed in the context of actual conditions on the
ground in coastal wetlands. Many land cover gradients are subtle, but the data used for the metric may not
be appropriate for capturing such subtleties of the true gradient on the ground. For example, even
                                                                                             11

-------
a
                         . Qkitro MniilTY o< Ui« Envi
                         1 USGS B-Otgrt H*dn*>»« Un« CoOe (USA)
                         Scrub'Shrub
                         PaHtinm
                         Pfckalnr.
                                                                                                                  120 K/tOjVIET£R5
                                                                             (a)
                                                     10-2.1
                                                     12.1-6.4
                                                      6.4-12.9
                                                      119-31.8
                                                     I 318-99.3
                                                      Not Available
GIB Landscape Metrics
 1 km of Shoreline
       Quantile
      Percent urban
                                                                                                  100     200
0  100 200

 Kilometers
                                                                            (b)

                    Figure 8. A general example of how (a) land cover derived from satellite remote sensing data has been used to
                    produce (b) metric maps in the Great Lakes Basin. These metric maps can then be used to develop indicators of
                    coastal wetland condition.
                         12

-------
though plants may be good indicators of soil trace metal concentrations in wetlands, field collection of 20
plant samples throughout a coastal wetland (analyzed in the laboratory to determine the concentration of
trace metals in the leaves of each) may be inadequate to determine the concentration gradient(s) of trace
metals across an entire wetland. This is similar to the problem that occurs at broader landscape scales with
GIS data. If land cover data is provided at a 1-kilometer pixel size, that resolution of GIS data may be too
coarse to measure the true gradients on the ground (e.g., small wetlands may be missed). Thus,
two important guidelines for effectively using landscape ecology metrics and indicators at relatively
broad scales are: (1) select the most appropriate data for addressing the ecological process or "endpoint"
of interest, and (2) select the geospatial model(s) that is (are) most appropriate for detecting or describing
spatial or temporal change in the landscape. The selected landscape ecology endpoints and models can
also be adjusted or modified to help interpret the measurements, and to better understand overall
ecological conditions (Jones et al, 1997) as improved data and understanding of ecological processes
emerge.

Over time, landscape metric and indicator values can provide information on the trends in the condition of
the  ecosystem components. The information about trends helps to determine:

    1)  if it is necessary to intervene,

    2)  if so, which intervention will yield the best results, and

    3)  how successful interventions have been.


Landscape Scale and Gradients

The term scale is generally defined by the extent of information, and the grain of information. The extent
of information is the  spatial domain, or the size of the area studied for which data are available
(McGarigal, 2002). The grain of information refers to the minimum resolution or size of the observation
units, often identified as patches or digital picture elements (pixels). The pattern detected in any portion
of the land is a function of scale. Landscape ecologists often consider the scale of the information they
will use in their analyses and the gradients of land cover data or other biophysical data. In order to
understand risks to ecological resources and humans, it is important to analyze the spatial patterns of
environmental conditions on a variety of scales, e.g., ranging from a single plot in a wetland to a large
region, such as the coast of Lake Michigan.  Scientists may select metrics and indicators that reflect
environmental conditions on a variety of scales in both space and time. In this report, "fine scale" refers to
minute resolution, such as might be observed in a single plot at a particular wetland, and a "landscape
scale" or "broad scale" refers to coarse resolution, such as images acquired by a satellite that might
produce individual pixels that are 30 meters on a side. A landscape ecological investigation requires a
definition of the  scale of the input data (e.g., 30 m pixel size for land cover),  and requires the user to
understand what scale is appropriate for their particular application (e.g., animal species requirements). It
is an important responsibility of the user to exercise caution when attempting to make decisions at, or
among,  different scales of landscape ecological outputs. For example,  in this report, wetlands in the U.S.
that are  smaller than 900 m2 (i.e., the minimum pixel resolution of the  U.S. land cover GIS data) are too
small to have been detected in the land cover classification process, and even slightly larger wetlands may
be missed in the  classification process because of factors related to the physics of the satellite sensor
system used in the production of land cover data.  Therefore, broad-scale monitoring of such small
wetland areas may be difficult by directly observed landscape metrics  (Lopez et al., 2003).
                                                                                               13

-------
It is important to select gradients (i.e., changes over space and/or time) of condition(s) that offer sufficient
variability, and a sufficient number of field-sampling sites to compare among reporting units (Green,
1979; Karr and Chu, 1997, Lopez et al., 2002), in the event that ecological metrics are to be used to
develop landscape indicators. Landscape (e.g., land cover) gradients may be useful for the development of
landscape indicators because the statistical relationships between landscape metrics and ecological
metrics can give clues about how two (or more) elements of the landscape may interact, such as the
relationship between agriculture in a watershed and the concentration of phosphorus in wetlands. In
addition, the use of previously observed in situ correlations between biophysical measurements may help
to guide the analyses of relevant parameters that may be good indicators of ecological vulnerability at
moderate to coarse scales.

Prior to the advent of GIS, it was prohibitively expensive and time-consuming to calculate metrics of
landscape composition and pattern at multiple (spatial and/or temporal) scales throughout a vast area of
the landscape. Without a full understanding of the spatial and temporal patterns of landscape composition
and pattern (Figure 9), the condition of coastal wetlands and the vulnerability of these resources to loss
and degradation are limited. Landscape metrics can be correlated with ecological metrics collected in the
field at a fine scale and, using statistical inference, these correlations can be used to determine the
association between the broad scale data (the  landscape metric) and the fine scale condition (the
ecological metric). A determination of correlations between the broad scale (e.g., Riitters etal, 1995;
Jones etal., 2000; Jones etal., 2001), moderate scale (e.g., van der Valk and Davis,  1980; Roth et al,
                                                              1996; Nagasaki and Nakamura, 1999;
                                                              Faith etal, 2000; Lopez etal, 2002;
                                                              Lopez and Fennessy, 2002), and fine
                                                              scale (e.g., Peterjohn and Corel, 1984;
                                                              Murkin and Kale,  1986; Ehrenfeld and
                                                              Schneider, 1991; Willis and Mitsch,
                                                              1995; Mclntyre and Wines, 1999a;
                                                              Luoto, 2000) has not been completely
                                                              explored. The current list of potential
                                                              and operational indicators of condition
                                                              for coastal wetlands (at several scales)
                                                              of the Great Lakes Basin can be found
                                                              in proceedings of the State of the Lakes
                                                              Ecosystem Conferences (SOLEC).
                                                           I
 Figure 9. An oblique aerial view of a coastal wetland complex. Coastal
 wetland complexes like this are important landscape elements and
 their ecological functions provide many human services such as water
 quality improvement and flood attenuation. Wetland complexes can
 be described in terms of its wetland, open water, upland, and other
 biophysical components. An area of the landscape,  such as the area
 depicted in this image or the entire Great Lakes Basin, can be
 described as patches of ecosystems, vegetation associations, and patch
 metrics such as size, topographic position, interspersion, orientation,
 and relative proximity to components in the landscape.
     14

-------
Landscape Models

Because the landscape of the Great Lakes Basin is very complex, an initial focus on the relevant
biophysical characteristics (i.e., excluding fewer relevant biophysical characteristics) is an important first
step toward developing  landscape indicators. GIS is a key tool that can be used to focus on relevant
features of the landscape. For example, a GIS-derived landscape metric, such as percentage of cropland
area among watersheds, can be correlated with water quality parameters at a location that is known to be
the outlet of a watershed, and a geostatistical model can then be developed. The relationships might be
analyzed as a causal (predictive) relationship, perhaps using a regression model with  watershed condition
as the independent variable(s)  and water quality parameter(s) as the dependent variable(s). The causal
relationships of these variables might be based on a priori knowledge acquired as a result of previously
published in situ studies of similar variables, and ecological theory as a whole. Broad scale models
founded on the ecological principals of in situ studies may be limited by a lack of detailed information
about small areas, but can serve as a preliminary tool to assess large areas that would otherwise be
impractical to assess in  the field, or where full coverage of detailed GIS data is absent. A specific and
contemporary example  of how to use remote sensing, GIS, and field-based techniques in Great Lakes
coastal wetlands is demonstrated in Chapter 4, which may be used to determine the potential causal
relationships between landscape disturbance, as  described with broad-scale landscape metrics (the
independent variables),  and the influx and spread of invasive and opportunistic plants (the dependent
variables) in coastal wetlands.  Other stressor variables may also be tested in this manner (e.g., water
quality measurements, habitat  characteristics, or wetland functional characteristics), depending on the
objectives of the user, and the  ecological endpoint of interest.


Selection  and Use of Metrics and Indicators

Landscape metrics and  landscape indicators (derived from the metric) may be used to assess progress
toward one or more objectives (SOLEC, 2000). Thus, the selection and use of metrics and indicators
should be guided by the purpose for which the information will be used, whether research oriented or
policy oriented. Depending upon the use, the relative importance of quality, cost, and completeness of the
coverage of the metric or indicator may differ for the user.

There is crossover between the goals of pure research landscape ecologist and the policy uses of the
results. The crossover between landscape ecology science and policy is a result of the common primary
goals of each  perspective, which are essentially focused on  identifying key indicators of ecological
condition that can serve as sentinels of important change. Despite this common primary goal, the
differences between the scientific and policy uses of landscape ecology can be profound, and is generally
a result of differing secondary goals. The common primary goals of the research (red) and policy  (blue)
communities are summarized below (note: all topics are being addressed to some extent by both groups,
although not always as  a primary goal):

    1)  Assess changes in the  condition of the ecosystems and the progress toward achieving
       management goals for its sustainable well-being.

    2)  Improve understanding of how human actions affect the ecosystems and determine the types of
       programs, policies, or  regulations needed to address the environmental impacts.

    3)  Gain  a clearer understanding of existing and emerging environmental problems and their
       solutions.
                                                                                             15

-------
    4)  Provide information that assists the public and stakeholders in participating in informed decision-
       making.

    5)  Provide information that will help managers better assess the success of current programs, and
       provide a rationale for future ones.

    6)  Provide information that will help set priorities for research, data collection, monitoring, and
       cleanup programs.

Regulatory Support Uses (Policy Goals)

As environmental regulations  were initially being developed in the United States, there was a focus on the
established measures of environmental quality, such as those for drinking water and air quality. These
measures reflected a traditional view of the environment and the potential for multiple factors that may
contribute to environmental degradation (Jones et a/., 1997). Research that was supported by regulatory
agencies addressed the need to make policy recommendations to decision-makers, but did not fully
address the scientific (i.e., ecological research) community's goal of increasing our understanding of the
interrelationships between abiotic and biotic parameters (Zandbergen and Petersen, 1995).

Thus, landscape indicators were initially developed as lists of physical and chemical measures to monitor
improvements in water quality. Biological responses resulting from changes were not considered.
Requirements for environmental impact statements led to development of procedures to evaluate habitat
as the basis for environmental assessment. As government policies endeavored to protect both human
health and the environment  from the byproducts of an industrial economy, scientific research required a
different approach to support these policies. Awareness of the scope of environmental problems increased
and toxic substances became a concern. A variety of tissue, cellular, and subcellular indicators were
developed as diagnostic screening tools or biological markers, to evaluate the physiological condition of
an organism and to detect exposure to contaminants. The need to develop management strategies able to
address interactions within ecosystems and the impacts of human activities upon those natural  systems
became another stimulus for the development of indicators.

The development and use of indicators that meet all of these needs is a learning process for both the
scientists who develop them and for the policy makers who use them. Scientific knowledge itself is the
outcome of a consensus-building process among scientists from different disciplines who require easily
interpretable descriptions of ecological condition (Zandbergen and Petersen, 1995). Developing landscape
indicators involves the collection and management of supporting data, the identification and use of
selection criteria, the evaluation of indicators for their efficacy, and accounting for the influence of scale
on the final product. Landscape indicators are an important input to a Decision Support  System, which
can be utilized by policy makers and environmental professionals who require the  most up-to-date and
accurate information for determining effective strategies for ecological monitoring, assessment,
restoration, characterization, risk assessment, and management.
     16

-------
Ecological Research Uses (Science Goals)

The current ecosystem concept and approach to studying ecological interrelationships was conceived as a
multidisciplinary, problem-solving concept with the goals of restoring, rehabilitating, enhancing, and
maintaining the integrity of particular ecosystems. The answers to scientific questions posed within
ecosystems have created a new list of scientific questions that focus on how these ecosystems interact
with the surrounding biophysical environment, and thus have spurred a new area of investigation into the
pattern of land cover and the implications of that land cover pattern on the ecosystems that are
"embedded" within the land cover (e.g., a coastal wetland that is embedded in a larger landscape of
agricultural crop land). None of these relationships have been fully field tested across a vast area, yet
many landscape indicators have been conceptually proposed, i.e., developed from theoretical ecology
(EPA, 200 la). Very few results are available that show comparisons of landscape metrics or metric
performance at different scales (Cushman and McGarigal, 2004), but some of these relationships have
been preliminarily analyzed, and several new patterns have just recently been explored throughout the
entire Great Lakes Basin for coastal wetlands (Appendix A).

The indicators listed below are currently under evaluation by the Great Lakes Coastal Wetlands
Consortium (GLCWC, 2004a) and include biophysical measurements that directly relate to ecological
endpoints within coastal wetland of the Great Lakes. Many of these indicators are addressed at a
landscape scale in Appendix A.

    •   Amphibian community condition
    •   Areal extent of wetlands by type
    •   Bird community condition
    •   Contaminant accumulation
    •   Extent of upstream channelization
    •   Fish community condition
    •   Gain in restored wetland area by type
    •   Habitat adjacent to wetlands
    •   Human impact measures
    •   Invertebrate community condition
    •   Land-use classes adjacent to wetlands
    •   Land-use classes in watersheds
    •   Phosphorus and nitrogen levels
    •   Plant community condition
    •   Proximity to navigable channels
    •   Proximity to recreational boating activity
    •   Sediment flow and availability
    •   Water level

The GLCWC also recommends the following six criteria (2004b) that should be applied when selecting
landscape indicators that are applicable to Great Lakes coastal wetlands:

    •   Cost and level of effort to implement basinwide
    •   Measurability with existing technologies, programs, and data
    •   Basinwide applicability or sampling by wetland type
    •   Availability of complementary existing research or data
                                                                                             17

-------
    •   Indicator sensitivity to wetland condition changes
    •   Ability to set endpoint or attainment levels


Acquisition of information about a number of indicators relating to physical characteristics of wetlands
and their surrounding environment has previously been conducted by the GLCWC (Table 1 and Table 2),
such that the data will provide integrated flora and fauna measurements, rather than be solely used as
individual indicators of coastal wetland condition  (GLCWC, 2004b). The indicator summaries (Table 1
and Table 2) can be useful in the initial conceptualization stages of developing landscape ecological
indicators by ensuring that geospatial data will adequately address ecological endpoints. Field
methodologies that are  necessary to validate landscape gradients or to test landscape indicator sensitivity
are included for flora and fauna  (Table 1) and physical measurements (Table 2). Field methodologies may
be modified to directly address the ecological endpoint of the specific sensitivity of the landscape
metric/indicator, as needed. The GLCWC's effort includes collection of contemporary and historical data
from existing monitoring stations, and can be used within a broad scale landscape  assessment such as is
described in this report. GLCWC data are also being used to explain current site-specific (i.e., fine scale)
wetland conditions and to standardize conditional  measurements around wetlands. Recent results of the
GLCWC research are maintained at the following  Internet URL: http://www.glc.org/wetlands.


 Table 1. Summary of Great Lakes Coastal Wetland Consortium (2004) flora and fauna indicators and their methods.
  Indicator (SOLEC ID)
       Measurement Description
          Method Summary
invertebrate community
health (4501)
Fish community health and
DELTs (4502, 4503)
Amphibian diversity (4504)
Bird diversity and
abundance (4507)
Plant community health
(4513)
Contaminants (4506)
Diversity indices, adult caddisfly
presence/absence, and diversity.
Several diversity and abundance (fish per
meter) measures, incidence rate of DELTs
(deformities, eroded fins, lesions, and tumors).

Many possible population, diversity, and
abundance measures. Compare with extensive
measures. Species presence, abundance, and
diversity.
Intensive-many population, diversity, and
abundance measures. Compare with extensive
measures-species presence, abundance, and
diversity.

From air photos: % dominant vegetation types,
% invasive types; from floristic survey: %
wetland obligate species, % native taxa,
floristic indexes; from quantitative sampling: %
cover of invasives in dominant emergent, %
floating/submersed cover of turbidity tolerant
taxa, rate of change in invasive taxa.

Contaminant levels or physical anomalies.
Further work is needed to develop this
indicator.
Sweep nets, activity traps, backlighting,
Hester-Dendy samplers. Need standardized
processing. Need standardized habitat
sampling. Repeat visits.

Electroshocking along transects, fyke nets.
From most intensive to most extensive-
complete counts, capture-recapture, larvae
sampling, drift fences or pitfall traps, funnel
trapping, visual encounter surveys, Marsh
Monitoring Program, and audio surveys.

Intensive-territory mapping, strip censuses,
nest counts, site inventories. Extensive-MMP
survey.
Air photo compilation and interpretation,
floristic survey, and quantitative sampling.
External survey of bullheads, DELTs, or other
methods that provide useful biological
contamination metrics.
     18

-------
 Table 2. Summary of Great Lakes Coastal Wetland Consortium (2004) physical characteristics, and methods for
 obtaining these measurements in coastal wetlands.
         Indicator (SOLEC ID)
    Measurement Description
      Method Summary
 Water levels (4861)
 Sediment flow (4516)
Lake levels, wetland water levels, in/out-
flows.

Suspended sediment unit area yield
(tons/km2 of upstream watershed).
 Sediment available for coastal nourishment   Sediment budget, net accumulation/loss.
 (8142)
 Storms and Ice
 Phosphorus and total nitrates (4860)
Possible metrics include wetland form
factor, succession lag times, storm
erosion  of shore buffers; ice cover
duration, ice thickness, ice jams.

Total phosphorus and nitrates
concentrations from May to July for
correlation with other metrics. Further
work is needed to develop this indicator.
Data obtained from lake gauges.
Metric should be estimated from
gauging stations upstream of
wetland. Sediment core or turbidity
measures.

Metrics measured from streamflow
and sediment gauging stations at
mouths of major tributaries.
Alternatives-geomorphic surveys of
barrier bars/islands, air photo
interpretation.

Methods vary by metric.
Metric calculated from
concentration and flow measures
from gauging stations.
Data Variables


Decisions about which type of ecological information, remote sensing data, and GIS data to use to begin a
landscape indicator development project are difficult because they require an optimization of three
important factors: (1) the cost of data (i.e., acquisition, processing, and storage), (2) the availability of the
necessary data, and (3) the quality of the data. In the planning of a landscape ecological assessment,
whether for ecological research or for regulatory support, one has to decide, for example, between the use
of an objective data source with high quality but many gaps in coverage, which would require a large
portion of available resources to collect sufficient data, or the use of other data sources, with fewer gaps
and less costly information, but requiring a reduction in reliability and comparability (Figure 10).

Availability,  Cost, and Quality

Decisions about how to evaluate and monitor the ecological condition of Great Lakes wetlands must take
into consideration the logistical challenges presented by large landscapes and the fact that assessment and
monitoring schemes must be parsimonious. Although there are many benefits associated  with exploiting
existing data, there are costs (e.g., non-contemporaneous data incompatibility) that must  be considered in
accessing those data. Long-term or wide-area data are generally accessible through major data centers.
Short-term or single-site data sets, generated to address focused scientific questions, are often available
solely from the originating organization. Overall cost of any landscape assessment is affected by the
availability of existing data, its source (whether from a public, nonprofit agency, or from private for-profit
companies),  and its quality.
                                                                                                    19

-------
                             Wetlands Polygon Coverages
                        for the US Side of the Great Lakes Basin
                                  (Indexed by USQS 7.5 min Quadrangle)
                                | National Wetlands Inventory, US FWS
                                 National Wetlands Inventory, Michigan
                                 iOhio Wetlands Inventory
                                 Wisconsin DNR Wetlands Inventory
 Figure 10. Wetland inventory data (shown solely) for the Great Lakes Basin is available to the public, but is variable
 in coverage completeness, class consistency, and is generally based on conditions in the 1980s. Digital wetland maps for
 Ontario, Canada, are pending but wetland maps may be available near some urban areas, at coarse resolutions, or in
 non-digital formats (map courtesy of the Great Lakes Commission and the Great Lakes Coastal Wetland
 Consortium).

Existing data are often fragmented and dispersed among many sources, depending on the geographic and
environmental areas considered. This problem is  especially relevant when local information is needed at a
broad scale for land management tasks, such as coastal wetlands of the entire Great Lakes Basin. In
addition, databases are created in several formats or geographic projections that may not be interoperable.
These are important issues to understand prior to selection of the data and/or metric.

U.S. federal agencies are likely to be the primary lower cost sources for data that include maps of
elevation, watershed boundaries, road and river locations, human population, soils, land cover, and air
pollution. Sources include the U.S. Army Corps of Engineer; National Oceanographic and Atmospheric
Administration; U.S. Geological Survey; the U.S. Environmental Protection Agency; the U.S. Department
of Agriculture; the U.S. Census Bureau; and the Multi-Resolution  Land Characteristics Consortium.
Resources may consist of databases, raw or preprocessed remote sensing data, digitized maps, and
GIS/statistical models or software. Data types that use standard methodologies, such as those that comply
with the Federal Geographic Data Committee (FGDC), provide data for which reliability is high,
availability assured, identified sources, and good comparability. In the absence of these data quality
assurances, large quantities of data may be available at lower costs, but with an increased risk of
noncomparability, low reliability, and uncertain future availability.

Key Data Types

The types of data that may be available for landscape indicator development include ecological
information, remote sensing data, and geographic information. Ecologists have traditionally used
historical maps, aerial photographs, and their understanding of spatial relationships between ecosystem
patches to explore relatively broad scale ecological characteristics  of the landscape (e.g., Miller and  Egler,
1950; MacArthur and Wilson, 1967; Howard, 1970). Airborne digital data is useful  for determining  the
abiotic conditions of Great Lakes coastal wetlands (e.g., Lyon and Drobney, 1984; Lyon and Greene,
     20

-------
1992; Lyon et al., 1995). The inherent complexity of wetland ecosystems and the particular ecological
processes of coastal wetlands have also prompted development of, and research into, the use of
specialized airborne and satellite sensors, and related processing techniques for these new datatypes.
Within the past decade, environmental scientists have successfully integrated and applied the use of
relatively sophisticated sensors (e.g., airborne hyperspectral, airborne multispectral, and satellite
multispectral scanners), automated image processing software/techniques (e.g., ERDAS' Imagine,
http://www.gis.leica-geosystems.com/; RSI's ENVI software, http://www.rsinc.com), and the computing
power of GIS (e.g., ESRI's ArcView and Arclnfo, http://www.esri.com) to the study of ecology.
However, most of these tools are relatively new, and the application of multiple sensors and techniques to
wetland detection and analysis has not fully matured.

Ecological Information

It is possible to sample ecosystem components, such as the water, soil, air, plants, and animals, but it is
impossible to survey (i.e., fully measure all of these components throughout the entire ecosystem). Thus,
any ecological study must consider what components of an ecosystem to answer the question, "Which
ecological indicators are the best surrogates of overall ecosystem condition?" A traditional ecologist
might consider a good coastal wetland indicator as one that can be explained in its component parts, is
known a priori to be directly linked to the functional status of coastal wetlands (e.g., hydrology), and has
a demonstrable and repeatable linkage with the functional status of the wetland. A landscape ecologist
might additionally consider a good coastal wetland indicator as one that reflects conditions across
multiple  coastal wetlands, multiple watersheds, multiple lake basins, or at other more broad scales.
Environmental policy experts may be additionally interested in selecting ecological indicators that have
the greatest likelihood of answering the following related questions:

    1)  What indicators characterize and measure ecological sustainability?

    2)  What indicators best show changes caused by human impacts?

    3)  How can indicators developed in one place and time be used in other places and times?

To some extent, different measures and monitoring designs are needed to answer all of these questions,
and to answer them at local, watershed, regional, national, and basinwide scales.  While local or watershed
assessments may include fairly complete monitoring of stresses and impacts, such direct assessment is not
practical over large regions, such as the Great Lakes Basin. But there are opportunities to harmonize
assessments across spatial scales by including, together with field monitoring, advanced and less
expensive assessment methods that utilize remote sensing data.


Remote Sensing Data

Because  of the vast areas involved, and the complexity of information that is required to assess the
ecological functions within the Great Lakes Basin, remote sensing technologies have been developed to
provide an additional source  of information to  develop indicators of coastal wetland condition. However,
our ability to interpret landscape spatial patterns and identify the materials on the ground can be a
challenge because of the limits of the spectral (e.g., detectable energy wavelengths) and spatial (e.g.,
minimum pixel size) properties of the sensor. Remote sensing data are often mistakenly thought to be less
useful than observations that are made on the ground within ecosystems of interest. However, field-based
measurements (e.g., 1,000  sample points within a wetland) are not as comprehensive as remote sensing
                                                                                              21

-------
data and thus may be relatively less effective at determining the true type, number, and distribution of
some of the key elements of an ecosystem (e.g., wetland plant species distribution). Remote sensing data
can supplement the inability of investigators to effectively sample a wetland by providing "wall to wall
coverage" (e.g., a complete coverage; a full image that assesses a wetland from edge to edge of the
ecosystem).

The inherent tradeoff of having a full coverage of remote sensing data, rather than a field sample, is being
distant from the wetland and consequently having the (satellite or airborne) image picture elements
(pixels) at sizes that are coarser grain than field-based observations, but having a complete coverage of
these data.  This is the reason why remote sensing data (or derived geospatial data) should be thought of as
a supplement to field-based information, and not as a replacement for field-based information.

It is important to determine the scale of ecological information that is necessary to assess the ecological
condition of coastal wetlands prior to determining which types of remote sensing data are required for the
assessment. For example, if the goal is to measure simple spectral characteristics  (e.g., measuring for the
presence and area of large open water areas), then it is not necessary to have fine scale spectral or spatial
resolution information, and satellite (e.g., MODIS or Landsat) data should suffice. If the goal is to
measure more complex characteristics of coastal wetlands (e.g., the presence and location of all emergent
vegetation, combined), then it may be necessary to acquire data with  higher spatial resolution for those
areas of vegetation (e.g., a 50-meter-wide patch of cattail on the edge of a marsh) and can still be used to
cost-effectively cover a vast area, such as the entire coastline  of the Great Lakes Basin (e.g., Landsat
Thematic Mapper data with 30 meter pixel resolution). The appropriate spatial resolution of remote
sensing data is thus determined by the ecological  investigator deciding what the minimum conceivable
level of spatial information is necessary to adequately assess coastal wetlands and then determining the
optimal pixel size that provides that information, in the context of the cost and availability factors. The
spectral resolution necessary for the landscape assessment is determined similarly by the ecological
investigator deciding what the minimum conceivable level of spectral information (e.g., how much
information must be directly extracted from the reflectance of plant leaves) is necessary to adequately
assess the condition of coastal wetlands, and to address the ecological endpoints.  The ecological
investigator should also determine whether there is a need for temporal data analyses in the future, and at
what frequency the remote sensing acquisition might be required to adequately assess the  condition of
coastal wetlands. All remote sensing platforms (e.g., airborne or satellite equipment) have differing return
(i.e., repeated overflight) rates, ranging from approximately daily, to  once every several weeks.

Because the characteristics of land cover or land use in the vicinity of coastal wetland may determine the
condition of the coastal wetland, and these conditions may change over time, it is often desirable to assess
these features repeatedly overtime using remote sensing. Stresses related to land cover and land use may
be those directly caused by humans, such as agricultural, urban, and industrial  development. Other
human-induced disturbances in coastal wetlands include those associated with  upland development,
shoreline development, deforestation, changes in upland agricultural  practices, road construction, dam
construction, or other hydrologic alterations. These changes or activities can be directly observed or
inferred using remote sensing. Aerial photographs (generally  1-meter spatial resolution) or airborne
digital imagery (generally a 1-5 meter spatial resolution) is often available for specific areas and can be
used to correlate land-use changes with wetland alterations (Figure 11).
     22

-------
Figure 11. Airborne multispectral imagery (e.g., Positive System's 1-meter spatial resolution, 4-band "ADAR" data)
is available for specific areas and may be used to correlate land-use changes with wetland alterations, at local to
regional scales, such as is shown in the Wildfowl Bay region of Saginaw Bay (Lake Huron).


Land use and land cover data are most often derived from some type of overhead remotely sensed
imagery, such as aerial photographs, airborne digital data, or satellite digital data. Data collected by
satellites are most often used to map land cover over vast areas like the Great Lakes Basin and have been
used to measure changes over time. With a few exceptions, most of the sensors carried on satellites
measure light reflected from the Earth's surface. Because different surfaces reflect different amounts of
light at various  wavelengths, it is possible to  identify general vegetational change (Figure 12) or broad
land cover types (Figure 5) from satellite measurements of reflected light. Examples of how land cover
maps, derived from satellite multispectral data, are shown in Chapter 3, and can be  used to develop
landscape indicators of coastal wetland condition.

Remote sensing data are the  source for much of the derived land cover and land use data sets that are used
for GIS analyses and modeling. Generally, GIS products are derived by either manual remote sensing data
interpretation or semi-automated image processing. The examples in this report include indicator
development, using a variety of high and intermediate (Chapter 4), and low (Chapter 3) spatial and
spectral resolution digital remote sensing data.

Geographic Information (Geospatial Data)

Geographic information describes the locations of landscape entities and can be interpreted so that the
spatial relationships between these entities are understood. Most of the broad-scale  geographic
information produced today resides with national and state governmental groups, but is frequently
produced at fine-to-moderate scales by local governments, individuals, corporations,  and other
                                                                                               23

-------
  Figure 12. Satellite-based sensors can measure light reflected from the Earth's surface and may be used to
  identify general vegetational characteristics, such as relative greenness of plants (mid-1980s), based on
  chlorophyll content of living parts of the plants on the ground in the Great Lakes Basin. Imagery courtesy of Dr.
  Bert Guindon, Canada Centre for Remote Sensing.
nongovernmental organizations. All of the geographic information products from the U.S. that are used in
this report can be readily downloaded to your personal computer by visiting the Web site URLs that are
listed in the tables, figures, and text of this report, and which are contained within the metadata of
Appendix A. A computer and GIS software are required to process and analyze these digital geographic
data sets (e.g., using Geographic Resources Analysis Support System, http://grass.baylor.edu/; or
Environmental Science Research Institute's Arclnfo or Arc View software; www.esri.com).

The categories of geographic information cover a wide range of parameters that have been mapped (in
what is sometimes referred to as a "thematic map") at a variety of scales and may include information
about topography, human population, land cover, land use, oceans, rivers, streams, lakes, wetlands, roads,
important political boundaries (e.g., counties or townships), and features of importance (e.g., national
parks, monuments, and landmarks). The level of detail described for each parameter within  a map (e.g.,
type of wetland vegetation: herbaceous and woody plants, or by plant species) is dependent upon the
spatial and spectral characteristics of the remote sensing data, from which the geographic information or
geospatial model was derived.
     24

-------
In a typical thematic map, data are digitally stored as a series of numbers that produce a map of these
values associated with each pixel in the map. These maps can be thought of as checkerboards, where each
grid pixel represents a data value for a particular landscape characteristic or "theme" (e.g., a map's
topographic theme with a point elevation value and pixel value of "2451," which defines that particular
pixel at 2451 feet above sea level). A GIS can be used to view and measure landscape metrics or
indicators, using a variety of methods. One method called "overlaying" simply examines several different
themes to extract information about the spatial relationships among the themes. For example, by
overlaying maps of land cover  and topography, the analyst can look at the occurrence  of agriculture on
steep slopes, using an overlay of land cover (which includes agriculture locations) on topography (which
includes elevational change, i.e., slope, across the entire landscape). These  relationships can be digitally
stored as a new map, which combines the information from the original set of thematic maps. Another
method called  "spatial filtering" can be thought of as using a "window" to calculate values within small
areas that are part of a larger map. Spatial filtering  can be used to create surface maps  of metric or
indicator values that help to visualize the spatial patterns of metrics or indicators in more detail than is
provided, for example, by watershed scale summaries (Jones et a/., 1997).

Because landscape ecological research involves the use of several GIS data sets, a thorough
understanding  of how these GIS data sets can be  integrated and managed is important during the early
stages of the research. With the rapid growth in GIS software and applications, the environmental
scientist's capability for storing, manipulating, and visualizing geographic information is becoming
commonplace  for understanding ecological data, which has shifted some of the emphasis of landscape
ecology from the GIS applications and manipulations (described in the prior paragraph) to the statistical
analysis of the geospatial data.  Such improved geospatial data analyses of the relationships between
landscape condition and the ecological functions of coastal wetlands can be enhanced by targeted (i.e.,
non-extensive) site-specific assessments, allowing for a broader-scale spatial analysis, given a well-
designed field, remote-sensing, and GIS mapping approach (see Chapter 4 case study for a specific
example of site-specific approaches to developing indicators of coastal wetland condition). Statistical
procedures can improve the understanding of the broad-scale relationships between  landscape condition
and the condition of coastal wetlands that reside, thereby allowing for larger data sets to be analyzed
using analytical techniques that allow for the inclusion of data that might otherwise  cause analysis
difficulties. Such geospatial statistical techniques have demonstrated initial significant relationships
between coastal wetland parameters and other mapped geographic data in the vicinity  of these wetlands,
but the strengths of the relationships can be variable, and the causal relationships are uncertain at this time
(Lopez and Nash, manuscript in review).

The potential limitations of using mapped geographic data to assess wetlands are directly related to the
capability of linking GIS-based assessments to relevant field-based assessments of wetlands (Whigham et
al, 2003), an important component of determining the accuracy of landscape indicators of coastal
wetlands in the Great Lakes Basin. This report demonstrates the initial steps in producing broad-scale
basinwide metrics of landscape condition (Chapter 3), and includes a case study that demonstrates how to
use a landscape approach to map potential landscape disturbance  receptors  within coastal wetlands of the
Great Lakes (Chapter 4).
                                                                                              25

-------
Metric Measurability, Applicability, and Sensitivity

After reviewing data availability, the next step in a landscape assessment is the selection of landscape
metrics, which requires considering three important questions:

    1)  Are the available data capable of adequately measuring the (metric) parameters, and do they
       address the ecological endpoint(s) of interest?

    2)  Are the metrics to be derived during the landscape ecological analyses applicable to the
       ecological endpoint(s) of interest, and do these results answer the questions of the audience for
       the analyses?

    3)  Are the metrics to be derived during the course of the landscape ecological analyses likely to be
       sensitive enough to provide information about the ecological endpoint(s) of interest?


Evaluation of measurability of a landscape metric must include a primary review of the expertise,
training, and methodologies used to acquire and process the remote sensing data, input and analyze the
derived GIS data, and synthesize the results of such analyses. These four measurability-related steps
require the input from individuals that have expertise in remote sensing, computer science, geography,
GIS, wetland ecology, general ecology, environmental science, chemistry, hydrology, geology, and other
relevant specialized fields. Evaluating measurability also involves an early review of prior techniques,
and determining how they may be modified to accomplish the particular goals of a landscape scale coastal
wetland assessment. It is often tempting to repeat some of the same techniques applied in other
geographic locations or in other ecosystem types, but many of the techniques in GIS and remote sensing
work do not apply to wetland assessments. One of the principal differences between landscape-scale
wetland assessments and assessments of other ecosystem types is that wetlands are, by definition, a
transitional zone between upland and open water ecosystems. Thus, there is a mixture of upland and open
water conditions, at different times in wetlands, which may lead to confusion if solely upland or solely
open water methodologies are applied to wetland ecosystems. Additionally, coastal wetlands have very
unique hydrodynamic conditions, as compared to other wetland types, and thus caution should be
exercised when merely transferring methodologies from other landscape-scale general wetland studies to
assess conditions in coastal wetlands of the Great Lakes.

The applicability of a landscape metric (or indicator, derived from that metric)  is also a critical step that a
research team should address prior to beginning the landscape assessment process. SOLEC has compiled
several lists of operational and proposed measurements that are applicable to landscape assessments and
that can be used to develop landscape indicators (Table  1  and Table 2). Not all of these measurements
have been completed at a broad scale and some have been completed solely at selected sites  around the
Great Lakes. Additional information about these measurements can be used to ensure the applicability of
landscape scale metrics for the development of landscape  indicators (see Internet URL:
http: //cfpub .binational .net/home_e. cfm).

Landscape metrics and metric-derived indicators must demonstrate that they are sensitive to (spatial and
temporal) changes that occur in coastal wetlands if they are to provide information to the relevant
audiences, determined in the "measurability" evaluation. Because all ecological systems change, metric
and indicator sensitivity must be gauged at a relevant spatial and temporal scale that makes sense for the
ecological endpoint, determined in the "applicability" evaluation. Metric sensitivity can be evaluated by
field verification and then further evaluated (as a landscape indicator) by validating a response by the
     26

-------
metric to known (and validated) drivers within, or in the vicinity of a coastal wetland ecosystem. For
example, a landscape metric that approximates nutrient conditions in coastal wetlands of two different
watersheds can be field tested using a statistically valid field sample of coastal wetland soil and water
chemistry in those two watersheds, and then could further be tested as an indicator by field validating the
relative proximity of agricultural land to those wetlands throughout each of the watersheds.

The field-based validation of the landscape metrics/indicators is a vital (often neglected) step that requires
a statistically sound methodology prior to entering the field to conduct sampling. A typical way of
determining  if a landscape metric/indicator is  sensitive is to hold it to a predetermined standard of
acceptability (e.g., for a linear regression or ANOVA, a significance level of a = 0.05), but this standard
is not always the same for every metric, geography, ecosystem, and relevant audience. This step relies on
the a priori knowledge  and expertise of the research team and is a standard method for designing a
hypothesis test. Thus, a critical  analysis step is for the research team to agree on the level of sensitivity
that is required to satisfy the various research  or policy goals of the project, prior to the commencement of
field validation; however, this method is not the preferred methodology (for the reasons outlined above).
The sensitivity of a landscape metric can also  be assessed by comparing the results and distribution of the
metric with the results of other  studies and is insufficient for fully developing a landscape indicator and
should be avoided if possible.


Availability  of Complementary Research

The Great Lakes Consortium, U.S. EPA, and the members of SOLEC have several interests in the
investment of additional resources for the assessment, restoration, and understanding of the processes of
coastal wetlands of the Great Lakes. Thus, these groups sponsor complementary research that involves the
collection and processing of a tremendous amount of remote sensing and GIS data. Each of these groups
also conducts detailed field studies at a variety of locations throughout the Great Lakes Basin. Each of the
groups compiles much of these  data at the end of each project so that cross-site comparisons can be made,
and the assessment of the Great Lakes Basin can proceed efficiently. A basinwide examination of coastal
wetlands using remote sensing techniques is recognized as a common goal of these groups. Thus, the
integration of sampling and analytical protocols and benchmarks for implementing an effective binational
and basinwide monitoring program, which is capable  of tracking and assessing the existing status and
projected integrity of Great Lakes coastal wetlands, is warranted. Collaborations between the members of
these  groups are overlapping and offer many opportunities for complimentary research that, individually,
may be quite different. Complementary work  under the guidance of the Consortium includes the
development of a monitoring database, implementing a monitoring plan, and coordinating implementation
with Consortium member organizations (Consortium, 2004a). Thus, a key step for a landscape ecology
research team is to assess the present and past studies of Great Lakes coastal wetlands so they can avoid
duplication of data acquisition and processing, and to build upon the work of prior studies. Presently,
assessments  of coastal wetlands throughout the entire Great Lakes Basin are being conducted by the
contributors  to this report (i.e., U.S. EPA's Office of Research and  Development, U.S. EPA's Great Lakes
National  Program Office, and the Great Lakes Coastal Wetland Consortium). Other similar research is
being conducted by the Great Lakes Environmental Indicators Project, which is a multiagency effort
funded by the U.S. EPA's STAR Program (http://glei.nrri.umn.edu/default/default.htm).
                                                                                             27

-------
Data Synthesis and Presentation Techniques

Inferring Ecological Condition

A landscape ecological assessment is a determination of the condition of an area with regard to specific
ecosystems and their surroundings. This may involve the general summary of conditions, a determination
of suitability of habitat for specific plants or animals, a determination of the health risks for humans (e.g.,
water quality), or the determination of vulnerability for specific plants and animals (i.e., the ecological
vulnerability). Such determinations require a basis of comparison (a benchmark), which might be based
on the least-disturbed condition that is known or is desired for the ecosystem. The condition of the
assessment area, or a portion therein, can be compared to the benchmark condition (sometimes called a
"reference condition") to establish specific criteria against which proposals for change or modifications
might be presented.  Although past impairments may preclude restoration of any given ecosystem to
natural conditions, the perceived natural condition must be understood in order to define the target
condition and guide ecosystem improvement. That is, for coastal wetlands in the Ohio coastal area (for
example) it is impossible to find wetlands that are currently in the condition that they might have been
found in the early-1800s (i.e., pristine), but this is not to say that natural wetland conditions that  may be
desirable, but are not currently present in the landscape, cannot be used as  a reference condition to
compare to the current conditions found throughout the landscape. Thus, reference conditions are
frequently thought of as the "least impacted" area or conditions for a specific geographic region.
Understanding specific impairments to physical, chemical, and biological conditions is a precursor to
determining appropriate improvements. Movement from any current condition toward a reference
condition would be considered an improvement; movement away from the reference condition might be
considered harm or degradation.


Habitat Suitability and Vulnerability

Habitat information about plants and wildlife species is frequently represented by scattered data  sets
collected during different seasons and years, and from different sites throughout the range of a species. A
GIS-based model of habitat suitability (i.e., based on the physiological and sociobiological requirements
of a species or taxa) and habitat vulnerability (i.e., potential for degradation) can present this broad
database in a formal, logical, and simplified manner. Habitat models are a formalized synthesis of
biological and habitat information and include many assumptions about the organization of the model
components. Thus, such models should be regarded as hypotheses of species-habitat relationships, and
not as a statement of proven cause and effect relationships, unless the metric model has been thoroughly
tested using a valid statistical design. Habitat models may have merit in planning wildlife habitat research
studies about a species, as well as providing an estimate of the relative suitability of habitat for that
species (Rogers and Allen, 1987; Lopez etal, 2003).

Data needs for developing  and using a GIS habitat suitability or  vulnerability model include bathymetric
and topographic maps, aerial photographs, categorized satellite imagery, surface water area, streamflow,
river stage, species-specific habitat requirements, historical precipitation, air or water temperature data,
and potential for future precipitation and temperature. Vulnerability can be assessed by comparing habitat
quality, availability, or distribution with historical and projected future conditions.
     28

-------
Water Quality and Hydrologic Impairment

Coastal wetlands of the Great Lakes have many of the same functions that all wetlands have, but their
unique position in the landscape makes them a particularly important ecosystem for intercepting,
transforming, and accumulating chemical constituents that flow from upland areas to the open water areas
of the lakes. As the runoff passes through and/or is stored, coastal wetlands often transform and retain
nutrients (e.g., nitrogen and phosphorus), some pollutants (e.g., pesticides or components of road runoff),
and reduce the amount of sediment that might otherwise be transported beyond the coastal areas to open
water areas.

Coastal wetlands in the Great Lakes may also function to ameliorate the erosional forces of waves,
seiches, and other hydrologic changes in upland areas of the Great Lakes Basin. Changes in the
hydroperiod of the lakes and coastal wetlands (that is, altered patterns of water levels and flows in and out
of the wetlands) can quickly lead to a change in the vegetated communities of wetlands, which can, in
turn, change the habitat structure of wetlands and potentially alter the flow of material in and out of the
wetlands. Thus, the geomorphology or the hydrodynamics of coastal wetlands can be used to infer
ecological conditions in the wetlands, primarily because of in situ research studies of processes and
results.

Although a major factor in the assessment of coastal wetland condition in the Great Lakes, hydrologic
alteration (i.e., impairments to the natural hydrologic regime) is not the sole factor controlling ecosystem
functions. Thus, hydrologic regime is a dominant factor that should be used when designing a landscape
ecological assessment of coastal wetlands because it is a master variable that drives variation in many
other components of the ecosystem, for example,  fish populations, vegetation composition, and nutrient
cycling (Richter et al, 2003). Because the linkages between hydrologic impairment and ecosystem
impairment are well established (Bunn and Arthington, 2002),  such linkages may be useful for inferring
coastal wetland condition derived from remote sensing and GIS data that often contain spatial and
temporal hydrologic information.


Effectively Completing and Conveying Ecological Assessments

A landscape ecological analysis can take many different forms, but may need to address very specific
needs and audiences. Thus, a cost-effective technique for conveying landscape ecological assessment
results is desirable and can be achieved by:

    1)  Selecting the minimum necessary metrics to address the basic questions of the research and/or
       regulatory goals.

    2) Determining the key "next steps" that might be taken if additional funding is forthcoming, and
       which metrics might be the preliminarily  assessed during the initial analyses stages of the project.

    3) Reviewing and synthesizing the ecological, remote sensing, geostatistical, and other theory bases
       that might be necessary to explain the assessment results.


The culmination of the landscape ecological assessment requires a decision about what the best format for
conveying the results of the study is, considering  the research and policy goals of the audience. U.S.
EPA's Office of Research and Development has developed the "Landscape Atlas" concept (Jones et al.,
1997; Lopez et al., 2003), which communicates the complex analyses of remote sensing, GIS, and field-
                                                                                            29

-------
based information to a variety of users. The breadth and complexity of landscape ecological information
may hinder some audience members when they are in need of immediate answers to their issues or in
need of immediate information to convey to local and regional stakeholders. A landscape atlas integrates
broad scale analysis results into a format that reduces the volume of data to a series of preselected maps,
with standardized legends. The landscape atlas format can thus offer a series of informative maps that
give the reader a general picture of the variety of ecological parameters across a common region, and
pinpointing specific areas of interest depending on the audience.

It is also possible to explain ecological endpoints at a broad scale with greater ease by grouping the maps
by common geographies or metric/indicator types. The  atlas format allows for looking at assessment
results among scales, and based on different important topics that relate to ecological vulnerability,
among different maps, and it offers a way for the reader to compare metrics in a way that is most useful
for particular needs (Lopez et al., 2003). The maps are designed to give the reader an idea of the spatial
distribution of ecological conditions  relative to specific environmental values, at multiple scales, and/or
during different historical periods.

A relatively recent advance in landscape atlases is the application of CD-based, digital video disk (DVD)-
based, and Internet-based decision support tools, which incorporate the above-described maps in a format
that is readily accessible to those using a personal computer with a CD drive, DVD drive, and an Internet
connection, respectively. The advantage of these enhanced modes of data access is enabling the user to
view large volumes of data, simulate analyses of the data, and download the data associated with maps so
that they can  perform their own analyses. Because data  sets for the entire Great Lakes Basin require a
tremendous amount of storage space and a tremendous amount of processing capability, it is preferable to
prepare all of the possible metric maps for an area, and then deliver them to the public in one of these
formats. As data become more uniform across the Great Lakes Basin or as specialized collaborations
develop, the use of Internet-based (e.g.,  Internet-based mapping  applications) decision support tools are
likely to become more practical. A demonstration of using the CD format in the Great Lakes Basin is
provided in Appendix A of this report, and will soon be incorporated on the U.S. EPA Web site
(http ://www. epa.gov/nerle sd 1 /land-sci/staff/lopez .htm).
     30

-------
                                        Chapter 3


                  Using Landscape Metrics and Indicators
                        in Great Lakes Coastal Wetlands


Additional metrics and information that could be used to address coastal wetland (and other ecosystem)
assessment topics in the Great Lakes are provided in this report as a CD browser (Appendix A).
Additional information and analyses of landscape metrics and landscape indicators are periodically
updated and can be accessed by visiting the following Internet URL: http://www.epa.gov/nerlesdl/land-
sci/wetlands .htm.


Study Area Description

The Great Lakes Basin (United States and Canada) was mapped using the landscape ecology approach
described in the previous chapters (Figure 13). Landscape ecology metrics were mapped and interpreted
among 8-digit Hydrologic Unit Codes in the United States and within hydrologic sub-subdivisions in
Canada. Because there is a narrow strip of area on the perimeter of the Great Lakes where coastal
wetlands exist, some landscape characteristics within this coastal strip are particularly important to
quantify within the strip. Consequently, three coastal regions were selected to report relevant landscape
metrics: (a) a 10-kilometer coastal region, most likely encompassing all of the coastal wetlands in the
basin, and a large portion of the inland landscape that may influence these coastal wetlands; (b) a 5-
kilometer coastal region, encompassing most all of the coastal wetlands in the basin, and a moderate
portion of the inland landscape that may influence these coastal wetlands within the basin; and (c) a 1-
kilometer coastal region, encompassing many,  but not all of the larger coastal wetlands in the basin, and a
minimal portion of the inland landscape that may influence these coastal wetlands. Although the 1-
kilometer coastal region may not entirely capture all of the costal wetlands within the basin, it is most
useful for inferring the potential for disturbance of some of the landscape metrics that describe land cover
that can directly affect wetlands (e.g., road density and agricultural land cover metrics). The 1-kilometer
coastal region is also included to provide information as per the recommendations of the State of the
Lakes Ecosystem Conference and U.S. EPA's Great Lakes National Program Office, which heretofore
have assessed the condition of the Great Lakes Basin within the 1-kilometer coastal region. Each of the
coastal regions where landscape metrics are reported is also divided among the different hydrologic units
of the Great Lakes Basin so that the calculations can be easily viewed and compared among them.
Because the relatively narrow coastal regions are indistinguishable at the broad scale, and difficult to
portray using a full-basin map (Figure 13), each of the metrics for coastal regions  (where applicable) is
reported by coloring the full hydrologic unit associated with that length of coastal area (see Chapter 3).

Thus, all maps  of coastal and full hydrologic unit metrics are directly comparable, but the user must pay
close attention to the legend to identify the scale of analysis, to which the map refers (Figure 14). Most of
the maps in Chapter 3 describe landscape metrics within the full hydrologic unit (metrics related to water
quality) and the 1-kilometer coastal region (metrics related to land cover). The metrics in the 1-kilometer
coastal region in Chapter 3 are thus directly comparable, but additional analyses within the 5-kilometer
and 10-kilometer coastal regions are available in Appendix A and may be useful for comparison among
scales of analyses.
                                                                                           31

-------
                     GLB Landscape Metrics
                        Orientation Map
                           Metrics within
                         hydrologic units &
                         1 km, 5 km, 10 km
                            of shorelines
Hydrologic Unit Types
   United States 8-digit HUC

   Canada Subsubdivision
0   100  200
 ^d	
 Kilometers
32

-------
    I 0.6-1.1
    11.8.2.9
     1) - S.»
     5.0-95
    19.5-623
     Hoi Available
GIB Landscape Metrics
  Hydrologic Units
      Quantlle
                        0  100  200

                         Kilometers
     I 0.02 - 3.9
     I 3.9- 9.1
     9.1-17.4
     U.4-42.5
     I 42.5-852
     Not Available
GIB landscape Metrics
  5 km of Shoreline
      Quantile
      Percent urban
                                      0    100    200
0  100 200

 Kilometers
                                10-2.6
                                12.6-7.2
                                 JJ-12.2
                                 12.2-31.7
                                131.7-86.0
           G1B Landscape Metrics
            10 km of Shoreline
                 Quantlle
                                                                                             (b)
10.59
15.9-11.6
 11.6-24.6
 24.6-51.2
151.2-99.3
 No1 Available
GIB Landscape Metrics
 1km of Shoreline
      Quantlle
     Percent urban
0  100 200
-J	1
 Kilometers
                         (c)                                                                  (d)


Figure 14. Regions within each of the (a) full hydrologic units, (b) 10-kilometer, (c) 5-kilometer, and (d) 1-kilometer
regions of the Great Lakes Basin (shown solely here for the United States) are mapped in Chapter 3 and Appendix A of
this report. Because the relatively narrow coastal regions are indistinguishable at the broad scale, and difficult to
portray using a full-basin map, each of the metrics in this report (where applicable) is reported by coloring the full
hydrologic unit associated with that length of coastal area per the legend color described for each metric.
                                                                                                                     33

-------
Ecological Vulnerability of Great Lakes Coastal Wetlands

Coastal wetlands of the Great Lakes Basin are vulnerable to loss or degradation as a result of the
interaction of naturally occurring conditions and human activities in the Great Lakes Basin (Table 3).
Wetlands that are degraded as a result of conditions within the Great Lakes Basin may continue to
function, but at a reduced functional level. Not all wetlands remain after these functional changes occur
with some coastal wetlands losing their ecological functions quickly, and some ceasing to function
altogether (i.e., wetland loss). Wetlands may flourish in conditions that fluctuate in their conditional state;
for example, some coastal wetlands depend on periodic changes between standing water and exposed soil,
which tends to increase the diversity of plants, which in turn supports wetland-independent animal
habitat. Thus, periodic wetland disturbances may allow for the formation of relatively small,
interconnected metapopulations, where gene flow between plant patches or wetlands maintains the
genetic diversity that might otherwise decline in relatively large inbred populations. When such
populations become unable to bridge the gaps between populations, at the advanced stages of patch
isolation, entire populations may become locally extinct (Opdam,  1990). Water-level fluctuations also
promote the interaction of aquatic and terrestrial ecosystems, and can result in higher quality habitat and
increased productivity.

Environmental changes that can directly influence coastal wetland condition (such as dredging, filling,
draining, and species invasion) originate in the wetland itself and are therefore easier to pinpoint than
indirect environmental changes. Direct environmental changes in coastal wetlands are often human-
induced, highly visible, and can result in rapid changes to wetlands. Indirect environmental changes are
often less pronounced, potentially causing changes in wetland function and vegetation communities over
a longer period of time. Indirect environmental changes are physically removed from a wetland, and thus
it may  be difficult to pinpoint the exact source of the environmental change. Indirect environmental
changes include urban and agricultural runoff. Indirect environmental changes are relatively difficult to
control, due to their diffuse and variable sources (Environment Canada, 2002). Human-induced
environmental change  factors described in this report are based on previously observed positive
correlations between ecosystem degradation and amount of land cover conversion during road
construction, road maintenance, and other human-activities (e.g., Connell and Slatyer, 1977; van der
Valk, 1981; Ehrenfeld, 1983; Johnston, 1989; Scott etal, 1993; Johnston, 1994; Poiani and Dixon, 1995;
Jenning, 1995; Wilcox, 1995; Ogutu, 1996; Stiling, 1996; Heggem etal., 2000; Lopez etal., 2002;  Lopez
and Fennessy,  2002).

The spatial configuration of coastal wetlands (i.e., size, shape, and interspersion within the larger
landscape) is an important consideration, since larger wetlands may be relatively more likely to persist in
the face of environmental changes. Wetlands of various sizes  also attract different species, and a range of
sizes may  increase the  diversity of habitat types across a broad area. For example, some birds (e.g.,  black
tern, Forster's tern and short-eared owl) may require a sufficiently large size before they will make use of
it for nesting (Environment Canada, 1998). Mitsch and Gosselink (2000) have described wetlands as
spatially and temporally dynamic habitats, and thus the boundaries of coastal wetlands could be affected
by the  combined geological and hydrological processes associated with erosion and deposition, changing
biological processes in the process. Wetland size  and proximity  metrics used in this report and Appendix
A are based on previously observed trends regarding the effects of patch size, patch shape, and the
interspersion of ecosystems within the broader landscape for specific taxa, in many different regions (e.g.,
MacArthur and Wilson,  1967; Simberloff and Wilson,  1970; Diamond, 1974; Forman etal., 1976; Pickett
and Thompson, 1978;  Soule etal., 1979; Hermy and Stieperaere, 1981; van der Valk, 1981; Simberloff
and Abele, 1982; McDonnell and Stiles, 1983; Harris, 1984; McDonnell, 1984; Moller and Rordam,
     34

-------
 1985; Brown and Dinsmore,  1986; Dzwonko and Loster, 1988; Gutzwiller and Anderson, 1992; Opdam
et al, 1993; Hamazaki, 1996; Kellman, 1996; Bastin and Thomas, 1999; Mclntyre and Wiens, 1999a;
Mclntyre and Wiens, 1999b;  Twedt and Loesch, 1999; Jones et al., 2000; Lopez et al., 2002; Lopez and
Fennessy, 2002).

 Table 3. Environmental conditions in the Great Lakes Basin and some of the potential affects upon coastal wetlands.
   GLB Environmental Condition
                  Potential Coastal Wetland Affect(s)
Adjacent urbanization
Change in magnitude and/or duration
and/or frequency of water levels

Change in wetland vegetation, e.g.,
change in proportion of wetland open
water and emergent vegetation

Chemical/oil spill
Peak flows of runoff from paved urban areas may rapidly pulse through wetland
and increase the amount of metals, oils, salts, or other contaminants into, or
flowing out of, wetlands to open lake areas

Changed competitive or successional processes that may result in changed
species diversity in fish, amphibian, bird, plant, or other community structure

Loss of optimum habitat for some species of fish, waterfowl, and other marsh birds
Death of wetland organisms
Dredging
Deepening water and removal of sediments can result in loss of wetland habitat
Early ice breakup, early peaks in spring
runoff, change in the timing of stream
flow, and increased intensity of rainstorms

Habitat loss and fragmentation
Mechanical clearing of wetland vegetation
Over-harvesting of resources
Fewer viable breeding sites, especially for amphibians, migratory shorebirds, and
waterfowl; northern migratory species (e.g., Canada geese) winter further north;
increased flooding frequency in coastal areas

Decrease in the available aquatic habitat for organisms, especially affecting
species with limited dispersal capabilities (e.g., amphibians and mollusks)

Creation of impassable areas for some species, thus isolating populations and
increasing likelihood of extirpation

Depletion of recreationally or commercially valuable species
Reduced summer water levels
                                       Reduction in the total area of wetlands, resulting in poorer water quality and less
                                       habitat for wildlife
Removal of tree cover and shoreline
vegetation

Runoff and pollutants from agricultural
areas, sewage treatment outflows,
stormwater outputs, urbanized areas,
industrial outfalls, and other sources in
watershed
Increased runoff into wetland from adjacent land
Increased loading of nutrients, sediments, and toxic chemicals in downstream
wetlands; reduced water clarity
Shoreline modification; wetland filling or
drainage

Species invasion and spread (e.g., carp,
zebra mussel, common reed, purple
loosestrife)
Storms and seiches
Physical destruction or reduction in protection of coastal regions to erosion
Feeding, spawning, and nesting behavior of animals may interfere with plant
photosynthesis/growth; nonnative animals may prey upon native animal species or
outcompete them for food and habitat; plants may not provide suitable forage,
nesting, reproduction

Damage to vegetation due to high winds and waves
                                                                                                              35

-------
The spatial configuration of coastal wetlands within the larger landscape is also important because
wetland vulnerability (i.e., the risk of wetland loss or degradation) can be initially evaluated by
investigating these spatial interrelationships. Measurement of the spatial configuration of coastal wetland
size, shape, inter-wetland spacing, proximity to non-wetland land cover, and variations of these metrics
are important because these metrics may foretell the likelihood that a particular wetland will rebound after
a disturbance. That is, an a priori understanding of wetland ecosystem characteristics, and specific
landscape metrics can be used to address ecological endpoints that predict habitat degradation as a result
of wetland destruction, fragmentation, or degradation. Accordingly, we begin this overview by describing
wetland area, followed by a sample of the other wetland metrics that are described in detail in Appendix
A.

Areal Extent of Great Lakes Coastal Wetlands

The extent of coastal wetlands (i.e., wetlands within 1-kilometer of the coastline of the Great Lakes) is
shown in Figure 15.  Relatively large coastal wetlands may extend further inland than 1-kilometer. Thus
they are mapped within a 5-kilometer coastal region in Appendix A; however, this may include non-
coastal areas too. The differences between coastal wetland areal coverage among watersheds and coastal
region areas can be used to interpret other metrics and to prioritize all of the Great Lakes coastal areas for
more detailed analyses.

Prior to European settlement, the extent of wetlands in the Great Lakes Basin spanned large areas from
the western edge of Lake Erie, across Ohio and Indiana, and covering the southern portion of the Province
of Ontario. It is estimated that two-thirds of Great Lakes coastal wetlands have been lost since European
settlement. Many of these areas have been drained or reclaimed for land development, farmland, harbor
facilities, and urban  expansion (Environment Canada, 2002). Other substantial wetland losses inland from
      I 0-4.2
      | 4.2-9.7
       9.7- 19.6
       19.6-33.3
      | 33.3-91.3
       Not Available
GIB landscape Metrics
 1km of Shoreline
     Quantlle
    Percent wetland
-1.2
-3.3
-7.3
-11.8
8-28.3
 . -i i LI hi-
de Landscape Metrics
 1 km of Shoreline
     Quantile
    Percent wetland
                         (a)
                                                       (b)
  Figure 15. Areal extent of coastal wetlands is mapped here as percent of 1-kilometer coastal region among coastal
  watersheds in the United States (a) and Canada (b). Percent coastal wetland is calculated by dividing the number of
  wetland land cover cells in the coastal region of each watershed (i.e., the reporting unit) by the total number of land
  cover cells in the reporting unit minus those cells classified as water. This measurement has potential for measuring
  and comparing wetland contribution among watersheds and may be used to indicate potential for wetland removal
  or reduction in the amount of pollutants entering the Great Lakes. The relative extent of coastal wetlands may also
  be developed into a quantitative indicator of habitat for a wide variety of plant and animal species.
     36

-------
the coast of the Great Lakes may contribute to the degradation of coastal wetlands as a result of sub-
urbanization, dam construction, stream alteration, and the construction of flood control structures that
alter the hydrology of contributing watersheds (Cox and Cintron, 1997).

Between the 1780s and the 1980s, the largest reductions of coastal wetlands occurred in Ohio (U.S. EPA
2001b). Urban development along the shores of the Great Lakes generally reflects the history of human
decision-making processes that necessitated safe  and efficient harbors for the distribution of natural
resources, such as timber and mineral ores. As a result of these decisions, the areal extent of coastal
wetlands has been dramatically reduced by the conversion to, and to some extent by the  indirect effects
of, urban and agricultural land use (U.S. EPA, 2002a).

Inter-Wetland Spacing and Landscape Integration

Interconnected wetland patches function as a network (e.g., within a watershed or migratory bird flyway),
and have the cumulative  functional capability of all the individual wetlands. A collection of wetlands in
the landscape may be particularly important for providing a vital ecological unit for some animals, while
other animals may require a mixture  of wetland and upland areas for different portions of their life cycle
or their daily activities (e.g., a species that reproduces in wetlands and forages in upland areas). The
absence of such wetland  complexes or integrated upland and wetland conditions may completely interrupt
or degrade the  reproduction rates, survival rates, and overall fitness of some plant and animal species.

Fragmentation of the landscape may  result in the  isolation of coastal wetlands, with the remnants of the
formerly larger interconnected wetland complexes being replaced by less heterogeneous landscapes that
are dominated by either agricultural land, urban or rural human habitations, and industrial land. Such
conversions of wetland to other land  cover types  may reduce the functional capability of coastal wetlands
and may have also increased the likelihood that the remaining wetlands are further affected by the new
land cover type (Tiner et al, 2002). Thus, as the general concept of ecosystem integrity describes, the
capability of coastal wetlands to  continue to function and provide ecological services to the residents of
the Great Lakes (e.g., improving and maintaining clean water; providing critical habitat for plants and
animals; and shoreline stabilization and protection) is dependent upon the effects of the surrounding
landscape.

Wetland interconnectivity is one way of measuring the fragmentation of coastal wetlands in Great Lakes
coastal regions (Figure 16). A standard and uniform method for measuring wetland interconnectivity in
the coastal region (e.g., within 1-kilometers of the shoreline) is to determine the probability of wetland
area cell having a neighboring wetland, using a "moving window" over a GIS data set (i.e., a 9 pixel x 9
pixel area in Figure  16).  Thus, the boundaries between all pixel pairs, where at least one pixel is wetland,
were examined in the moving window. The interconnectivity metric is the number of boundaries where
both pixels are wetland, divided  by the total number of wetland boundaries (regardless of neighbor land
cover type). This metric gives a measure of how well the wetland is connected within the window sample
area, with high values being better connected than low values.

The  relative percentage of "perforated" wetland is another measurement of ecosystem fragmentation
(Turner et al., 2001), and is calculated here by using a moving 270-meter-square window (i.e., 9 pixel x 9
pixel) across the GIS land cover data set (Figure  17). When the percent wetland in the window is greater
                                                                                             37

-------
    10-35
    I 35 - 53
     53- 66
     66-75
    I 75-as
     Not Available
GIB Landscape Metrics
 1 km of Shoreline
      Quantile
 Mean wetland connectivity
(Probability ol neigh boring wellandl
                             (a)
| 0-56
| 56 - 65
 65 - 69
 69-78
| 78 - 92
 Not AuatlaMe
GLB Landscape Metrics
  1 km of Shoreline
      Quantile
  Mean wetland connectivity
11' i ,j I.,,JL< .11: / ol neighboring wetland)
0  100 200

 Kilometers
                                                                              (b)
 Figure 16. Mean wetland connectivity in a 1-kilometer coastal region of the Great Lakes Basin (probability of
 neighboring wetland), which is the mean (for a reporting unit) probability of a wetland cell having a
 neighboring wetland cell, calculated using a moving 270-meter-square window (9 pixels x 9 pixels) across the
 GIS land cover data set. Because these analyses use two differing land cover data sets, results for (a) the U.S.
 and (b) Canada may not be directly comparable.
I 0.0000 - 0.007
5 0.007 - O.6
 0.6-2.1
 2.1-5.8
| 5.8-33.0
 Not Available
                GIB Landscape Metrics
                  1km of Shoreline
                      Quantile
                  Percent perforated wetland
                        0  100 ZOO
                        i .U   I
                         KUometars
| 0.0000
I 0.0001 - 0.015
 0.015 - 0.19
 0.18-0.45
| O.45-3.B3
 Not Available
GLB Landscape Metrics
 1km of Shoreline
      Quantile
 Percent performed wetland
0   100 200

Kilometers
                            (a)
                                                                       (b)
Figure 17. Percentage of perforated wetland, in a 1-kilometer coastal region of the Great Lakes Basin, is calculated
using a moving 270-meter-square window (9 pixels x 9 pixels) across the land cover, and generally indicates if center
upland area(s) are present in a wetland. Because these analyses use two differing land cover data sets, results for (a)
the U.S. and (b) Canada may not be directly comparable.
   38

-------
than 60%, and greater than the window's mean wetland connectivity value (Figure 16), the wetland cell in
the center of the window is categorized as perforated. The number of perforated wetland cells in the
reporting unit is then divided by the reporting unit's total land area (i.e., the total number of cells in the
reporting unit boundary minus those cells classified as water) to derive the percentage of perforated
wetland. Perforated wetland  generally consists of a patch of wetland with center upland area(s), such as
would occur if small clearing(s) were made within a patch of wetland, or if an area of wetland contained
an interior upland region. Perforated wetlands may be fragmented in this fashion to such an extent that
they do not provide suitable  interior habitat for some wetland species. However, the interspersion of
upland and wetland conditions in perforated wetlands may provide suitable habitat for
some specialized plants and animals that require fluctuating wetland conditions and isolated upland areas.
Thus, high perforation values may be considered as detrimental for some ecological functions and species
and advantageous for others.

Fragmentation of coastal wetlands may lead to increased inter-wetland distances because of the increases
in the incidence and extent of other land cover types developing in the intervening spaces (e.g., farm land
or human habitations). Accordingly, mean distance to closest like-type wetland (Figure 18) is an
important metric because it may indicate the likelihood of nearby similar wetland habitat (e.g.,
neighboring emergent-emergent wetlands for migratory bird resting and foraging or neighboring  forest-
forest wetlands for migratory song bird resting and foraging). The mean (for a reporting unit) minimum
distance to closest wetland patch,  e.g., the distance from each wetland patch to its nearest neighboring
wetland patch, should be measured from one patch edge to another patch edge, and may consist of
multiple measures (e.g., mean of three nearest patches).  This metric is useful in determining relative
wetland habitat suitability at scales that are ecologically meaningful for specific plant and animal taxa,
and demonstrates the importance of establishing the ecological endpoint(s) of interest prior to full
development of this indicator.
       Not Available
GIB landscape Metrics
 1 km of Shoreline
     Quantile
    Mean distance to
  closest like-typo wetland
0  100 200

Kilometers
                                                          IBB
                                                          250-
                                                          110-
                                                         I 414-
                                                          Nol AvalFaMe
GU landscape Metrics
 1km of Shoreline
     Quantile
    Mean distance to
  closest I Ike-type wetland
                        (a)                                                 (b)
 Figure 18. Mean distance to closest like-type wetland, in a 1-kilometer coastal region of the Great Lakes Basin, is the
 mean minimum distance to closest wetland patch, for the 1-kilometer shore area, within each hydrologic unit.
 Distances were measured from edge to edge and are reported in meters. This metric is useful in determining relative
 wetland habitat suitability at scales that are ecologically meaningful for specific plant and animal taxa. Because these
 analyses use two differing land cover data sets, results for (a) the U.S. and (b) Canada may not be directly
 comparable.
                                                                                                  39

-------
 The Shannon-Wiener index and Simpson's Index are two different ways of measuring the diversity and
 distribution of land cover types within a specific area of the landscape. The Shannon-Wiener Index of
 land cover type diversity (Figure 19) is calculated as:
                                m
                                     >« *  In P,-
                                                 , where P, = the proportion of land cover type i.
    •4-

      I 0.4-1.6
      | 1.6-1.9
      1.9-2.1
      2-1-2.2
      | 2.2-2.4
      Not Available
GIB landscape Mettles
 1 km of Shoreline
     Quantile
   Land cover diversity
 (Shannon • Weiner index)
                                                         Not Available
GU landscape Metrics
 1 km of Shoreline
     Quantile
   Land cover diversity
  (Shannon • Weiner index)
                         (a)
                                                         (b)
Figure 19. The Shannon-Wiener Index, in a 1-kilometer coastal region of the Great Lakes Basin, is one of several ways
to measure the diversity of land cover types within a specific area of the landscape. The Shannon-Wiener Index value
increases as the number of land cover types within the reporting  unit increases. Because these analyses use two
differing land cover data sets, results for (a) the U.S. and (b) Canada may not be directly comparable.
 Shannon-Wiener Index values increase as the number of land-cover types within the reporting unit
 increases, with higher value coastal areas having more diverse land cover (i.e., more diversity) than areas
 with lower values. Because higher Shannon-Wiener diversity in coastal areas does not always indicate
 greater opportunities for variety of species (i.e., land cover diversity includes agriculture and urban),
 Simpson's Index (Figure 20) can be used to better describe the distribution of the land cover in a coastal
 region. Simpson's Index is a quantitative measure of the evenness of the distribution of land-cover classes
 and is most sensitive to the presence of common land-cover types within a reporting unit. Simpson's
 Index values range from 0 to 1, with 1 representing perfect evenness of all land cover types within a
 reporting unit. Simpson's Index is calculated as:

                                         m
                                        i=l      , where P, = the proportion of land cover type i.
      40

-------
       | 0.09-0.1
       | 0.13-0.1
       0,15-0.1
       Q.17- 0.2
       | 0.25 -0.7
       Not A'
GIB Landscape Metrics
 1km of Shoreline
     Quantlle
   Land cover diversity
    {Simpson Index)
| 0.17 -
| 0.23 *
 0.31 •
 0.38 •
| 0.42 -
 Not At
GIB landscape Metrics
 1 km of Shoreline
     Quantlle
   Land cover diversity
    (Simpson index)
                        (a)                                               (b)

  Figure 20. Simpson's Index, in a 1-kilometer coastal region of the Great Lakes Basin, is a measure of the diversity
  of land-cover types within a specific area of the landscape. Simpson's Index is a measure of the evenness of the
  distribution of land-cover classes. Because these analyses use two differing land cover data sets, results for (a) the
  U.S. and (b) Canada may not be directly comparable.


Proximity  of Land Cover and Land  Use to Coastal Wetlands

The coastal region of the Great Lakes has been an attractive location for development during the history
of settlement and expansion of societies. The shorelines are a focus of human activities because they are
near water, which provides unique transportation  functions, resources for manufacturing, recreational
opportunities,  residential uses, and drinking water resources. The transportation services in combination
with the close  proximity to productive farmland, raw materials, and an ever-growing inland infrastructure
makes the coastal areas an unparalleled  area to economically exploit. Thus, there may be conflicts
between preserving the remaining coastal wetlands and developing these areas for additional commercial
and societal needs. Coastal wetland areas that are close to urbanization (Figure 21) or human population
centers  (Figure 22) may be sensitive natural areas and affected by human land use associated with urban
and suburban activities.

An example of the effects of coastal wetland disturbance is an increased expansion of invasive or
opportunistic plants into landscape gaps (i.e., within and between wetlands), which may be the result of
increased land-cover fragmentation (Forman, 1995). The patch dynamics (i.e., either increases or
decreases in extent) of invasive and opportunistic plant species (Lopez and Nash, manuscript in review) in
disturbed Great Lakes coastal areas may be facilitated by the extent and  intensity of wetland patch
disturbance that results from human fragmentation of the landscape, resulting in hydrologic alteration
(e.g., road construction). Because species-level assessments may not be possible using satellite, or other
coarse scale remote sensing data (i.e., spatial or spectral resolution data), it may be necessary to map
invasive or opportunistic species using finer scale remote sensing data (see Chapter 3, remote sensing data
types). Chapter 4 provides a specific example of how to implement a broad scale coastal wetland
assessment,  using a combination of hyperspectral and fine-scale airborne multispectral data,  GIS, and
detailed field-based sampling. This mapping approach is the preliminary step necessary to determine
                                                                                                41

-------
15.9*11.6
 ll.fi - 2-S.6
 24,6-51.2

 Nat Available
               GIB Landscape Metrics
                1 km of Shoreline
                    Quantlle
                   Percent urban
| 0.0 - O.2
| 0.2-2,1
 2.1 - 6,5
 6.5 - 10,7
I 10.7-72.1
GIB Landscape Metrics
 1km of Shoreline
     Quant lie
    Percent urban
                            0   100   200
                      (a)                                                (b)
 Figure 21. The percentage of urban land cover, in a 1-kilometer coastal region of the Great Lakes Basin, is calculated
 by dividing the number of urban land-cover cells in the reporting unit by the total number of land-cover cells in the
 reporting unit minus those cells classified as water (i.e., total land area). High amounts of urban land indicate
 substantial modification of natural vegetation cover and may affect the condition of wildlife habitat, soil erosion, and
 water quality in coastal areas. Because these analyses use two differing land cover data sets, results for (a) the U.S.
 and (b) Canada may not be directly comparable.

potential causal relationships between landscape disturbance (determined from landscape metrics describe
in this chapter) and the receptor variables, e.g., the influx and spread of invasive and opportunistic plants
in coastal wetlands.

Data about the land cover and land use that is in the vicinity or directly adjacent to coastal wetlands may
be important indicators of the level of disturbance within a wetland. For example, paved surfaces (e.g.,
roads; Figure 23) increase the impermeability (Figure 24) of land surfaces  and may increase the amount
of runoff to streams, lakes, and wetlands, and potentially increase the transport of road salts or other
chemicals from paved  surfaces (e.g., trace metals and hydrocarbons). Roads also fragment habitat and
may act as barriers to animal movement (e.g., amphibians or large mammals).

Land  use in a particular watershed may also have a significant influence on the flow of runoff and
sediments toward coastal areas, and may be indicative of the amount of runoff that is intercepted by
coastal (and other) wetlands. The capability of such wetlands to accumulate, transform, and/or store
pollutants that are transported in the runoff from the inland areas of the watershed is an important
mechanism for maintaining and improving the water quality of the Great Lakes. Wetlands that are
adjacent to other habitats and that provide connections between other habitats in the watershed are also
more  likely to maintain their normal hydrologic regime, which may moderate the amount of water,
sediment, and chemical constituents that are directly input into the open water areas of the lakes. Thus,
areas  that are relatively more developed and intensively used for agriculture may have increased rates of
runoff and sediment loading to the Great Lakes. However, if coastal wetlands, situated between upland
urban or agricultural areas, are present the runoff and sediment loading may be reduced. However,
wetlands in close proximity to urban or agricultural land (Figure 25) may be at greater risk of loss or
degradation as a result of hyper-eutrophication or pollution. Wetlands that are adjacent to urban land
cover (Figure 26) may also provide poor animal habitat relative to wetlands adjacent to natural land
cover, such as forests.
     42

-------
• 0.9-19
• 19-60
CD 60- 131
n 131 -354
• 354-6727
O Not Available
GIB landscape Metrics
1 km of Shoreline
Quantile
Population density
(individuals/km2)
0 100 200
Miles
0 100 200
Kilometers
Figure 22. Human population density (individuals/km2) approximated in the 1-kilometer coastal region of the
Great Lakes Basin. Population density is calculated by summing the number of people living in the reporting
unit and dividing by the reporting unit area. Where census units are not completely contained within the
reporting unit, population is apportioned by area. High population densities are generally well correlated with
high amounts of human land uses, especially urban and residential development. Large areas of development
often involve substantial modification of natural vegetation cover that may have substantial effects on wildlife
habitat, soil erosion, and water quality.
                                                                                                    43

-------
       • 0-1.8
       • 1.8-2.9
       02.9-4.3
           4.3-6.4
           6.4-13.9
           Not Available
GIB Landscape Metrics
  1 km of Shoreline
         Quantile
         Road density
        (km road/km2)
                                                                       100
    Miles
             200
0    100   200

 Kilometers
Figure 23. Road density (km road/km2) in a 1-kilometer coastal region of the Great Lakes Basin. The density of
roads is calculated by summing the length of roads and dividing by the area of the reporting unit. Values are
reported as length of all road types (i.e., freeways, highways, surface streets, rural routes, and other roadways)
per reporting unit area. High total road densities are generally well correlated with high human population
and urban development in the coastal region.
44

-------
       • 0
       • 0.1 - 6
       ne-13
       n 13-21
       • 21 - 53
          Not Available
GIB Landscape Metrics
  1 km of Shoreline
         Quantile
 Percent impervious surfaces
                                                                  100
   Miles
            200
0   100  200


 Kilometers
Figure 24. Percent impervious surfaces are mapped within a 1-kilometer coastal region of the Great Lakes
Basin (U.S. side). The percent of total impervious area is calculated using road density as the independent
variable in a linear regression model (May et aL, 1997).
                                                                                   45

-------
• 0.0-3.3
• 3.3-4.7
04.7-8.3
O 8.3- 11.9
• 11.9-35.1
O Not Available
GIB Landscape Metrics
1km of Shoreline
Quantile
Percent agriculture
adjacent to wetlands
0 100 200
Miles
0 100 200
Kilometers
 Figure 25. Percent agriculture adjacent to wetlands is mapped within a 1-kilometer coastal region of the
 Great Lakes Basin (U.S. side). The percentage of all agricultural land cover adjacent to wetlands is
 calculated by summing the total number of pasture and cropland land-cover cells directly adjacent to
 wetland land-cover cells in the reporting unit and dividing by wetland total area in the reporting unit.
46

-------

       • 0.0 - 2.5
       !•! 2.5 - 5.5
       LJ 5.5 - 9.9
       CH 9.9- 19.1
       • 19.1 - 65.1
       I  I Not Available
GLB Landscape Metrics
  1km of Shoreline
         Quantile
        Percent urban
     adjacent to wetlands
                                                                     100
   Miles
             200
0   100  200

 Kilometers
Figure 26. The percentage of urban land cover adjacent to wetlands is mapped within a 1-kilometer coastal region
of the Great Lakes Basin (U.S. side). Percent urban is calculated by summing the total number of urban land-
cover cells directly adjacent to wetland land-cover cells in the reporting unit and dividing by wetland total area in
the reporting unit.
                                                                                      47

-------
Water Quality Metrics Related to Coastal Wetlands of the Great Lakes
Basin

Wetlands play an integral role in the hydrologic cycle. They provide important ecosystem functions and
services that include flood storage during periods of high water and can act to improve the quality and
safety of water resources in the Great Lakes. Coastal (and other) wetlands in the Great Lakes watershed
can cleanse surface and ground water before it enters the shore waters (Lake Huron Center, 2000) by
accumulating and transforming contaminants that are contained within soil particles that travel in runoff
from upland areas toward the open waters. An increase in soil erosivity (Figure 27) or credibility (Figure
28) may indicate an increase in the amount of the runoff to streams, lakes, and wetlands that may contain
sediment and chemical constituents associated with sediment (e.g., phosphorus). Excessive amounts of
sediment, nutrients, or other chemicals in runoff may degrade surface water, ground water, wetlands, and
open water areas of the Great Lakes. Some watersheds in the Great Lakes have less sediment runoff than
others. An increase in soil permeability (Figure 29), i.e., a decrease in soil impermeability, may indicate a
decrease in the amount of runoff that may contain sediment, road salts, or other compounds, which
eventually flow from uplands, to streams, through wetlands, to the Great Lakes.

An increase in surface roughness (Figure 30), a function of land cover and soil physical characteristics,
may indicate a decrease in the amount of runoff (that can contain sediment, road salts, or other
compounds) to streams, lakes, and wetlands. In addition to the soil and general land-cover characteristics,
the presence of wetlands (by virtue of specialized vegetation and highly organic and clay soils) can have a
tremendous influence on the reduction of sediment runoff to the open water of the Great Lakes. Wetlands
slow down the movement of sediment, and thereby trap pollutants in the vegetation's tissues. Thus,
chemicals  like nitrogen and phosphorous (commonly associated with agricultural runoff) and pesticides
are taken up by the root systems of wetland vegetation, which incorporates them into plant tissue,
subsequently incorporating these constituents into the organic and clay soils, potentially for very long
periods of time (Environment Canada, 1995). In areas where surface roughness is low, this cleansing may
be critical  in preventing eutrophication, which is a major human health and nuisance issue, as well as a
threat to aquatic plants and animal species.
     48

-------
     • 64 - 78
     |   | 79 - 87
     |   88-98
     O 99 - 109
     • 110- 150
       1 Not Available
GLB Landscape Metrics
   Hydrologic Units
         Quantile
   Rainfall-derived erosivity
          (R factor)
                                                                  100
   Miles
            200
0   100  200

 Kilometers
Figure 27. Rainfall-derived erosivity (R factor) within the Great Lakes Basin (U.S. side). This metric is a
RUSLE weighted-average rainfall-derived erosivity metric, which is derived from a PRISM 2-km grid, and
is computed on a cell-by-cell area basis.
                                                                                   49

-------
         0.10-0.17
         0.18-0.22
         0.23 - 0.26
         0.27 - 0.31
         0.32 - 0.41
         Not Available
GIB Landscape Metrics
   Hydrologic Units
         Quantile
    Soil surface credibility
          (K factor)
100  200
                                                               Kilometers
Figure 28. Soil surface credibility (Kfactor) within the Great Lakes Basin (U.S. side). This metric is a
RUSLE weighted-average effect of inherent soil surface credibility (K factor), which is from STATSGO
data, and is computed on a cell-by-cell area basis.
50

-------
      • 0-1
      • 1-2
      02-4
         6-10
         Not Available
GLB Landscape Metrics
   Hydrologic Units
        Quantile
        Permeability
          (in / hr)
0   100  200

 Kilometers
Figure 29. Soil permeability (in./hr.) within the Great Lakes Basin (U.S. side). This metric is derived from a
STATSGO weighted-average soil permeability rate, measured in inches of water flow through soil layers per
hour.
                                                                                51

-------
• 0.16 - 0.22
• 0.23 - 0.25
O 0.26 - 0.28
| | 0.29 - 0.31
• 0.32 - 0.35
| | Not Available
GIB landscape Metrics
Hydrologic Units
Quantile
Roughness coefficient
0 100 200
Miles
0 100 200
Kilometers
Figure 30. Surface roughness coefficient within the Great Lakes Basin (U.S. side). This metric is a SEDMOD
weighted-average "Mannings' n" surface roughness coefficient, which may indicate the relative slowing of
runoff as a result of friction with the land surface.
 52

-------
                                       Chapter 4


      Using a Landscape Approach for Monitoring Invasive and
   Opportunistic  Plant Species  in Great Lakes  Coastal Wetlands

This is a case study describing in detail the application of the landscape ecological approach to map
invasive and opportunistic plant species, using common reed (Phragmites australis) as an example. In
combination with the broad-scale landscape metrics described in this report, an integrated landscape
ecology approach can be used to simultaneously conduct cost-effective monitoring  and determine the
potential effects of landscape disturbance on the influx and spread of species throughout the entire Great
Lakes Basin.


Invasive and Opportunistic Plant Species Impacts  on Coastal  Wetlands

Coastal wetlands and "invasive species" have been identified as important indicators of ecological
integrity within the Great Lakes (SOLEC, 2000). Although coastal wetlands of the Great Lakes have
potential for tremendous biological diversity and productivity (Figure 31), their plant communities are
extremely sensitive to impacts from local landscape conversion, which may directly or indirectly cause
the loss or the degradation of this diversity and productivity. The loss of biological  diversity in coastal
wetlands often coincides with the increase in presence and dominance of invasive (i.e., normative and
opportunistic) or native opportunistic plants (e.g., certain species of cattails or common reed).
   Figure 31. Some coastal marshes in the Great Lakes contain a relatively diverse vegetational community with high
   structural heterogeneity (both vertically and longitudinally), as shown in this Lake Erie diked coastal wetland
   (Lucas County, Ohio). This wetland (from background to foreground) contains row crop agricultural land (not
   visible in the distance), upland forest, forested wetland (far distance), emergent wetland (intermediate distance),
   floating leaved vegetation (near), and submersed aquatic vegetation (near). At the transitional region, between
   each vegetation type, there exists a mixture of each vegetation type.
                                                                                         53

-------
Combining Remote Sensing, Field-Based Measures,  and GIS to Map
Phragmites australis

Remote sensing technologies offer a unique capability for measuring the extent of invasive/opportunistic
plant species, over a large area. In this section, we demonstrate the use of ground-based vegetation
sampling and airborne remote-sensing data to map the presence and distribution of these plants within a
selected coastal wetland in western Lake Erie, which is a similar technique used to assess seven other
wetlands in the Great Lakes coastal zone (Lopez and Nash, manuscript in  review). These analyses along
the entire coastal area of the Great Lakes are currently being used to test for broad-scale relationships
between wetland disturbance (see Chapter 3) and invasive/opportunistic plant species in the 1-kilometer
coastal region of the Great Lakes. Maps of invasive/opportunistic plants on a wetland site basis can help
specific wetland managers throughout the Great Lakes region to target regions within a wetland for
control procedures (e.g., spraying of herbicide). Such maps could provide regional environmental
managers (e.g., EPA Region 5 Environmental Specialists) with a practical and cost-effective tool for
monitoring the progress of wetland rehabilitation and restoration projects.

Phragmites australis (Figure 32) is a flowering perennial monocot that is  native to North America but
often dominates the vegetation of coastal wetlands. Phragmites australis reproduce by  rhizome or stolon,
and produce copious amounts of seed that is predominantly sterile (Voss,  1972). In general, Phragmites
australis is a resource generalist that has a life history and physiological characteristics that enable it to
rapidly invade new areas and flourish under environmentally stressful conditions, where other plant
species cannot. Thus, Phragmites australis is often found to  dominate wetland plant communities, and its
spread in coastal wetlands may be a benchmark for observing the potential effects of landscape
disturbance with remote sensing because it forms large, relatively homogeneous patches that typically
reach sizes in the range from 1 to 50 hectares. The expanding populations of P. australis within Great
                        (a)
(b)
  Figure 32. (a) A St. Clair Delta coastal marsh (St. Clair County, Michigan) and (b) an eastern Lake Michigan
  coastal marsh (Oceana County, Michigan), each containing stands of P. australis. Patches of P. australis grow in
  many Great Lakes coastal wetlands. This dense and tall, aggressively growing opportunistic plant species may
  reach heights of up to 3.1 meters, stem densities of up to 52 stems per square meter, and up to 71 percent cover in
  the canopy (Lopez and Nash, manuscript in review), depending on the location and the environmental conditions of
  the wetland in which the plant is growing.
     54

-------
Lakes coastal wetlands may be the result of increased opportunities for the migration of individuals (or
genets) from small initial populations to newly opened gaps in the landscape.

Studies of genus Phragmites in other regions support a patch disturbance hypothesis that the level of
disturbance may be an important factor in the process. For example, die-back of Phragmites in relatively
undisturbed temperate European regions and expansion of Phragmites in European areas of climatic
extremes (van der Putten, 1997) suggest that periodic disturbance may increase the rate and extent of
expansion, such as has occurred in some coastal areas of the Great Lakes. Periodic stress may actually
allow for the formation of relatively small, interconnected metapopulations, where gene flow between
patches maintains the genetic diversity that might otherwise decline (i.e., in relatively large inbred
populations). When such populations become unable to bridge the gaps between populations at the
advanced stages of patch isolation, entire populations may become locally extinct (Opdam, 1990).


Case Study: Mapping P. austral is at the Pointe Mouillee Coastal Wetland
Complex

The purpose of this case study was to demonstrate the landscape ecological approach for determining the
presence and distribution of P. australis in an entire coastal area, with minimal field activities. Ground-
based wetland sampling was solely used to calibrate airborne hyperspectral data, to develop spectral
signatures of the native opportunistic plant species, and to accuracy assess GIS maps. Eight coastal
wetlands underwent this process, with case study results and techniques described at one of them (Pointe
Mouillee, Figure 33).

Typically, Phragmites communities form large monospecific "stands" that may predominate in wetland
plant communities, supplanting other plant taxa (Marks et al., 1994). Compared to other more
heterogeneous plant communities, Phragmites stands are less suitable as animal habitat and reduce the
overall biological diversity of wetlands. From a Great Lakes coastal wetland resource perspective,
Phragmites is difficult to manage because it is persistent, produces a large amount of biomass, propagates
easily, and is very difficult to control with mechanical or chemical techniques. A combined field and
remote-sensing-based approach was used to develop  a semi-automated detection and mapping technique
to support Phragmites monitoring and assessment  efforts. Relevant ecological field data provided an
important measurable link between airborne sensor data and information about the physical structure of
Phragmites stands, soil type, soil moisture content, and the presence and extent of associated plant taxa.

The 13 coastal wetland study sites were selected from a group of approximately 65 potential sites along
the coastal margins of western Lake Erie, Lake St. Clair, Lake Huron, and Lake Michigan (Figure 33).
Sites were selected using aerial photographs, topographical maps (l:24,000-scale), wetland inventory
maps, National Land Cover Data (NLCD), input from local wetland experts, and published accounts of
coastal wetland studies in the areas (Lyon, 1979; Herdendorf etal, 1986; Herdendorf, 1987; Stuckey,
1989; Lyon and Greene,  1992). Site selection criteria mandated that sites (i) generally spanned the
gradient of current landscape conditions along the  coastline of the lakes, (ii) were  emergent wetlands
(Cowardin et al., 1979), and (iii) included both wetlands that are open to lake processes and wetlands
protected from lake processes, e.g., diked wetlands or drowned river mouths (Keough et al., 1999). Sites
were selected so that proportions of adjacent LC generally varied among landscapes in the vicinity of the
13 sites. NLCD and aerial photographs indicated that site LC adjacent to all of the study sites included

active agriculture, old-field agriculture, urban areas, and forest, in varying amounts. Each of the  13
selected wetland sites was known a priori to contain  at least one of the targeted taxa of interest.
                                                                                            55

-------
 Figure 33. Thirteen wetland study sites in Ohio and Michigan coastal region, lettered A-M Sites were sampled
 during July-August 2001. Magnified view (inset image) of Pointe Mouillee wetland complex (Site E). White arrows
 indicate general location of two field-sampled Phragmites australis stands. Field-sampled site location legend: Pa =
 Phragmites australis; Ts = Typha spp.; Ls = Lythrumsalicaria; Nt = nontarget plant species; Gc = ground control
 point.


Remote Sensing

The PROBE-1™ is a hyperspectral scanner system with a rotating axe-head scan mirror that sequentially
generates cross-track scan lines on both sides of nadir to form a raster image cube. Incident radiation is
dispersed onto four 32-channel detector arrays. The single scene of PROBE-1™ data was visually
examined for missing or noisy bands. After the missing and noisy bands were removed, the resulting 104
bands of data were subjected to a minimum noise fraction (MNF) transformation to determine the
inherent dimensionality of image data, segregate noise in the data, and to reduce the computational
requirements for subsequent processing (Boardman and Kruse, 1994). The MNF transformations, as
modified from Green etal. (1988), are cascaded principal components transformations. The first
transformation, based on  an estimated noise covariance matrix, decorrelates and rescales the noise in the
data. This first step resulted in transformed data in which the noise had unit variance and no band-to-band
correlations. The second step was a standard principal components transformation of the "noise-
whitened" data. Then, the inherent dimensionality of the data was determined by examining the final
     56

-------
Eigen values and the associated images from the MNF transformations. The data space was then divided
into two parts, (i) one associated with large eigen values and coherent eigen images, and (ii) a
complementary part with near-unity eigen values and noise-dominated images. By using solely the
coherent portions, the noise is separated from the data, thus improving spectral processing results (RSI,
2001).

A supervised classification of the PROBE-1™ scene was then performed using the ENVI™ Spectral
Angle Mapper (SAM) algorithm, an automated processing technique for comparing image spectra to a
spectral library. Because the PROBE-1™ flights occurred three weeks after field sampling, there was a
possibility that trampling from the field crew could have altered the physical structure (thus, the
reflectance characteristics) ofPhragmites. For this reason, and due to inherent georeferencing
inaccuracies of the data within the two Phragmites stands, PROBE-1™ spectra were collected from a 9-
pixel (i.e., 3 pixel x 3 pixel) area, centered on the most homogeneous field-verified area within each
vegetation stand. The SAM algorithm was then used to determine the similarity between the spectra of
homogeneous Phragmites and every other pixel in the scene by calculating the spectral angle between
them (spectral angle threshold = 0.07 rad). SAM treats the spectra as vectors in an ^-dimensional space
equal to the number of bands (i.e., a 104-dimension space).
The SAM classification resulted in the detection of 18 image endmembers, each with different areas
mapped as potentially homogeneous regions ofPhragmites. Visual examination of the 18 endmembers
involved determining if mapped areas generally coincided with areas ofPhragmites observed in black and
white aerial photos (1999) and field data collections (2001). Additional validation of mapped areas of
Phragmites was also aided by using the ENVI™ Mixture Tuned Matched Filtering (MTMF) algorithms.
Visual interpretation of the MTMF "infeasibility values" (noise sigma units) versus "matched filtering
values"  (relative match to spectrum) further aided in the elimination of potential endmembers.  The
matched filtering values provide a means of estimating the relative degree of match to the Phragmites
patch reference spectrum and the approximate sub-pixel abundance. Correctly mapped pixels had a
matched filter score above the background distribution and a low infeasibility value. Pixels with a high
matched filter result and high infeasibility were "false positive" pixels that did not match the Phragmites
target. At the end of the endmember selection process, three Phragmites maps were created, one from the
northernmost stand and two from the southernmost stand (Figure 33). For the purposes of determining
adequately sized areas of mapped Phragmites, the three endmember maps were combined as a polygon
theme, with a minimum area threshold of 75 m2(i.e.,  3 pixels), using Arc View™.

Field Sampling

Vegetation was sampled at Pointe Mouillee on August 7-8, 2001. Prior to vegetation sampling, aerial
photographs (1999) were used, along with on-site assessments to locate large target species stands. Six
stands were sampled, including two stands of each target species and two nontarget vegetation stands, for
comparison to target-species stands (Figure 33). Digital video of each vegetation stand was recorded to
fully characterize the site and for reference during image processing. Each vegetation stand was mapped
by a field sketch, noting the general location and shape of vegetation stands, key landmarks that might be
recognizable in the remote sensor images, and other information about the site that might be useful when
trying to reconcile ground data with remotely sensed data. Transects within each of the stands and on the
perimeter of target-species stands were recorded using a real-time-corrected GPS for sampled target
species (Figure 34). Each of the two nontarget stands of vegetation was delineated with a minimum of
four GPS points, evenly spaced around the perimeter. Five GPS  ground control points were collected at
Pointe Mouillee, triangulating on sampled areas at that wetland.  GPS location points were recorded with
                                                                                            57

-------
either a single digital photograph (edge quadrats and nontarget vegetation stand) or multiple digital
photographs (ground control points) to provide several angles of each sample location. A written
description of each ground control point was recorded to assist in the georeferencing of the remote sensor
images.
Within each target-species stand, a nested quadrat sampling method was used to sample herbaceous
plants, shrubs, tree species, and other characteristics of target-species stands (Mueller-Dombois and
Ellenberg, 1974; Barbour, 1987). Depending on the size of the stands, from 12 to 20 (nested) 1.0 m2 and
3.0 m2 quadrats were evenly spaced along intersecting transects (Figure 35). The approximate percent
                       (a)
(b)
Figure 34. Field sampling activities were an important part of calibrating the hyperspectral data: (a) dense
Phragmites canopy and (b) dense Phragmites understory layer in the northernmost stand. The edges of the stand and
the internal transects were mapped using a real-time-corrected global positioning system.
cover and taxonomic identity of trees and shrubs within a 15-m radius was also recorded at each quadrat.
Depending on the size of the stand, a transect might either cross the entire stand or penetrate deeply into
the stand of vegetation. Thus, where appropriate, the terminal quadrat was placed outside of the target-
species stand perimeter to characterize the immediately adjacent LC. The perimeter of each stand and
identified corner of each 1-m2 quadrat was recorded with a GPS. All GPS locations were recorded with a
real-time-corrected (OmniSTAR USA, Inc., Houston, TX) GPS (Trimble Navigation Ltd., Sunnyvale,
CA), with a nominal spatial accuracy of 1.0 m. Non-spectral data collected along transects in the
vegetation canopy and understory (Figure 35) are listed in Table 2.

The northernmost Phragmites stand  sampled at Pointe Mouillee was bounded on the eastern edge by an
unpaved road, with two patches of trees/shrubs to the north (dogwood and willow) and to the south
(willow). The eastern edge of the stand was bounded by a mixture ofLythrum salicaria and Typha spp.
Soil in the Phragmites stand was dry and varied across the stand from clayey-sand, to sandy-clay, to a
mixture of gravel and sandy-clay near the road. Litter cover was a constant 100% across the sampled
stand. Nontarget plants in the understory included smartweed (Polygonum spp.), jewel weed (Impatiens
spp.), mint (Mentha spp.), Canada thistle (Cirsium arvense L.), and an unidentifiable grass. Cattail was
the sole additional plant species in the Phragmites canopy. Thus, the northernmost Phragmites stand was
relatively heterogeneous, with quadrat-4 located in the most homogeneous region of Phragmites, based
on the ecological characteristics of the stand (Figure 35).
     58

-------

*

«
an
is>


M
S
t>

tn
| ^
M

SDO
W
a

3




3—°-^? P---^-^,,.
; \ r1 ',

\ /
a-H3--Q— Q — Q— ti Eb a Q a • Q fa


s--s'\ r° \\
d "' - ' ^*^ ef^'—* ' ^3
,>,.,, ,,,.,.

,-~ D
ru— -a- D o-^ n D- -D— a -a— a
,!,.>. ,>,.>.
q D
\
\ \
o i'h- --a o -a- -a o 6 -G a -D o
IJJ4J6 IJJ4S6
_.o — .:• — o — o — o .0— <• — o- '

Transect 1 Quad No. | (Transect 2 Quad No.


Canopy Characteristics


Perircti c t\cr liv nitn-Ljr«L;l speciesi
-S Pcretfn c >vortk d lariivt spcwtcs1
v Pcrccn cntTtk d nnn-iargct spccio


Target Species Stem Characteristics
O Muanh yht(m)
-^- Mt-ari -d m diaiiK'lL-f (niiiit
-T^ lotal nt nhcrnt stems
Q Nunihc '("live stems
Nuinbf »('do;id stems


Understory Characteristics
• - Ptfrccni cm erdcjJ notv tu rjitrt specks
Pt't'ccnt u net ilwd luryu.'l spccius

Water, Liner, and Soil Characteristics
Pcrceni cmer liner
•<"_'•- PL-rcfiil L-mcrt-xpnisL-d ttmi.st MSI!
t_> JVrct'iit vn\cr cxp*^L.-il dr) Miit

O Mean Jcplli ni" open water (emj
<> Mean Jepili nl liilcr (crnli



     Figure 35. The heterogeneity of canopy, stem, understory, water, litter, and soil characteristics in Phragmites
     austratis stands was used to calibrate the PROBE-1™ data for the purpose of detecting P. amtratis at Pointe
     Mouillee (field data from the northernmost Phragmites stand sampled). The most, relatively, homogeneous area
     of Phragmites in the northernmost stand is in the vicinity of transect-1, quadrat-4. Pixels in the vicinity of
     transect-1, quadrat-4 were used in the Spectral Angle Mapper (supervised) classification of PROBE-1™
     reflectance data.

As described, the locations of the most homogeneous regions of Phragmites within sampled vegetation
stands were determined by examining field transect data to determine which had the greatest cover of
non-flowering live plants and greatest stem density. Phragmites is a facultative-wetland plant and usually
occurs in wetlands, but occasionally occurs in non-wetlands (Reed, 1988). Thus, it can grow in clayey
soil, varying from moist to dry substrate conditions. We did not have a. Phragmites field sample in a
moist-soil area at this site, but considering the great density of vegetation in the canopy and the high stem
density, spectral endmember maps of field samples were sufficient to detect relatively homogeneous areas
of Phragmites at a large number of locations.
                                                                                                  59

-------
GIS Mapping and Accuracy Assessment

SAM-supervised classification of the Pointe Mouillee PROBE-1™ image resulted in a vegetation map
indicating the locations of other relatively homogeneous Phragmites stands (Figure 36). Several of these
areas are located in the diked areas of the wetland complex, areas that are typically populated by large
stands of Phragmites in other Lake Erie wetlands.

A three-tiered approach to accuracy assessment of semi-automated vegetation maps at Pointe Mouillee
was followed and is ongoing at the remaining 12 sites. The accuracy assessment approach is, as follows:
(1) testing of target plant species presence/absence using a comparison of semi-automated vegetation
maps to recent stereo aerial photographs; (2) testing of target plant species presence/absence using
random field samples of the mapped areas; (3) testing of target plant species percent cover and structural
composition using random field samples of mapped areas.

At Pointe Mouillee, tier-1 accuracy assessment (prior to field validation sampling) compared vegetation
maps to 1:15 840-scale black and white stereo aerial photographs (September 1999) and field notes (May-
August 2001).  Tier-1 accuracy assessment results indicate that approximately 80% of the areas mapped as
Phragmites are located within true Phragmites stands. Field sampling to complete tier-2 and tier-3
accuracy assessment was performed in August 2002. Comparison of field samples with the semi-
automated vegetation maps of Phragmites resulted in a 91% user's accuracy («=86). Tier-2 accuracy
assessment ofTypha spp.  and Lythrum salicaria at the other wetland study sites, and tier-3 accuracy
assessment at Pointe Mouillee is ongoing.

Ongoing  Landscape Indicator Research  in  the Great Lakes

Disturbance  theory suggests that the intensity and duration of disturbance within an ecosystem is a key
factor in the  loss of ecological integrity (Connell and Slatyer, 1977; Rapport, 1990; Keddy, et al. 1993;
Opdam et al., 1993). One  of the potential mechanisms for the loss of ecological integrity maybe the
decline in biological diversity of an ecosystem, through the invasion of opportunistic species (Odum,
1985). The loss of plant biological diversity in coastal wetlands of the Great Lakes has been widely
described as a result of increased dominance of opportunistic plant species (e.g., Stuckey,  1989).

Research suggests that the influx and spread of such invasive and opportunistic plant species may be the
result of overall wetland ecosystem "stress" (Odum, 1985). Losses of biological diversity may be related
to changes in the frequency of landscape disturbance within coastal wetlands or on the edges of coastal
wetlands, such as fragmentation (Forman, 1995) that results from the construction of roads, the
conversion/proximity of wetlands to agriculture, or hydrologic alterations that occur in coastal wetlands
(e.g., ditching or diking). Attempts to control these plant species in Great Lakes coastal marshes (e.g., by
flooding, by drawing down water levels, by plowing vegetation, by spraying vegetation, or by mowing
vegetation) may bolster the population resiliency by increasing the proportion of "management resistant"
characteristics  in the plant populations (Diamond, 1974),  acting to further select for invasive genotypes at
managed wetland sites.

The potential drivers of this biological diversity loss and the landscape conditions in and around coastal
wetlands can be described using metrics, as demonstrated in Chapter 3. Some of the potential landscape-
scale ecological parameters that are correlated with the extent and pattern of invasive/opportunistic plant
species in coastal wetlands are currently being tested for substantive relationships, using the landscape
metrics described in this report and in the Appendix A. The landscape metrics described in the Appendix
     60

-------
A is an important step toward understanding the distribution of phenomena within coastal regions of the
Great Lakes and within the entire Great Lakes Basin. The browser in Appendix A is also designed to
present some key ecological metrics to the public and research communities at a landscape scale, which
can be used to familiarize oneself with environmental conditions, or to plan a variety of other ecological
analyses, respectively.
    Figure 36. Results of a Spectral Angle Mapper (supervised) classification, indicating likely areas of relatively
    homogeneous stands of Phragmites amtralis (solid blue), using PROBE-1™ data and field-based ecological data.
    Field-sampled patches of Phragmites are shown by black arrows. Areas of mapped Phragmites are overlaid on a
    natural-color image of Pointe Mouillee wetland complex (August 2001). Yellow "P" indicates the general location
    of known areas of Phragmites, validated with aerial photographs, field notes, and 2002 accuracy assessment data.
                                                                                                    61

-------
62

-------
                                         Glossary

Airborne hyperspectral data: A remote sensing data type that contains a relatively large number of
spectral bands (typically more than 20) and is acquired by a sensor that resides on an airplane, at either a
low or high altitude.

Airborne multispectral data: A remote sensing data type that contains a relatively small number of
spectral bands (typically less than 10) and is acquired by acquired by a sensor that resides on an airplane,
at either a low or high altitude.

ANOVA: Analysis of Variance test.

Anoxic: Condition which lack oxygen, typical of wetland soils.

C-CAP :  The U.S. National Atmospheric and Oceanographic Administration's Coastal Change and
Analysis  Program.

Decision support: A set of software and/or database applications that are intended to allow users to
search large amounts (e.g., in a clearinghouse) of information for specific reporting that can result in
making (e.g., environmental) management decisions.

GLNPO: U.S. EPA's Great Lakes National Program Office.

System: An assemblage of interrelated elements or components that comprise a unified whole. An
ecological system (ecosystem) is one type.

Ecological processes: The flow of energy and nutrients (including water) through an ecosystem.

Ecosystem: An interacting system consisting of groups of organisms and their nonliving or physical
environment, which are interrelated.

Ecosystem approach: An approach to perceiving, managing and otherwise living in an ecosystem that
recognizes the need to preserve the ecosystem's biochemical pathways upon which life within the
ecosystems depends (e.g., biological, social, economic, etc.).

Ecological indicator: A characteristic of the  environment that is measured to provide evidence of the
biological condition of a resource (Hunsaker  and Carpenter, 1990). Ecological indicators can be measured
at different levels, including organism, population, community, or ecosystem. The indicators in this
volume are measures of ecosystem level characteristics, at a broad scale (Jones et al, 1997).

Ecosystem integrity: The inherent capability of an ecosystem to organize (e.g., its structures, processes,
diversity) in the face of environmental change.

Endpoint: Describes a characteristic of an ecosystem of interest and should be an ecologically relevant
measurement. An endpoint can be any parameter, from a biochemical state to an ecological community's
functional condition.

EPA: The United States Environmental Protection Agency.
                                                                                            63

-------
Extirpation: The elimination or disappearance of a species or subspecies from a particular area, but not
from its entire range.

Foot: 0.305 meters.

GIS: Geographic Information System(s).

HGM: Hydrogeomorphic (methodology).

Hyper-eutrophication: The undesirable overgrowth of vegetation and algae as a result of high
concentrations of nutrients in wetlands; eutrophication greater than the typically higher levels of nutrients
found in wetland relative to lakes, streams, and rivers.

Indicator: In biology/ecology, any biological or ecological entity that characterizes the presence or
absence of specific environmental conditions, as demonstrated by statistical correlations of ecologically
meaningful relationships between the entity(ies)  and the environmental condition(s).

Kilometer: 0.62 miles.

Land cover: A biological and/or physical description of the Earth's surface. It is that which overlays or
currently covers the ground. This description enables various biophysical categories to be distinguished,
such as areas of vegetation (trees, bushes, fields, lawns), bare soil, hard surfaces (rocks, buildings), and
wet areas and bodies of water (watercourses, wetlands).

Landsat: The satellite-based U.S. National Aeronautics and Space Administration project that, in the late
1960s and early 1970s, endeavored to observe land features from space. The program has evolved by the
launching of a total of several satellites to date. Landsat imagery is used for a variety of Earth
observations.

Land use: A social or economic description of land cover. For example, an "urban" land cover
description can be described as a land use if particular information about the activities that occur in the
urban area can be discerned, such as residential, industrial, or commercial uses. It may  be possible to infer
land use from land cover, and the converse, but situations are often complicated, and the links to land use
are not always evident; unlike land cover, land use is difficult to infer from remote sensing imagery, or
over vast areas of the landscape. For example, it  is often difficult to decide  if grasslands are used or not
for agricultural purposes. Distinctions between land use and land cover and their definition have impacts
on the development of classification systems, data collection, and geographic information systems in
general.

Landscape: A complex concept encompassing several definitions. For the purposes of this report, a
landscape is an area containing a mosaic of land  cover "patches," i.e., distinct areas that can be defined or
mapped.

Landscape metrics: A measurement of a component or components (e.g., patches of forest) within the
landscape, which is used to characterize composition and spatial configuration of the component within
the landscape (e.g., forest size, fragmentation, proximity to other land cover types).
     64

-------
Landscape unit: A reference unit (usually of area) that is being measured, mapped, or described.

Landscape: The traits, patterns, and structure of a specific geographic area including its biological
composition, its physical environment, and its anthropogenic or social patterns.

Landscape characterization: The process of documenting the traits and patterns of the essential
elements of the landscape.

Landscape ecology: The study of the distribution patterns of communities and ecosystems, the ecological
processes that affect those patterns, and changes in pattern and process over time and space.

Landscape indicator: A measurement of the landscape, calculated from mapped or remotely sensed data,
used to describe some other spatial or temporal pattern(s) of land use or land cover across a geographic
area.

Liter: 1.057 quarts.

Meter: 3.28 feet.

Metric: Any measurement value.

Mile: 1.61 kilometers.

Model: A representation of reality used to simulate a process, understand a situation, predict an outcome,
or analyze a problem. A model is structured as a set of rules and procedures, including spatial modeling
tools that relate to locations on the Earth's surface (Jones et a/.,  1997).

MODIS: The satellite-based "Moderate Imaging Spectroradiometer." A project undertaken by the U.S.
National Aeronautics and Space Administration that endeavored to improve our understanding  of global
dynamics and processes occurring on the  land, in the oceans, and in the lower atmosphere.

ORD: U.S. EPA's Office of Research and Development.

Patch: A discrete  land cover unit; for example, a "patch of forest" is a specific 25-acre wooded area in
Hardin County, Ohio.

Perforated: The condition of a patch where gaps in the patch exist, such as a gap in a forest patch, which
may contain shrub, grass, or other non-forest land cover.

PRISM: Parameter-elevation Regressions on Independent Slopes Model.

RUSLE: Revised Universal Soil Loss Equation.

Satellite hyperspectral data:  A remote sensing data type that contains a relatively large number of
spectral bands  (typically more than 20) and is acquired by a sensor that resides on an Earth-orbiting
platform.
                                                                                            65

-------
Satellite multispectral data: A remote sensing data type that contains a relatively small number of
spectral bands (typically less than 10) and is acquired by a sensor that resides on an Earth-orbiting
platform.

Scale: The spatial or temporal dimension over which an object or process can be said to exist as in, for
example, the scale of forest habitat. This is an important factor to consider during landscape ecology
assessments because measured values often change with the scale of measurement. For example, coarse
scale maps have less detailed information than fine scale maps and thus exclude some information,
relative to fine scale maps.

Seiche:  Temporary displacement of water in a large lake owing to high winds or atmospheric pressure.
The short-term water-level oscillations that result from a seiche are functionally analogous to ocean tides.

Spatial  database: A collection of information that contains data on the phenomenon of interest, such as
forest condition or stream pollution, and the location of the phenomenon on the Earth's surface (Jones et
al, 1997).

Spatial  pattern: Generally, the way things are arranged on the Earth's surface, and thus on maps. For
example, the pattern of forest patches can be described by their number, size, shape, or proximity to other
entities. The spatial pattern exhibited by a map can be described in terms of its overall texture,
complexity, or by other landscape metrics.

STATSGO: State Soil Geographic (database).

Thematic map: A map that shows the spatial  distribution of one or more specific "data themes" (e.g.,
percentage of agriculture or human population).

U.S. EPA: United States Environmental Protection Agency.

Watershed: A region or area shown in a map as a bounded area that might be actually bounded (on the
ground) by ridge lines or other physical divides, which drain ultimately to a particular watercourse or
body of water (Jones et al, 1997).
     66

-------
                     Literature Cited and Resource Guide

Ball, H., J. Jalava, T. King, L. Maynard, B. Potter, and T. Pulfer. 2003. The Ontario Great Lakes Coastal
       Wetland Atlas.  Environment Canada and Ontario Ministry of Natural Resources, Canada.

Barbour, M.G., J.H. Burk, and W.D. Pitts. 1987. Terrestrial Plant Ecology. Benjamin/Cummings, Menlo
       Park, California.

Bastin, L. and C.D. Thomas.  1999. The distribution of plant species in urban vegetation fragments.
       Landscape Ecology.  14:493-507.

Blom, C.W., G.M. Bogemann, P. Laan, A.J.M. van der Sman, H.M. van der Steeg, and L.A. Voesenek.
       1990. Adaptations to flooding in plants from river areas. Aquatic Botany. 38:29-47.

Boardman, J.W. and F.A. Kruse. 1994. Automated spectral analysis: a geological example using AVIRIS
       data, north Grapevine Mountains, Nevada in Proceedings ofEPJM Tenth Thematic Conference
       on Geologic Remote Sensing. Environmental Research Institute of Michigan. Ann Arbor,
       Michigan, pp. 1-418.

Bromberg, S.M. 1990. Identifying ecological indicators: An environmental monitoring and assessment
       program.  Journal of the Air Pollution Control Association. 40:976-978.

Brown, D.G., E.A. Addink, J-D Duh, and M.A. Bowersox. 2004. Assessing Uncertainty in Spatial
       Landscape Metrics Derived from Remote Sensing Data in (R.S. Lunetta and J.G. Lyon, eds.)
       Remote Sensing and GIS Accuracy Assessment. CRC Press. Boca Raton, Florida.  368pp. Internet
       accessible at the following URL: http://www-
       personal .umich. edu/~danbrown/papers/acc_sym .pdf.

Brown, M. and J.J. Dinsmore. 1986. Implications of marsh size and isolation for marsh bird management.
       Journal of Wildlife Management. 50:392-397.

Bunn, S.E. and A.H. Arthington. 2002. Basic principles and ecological consequences of altered flow
       regimes for aquatic biodiversity. Environmental Management. 30:494-507.

Connell, J. H. and R. O. Slatyer. 1977. Mechanisms of succession in natural communities and their role in
       community stability and organization. American Naturalist.  111(982): 1119-1144.

Costanza, R. 1980. Embodied energy and economic evaluation. Science. 210:1219-1224.

Costlow, J.D., C.G. Boakout, and R. Monroe. 1960. The effect of salinity and temperature on larval
       development ofSesarma cinereum (Bosc.) reared in the laboratory. Biological Bulletin. 118:183-
       202.

Cowardin, L.M., V. Carter, F.C. Gollet, and E.T. LaRoe. 1979. Classification of Wetlands and Deepwater
       Habitats of the  United States. FWS/OBS-79/31. U.S. Fish and Wildlife Service. Washington,
       D.C. 103pp.
                                                                                         67

-------
Cox, K.W. and G. Cintron. 1997. The North American Region in Wetlands, Biodiversity and the Ramsar
       Convention in (A.J. Hails, ed.) Proceeding of the Ramsar Convention on Wetlands. Internet
       accessible at the following URL: http://www.ramsar.org/index_lib.htm.

Cushman, S.A., and K. McGarigal. 2004. Patterns in the species-environment relationship depend on both
       scale and choice of response variables. Oikos. 105:117-124.

Dahl, T.E. and C.E. Johnson. 1991. Status and Trends of Wetlands in the Conterminous United States,
       Mid-1970s to Mid-1980s. U.S. Department of the Interior, U.S. Fish and Wildlife Service.
       Washington, B.C. 28pp.

Dahl, T.E. 1990. Wetlands Losses in the United States, 1780s to 1980s. U.S. Department of the Interior,
       U.S. Fish and Wildlife Service. Washington, D.C. 21pp.

DeLaney, T.A. 1995. Benefits to Downstream Flood Attenuation and Water Quality as a Result of
       Constructed Wetlands in Agricultural Landscapes. White Paper. American Farmland Trust
       Center for Agriculture in the Environment, DeKalb, Illinois.

Diamond, J.M. 1974. Colonization of exploded volcanic islands by birds: The super tramp strategy.
       Science. 184:803-806.

Dzwonko, Z. and S. Loster. 1988. Species richness of small woodlands on the western Carpathian
       foothills. Vegetatio 76:15-27.

Environment Canada. 2002. Great Lakes Fact Sheet: Great Lakes Coastal Wetlands - Science and
       Conservation. Canadian Wildlife Service (Ontario Region). On-line Publications. Internet
       accessible at the following URL: http://www.on.ec.gc.ca/wildlife/wetlands/intro-e.cfm.

Environment Canada. 1998. Great Lakes Fact Sheet: How Much Habitat is Enough?  Minister of Public
       Works and Government Services, Canada. Catalogue No. En 40-222/8-1998E. Internet accessible
       at the following URL: http://www.on.ec.gc.ca/wildlife/factsheets/fs_habitat-e.html.

Environment Canada. 1995. Great Lakes Fact Sheet: Amphibians and Reptiles in Great Lakes  Wetlands:
       Threats and Conservation. Canadian Wildlife Service. Internet accessible at the following URL:
       http://www.on.ec.gc.ca/wildlife/factsheets/fs_amphibians-e.html.

Ehrenfeld, J.G. 1983. The effects of changes in land-use on swamps of the New Jersey Pine Barrens.
       Biological Conservation. 25:25 3 -275.

Ehrenfeld, J.G. and J.P. Schneider. 1991. Chamaecyparis thyoides wetlands and suburbanization: Effects
       on hydrology, water quality and plant community composition. Journal of Applied Ecology.
       28:467-490.

Forman, R.T.T. 1995. Land Mosaics. Cambridge, New York, New York.

Forman, R.T.T., A.E. Galli, and C.F. Leek. 1976. Forest size and avian diversity in New Jersey woodlots
       with some land use implications. Oecologia. 26:1-8.
     68

-------
GLCWC (Great Lakes Coastal Wetlands Consortium). 2004a. Great Lakes Coastal Wetlands:
       Consortium Fact Sheet. Internet accessible at the following URL:
       http: //www .glc. org/wetlands/background .html.

GLCWC (Great Lakes Coastal Wetlands Consortium). 2004b. Study Indicators and Metrics. Internet
       accessible at the following URL: http://www.glc.org/wetlands/.

GLIN (Great Lakes Information Network). 2004. The Great Lakes. Internet accessible at the following
       URL: http://www.great-lakes.net/lakes/.

GLNPO (Great Lakes National Program Office). 1999. Selection of Indicators for Great Lakes Basin
       Ecosystem Health in (P. Bertram, ed.) Version 3. State of the Lakes Ecosystem Conference.
       Internet accessible at the following URL: http://www.epa.gov/solec/index.html.

Gorham, E. 1987. The natural and anthropogenic acidification of peatlands in (T.C. Hutchinson and K.M.
       Meema, eds.) Effects of Atmospheric Pollutants on Forests, Wetlands, and Agricultural
       Ecosystems. Springer-Verlag, Berlin, Germany.

Government of Canada and GLNPO (Great Lakes National Program Office). 1995. The Great Lakes: An
       Environmental and Resource Book. Third edition. Government of Canada, Toronto, Ontario,
       Canada,  and U.S. Environmental Protection Agency, Great Lakes National Program Office.
       Chicago, Illinois. Internet accessible at the following URL:
       http://www.epa.gov/glnpo/atlas/index.html.

Green, R.H. 1979. Sampling Design and Statistical Methods for Environmental Biologists. J. Wiley and
       Sons. New York, New York.

Green, A. A., M. Berman, P. Switzer, and M.D. Craig. 1988. A transformation for ordering multispectral
       data in terms of image quality with implications for noise removal. IEEE Transactions on
       Geoscience and Remote Sensing. 26(l):65-74.

Gutzwiller, K.J. and S.H. Anderson. 1992. Interception of moving organisms; influences of patch shape,
       size, and orientation on community structure. Landscape Ecology. 6:293-303.

Harris, L.D. 1984. The Fragmented Forest: Island Biogeography Theory and the Preservation ofBiotic
       Diversity. University of Chicago Press, Chicago, Illinois.

Hamazaki, T. 1996. Effects of patch shape on the number of organisms. Landscape Ecology. 11:299-306.

Heggem, D.T., C.M. Edmonds, A.C. Neale, L. Bice, and K.B. Jones. 2000. An Ecological Assessment of
       the Louisiana Tensas River Basin. Environmental Monitoring and Assessment. 64:41-54.

Herdendorf, C.E. 1987. The Ecology of the Coastal Marshes of Western Lake Erie: A Community Profile.
       Biological Report 85(7.9). U.S. Fish and Wildlife Service, Washington, D.C. 171pp.

Herdendorf, C.E., C.N. Raphael, E. Jaworski, and W.G. Duffy. 1986. The Ecology of Lake St.  Clair
       Wetlands: A Community Profile. Biological Report 85(7.7). U.S. Fish and Wildlife Service,
       Washington, D.C. 187pp.
                                                                                           69

-------
Hermy, M. and H. Stieperaere. 1981. An indirect gradient analysis of the ecological relationships between
       ancient and recent riverine woodlands to the south of Bruges (Flanders, Belgium). Vegetation.
       44:43-49.

Howard, J.A. 1970. Aerial Photo-Ecology. American Elsevier, New York, New York.

Hunsaker, C. T. and D. E. Carpenter. 1990. Environmental Monitoring and Assessment Program -
       Ecological Indicators. EPA 600/3-90/060. U. S. Environmental Protection Agency, Research
       Triangle Park, North Carolina.

Jenning, M.D. 1995. Gap analysis today: A confluence of biology, ecology, and geography for
       management of biological resources. Wildlife Society Bulletin. 23:658-662.

Johnston, C.A. 1989. Human impacts to Minnesota wetlands. Journal of the Minnesota Academy of
       Science.  55:120-124.

Johnston, C.A. 1994. Cumulative impacts to wetlands. Wetlands. 14:49-55.

Jones, K.B.,  A.C. Neale, M.S. Nash, R.D. Van Remortel, J.D. Wickham, K.H. Riitters, and RV. O'Neill.
       2001. Predicting nutrient and sediment loadings to streams from landscape metrics: A multiple
       watershed study from the United States Mid-Atlantic Region. Landscape Ecology. 16(4):301-312.

Jones, K.B.,  A.C. Neale, M.S. Nash, K.H. Riitters, J.D. Wickham, RV. O'Neill, and RD. Van Remortel.
       2000. Landscape correlates of breeding bird richness across the United States Mid-Atlantic
       Region. Environmental Monitoring and Assessment. 63:159-174.

Jones, K.B.,  K.H. Riitters, J.D. Wickham, RD. Tankersley, Jr., R.V. O'Neill, D.J. Chaloud, E.R. Smith,
       and A.C. Neale. 1997. An Ecological Assessment of the United States Mid-Atlantic Region: A
       Landscape Atlas. EPA/600/R-97/130. U.S. Environmental Protection Agency, Office of Research
       and Development, National Exposure Research Laboratory, Washington, D.C.

Karr, J.R. and E.W. Chu. 1997. Biological Monitoring and Assessment: Using Multimetric Indexes
       Effectively. EPA/23 5/R97/001. University of Washington, Seattle.

Kellman, M. 1996. Redefining roles: plant community reorganization and species preservation in
       fragmented systems. Global Ecology and Biogeography Letters. 5:111-116.

Keough, J.R., T.A. Thompson, G.R. Guntenspergen, and D.A. Wilcox. 1999. Hydrogeomorphic factors
       and ecosystem response in coastal wetlands of the Great Lakes. Wetlands. 9(4):821-834.

Lake Huron  Centre. 2000. Critical Ecosystems along Lake Huron: Coastal Wetlands. Lake Huron  Centre
       for Coastal Conservation, Blyth, Ontario, Canada. Internet accessible at the following URL:
       http://www.lakehuron.on.ca/coastal/coastal-wetlands/critical-ecosystems.asp.
     70

-------
Leonard, S., C. Bishop, and A. Gendron. 2000. Amphibians and Reptiles in Great Lakes Wetlands:
       Threats and Conservation. Catalogue No. En 40-222/4-1996. Internet accessible at the following
       URL: http://www.on.ec.gc.ca/wildlife/factsheets/fs_amphibians-e.html.

Linsley, R.K.  and J.B. Francini. 1979. Water Resources Engineering. McGraw-Hill, New York, New
       York.

Lopez, R.D., D.T. Heggem, C.M. Edmonds, K.B. Jones, L.A. Bice, M. Hamilton, E. Evanson, C.L. Cross,
       and D.W. Ebert. 2003. A Landscape Atlas of Ecological Vulnerability: Arkansas' White River
       Watershed and the Mississippi Alluvial Valley Ecoregion. EPA/600/R-03/05. U.S. Environmental
       Protection Agency, Office of Research and Development, National Exposure Research
       Laboratory, Environmental Sciences Division, Las Vegas, Nevada. Internet accessible at the
       following URL: http://www.epa.gov/nerlesdl/land-sci/pdf/EPA600R03057_Aug03.pdf

Lopez, R.D., C.B. Davis, and M.S. Fennessy. 2002. Ecological relationships between landscape change
       and plant guilds in depressional wetlands. Landscape Ecology. 17:43-56.

Lopez, R.D. and M.S. Fennessy. 2002. Testing the floristic quality assessment index as an indicator of
       wetland condition. Ecological Applications. 12:487-497.

Luoto, M. 2000. Modeling of rare plant  species richness by landscape variable in an agricultural area in
       Finland. Plant Ecology: 149:157-168.

Lyon, J.G. 1979.  Remote sensing analyses of coastal wetland characteristics: The St. Clair Flats,
       Michigan. Proceedings of the Thirteenth International Symposium on Remote Sensing of
       Environment (April 23-27). Ann Arbor, Michigan, pp. 23-27.

Lyon, J.G. and R.D. Drobney.  1984. Lake level effects as measured from aerial photos. Journal of
       Surveying Engineering. 110(2) 103-111.

Lyon, J.G. and R.G. Greene. 1992. Use  of aerial photographs to measure the historical areal extent of
       Lake Erie coastal wetlands. Photogrammetric Engineering and Remote Sensing. 58:1355-1360.

Lyon, J.G., R.S. Lunetta, and Donald C. Williams. 1995. Airborne multispectral  scanner data for
       evaluating bottom sediment types and water depths of the St. Marys River, Michigan in (J.G.
       Lyon  and J. McCarthy, eds.) Wetland and Environmental Applications ofGIS.

MacArthur, R. and E.O. Wilson. 1967. The Theory of Island Biogeography. Princeton University Press,
       Princeton, New Jersey.

Marks, M., B. Lapin, and J. Randall. 1994. Phragmites australis (P. communis):  threats, management,
       and monitoring. Natural Areas Journal. 14:285-294.

McDonnell, M.J. 1984. Interactions between landscape elements:  Dispersal of bird disseminated plants in
       post-agricultural landscapes in (J. Brandt and P. Agger, eds.) Methodology in Landscape
       Ecological Research and Planning. International Association of Landscape Ecology. Roskilde,
       Denmark, pp. 47-58.
                                                                                           71

-------
McDonnell, M.J. and E.W. Stiles. 1983. The structural complexity of old field vegetation and the
       recruitment of bird-dispersed plant species. Oecologia. 56:109-116.

McGarigal, K. 2002. Landscape pattern metrics in (A.H. El-Shaarawi and W.W. Piegorsch, eds.)
       Encyclopedia ofEnvironmentrics (Volume 2). John Wiley & Sons, Sussex, England, pp. 1135-
       1142.

Mclntyre, N.E. and J.A. Wiens. 1999a. How does habitat patch size affect animal movement? An
       experiment with darkling beetles. Ecology. 80:2261-2270.

Mclntyre, N.E. and J.A. Wiens. 1999b. Interactions between habitat abundance and configuration:
       experimental validation of some predictions from percolation theory. Oikos. 86:129-137.

Miller, W. and F. Egler. 1950. Vegetation of the Wequetequock-Pawcatuck tidal marshes, Connecticut.
       Ecological Monographs.20:147-171.

Mitsch, W.J. and J.G. Gosselink. 2000. Wetlands (Third Edition). John Wiley & Sons, Ltd., New York,
       New York.

Mitsch, W.J. and S.E. Jorgensen. 2004. Ecological Engineering and Ecosystem Restoration. Wiley,
       Hoboken, New Jersey.

Moller, T.R.  and C.P. Rordam. 1985. Species numbers of vascular plants in relation to area, isolation and
       age of ponds in Denmark. Oikos. 45:8-16.

Mueller-Dombois, D. and H. Ellenberg. 1974. Aims and Methods of Vegetation Ecology. J. Wiley and
       Sons, London, United Kingdom. 547pp.

Odum, E.P. 1985. Trends expected in stressed ecosystems. Bioscience. 35(7):419-422.

Ogutu, Z.A.  1996.  Multivariate analysis of plant communities in the Narok district, Kenya: The influence
       of environmental factors and human disturbance. Vegetatio. 126:181-189.

O'Neill, R.V., C. Hunsaker, and D. Levine. 1992. Monitoring challenges and innovative ideas in (D.H.
       McKenzie, D.E. Hyatt, and V.J. McDonald, eds.) Ecological Indicators. Elsevier Applied
       Science, London, United Kingdom, pp. 1443-1460.

Opdam, P., R. V. Apeldoorn, A. Schotman, and J. Kalkhoven. 1993. Population responses to  landscape
       fragmentation in (C.C. Vos and P. Opdam, eds.) Landscape Ecology of a Stressed Environment.
       Chapman and Hall, London, United Kingdom.
Opdam, P. 1990. Understanding the ecology of populations in fragmented landscapes in: Transactions of
       the I
       390.
the 19th International Union of Game Biologists Congress. IUGB, Trondheim, Norway, pp. 381-
    72

-------
Pickett, S.T.A. and J.N. Thompson. 1978. Patch dynamics and the design of nature reserves. Biological
       Conservation. 13:27-37.

Poiani, K.A. and P.M. Dixon. 1995. Seed banks of Carolina bays: Potential contributions from
       surrounding landscape vegetation. American Midland Naturalist.

Prince, H.H., P.J. Padding, and R.W. Knapton. 1992. Waterfowl use of the Laurentian Great Lakes.
       Journal of Great Lakes Research. 18:673-699.

Rapport, D.J. 1990. Challenges in the detection and diagnosis of pathological change in aquatic
       ecosystems. Journal of Great Lakes Research. 16(4):609-618.

Reed, P.B., Jr. 1988. National List of Plant Species that Occur in Wetlands. Biological Report 88(26.3).
       U.S. Department of the Interior, U.S. Fish and Wildlife  Service, Washington, B.C. 99pp.

Richter, B.D., R. Mathews, D.L. Harrison, and R. Wigington. 2003. Ecologically sustainable water
       management: Managing river flows for ecological integrity. Ecological Applications.  13(1):206-
       224.

Riitters, K.H., RV. O'Neill, C.T. Hunsaker, J.D. Wickham, D.H. Yankee, S.P. Timmins, K.B. Jones, and
       B.L. Jackson.  1995. A factor analysis of landscape pattern and structure metrics. Landscape
       Ecology. 10:23-39.

Rogers, L.L. and A.W. Allen. 1987. Habitat Suitability Index Models: Black Bear,  Upper Great Lakes
       Region. Biological Report 82(10.144). U.S. Fish and Wildlife Service, Washington, D.C. Internet
       accessible at the following URL:
       http://www.bearstudy.org/Research/Publications/Habitat_Suitability_Black_Bear.pdf

Roth, N.E., J.D. Allan, and D.L.  Erickson. 1996. Landscape influences on stream biotic integrity assessed
       at multiple spatial scales. Landscape Ecology. 11:141-156.

RSI (Research Systems, Inc.). 2001. ENVI User's Guide. ENVI version 3.5, Research Systems
       Incorporated, Boulder, Colorado.

Schlesinger, W.H. 1997. Biogeochemistry: An Analysis of Global Change. San Diego, California.

Scott, J.M., F. Davis, B. Csuti, R. Noss, B. Butterfield, C. Groves, H. Anderson,  S. Caicco, F. D'erchia,
       F., Edwards, Jr., T.C., Ulliman, J., and R.G. Wright. 1993. Gap analysis: a geographical approach
       to protection of biological diversity. Wildlife Monographs. 123:1-41.

Simberloff, D. and L.G. Abele. 1982. Refuge design and island biogeographic theory: Effects of
       fragmentation. The American Naturalist. 120:41-50.

Simberloff, D. and E.O. Wilson. 1970.  Experimental zoogeography of islands. A two-year record of
       colonization. Ecology. 51:934-937.
                                                                                            73

-------
SOLEC. 2000. Selection of Indicators for Great Lakes Basin Ecosystem Health (Version 4). U.S.
       Environmental Protection Agency and Environment Canada. Internet accessible at the following
       URL: http://www.on.ec.gc.ca/solec/indicators2000-e.html.

Soule, M.E., B.A. Wilcox, and C. Holtby, C. 1979. Benign neglect: A model of faunal collapse in game
       reserves of East Africa. Biological Conservation. 15:259-272.

Stiling, P.D. 1996. Ecology: Theories and Applications (Second Edition). Prentice Hall, Upper Saddle
       River, New Jersey.

Stuckey, R.L. 1989.  Western Lake Erie Aquatic and Wetland Vascular-Plant Flora: Its Origin and
       Change in Lake Erie Estuarine Systems: Issues, Resources, Status, and Management. National
       Oceanographic and Atmospheric Administration, Washington, B.C.

Tiner, R.W., H.C. Bergquist, G.P. DeAlessio, and M.J. Starr. 2002. Geographically Isolated Wetlands: A
       Preliminary Assessment of their Characteristics and Status in Selected Areas of the  United States.
       U.S. Department of the Interior,  U.S. Fish and Wildlife Service, Northeast Region, Hadley,
       Massachusetts.

Turner, M.G., R.H. Gardner, and R.V. O'Neill. 2001. Landscape Ecology in Theory and Practice.
       Springer-Verlag, New York, New York.

Twedt, D.J. and C.R. Loesch. 1999.  Forest area and distribution in the Mississippi alluvial valley:
       implications from breeding bird  conservation. Journal ofBiogeography. 26:1215-1224.

U.S. EPA (U.S. Environmental  Protection Agency). 2004. Great Lakes Fact Sheet. U.S. Environmental
       Protection Agency, Great Lakes National Program Office, Chicago, Illinois. Internet accessible at
       the following URL: http://www.epa.gov/glnpo/factsheet.html.

U.S. EPA (U.S. Environmental  Protection Agency). 2003. Protecting Wetlands along the Great Lakes
       Shoreline. U.S. Environmental Protection Agency, Washington, B.C. Internet accessible at the
       following URL:  http://www.epa.gov/glnpo/ecopage/wetlands/index.html.

U.S. EPA (U.S. Environmental  Protection Agency). 2002a. Great Lakes Coastal Wetlands: Abiotic and
       Floristic Characterization. U.S. Environmental Protection  Agency, Great Lakes National Program
       Office, Chicago, Illinois. Internet accessible at the following URL:
       http://www.epa.gov/glnpo/ecopage/wetlands/glc/glctext.html.

U.S. EPA (U.S. Environmental  Protection Agency). 2002b. Methods for Evaluating Wetland Condition:
       Introduction to Wetland Biological Assessment. EPA-822-R-02-014. U.S. Environmental
       Protection Agency, Office of Water, Washington, B.C. Internet accessible at the following URL:
       http://www.epa.gov/waterscience/criteria/wetlands/.
     74

-------
U.S. EPA (U.S. Environmental Protection Agency). 2001a. Landscape Analysis and Assessment -
       Overview. U.S. Environmental Protection Agency, National Exposure Research Laboratory,
       Environmental Sciences Division, Las Vegas, Nevada. Internet accessible at the following URL:
       http://www.epa.gov/nerlesdl/land-sci/pdf/2991eb01.pdf.

U.S. EPA (U.S. Environmental Protection Agency). 2001b. National Coastal Condition Report. EPA-
       620/R-01/005. U.S. Environmental Protection Agency, Office of Research and Development,
       Office of Water, Washington, DC.

van der Putten, W.H.  1997. Die-back of Phragmites australis in European wetlands: An overview of the
       European Research Programme on Reed Die-back and Progression (1993-1994). Aquatic Botany.
       59:263-275.

van der Valk, A.G.  1981. Succession in wetlands: A Gleasonian approach. Ecology. 62:688-696.

van der Valk, A.G.  and C.B.  Davis. 1980. The impact of a natural drawdown on the growth of four
       emergent species in a prairie glacial march. Aquatic Botany. 9:301-322.

Vernberg, W.B. and B.C. Coull. 1981. Meiofauna in (F.J. Vernberg and W.B. Vernberg, eds.) Functional
       Adaptations of Marine Organisms. Academic Press, New York, New York.

Voss, E.G. 1972. Michigan Flora: Part I,  Gymnosperms andMonocots. Cranbrook Institute of Science
       and University of Michigan Herbarium, Ann Arbor, Michigan.

Whigham, D.F., D.E.  Weller, A.D. Jacobs, T.E. Jordan, and M.E. Kentula. 2003. Assessing the ecological
       condition of wetlands at the catchment scale. Landschap. 20:99-111.

Wilcox, D.A. 1995. Wetland and aquatic macrophytes as indicators of anthropogenic hydrologic
       disturbance. Natural Areas Journal. 15:240-248.

Willis, C. and W.J.  Mitsch. 1995. Effects of hydrology and nutrients on seedling emergence and biomass
       of aquatic macrophytes from natural and artificial seed banks. Ecological Engineering. 4:65-76.

Zandbergen, P. and F. Petersen. 1995. The role of scientific information in policy and decision-making:
       the Lower Fraser Basin in transition. Symposium and Workshop, May 4, 1995. Kwantlen
       College, Surrey, British Columbia, Canada.
                                                                                           75

-------
76

-------
          Appendix A: CD Browser of Landscape Metrics
                     for the Great Lakes Basin
                        Also accessible online at URL:
http://www.epa.gov/esd/land-sci/glb_browser/GLB_Landscape_Ecology_Met ric_Browser.htm
                                                                  77

-------

-------

-------
&EPA
      United States
      Environmental Protection
      Agency

      Office of Research
      and Development (8101 R)
      Washington, DC 20460

      Official Business
      Penalty for Private Use
      $300

      EPA/600/X-06/002
      March 2006
      www.epa.gov
Please make all necessary changes on the below label,
detach or copy, and return to the address in the upper
left-hand corner.


If you do not wish to receive these reports CHECK HERE D;
detach, or copy this cover, and return to the address in the
upper left-hand corner.
PRESORTED STANDARD
 POSTAGE & FEES PAID
         EPA
    PERMIT No. G-35
                                             Recycled/Recyclable
                                             Printed with vegetable-based ink on
                                             paper that contains a minimum of
                                             50% post-consumer fiber content
                                             processed chlorine free

-------