EPA/600/R-09/116  September 2009| www.epa.gov/athens
?/EPA
   United States
   Environmental Protection
   Agency
  Modeling the Impacts of Hydromodification on Water
                  Quantity and Quality

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                                                 EPA/600/R-09/116
                                                    September 2009
Modeling the Impacts of Hydromodification on Water
                   Quantity and Quality
                              by
                 Yusuf M. Mohamoud, Ph.D., P.E.
           U.S. EPA, Office of Research and Development
               National Exposure Research Laboratory
                  Ecosystems Research Division
                         Athens, Georgia

                  Anne C. Sigleo, Ph.D. (Retired)
           U.S. EPA, Office of Research and Development
        National Health and Environmental Effects Laboratory
                    Western Ecology Division
                        Newport, Oregon

                      RajbirS.Parmar,Ph.D.
           U.S. EPA, Office of Research and Development
               National Exposure Research Laboratory
                  Ecosystems Research Division
                         Athens, Georgia
                 U.S. Environmental Protection Agency
                  Office of Research and Development
                 National Exposure Research Laboratory
                    Ecosystems Research Division
                         Athens, GA 30605

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                                 NOTICE

This document has been reviewed in accordance with the U.S Environmental Protection
Agency Policy and approved for publication. Mention of trade names or commercial
products does not constitute an endorsement or recommendation for use.
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                         ACKNOWLEDGEMENT
We are grateful to Ben Scales and Lloyd VanGordon of the Oregon Water Resources
Department for providing streamflow data from the Chitwood gaging station, to K.
Ramage for the Nashville weather data, to the Dynamac team for help with sample
collections. We are also grateful to Bob Swank, Caroline  Stevens, Michael Cyterski, and
Roger Burke for reviewing Part 2 of this report and Jim Carleton for reviewing the entire
report.
                                      in

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                                Table of Contents
List of Figures                                                                       vi
List of Tables                                                                        vii
PART 1. METHOD DEVELOPMENT                                                   1
MODELING THE IMPACTS OF HYDROMODIFICATION ON WATER QUANTITY AND
QUALITY                                                                           1
1 INTRODUCTION                                                                   3
2 HYDROMODIFICATION: SOURCE OF INTEGRATED STRESSORS                      7
3 HYDROMODIFICATION CATEGORIES AND MODELING CHALLENGES                9
  3.1 Urbanization                                                                    9
  3.2 Water Withdrawals and Interbasin Transfers                                          10
  3.3 Channel Modification and Streambank Erosion                                        11
  3.4 Flow Regulation by Dams and Impoundments                                          12
  3.5 Climate Change                                                                 13
4 THE NEED FOR HYDROMODIFICATION MODELING FRAMEWORK                  15
  4.1 Essential Components of a Hydromodification Modeling Framework                       18
  4.2 BASINS Modeling Framework: A Background                                         20
  4.3 Hydromodification Decision-making Example                                          24
  4.4 Linking Integrated Stressors to A quatic Ecosystem Impacts                               2 7
  4.5 Model Application Example                                                        2 7
PART 2: APPLICATION EXAMPLE                                                   29
   5. FORECASTING URBANIZATION IMPACTS ON WATER QUANTITY AND QUALITY:
CASE STUDY OF THE YAQUINA WATERSHED, OREGON, USA                         29
  5.1 Introduction                                                                    31
     5.1.2 Watershed Description                                                        34
  5.2 Methods                                                                       38
     5.2.1 Model Setup and Input Data                                                   39
     5.2.2 Model Calibration and Validation                                               41
     5.2.3 Model Performance Evaluation Criteria                                           42
     5.2.4 Future Build-out Scenario Development                                          43
     5.2.5 Forecasting Flow, Nitrate, and TSS Alterations                                     45
     5.2.6. Linking Stressors and to Impacts                                               46
  5.3 Results and Discussion                                                            48
     5.3.1 Model Calibration and Validation Results                                         48
                                          IV

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     5.3.2 Forecasting Stressor Levels for the Build-out Scenarios                                  54
   5.4 Determining Ecologically Relevant Urbanization-Induced Stressor Indicators                   60
6 CONCLUSION                                                                            65
7 REFERENCES                                                                            67

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                                List of Figures

Figure 1. Top 10 sources of impairment in assessed rivers and streams in the United
States (Source: USEPA, 2009)	8
Figure 2. Hydromodification activities and watershed management questions that
resource managers must answer before hydromodification projects are implemented.... 17
Figure 3. Components of a hydromodification modeling framework	19
Figure 4. Matching framework modeling capabilities with hydromodification drivers,
integrated stressors, and integrated effects	22
Figure 5.. Decision-making framework for watersheds receiving hydromodification
projects	26
Figure 6. Location of the study watershed	35
Figure 7. Distribution of long-term monthly precipitation and temperature for Yaquina
Watershed	36
Figure 8. Model calibration results: streamflow (a and b), TSS (c), and nitrate (d)
calibrations	53
Figure 9. Hydrologic changes simulated for baseline, scenariolS, scenario45, and
scenarioSS: (a) daily streamflows, (b) annual water balances (c) flow duration curves at
low flow conditions, and (d) flow duration curves at high flow conditions	56
Figure 10. HSPF simulated streamflow, TSS, and nitrate concentrations for baseline,
scenariolS, scenario45, and scenarioSS	59
Figure 11. HSPF simulated 30-year mean water temperature (a), water surface width (b),
and flow velocity (c) for  baseline, scenariolS, scenario45, and scenarioSS	64
                                       VI

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                                 List of Tables
Table 1. Baseline and hypothetical future land use scenarios	37
Table 2. Model calibration and validation results	49
TableS. List of parameter values adjusted during calibration	50
Table 4. Indicators of hydrologic alteration (IHA) calculated from streamflow simulated
for the baseline and the three build-out scenarios for a 30-year period	61
                                        vn

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                  PART 1. METHOD DEVELOPMENT

MODELING THE IMPACTS OF HYDROMODIFICATION ON
WATER QUANTITY AND QUALITY

Abstract: Hydromodification activities are driven by human population growth and

resource extraction and consumption including urbanization, agriculture, forestry,

mining, water withdrawal, climate change, and flow regulation by dams and

impoundments. These anthropogenic activities alter natural flow regimes and lead to

reduced downstream water quantity and degraded water quality. Recently, USEPA and

states recognized hydromodification as a stressor and a leading source of water quality

impairment in streams and rivers. Hydromodification-induced stressors include chemical

pollutants, pathogens, nutrients, suspended solids, and flow and habitat alteration. The

diverse and interacting nature of hydromodification-induced  stressors has made Total

Maximum Daily Load (TMDL) development for impaired streams and rivers a major

regulatory challenge. Because hydromodification integrates stressors that have combined,

cumulative, and synergistic effects on water quantity and  quality, TMDL modeling

approaches are not well-suited for simulating the impacts of hydromodification.

Modeling integrated stressors requires the development and application of predictive

models and innovative modeling approaches, such as the Better Assessment Science

Integrating Point and Nonpoint Sources (BASINS) modeling framework. Although

BASINS  has been in use for the past 10 years, there has been limited modeling guidance

on its applications for complex environmental problems, such as modeling impacts of

hydromodification on water quantity and quality. This report consists of two  parts: Part 1

presents the development of a B ASINS-based methodology that is applicable to modeling


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hydromodification. Part 2 is a case study of how the proposed modeling approach can




forecast the impacts of urbanization on water quantity and quality.

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1 INTRODUCTION




   Rivers and river-fed lakes are valuable natural resources providing about 61 percent




of the nation's drinking water as well as serving riverine habitats to an estimated 40




percent of the fish species and about half of the birds in North America (Whiting, 2002).




In addition, rivers store flood waters for groundwater recharge and provide recreational




amenities, such as boating, fishing, and swimming (Whiting, 2002) along with




navigation, irrigation, power generation, and waste load transport and assimilation (Poff




et al., 1997). These valuable ecosystem services are threatened by hydromodification




projects such as land resources development for agriculture, energy, mining, forestry,




transportation, and residential housing; and water resources development for irrigation,




municipal water supply, and flood control. For instance, urban development and efforts to




use rivers for transportation, water supply, flood control, irrigation, and power generation




often alter flow regimes thus threatening the sustainability of the ecosystem services that




rivers and river-fed lakes provide (Poff et al., 1997).




   Poff et al. (1997) emphasized the importance of managing the impacts of




anthropogenic watershed disturbances and urged scientists to develop management




protocols that accommodate economic uses while protecting ecosystem functions.




Naiman et al. (2002) stated that forecasting the impacts of changing water regimes is a




fundamental challenge for the scientific community. A way to address these challenges




and achieve sustainable management of land and water resources at the watershed level is




to develop integrative modeling approaches that consider stressors as a system with




positive and negative feedback loops,  synergies, and interferences (Zimmerman et al.




2009).

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   A number of factors have delayed the development of integrative modeling




approaches and their application to complex hydromodification problems. First, cross-




disciplinary, professional boundaries, and different views among hydrologists, engineers,




planners, ecologists, and biologists make it difficult to apply a holistic approach to




evaluating the impacts of hydromodification. Second, watershed boundaries, which are




basic environmental management units, do not usually coincide with local government




boundaries where hydromodification decisions are made. Third, water quantity and water




quality are mostly regulated separately  by various federal and state agencies, even though




water quantity strongly influences water quality. Fourth, land use planning, which has




strong influence on water quantity and  quality, is regulated at the city or county boundary




level even though the impacts of land use change on water quantity and quality transcend




local boundaries.




   Recently, a number of studies have used integrative modeling approaches to assess




water allocation options (Letcher et al,  2004), develop hydrologic, agronomic, and




economic models for river basin management (Cai et. al. 2003), develop multi-objective




evolutionary algorithms for managing ecosystem services (Bekele and Nicklow, 2005),




and integrate water allocation and water quality models (Azevedo et al. 2000). Clearly,




managing the impacts of hydromodification on water quantity, habitat, and water quality




requires modeling approaches that forecast the stressor levels associated with alternative




future scenarios (Mohamoud, 2008). Two recent federal government reports on water




research and data across federal agencies have emphasized the need for comprehensive




watershed management approaches  (NRC, 2004;  General Accounting Office, 2004). In

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this report, integrative modeling approaches are defined as those capable of simulating




multiple stressors and their impacts on water quantity and quality.




   The dominant hydromodification-induced stressors include flow alteration, water




quality degradation, and habitat alteration. At present, EPA's traditional water-quality




criteria and standards program do not address the effects of habitat alteration and flow




regulation on aquatic life (Jackson and Davis, 1994). Flow alteration due to




hydromodification alters water quantity which strongly influences water quality, yet




regulatory programs usually do not examine how water quantity changes affect water




quality. An area with strong relevance to water quantity and quality is the TMDL




program because pollutant load calculations are flow-dependent and are calculated as the




product of concentration and streamflow. Flow alterations due to hydromodification may




introduce errors in TMDL allocation estimates because relationships of water quantity




and quality are not usually examined when developing TMDL plans for impaired water




bodies for watersheds impacted by hydromodification.




   The proposed modeling approach will  allow resource managers to answer some key




resource development and management questions that have strong influence on




sustainable management of land and water resources. For example, how can managers




balance water availability and demand when watershed conditions are continually




changing? How can managers jointly forecast flow alteration and water quality




degradation due to hydromodification? How can resource managers identify allowable




levels of hydromodification using "what-if' scenarios? What ecological risks are




associated with different hydromodification categories and levels? What management




options are available to resource managers to mitigate the impacts of hydromodification?

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Answering these questions would require innovative modeling approaches that can




forecast hydromodification-induced stressors, such as flow alteration, water quality




degradation, and habitat alteration; and evaluate their impacts on the health of aquatic




ecosystems.  Given the complex and the interacting nature of hydromodification-induced




stressors, a lack of holistic or integrative modeling approaches has been the reason for




our inability to manage land use, water quantity and quality, and health of aquatic




ecosystems jointly and sustainably. The objective of this study is to  show how BASINS




can be used to simulate and forecast the impacts of hydromodification on water quantity




and quality and discuss ways to assess the cumulative impacts that hydromodification-




induced stressors may have on the health of aquatic ecosystems.

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2 HYDROMODIFICATION: SOURCE OF INTEGRATED
STRESSORS

   Hydromodification describes land and water resources development activities that are

driven by human population growth and resource consumption. These activities often

produce direct or indirect changes to water quantity and quality. USEPA (1993) defines

hydromodification as the "alteration of the hydrologic characteristics of coastal and non-

coastal waters, which in turn could cause degradation of water resources." According to

USEPA (2007),  hydromodification consists of channelization and channel modification,

construction of dams and impoundments, and streambank and shoreline erosion.  In the

literature, hydromodification has also been narrowly defined as hydrograph modification.

   USEPA (2007) presents hydromodification as a leading source of water quality

impairment for streams, lakes, estuaries, aquifers, and other water bodies in the United

States. The National Water Quality Inventory Report to Congress (2004) that was

released in 2009 identified agricultural nonpoint source (NFS) pollution as the primary

(48%) water quality impairment of assessed streams and rivers followed by

hydromodification (20%), and habitat alteration (14%) (USEPA, 2009). Figure 1 shows

the top ten sources of impairment in assessed rivers and streams in the United States.

They are closely linked to human activities that alter the physical structure or the natural

function of a water body. Water quality degradations caused by hydromodification

include increased sedimentation, higher water temperature, lower dissolved oxygen,

degradation of aquatic habitat structure, and loss offish and other aquatic populations.

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                                                                             Miles
              Agriculture
        Hydromodification
               Unknown
         Habitat Alteration
           Natural/Wildlife
 Municipal Discharges/Sewage
Unspecified Nonpoint Source
    Atmospheric Deposition
       Resource Extraction
   Urban Runoff/Storm water
                              i
                             5     10    15    20    25    30    35     40    45
                                   Percent of Impaired Stream Miles Affected
Figure 1. Top 10 sources of impairment in assessed rivers and streams in the United States (Source:
USEPA, 2009)

    Adding to USEPA's narrow definition of hydromodification, we define

hydromodification more broadly to include urbanization, climate change, water

withdrawals, and inter-basin transfers. Our intention is to use the term for a wide range of

anthropogenic watershed disturbances that alter natural flow regimes and degrade water

quality. Addressing the impacts of integrated stressors is more effective than addressing

stressors individually one at a time because integrated stressors have integrated effects

that are not independent. Furthermore, many watersheds are impaired by  integrated

stressors and resource managers are unable to identify the cause of impairment. Despite

being a major source of impairment in assessed water bodies, modeling approaches that

consider the impacts of hydromodification on water quantity and quality are not

available.  The following sections present selected hydromodification categories and

introduce  our proposed approach to modeling each category. Note that water quantity,

flow, streamflow, and water availability are used interchangeably throughout this report.

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3 HYDROMODIFICATION CATEGORIES AND MODELING
CHALLENGES

3.1 Urbanization

   As the total impervious area in a watershed increases, peak flow rates and flow

volumes increase (Arnold and Gibbons, 1996; Tang et al., 2005) and baseflow and

groundwater recharge decrease (Rose and Peters, 2001). Such alterations of natural flow

regimes affect the distribution of surface water and baseflow components of streamflow.

Hydrologic imbalances caused by urbanization have serious consequences for water

availability. In many parts of the world, incidence of water supply shortages due to land

use change have been reported for communities in water-rich areas (Okun, 2002). In the

United States, frequent, severe droughts and urbanization-induced water shortages have

been observed in some parts of New England, in the southeast (Atlanta), and in areas in

the west coast (Seattle and Portland) (Sehlke, 2004).

   Urbanization not only alters natural flow regimes, it also degrades water quality. For

sub-basins in east of Melbourne, Australia, Hatt et al. (2004) found that water quality

loads were correlated with imperviousness and drainage connections. Other studies have

linked urbanization and associated imperviousness to increased sediment, bacteria, and

nutrient loads (Schueler, 1995; Gove et al., 2001; Mallin et al. 2001

   Our approach to forecasting the impacts of urbanization on water quantity and quality

is presented in Part 2 of this report.

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3.2 Water Withdrawals and Interbasin Transfers





   Water withdrawn directly from rivers and streams alters the natural flow regime.




Withdrawals and interbasin transfers are water management options that allow managers




to balance water demand and water availability by issuing water withdrawal permits.




However, without knowing the available water levels under future development




scenarios, issuing water withdrawal permits would not balance water demand and water




availability. It may, however, lead to violation of downstream environmental flow targets




and minimum flows required by the Endangered Species Act (ESA). Managing the




effects of water withdrawals and interbasin transfers not only requires the use of




hydrologic and water quality models to forecast scenario-specific water quantity and




quality changes, but also water allocation models to ensure that sufficient quantity and




quality of water is available to all water users. In general, water allocations are simulated




with state-specified models that have no hydrologic and water quality simulation




capabilities. These models include the Water Rights Analysis Package (WARP) used in




Texas (Wurbs, 2005) and MODSIM: River Basins Management Decision Support




System used in Colorado (Labadie, 2005).




   Our approach to modeling the impacts of water withdrawals  on streamflow uses




HSPF to simulate water quantity and quality projections for alternative future scenarios.




Under each scenario, the effects of water withdrawal levels on downstream flow targets




and water quality impaired streams are evaluated, and the scenario that most closely




matches water availability with water demand and minimizes the overall impacts of




hydromodification is selected.
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3.3 Channel Modification and Streambank Erosion





   Streams and rivers, which are important habitats to many aquatic organisms, are




affected by channel modification. Channel modifications include direct channel




operations such as dredging, widening, and straightening, or indirect modifications




caused by flow alteration. Today, many streams and rivers are degraded by




hydromodification-induced stressors such as flow alteration, unsanitary discharge, and




channelization projects (Leblanc et al.,1997). A number of investigators have examined




the ecological impacts of hydromodification by assessing the biotic integrity of streams




using multi-metric indices, such as the indices of biotic integrity (IBI) (Karr 1991;




Fitzpatrick et al. (2004) or bioindicator approaches (Adams, 2005). To link urbanization-




induced stressors to stream habitat degradation, a number of investigators have examined




relationships between total impervious area (TIA) and biological integrity (Morse et al.,




2003; Booth et al. 2004). Other investigators have related hydrologic metrics (estimated




from simulated or observed streamflow data) to biological integrity (Claussen and Biggs,




1997; Booth et al., 2004; Konrad et al., 2005).  For example, Richter et al. (1996)




identified flow magnitude, frequency, duration, timing, and rate of change as ecologically




relevant hydrological indicators.




   Our approach to modeling channel modification and Streambank erosion consists of




three steps. First, modelers use HSPF to simulate changes in water quantity and quality




due to hydromodification.  Second, modelers develop hydrologic indicators (e.g., Q2)




from simulated long-term streamflow time series. In general, Q2 is defined as the flow




that corresponds with the two-year recurrence interval. Third, modelers evaluate the




impacts of simulated  stressors such as increased flow velocity, shear stress, and
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streambed and streambank erosion on stream habitat quality. Specifically, our approach




to modeling the impacts of channel modification on stream habitat is to use simulated




hydrologic, hydraulic, and water quality metrics that link hydromodification-induced




stressors to stream habitat quality. In addition, hydromodification impacts on stream




habitat can be evaluated by linking HSPF to a habitat suitability model such as




PHABSIM (Milhous et al. 1984).






3.4 Flow Regulation by Dams and Impoundments




   Trends in urbanization, population growth, and increased water demand and usage




have led to extensive damming of rivers and streams. In the United States,  more than




85% of the inland waterways are now artificially controlled (NRC, 1992), including




nearly  1 million km of rivers that are affected by impoundments (Echeverria et al.  1989).




Dams and impoundments  control flooding, generate electric power, and provide




irrigation,  navigation, recreation, and municipal water needs, but in some cases, their




benefits to society are outweighed by their adverse environmental impacts. Dams and




impoundments cause flow alteration, and inundate wetlands and riparian areas. They also




tend to reduce or eliminate downstream flooding, block fish migration routes,  increase




turbidity and sedimentation during construction, and retain sediment after construction.




   Flow regulation by dams and impoundments profoundly alters natural flow regimes,




which results in degraded  river ecosystems (Ward and Stanford, 1995; Ligon et al. 1995;




Power et al., 1996). Fishery managers have long argued that maintaining the pre-




development natural flow  regime is essential to the composition and  structure  of native




riverine ecosystems and associated biodiversity (Richter et al. 2000). To mitigate the




ecological impacts of flow regulation, several mitigation measures have been proposed.
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These measures include: establishing minimum flow releases (Colby, 1990), offering




controlled flushing flows (Collier et al 1997), or maintaining natural flow regimes to flow




levels observed before the regulation project (Stanford et al., 1996; Poff et al. 1997).




   Our approach to modeling the impacts of flow regulation on water quantity and




quality is to set up a flow regulation scenario by placing a hypothetical dam and




impoundment at  different locations in the watershed. The first step is to build an HSPF




hydraulic function table known as the FTable with the desired elevation-area-storage-




discharge relationships to represent the dam and the impoundment. To evaluate the effect




of flow regulation on natural flow regimes, modelers can compare pre-regulation and




post-regulation observed and simulated streamflows for each future scenario. Based on




these comparisons, they select scenarios that maintain the pre-development hydrologic




condition of the watershed. Resource managers can also examine levels of stressors




associated with different flow regulation scenarios to  select a scenario that minimizes the




integrated effects of flow regulation on water quantity, quality, and the health of aquatic




ecosystems.






3.5 Climate Change





   General circulation models (GCMs) are used to make future climate change




projections that account for increasing levels of CC>2 in the atmosphere. Mean global




surface temperature is expected to increase in the range of 1.5 to 5.8 °C by 2100




(Houghton et al., 2001). For the United States, mean temperature and precipitation




projections are about 4.5 °c increase in temperature and 7.5 % increase in precipitation. In




general, GCM model projections are used to estimate changes in precipitation and




temperature. Four commonly used GCM models are: The Goddard Institute of Space
                                        13

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Studies (GISS), Geophysical Fluid Dynamics Laboratory (GFDL), the United Kingdom




Meteorological Office (UKMO), and the Oregon State University (OSU) models. Climate




change projections vary across regions, but most regions are projected to have increased




frequency of intense storms, increased soil erosion and sedimentation, and increased sea-




level. Consequently, climate change can be expected to have serious effects on water




quantity, water quality, and the health of aquatic ecosystems.




   Our approach to modeling climate change impacts on water quantity and quality is to




use GCM temperature and precipitation projections. Model users can select scenarios that




are similar to mean GCM projections for the United States or scenarios that differ from




mean GCM projections. For example, a modeler could select a scenario that has 10%




increase in annual precipitation, with a  10% increase in the frequency of high




precipitation events, and increased return frequency of storms of particular magnitudes.




For temperature increases, the modeler could select a corresponding scenario with two




degree increases during the cool season months, and  four degree increases during the




warm months.




   Note that climate change is only one driver of hydromodification, and it can be




addressed separately or concurrently with urbanization, flow regulation, and channel




modification. For more discussion on generating climate change scenarios for the HSPF




model in BASINS, interested readers should refer to  the Climate Assessment Tool (CAT)




manual, which can be accessed at




http://cfpub.epa.gov/ncea/cfm/recordisplay.cfm?deid=203460.
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4 THE NEED FOR HYDROMODIFICATION MODELING
FRAMEWORK

    The proposed hydromodification modeling approach makes the watershed the unit of

management and regulatory focus. This is based on the concept that every land area

belongs to a watershed and that the integrated effects of all hydromodification activities

that occur in a watershed have a measurable impact at the watershed outlet or at some

downstream point of interest. Watershed-based approaches also address the complexities

in modeling hydromodification impacts and allow resource managers to forecast

scenario-specific hydromodification stressor levels, evaluate their impacts on water

quantity and quality, and develop management plans that mitigate the impacts of

hydromodification-induced stressors. The proposed approach is applicable to restoration

efforts, but is more suitable for protecting least developed watersheds or pristine

watersheds that require judicious management and development protocols. To guide

management decisions that protect or restore watersheds, we present some key

hydromodification related questions that resource managers must answer before

hydromodification project plans are implemented in a watershed (Figure 2).

   The watershed-based concept presented in Figure 2 resembles the TMDL process in

the sense that TMDLs are intended to reduce pollutant loads to levels that can be

assimilated by a water body in order to meet EPA's water quality standards. In general,

the TMDL process has a very limited scope because it addresses water quality only, and

not water quantity. In addition, TMDLs often target a  single stressor and a single water

body. Unlike  TMDL approaches,  the approach described in this report assesses a

watershed's capacity to assimilate not only pollutant loads, but also all
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hydromodification-related stresses. Managing hydromodification impacts on water




quantity and quality at the watershed level has many benefits but it requires cooperation




among stakeholders. Cooperation among stakeholders is essential because watershed




boundaries often cross multiple jurisdictions. The New Jersey Department of




Environmental Protection (NJDEP) recognized that pollutant loads, water withdrawals,




and land use required new approaches that could not be addressed by regulatory




programs alone (EPA, 2004). Regulatory programs such as TMDLs have limited scope




and cannot be used to address integrated stressors such as flow alteration, habitat




alteration, and water quality degradation.




    The proposed approach was developed in recognition of the need for comprehensive




watershed management approaches that link economic development to ecosystem




sustainability. For instance, using the proposed modeling approach, resource managers




can identify where to institute land preservation, and where to place hydromodification




projects in a watershed (Figure 2).
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                           Can land use planners, resource managers, and
                           regulatory staff agree on allowable stressor levels before
                           implementing hydromodification project plans in a
                           watershed?
     Water Withdrawal
Dam and Impoundment
What management
options are
available to
mitigate the
impacts of
hydromodification
projects at the
watershed scale?
                                                                   Urbanization


                                                                     Channel
                                                                     Modification
                            What levels of flow alteration and water
                            quality degradation or loss of ecosystem
                            services due to hydromodification can be
                            assimilated by a watershed?
 Figure 2. Hydromodification activities and watershed management questions that resource managers
 must answer before hydromodification projects are implemented.
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4.1 Essential Components of a Hydromodification Modeling Framework







   Figure 3 illustrates a conceptual hydromodification modeling framework that consists




of four components. The first component characterizes present and future




hydromodification levels using "what-if' scenarios that have different percentages of




urban land and percent impervious cover, different distributions of land use across a




watershed, number and location of dams and water impoundments, and water withdrawal




and inter-basin transfer amounts.




   The second component identifies and quantifies scenario-specific levels of




hydromodification-induced stressors, i.e. flow and habitat alterations and water quality




degradation, and assesses how integrated stressors may affect the health of aquatic




ecosystems.




   The third component identifies and selects best management practices (BMPs) that




mitigate the impacts of hydromodification on water quantity and quality. Mitigating the




impacts of hydromodification requires a watershed-scale hydromodification management




plan that may include of BMPs for controlling runoff at the source (i.e. those that




enhance infiltration). Local governments in coastal California and other western states




developed hydromodification management plans to control nonpoint source pollution




from urban watersheds.




   The fourth component uses adaptive management to iteratively evaluate how model




simulation results agree with data obtained after future scenarios are implemented in the




watershed. By continuously updating the model and comparing scenario-specific model




forecasts with post-implementation observed data, resource managers can determine
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when stressor levels reach unsustainable levels and modelers can validate model

simulations and minimize predictive uncertainties..
                     1. Characterize present
                     condition (baseline) and project
                     future scenarios
    4. Match model simulation
    results and post-
    development observed data
    (adaptive management)
2.Quantify hydromodification-
induced stressors
             3. Manage the impacts of
             hydromodification-induced stressors
             (hydromodifcation management plan)
Figure 3. Components of a hydromodification modeling framework
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4.2 BASINS Modeling Framework: A Background





   The Clean Water Act was established to restore and maintain the chemical, physical,




and biological integrity of the nation's waters. In the  1970s and 1980s, EPA successfully




regulated point source pollution through the National Pollutant Discharge Elimination




System (NPDES) permit program. However, managing nonpoint source pollution from




terrestrial ecosystems has proven to be more difficult. To manage this problem




efficiently, EPA adopted an approach that makes the watershed the unit of regulatory




focus (USEPA, 1998; Whittemore and Beebe, 2000). Adoption of the watershed




approach as the management and regulatory unit has created a need for watershed models




and modeling approaches. Today, watershed models are widely used to manage nonpoint




source  pollution, particularly through the development of TMDL plans for water quality




impaired water bodies. To manage land and water resources in a sustainable manner,




resource managers need modeling approaches that also forecast the impact of




hydromodification on water quantity and quality. In 2007, EPA released a guidance




document on managing nonpoint source pollution caused by hydromodification (USEPA,




2007).  This document listed a number of models applicable to hydromodification




modeling, but did not present specific hydromodification modeling guidance. HSPF and




AQUATOX, which are part of the BASINS modeling framework, were among the




models listed.




   In 1996, USEPA released BASINS ver.  1.0 modeling and decision support system




(EPA,  1996a). BASINS  integrates Geographic Information System (GIS) tools, national




databases (elevation, hydrography, meteorological, land use, and soil), assessment tools




(target, assess, and data mining), data management and graphing programs (WDMUtil
                                      20

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and GenScen), models (HSPF, SWAT, PLOAD, and AQUATOX), and analysis tools




including the Climate Analysis Tool (CAT).




   Figure 4 matches BASINS' modeling capabilities with hydromodification drivers,




stressors, and impacts. As shown in Figure 4, using GIS tools and databases, BASINS




provides access to information about soils, topography, and land use and land cover of a




watershed. In addition, BASINS provides  information on hydromodification projects




already present in the watershed and their  distribution in the landscape. Resource




managers can use BASINS to identify priority areas for preservation and development.




As stated earlier, hydromodification activities are driven by population growth and the




accompanying need for resource extraction and consumption. The watershed




management goal is to minimize the impacts of economic development projects on water




quantity and quality by reducing hydromodification-induced stressors to levels that can




be assimilated by the watershed or mitigated through BMPs. Here, we briefly discuss




some of the models available in BASINS that apply to modeling hydromodification.
                                       21

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Hydromodification
(Drivers)
Channel modification
Climate change
Resource extraction
Dam and impoundment
Urbanization
Water withdrawal



Integrated Stressors
(Consequences)
Flow alteration
Habitat alteration
(streambank erosion)
Water quality degradation



Integrated Effects
(Impacts)
Maintain healthy ecosystems to
achieve ecological sustainability
1 1 1
ASINS Modeling Framework _^ HSPF — + AQUATOX
)atabases, GIS tools, and Models) (CAT and BMPs)
Figure 4. Matching framework modeling capabilities with hydromodification drivers, integrated
stressors, and integrated effects.

   HSPF is EPA's premier watershed hydrology and pollutant transport model

(Whittemore and Beebe, 2000) and is the core watershed model in BASINS. HSPF

simulates hydrologic processes and water quality for a range of types of user-defined

scenarios. Because of its extensive water quality simulation capabilities, HSPF is

frequently used for TMDL plan development for impaired water bodies. In addition to

water quality and hydrologic process simulations, HSPF also serves as a water allocation

model. It has been used to assess the effects of land use change on streamflow (Brun and

Band, 2000; McColl and Agett, 2007), effects of water withdrawal on streamflow

(Zariello and Reis, 2000),  and effects of climate change on water quantity (Middlekoop et

al. 2000; Goncu and Albek, 2009). Furthermore, HSPF has been used for developing

hydrological and biological indicators of flow alteration in the Puget Sound low land

streams (Cassin et al. 2005). Although HSPF is the core model, BASINS has other

models and tools that are applicable to modeling hydromodification. Models and tools

that are relevant to the objectives of this study are AQUATOX, climate analysis tool

(CAT), and HSPF's BMP  Toolkit. Whittemore and Beebe (2000) reviewed BASINS and


                                       22

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noted that its success would depend on efforts to share technical experiences and




solutions to problems.




   The BASINS Climate Analysis Tool generates climate change scenarios for HSPF.




CAT users need information on climate change projections for the region of interest




within the United States. Based on Global Circulation Models (GCMs) projections of the




region of interest, CAT users can develop climate change scenarios by changing




temperature, precipitation, and evapotarnspiration data. Note that CAT is not available in




early versions of BASINS, but is available in BASINS 4.




   Representing best management practices and simulating their effectiveness in




controlling nonpoint source  pollution is a desirable feature in regulatory models. In




general, models employed for TMDL plan development are not well-suited for plan




implementation because many models lack BMP representation and simulation




capabilities;  Whittemore and Beebe (2002) emphasized these aspects of the HSPF model.




According to Endreny  (2002), HSPF has no explicit simulation of storm  sewer networks




and lacks the capability to simulate common water quality BMPs. A recently developed




HSPF BMP  Toolkit represents some types of BMPs, and it can be used to evaluate their




effectiveness in controlling runoff and pollutant loads. HSPF BMP related limitations




have been addressed and HSPF is now one of the few publicly available watershed




models with capabilities to represent and  simulate vegetative, storage, and infiltration




BMPs. Currently, the BMP Toolkit is a web-based tool and is not part of BASINS, but




modelers can easily work with the BMP toolkit to modify their model input data.  .




   AQUATOX is an ecological effects model that can be used to evaluate past, present,




and future direct and indirect effects from various stressors, including nutrients, organic
                                       23

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wastes, sediments, toxic organic chemicals, flow and water temperature in aquatic




ecosystems (Park et al. 2008). AQUATOX uses HSPF output as input, including results




of simulations that include hydromodification-influenced stressors. Based on the




magnitudes of stressors generated by HSPF in different scenarios, AQUATOX can




simulate how hydromodification-induced stressors may affect biota in aquatic




ecosystems.






4.3 Hydromodification Decision-making Example





   Figure 5 presents a flow chart describing how to apply the BASINS modeling




framework to watersheds that are likely to experience hydromodification. As an example,




we selected two hydromodification categories: urbanization and flow regulation by dams




and impoundments. For each, we present a list of hydromodification-induced stressors




and scenarios. As shown in Figure 5, the first step is to characterize the current




hydromodification levels,  then determine if additional hydromodification projects are




planned for the watershed. First, modelers use HSPF to simulate streamflow and water




quality; modelers then calibrate and validate the model under present conditions. After




successful calibration and validation, model users then simulate flow and water quality




for the future  scenarios. Comparisons of flow and water quality for pre-




hydromodification (current watershed condition) and post-hydromodification determines




flow alteration and water quality degradation levels associated with each scenario.




    In the second step, after simulating flow and water quality for baseline and future




scenarios, model users set up HSPF as a water allocation model to allocate and track how




different hydromodification categories and scenarios affect water use and availability.




HSPF uses a schematic network of nodes and links to track changes in inflows, storages,
                                       24

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and outflows over time. To minimize flow alteration impacts, resource managers may




seek to identify scenarios that closely match pre-hydromodification water availability




levels.




   In the third step, model users simulate how alternative future may alter stream




habitats and water quality. Models in this case are used to evaluate how simulated




changes due to hydromodification are likely to affect existing TMDL allocations and/or




the health of aquatic ecosystems. As an example, modelers can employ the AQUATOX




model to explore whole-system stressor-response relationships. Modelers can also extract




hydrologic  and water quality indicators or metrics from simulated streamflow and water




quality data, then use these metrics to explore system stressor-response relationships.




Based on simulated scenario comparisons, resource managers can select




hydromodification management plans that minimize undesirable impacts on aquatic




resources. Finally, to address model predictive uncertainties, resource managers may




employ an adaptive management approach to compare and update model simulations




based upon data collected after initiation of hydromodification projects.
                                       25

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                                Characterize the current hydromodification level of the watershed
                                                                                                                                    Maintain
                                                                                                                                    current water
                                                                                                                                    quantity an
                                                                                                                                    quality
                                                                                                                                    condition of the
                                                                                                                                    watershed
                                                        Are there any
                                                        planned
                                                        hydromodification
                                                        projects?
                                                                                              Develop a baseline
                                                                                              model for the watershed
What type of hydromodification projects
are planned for the watershed?
                                          Construction of Dams and Impoundments
                                                                                                 Management Plan
                                                                                                 Evaluation
                                                                                                 Are flow alterations and
                                                                                                 water quality
                                                                                                 degradation controlled?
                                                                                                 Are water availability
                                                                                                 and demand balanced?
                                                                                                 Are ecosystem services
                                                                                                 maintained at prepoject
                                                                                                 levels?
Future build-out scenanos
        Set hypothetical
        "what-if build-out
        scenarios with
        different total
        impervious area
        (TIA) levels
                                    Future scenarios
                                            Build a new dam/reservoir
                                            Test different water withdrawal
                                            levels
                                            Test different reservoir
                                            operations and water allocation
                                            options
Hydromodifi
-cation
impacts are
minimized
      Stressor forecasting (HSPF Model)
              Forecast flow alteration
              Forecast water quality degradation
              Forecast habitat alteration
                                       \/ Forecast water availability
                                       \/ Forecast water demand
      Link HSPF to AOUATOX Model
      Assess the ecological risks associated
      with alternative future scenarios
                                            Hydromodification Management Plan
                                            Simulate HSPF with/without BMPs,
                                            select suitable best management practices
                                            (BMPs) using HSPF BMP Toolkit
                                                                                            Adaptive Management
                                                                                                Select different scenarios and re-evaluate the
                                                                                                decision-making process
Figure 5. Decision-making framework for watersheds receiving hydromodification projects
                                                                      26

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4.4 Linking Integrated Stressors to Aquatic Ecosystem Impacts







   As stated earlier, AQUATOX is an ecological risk assessment model, which is part of




the BASINS modeling framework. AQUATOX simulates the effects of multiple




simultaneous Stressors that may include nutrients, organic toxicants, temperature,




suspended sediment, and flow, on the health of aquatic ecosystems. Potential applications




of the AQUATOX model include estimation offish recovery after pollutant loads are




reduced, ecosystem responses to invasive species, effects of mitigation measures,  and




changes in ecosystem services. By forecasting hydromodification-induced Stressors using




HSPF as the load-generating model, and assessing the resulting ecological impacts of the




simulated Stressors with AQUATOX, resource managers can evaluate the biological




ramifications of hydromodification projects before the projects are implemented.




Although linking integrated Stressors to aquatic ecosystem impacts is beyond the scope of




the current study, our suggested approach to establishing stressor-response relationships




is to link HSPF to the AQUATOX model.






4.5 Model Application Example





   In Part 2 of this report, we present a case study demonstrating how BASINS can be




used to forecast urbanization-induced Stressors, namely flow alteration and water quality




degradation under various urban development scenarios. We include in this example a




brief discussion of how urbanization-induced Stressors affect stream channel erosion. We




also attempt to link urbanization-induced Stressors to impacts on the health of aquatic




ecosystems using hydrological indicators or metrics. As a test watershed, we selected a
                                       27

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medium-sized headwater watershed, which is a tributary of the Yaquina Watershed in




Oregon, USA.
                                      28

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                  PART 2: APPLICATION EXAMPLE

5. FORECASTING URBANIZATION IMPACTS ON WATER
QUANTITY AND QUALITY: CASE STUDY OF THE YAQUINA
WATERSHED, OREGON, USA
Abstract:  Protecting ecosystem services provided by headwater watersheds increasingly

is becoming an important land and water management objective. To allow resource

managers to minimize future watershed degradation and eliminate the need for

restoration, we present a method to forecast potential impacts of urbanization before

urban development plans are implemented in a watershed. The method establishes both a

baseline that represents the pre-development condition,  and build-out scenarios that

represent future development. In this report, we arbitrarily selected three future build-out

scenarios that represent 15, 45, and 85 percent total impervious area (TIA), where

impervious cover was used as a landscape indicator to represent the effects of

development. We employed the Hydrological Simulation Program - FORTRAN (HSPF)

watershed model to simulate streamflow, total suspended solids (TSS), and nitrate in the

baseline scenario and for the three build-out scenarios. Comparisons of simulated results

in the baseline scenario to those forecasted for the three build-out scenarios show

increased peak flows and decreased baseflows for the build-out scenarios. Nitrate

simulation results show increased nitrate concentrations for the three build-out scenarios.

Suspended sediment concentrations were forecasted to increase with increasing TIA from

15 to 45 percent, but the 85 percent TIA scenario resulted in lower TSS concentrations.

Our forecasts also indicate that mean channel wetted width, flow depth, and flow velocity

decrease with increasing percent TIA. The proposed method serves as an exploratory
                                     29

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approach in which resource managers and land use planners forecast urbanization-




induced stressors before urban development plans are implemented in the watershed. The




impacts of these stressors on aquatic ecosystems and services can then be simulated.
                                       30

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5.1 Introduction
   For nearby receiving water bodies, urbanization has been found to lead to altered

hydrologic regimes, deteriorated water quality, losses of habitat and biodiversity, beach

closings, fishery declines, and fish consumption advisories (Nixon, 1995; Richardson,

1997; Rabalais et al., 1996; Boesch at al., 2001; Elofson et al., 2003; Niemi et al., 2004).

Many of the adverse ecological impacts of urbanization are closely linked to increases in

impervious area (Paul and Meyer, 2001; Allan, 2004). The percent of total impervious

area (TIA) is that portion of a watershed area covered by built surfaces such as paved

roads, parking lots, sidewalks, driveways, and rooftops. Percent TIA in a watershed has

been used as a gross indicator of urbanization and associated impacts on streamflow (Ng

and Marsalek, 1989), water quality (Schueler, 1994; Arnold and Gibbons, 1996; Conway,

2007), and the health of aquatic ecosystems (Klein, 1979; Morse et al., 2003).

    In general, as the percent TIA increases, the fraction of precipitation that is able to

infiltrate the soil and recharge groundwater decreases, and the fraction that becomes

overland runoff increases (Schueler,  1994). Without major mitigation measures,

urbanization causes reduced baseflow and declining water tables, and increased flood

flow magnitude and frequency (Arnold and Gibbons, 1996; Paul and Meyer, 2001), with

resulting changes in stream channel morphology and in-stream suspended sediment from

the increased scouring,  and consequent stream habitat degradation (Booth, 1990;  Paul

and Meyer, 2001).

Urbanization also causes increased nutrient (Creed and Band, 1998; Wernick et al., 1998;

Donner et al., 2004), suspended sediment (Nelson and Booth, 2002; Wotling and

Bouvier, 2002) and other pollutant inputs (e.g. metals, pesticides, road salts) from

-------
terrestrial areas to receiving water bodies, along with increased water temperature (Niemi




et al., 2004). Such urbanization-induced changes cause stresses to aquatic organisms that




impair the overall health of aquatic ecosystems. Increased nitrate export to coastal waters




leads to estuarine eutrophication, with changes in biotic community structure and




diversity (Turner and Rabalais, 1991; Vitousek et al., 1997; Boesch et al., 2001).




Compton et al. (2003) found positive correlation between nitrate concentrations and




broadleaf cover dominated by red alder (alnus rubra) in forested watersheds in the




Oregon Coast Range. Increased sediment inputs cause reduced light penetration and may




directly impede the reproductive processes of aquatic organisms (Wotling and Bouvier,




2002; Nelson and Booth, 2002).




   Land use planners and decision-makers need guidance on how to forecast the impact




of urban development on hydrologic processes (e.g., increased flood frequency and loss




of groundwater recharge), on nutrient and sediment concentrations,  and on ecological




integrity (e.g., loss of biodiversity and wildlife habitat). Much of what is known about the




effects of urbanization-induced stressors  on aquatic ecosystems was obtained through




field observations (Morse et al., 2003; Konrad and Booth, 2005). Monitoring urban




streams alone cannot, however capture the full impact of urbanization because impacts




observed in urban streams are often moderated by existing best management practices




(BMPs). In addition, monitoring urban streams usually does not account for impacts that




have occurred during construction but before mitigation measures were fully




implemented. Stream monitoring is a reactive approach that offers limited insights to land




use planners and decision-makers. The ability to forecast future conditions reliably in
                                        32

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urban streams before implementation of development plans obviously would be more




helpful.




   Many investigators acknowledge the interdependence of structure and function of




stream ecosystems and natural flow variability (Poff and Allan, 1995, Power et al., 1996,




Richards et al., 1997). For example, flow alterations often result in changes to the




ecological organization of aquatic and riparian systems that lead to changes in physiology




and behavior of individuals, populations, community composition, and food web




structure (Poff et al., 1997; Bunn and Arthington, 2002; Poff et al., 2006). Building on




such established relationships, hydrologic metrics with strong ecological relevance have




been developed for natural flows (Poff and Ward, 1989; Poff et al., 1997) and for altered




flows (Richter et al., 1996; Olden and Poff, 2003). However, approaches that link




urbanization-induced stressors explicitly to specific ecological effects, such as loss of




aquatic life or physical habitat, are lacking.




   A proactive approach is needed for forecasting urbanization-induced stressor levels




and establishing links between them and the resulting condition of aquatic ecosystems.




An alternative to monitoring streams to assess the ecological impacts of urbanization is to




forecast urbanization impacts with hypothetical build-out scenarios or actual




development plans. Using hypothetical build-out scenarios, resource managers employ




comprehensive watershed models to forecast urbanization-induced stressor levels before




implementation of urban development plans and  any associated mitigation measures in a




watershed. We propose herein using the Hydrological  Simulation Program - FORTRAN




(HSPF) (Bicknell et al., 2001) to simulate streamflow, nitrate, TSS, and channel




morphology changes.
                                        33

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   The objective of this study is to present a modeling approach to forecast potential




impacts of alternative urban development scenarios by using watershed total percent




impervious area as an indicator of urban development impacts on hydrology, flow width,




flow depth, flow velocity, nitrate concentration, and TSS concentration.






5.1.2 Watershed Description







   The study watershed is a headwater tributary located upstream of the United States




Geological Survey's gaging station near Chitwood, Oregon (44° 39' 29" N,  123° 50' 15"




W) (Figure 6). The study watershed is characterized by wet winters, relatively dry




summers, and mild temperatures that are typical of the Coastal Range areas of Oregon.




The long-term average annual precipitation for Newport is 1767 mm. Precipitation




rainfall comes from moist air masses from the Pacific Ocean. A large portion of the




precipitation occurs in November, December,  and January. Conversely, the warmest and




driest months are July, August, and September (Figure 7).
                                       34

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                                                                                USGSGage      Elevation (m)
                                                                               1 Yaqmna River     MM High : 811
                                                                                Streams
                                                                               I Study Watershed        Low : 13
Figure 6. Location of the study watershed.
                                              35

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      350
   8

  Q_
      100 --




       50 --
                                    Average Monthly Precipitation


                                    Average Monthly Temperature
                                          n.n
16



14



12



10
                                                                              o
8   !
    o
    Q.

    E
    o
6



4



2
           Jan  Feb  Mar   Apr  May  Jun  Jul  Aug   Sep  Oct  Nov  Dec

                                       Month





Figure 7. Distribution of long-term monthly precipitation and temperature for Yaquina

Watershed



   The watershed has a drainage area of 184 km2. Presently, the study watershed is 97



percent covered by evergreen forest, about two percent covered by agricultural land, and



about one percent covered by medium density urban residential land (Table 1). The



dominant land cover is coniferous forest because the original complex forest has been



replaced by single species silviculture and opportunistic pioneer species. In riparian areas



along streams, disturbed sites are frequently occupied by pioneer broad-leaf trees (e.g.,



red alder) (Ohmann and Gregory, 2002).



   The dominant soil of the study watershed is Bohannon soil series found on the



western slopes of the Oregon Coast Range areas. The soils of the watershed are generally
                                        36

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well drained with poorly developed horizons (Ohmann and Gregory, 2002 ). Geological
formations of the watershed contain massively to thinly-bedded tuffaceous siltstones,
sandstones, basalt breccias, and augite-rich tuff that provide a constant source of silica
and suspended sediment (Snavely and Wagner, 1963).

Table 1. Baseline and hypothetical future land use scenarios
       Watershed Area (Hectares) by Land use Category      Impervious Area at
                                                            Build-out (%)
Scenarios    Forest (ha)    Agriculture (ha)     Urban (ha)
Baseline      18057        261
Scenario 15    12946        261
Scenario45    7443         261
ScenarioSS    106          261
   25
 5136
10639
17976
15
45
85
                                       37

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5.2 Methods




The method proposed to forecast urbanization-induced stressors consists of the following




steps. More detailed discussion of each step is given in subsequent parts of the methods




section.




Step 1: Characterize the current land use, hydrology, and water quality of the watershed




(baseline analysis and characterization).




Step 2: Simulate flow, TSS, and nitrate under baseline conditions.




Step 3: Calibrate and validate flow, TSS concentration, and nitrate concentration




simulated by the model for the baseline condition using observed flow, TSS, and nitrate




data.




Step 4: Project future development scenarios using actual land use plans if available or




hypothetical build-out scenarios if plans are not available for the watershed.




Step 5:  Simulate flow, TSS, and nitrate for selected future build-out scenarios using the




model parameters calibrated under the baseline condition.




Step 6: Develop urbanization-induced stressor indicators from simulated flow, TSS, and




nitrate data for each scenario. To establish cause and effect relationships between




forecasted urbanization-induced stressors and their ecological impacts, we used




hydrological alteration indicators. For each scenario, we estimated 7Q10 (7-day average




low-flow with a recurrence interval of 10 years), bankfull flow, baseflow index (total




volume of base flow divided by the total volume of runoff for a period) (Wahl and Wahl,




1995), and indicators of hydrological alteration (IHA) from scenario-specific simulated




streamflow. Indicators of hydrologic alteration (IHA) captures five flow characteristics
                                        38

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that are related to biological integrity: magnitude, duration, frequency, timing, and rate of




change (Richter et al., 1996). Other flow-related forecasted physical habitat indicators




include shear stress, depth, and flow velocity. In addition, we estimated nitrate and TSS




concentrations for each scenario. Calculating indicators from forecasted streamflow, TSS,




and nitrate offers to land use planners an exploratory approach where potential ecological




impacts of urbanization can be predicted before urban development plans are




implemented in a watershed.




Step 7: Establish linkages between urbanization-induced stressors and ecological impacts




(hydrologic, hydrologic, and water quality indicators)




8. Link HSPF to AQUATOX model and assess the ecological impacts of build-out




scenarios






5.2.1 Model Setup and Input Data





   HSPF is a calibrated-parameter model which uses observed data for its calibration




and validation. For this study, observed streamflow, TSS, and nitrate data were obtained




at the Chitwood gaging station (USGS 14306030). Daily streamflow data from 1972 to




1991 were obtained from a USGS website (USGS, 2007), supplemented by data from the




Oregon Water Resources Department that is available at




http://www.wrd.state.or.us/OWRD/SW/streamflow_midco.shtml. Daily observed




streamflow averages 7.1 m3/sec, although it can vary from 0.06 m3/sec during late




summer low flow conditions, to 186 m3/sec at peak flow conditions in late fall and winter




(October to March).




Nitrate data were collected weekly from December 1999 through December 2001, and




monthly from January 1999 to December 2002, at the USGS stream gaging station near
                                       39

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Chitwood. Water samples collected for dissolved nutrient measurements were filtered




(Cole Farmer 142 mm nylon filter 0.45 jim membranes) and frozen for later analysis by




the Marine Science Institute (MSI), University of California, Santa Barbara, CA using a




Lachat QwickChem 8000 Autoanalyzer for simultaneous determination of nitrite and




nitrate + nitrite. Analytical information, including blank procedures, sample replicate




results, and other quality assurance details are available at www.msi.ucsb.edu/Analab.




Because nitrite generally comprised less than 2% of the nitrogen species at these sites, we




treated nitrate + nitrite as nitrate. Daily TSS was obtained from a USGS website (USGS,




2006); it was available for the period from October 1, 1972 through September 30, 1974.





   The Hydrologic Simulation Program - FORTRAN (HSPF),  part of U.S.EPA's Better




Assessment Science Integrating Point and Nonpoint Sources (BASINS) (USEPA, 2001),




was selected to simulate streamflow, TSS, and nitrate for a baseline or reference scenario




and build-out scenarios. HSPF is a comprehensive, conceptual, continuous simulation




model that simulates flow and water quality constituents originating from pervious and




impervious land surfaces, in streams and well-mixed impoundments (Bicknell, et al.,




2001). HSPF uses the PERLND and the IMPLND application modules to represent




processes that occur on pervious and impervious land surfaces, respectively, and it uses




the RCHRES module to represent processes that occur in water bodies. HSPF uses




BASINS to extract soil, land cover, and geomorphological data and parameter values




from geographic information databases, such as the Digital Elevation Model (DEM),




State Soil Geographic (STATSGO) database, and National Land Cover Data (NLCD)




databases, using the BASINS geographic information systems (GIS) analysis tools




(USEPA, 2001). The study watershed was delineated into eight subwatersheds;  each
                                       40

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subwatershed has its own land use, soil, and topography and is considered a




homogeneous hydrological response unit.




   The model uses meteorological data such as precipitation, air temperature, potential




evapotranspiration, solar radiation, wind speed, dew point temperature, and cloud cover.




Our climate data were obtained from the Hatfield Marine Science Center in Newport,




Oregon (www.weather.hmsc.orst.edu), a weather station in Nashville, Oregon, and




BASINS databases. Potential evapotranspiration was estimated from meteorological data




using the Ham on (1961) method.









5.2.2 Model Calibration and Validation





   After necessary input data were prepared, the model was calibrated using historical




streamflow, TSS, and nitrate data corresponding to the baseline. The parameter values




that gave the best calibration results for streamflow, TSS, and nitrate were retained. We




used those parameter values to forecast streamflow, nitrate, and TSS concentrations for




the three build-out scenarios.  The hydrological calibration periods were 1973 through




1977 and 2000 through 2001; the nitrate calibration period was from October 2001




through September 2002; and the TSS calibration period was from October 1973 through




September  1974. We used one year for TSS calibration and the other for TSS validation.




Because both TSS and nitrate are affected by the hydrological calibration performance,




we performed two hydrologic calibrations. One coincided with the period when observed




TSS data were available and the other coincided with the period when observed nitrate




data were available. After successful hydrological, TSS, and nitrate calibrations, the




model was  validated using observed streamflow data from periods that were not used for
                                       41

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model calibration. We employed HSPF calibrations using observed and simulated daily




data, but we also did some monthly and annual calibration comparisons for the baseline




and the build-out scenarios.






5.2.3 Model Performance Evaluation Criteria





   There are no widely accepted quantitative HSPF model calibration criteria to




determine if the model predictions are acceptable; there are, however, some generally




accepted HSPF calibration and validation guidelines. For most HSPF streamflow




calibrations, acceptable model calibration performance is achieved when the correlation




coefficient between monthly simulated and observed streamflow is greater than 0.85




(Donigian, 2002). Because sediment and nitrate calibrations are affected by the




hydrological calibration performance, the TSS and nitrate calibration criteria are far less




stringent than the hydrologic calibration criteria. Donigian (2002) states that HSPF




annual and monthly hydrology, sediment, and nutrient simulations are considered "good"




when the percentage differences between simulated and observed data are between 10




and 15 for flow, between 20 and 30 for sediments, and between 15 and 25 for nutrients.




   HSPF calibration and validation procedures  consist of matching simulated




streamflow, nitrate, and TSS concentrations with observed data. We used goodness-of-fit




measures such as coefficient of determination (R2), root mean square error (RMSE), and




coefficient of model-fit efficiency (E) (Nash and Sutcliffe 1970) to evaluate the model's




performance in predicting observed streamflow, TSS, and nitrate. The coefficient of




determination is written as:
                                       42

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                                                             (i)
where Q0fo is the observed streamflow, Qsim is the corresponding simulated streamflow,

and Qobs and Qsimare average observed and average simulated streamflow, respectively,

and N is the number of data points used in the average calculation. The coefficient of

model fit efficiency can be written as:

          N
         / , \(2obs ~ (2sim )
E=1.0--f - — —                                       (2)
              im ~\iobs>
where E is the Nash-Sutcliffe coefficient and other terms are as defined in (1). The root

mean square error (RMSE) is written as:

             <2ofa-e_)2]05                                 (3)

where Q0fo and Qsim are defined as in (1) and N is the number of data points used for the

comparison period.


5.2.4 Future Build-out Scenario Development

   The sequential nature of urban development projects introduces uncertainties in land

use projections, making it difficult to project changing land use across an entire

watershed. Land use change models that use economic and social drivers can project land

use change. These include the California Urban Futures Model (Landis, 1995) and the

Land Use Evolution and Impact Assessment Model (LEAM)  (Deal, 2001). The LEAM
                                       43

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model forecasts specific land use change projections using watershed-specific drivers,




such as economic, population, social, geography, transport, and open space.




   Our approach can use information from a land use change model, but since land use




change information is not usually available at the watershed scale, we present a simple,




generic method that uses hypothetical build-out scenarios. In areas where information on




future land use change is available from existing zoning and master plans, watershed




managers can use actual land use plans instead of hypothetical scenarios. This allows




resource managers to set an allowable TIA level that corresponds to a watershed's




unknown future build-out. It assumes that a watershed will be developed eventually and




will have a threshold TIA at the end (build-out condition). Build-out is defined as an




estimate of the amount and location of potential development for an area. It is used by




land use planners who evaluate the potential impacts of urban development using build-




out analysis. Generally, build-out analysis, as currently used by land use planners, does




not employ watershed-scale models. The proposed method allows land use planners to set




different impervious area levels for build-out scenarios, and simulate how different




scenarios alter hydrology and water quality. Although there is no limit on the number of




build-out scenarios selected and impacts simulated, in this study we limited our analysis




to three build-out scenarios that correspond with 15, 45, and 85% total impervious levels.




   Table 1 lists the area covered by each land use category and the percentages of TIA




used for the baseline (i.e., pre-development) and hypothetical future build-out scenarios.




The three build-out scenarios correspond to low density residential (scenariolS), high




density residential (scenario45), and commercial development (scenarioSS). Selection of




15, 45, and 85 percent TIA levels is arbitrary and these levels primarily  demonstrate the
                                        44

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model's sensitivity to different levels of imperviousness. ScenarioSS (in particular) was




derived only for comparative purposes since only a few urban watersheds ever reach such




high TIA levels. Impervious area may not reach 85% because some areas of the




watershed are unbuildable due to soil and slope characteristics or are zoned as committed




open spaces. The Ballona Watershed in Los Angles, CA is one of the few watersheds




with impervious cover that reaches 85%. Land use planners should select percent TIA




levels that realistically reflect their future land use plans so they can set threshold TIA




limits for a watershed.




   For each scenario, we kept a minimum of 13 percent of the urban land area as




committed open spaces to include land occupied by detention basins, parks and other




recreational areas, wetlands, and riparian buffer zones. When developing scenarios with




this approach, watersheds can be subdivided, and different TIA levels can be  assigned to




different subwatersheds. Questions to answer are what will be the total allowable




impervious levels at build-out for a watershed and what stressor levels are associated




with different build-out scenarios.






5.2.5 Forecasting Flow, Nitrate, and TSS Alterations





Modeling streamflow, nitrate, and TSS alterations under the three build-out scenarios




makes certain assumptions. For example, calibrated model parameter values obtained




from the baseline condition for each land use category were unchanged when modeling




the altered scenarios. In addition, to forecast streamflow, habitat, and water quality




conditions for the future scenarios, we converted existing pervious forest land to




impervious urban land — but retained the historical precipitation inputs for all simulations




since it is not possible to forecast future precipitation. The baseline and build-out scenario
                                        45

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streamflow, TSS, and nitrate were all simulated for a 30-year (1973 to 2002) period. The




30-year streamflow, TSS, and nitrate projections for the three build-out scenarios reflect




the hydrologic and water quality degradations that would have been observed in the




watershed through 2002 if the watershed had reached 15, 45, or 85 percent urban TIA at




build-out in 1973.




       As already noted, the 30-year simulations assumed that future precipitation and




climate would be similar to those observed over the previous 30 years. In addition, the




HSPF model treated all impervious areas as connected even though, in reality, not all of




them are. This latter assumption can lead to runoff-water and contaminant input over-




prediction because it ignores infiltration that occurs when runoff from an impervious area




passes over an adjacent pervious area.









5.2.6. Linking Stressors and to Impacts





       To project the ecological impacts of urbanization, indicators of urbanization-




induced stressors were derived from forecasted flow data. For each scenario, we derived




indicators from long-term simulated flow, TSS, and nutrient data. For example, indicators




of flow alterations include the indicators of hydrological alterations (IHA) (Richter et al.,




1996), baseflow index, bankfull flow (Ch), and 7Q10. We estimated the baseflow index




using a recursive digital  filter (Eckhardt, 2005); specifically, we examined indicators that




are closely related to peak flow and baseflow changes under the three build-out scenarios.




These indicators can be used to establish cause and effect relationships between




urbanization-induced stressors and changes in abundance, diversity, and fitness of aquatic




communities. To assess the ecological impacts of simulated urbanization-induced
                                        46

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stressors, one can link HSPF to AQUATOX or to the Physical Habitat Simulation model




(PHABSIM), a major component of the Instream Flow Incremental Methodology (IFIM)




(Milhous et. al., 1984). Linking HSPF to aquatic ecosystem models and simulating




ecological impacts of urbanization-induced stressors with AQUATOX AND PHABSIM




is beyond the scope of this study.
                                     47

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5.3 Results and Discussion




5.3.1 Model Calibration and Validation Results





Hydrologic Calibration and Validation. Statistical and graphical visualization




calibration tools available in BASINS were used to calibrate and validate HSPF for the




baseline scenario. Table 2 shows goodness-of-fit measures for the calibrations. For the




two hydrologic calibration periods, the results were within acceptable calibration range:




daily calibrations had coefficients  of determination (R2) of 0.8 and 0.87, and monthly




calibrations had R2 values of 0.91  and 0.95. Validation performance was slightly lower




than that for the calibration. For the two hydrologic validation periods, the R2 values were




0.72 and 0.82 for the daily validations, and 0.83 and 0.89 for the monthly calibrations.




The RMSE and Nash-Sutcliffe Efficiencies (E) values are also provided in Table 2. As




shown in Figures 3a and 3b, simulated streamflow compared well to observed daily




streamflow for both hydrologic calibration periods. All the parameters adjusted as part of




the hydrologic, TSS, and nitrogen  calibrations are listed in Table 3.
                                        48

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Table 2. Model calibration and validation results
             R2    RMSE   E                 R2     RMSE   E
                    Hydrologic Calibration and Validation
              Calibration Period(1973 to 1977)    Validation Period (1977 to 1979)
Daily         0.80   5.8    0.77                0.72   6.4    0.71
Monthly      0.95   2.2    0.94                0.89   3.0    0.87
              Calibration Period (2000 to 2001)   Validation Period (1999 to 2000)
Daily         0.87   3.6    0.82                0.69   7.8    0.62
Monthly      0.91   4.1    0.81                0.83   3.5    0.79
                    TSS Calibration and Validation
              Calibration Period (1973 to 1974)   Validation Period (1972 to 1973)
Daily         0.52   39.36  0.46                0.56   19.1    0.44
Monthly      0.89   11.78  0.82                0.78   7.7    0.59

                           Nitrate Calibration and Validation
              Calibration Period (2000 to 2001)   Validation Period (1999 to 2000)
Daily         0.75   —    —                 0.39   —
                                       49

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Table 3. List of parameter values adjusted during calibration
Parameter
Hydrology
LZSN
UZSN
INFILT
INTFW
IRC
AGWRC
DEEPFR
BASETP
AGWETP
LZETP
CEPSC
Sediment Simulation
KRER
JRER
KSER
JSER
KGER
JGER
KSAND
EXPSND
W (cm/s)
M (kgAtil day)
TAUCD (kg^n2)
TAUCS (kg^n2)
Nitrogen Simulation
KTAM20 (per hour)
KTO220 (per hour)
TCNIT (per hour)
KNO320 (per hour)
TCDEN (none)
DENOXT (mg/1)
Description

Lower Zone Nominal Storage (cm)
Upper Zone nominal Storage (cm)
Infiltration parameter (cm/hr)
Interflow inflow parameter
Interflow Recession Parameter (per day)
Daily recession constant of groundwater flow (per day)
Fraction of groundwater inflow (inactive)
Fraction of E-T from baseflow
Fraction of E-T from active groundwater
Lower zone E-T parameter
Interception storage capacity (cm)

Coefficient-detachment equation
Exponent-detachment equation
Coefficient-detached washoff equation
Exponent-detached washoff equation
Coefficient-matrix scour equation
Exponent-matrix scour equation
Coefficient-sandload power function
Exponent-sandload power function
Fall velocity in still water
Erodibility coefficient
Critical bed shear for deposition
Critical bed shear for scour

Nitrification rates of ammonia
Nitrification rates of ammonia and nitrite
Temperature correction coefficient for nitrification
Nitrate denitrification rate at 20 degrees C
Temperature correction coefficients for denitrification
Dissolved oxygen concentration threshold for denitrification
Calibrated value

20.32
2.36
0.17
6.50
0.70
0.98
0.00
0.00
0.00
0.45
0.51

1.14
1.00
3.00
5.80
5.80
5.20
0.01
3.90
0.14
1.05
2.44
6.35

0.015
0.002
1.50
0.02
1.00
0.50
                                                                   50

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Sediment Calibration and Validation. Suspended sediment concentration calibration




and validation performances generally are impacted negatively by the lack of available




long-term historical data with appropriate temporal resolution. In this study, only two




years of daily TSS concentration data were available for model calibration and validation.




As shown in Table 2, the coefficients of determination (R2) for the sediment calibration




were 0.52 for the daily and 0.89 for the monthly simulations. Sediment validations had




coefficients of determination (R2) of 0.56 for the daily and 0.78 for the monthly




simulations. Graphical comparisons of the observed versus simulated TSS concentrations




indicated that the model slightly under-predicted the higher TSS values, but overall




sediment simulations generally followed the runoff hydrograph trend (Figure 8c). Despite




under-predicting the higher TSS values, overall model calibration and validation




performances for TSS concentrations were acceptable.









Nitrate Calibration and Validation. Nitrate concentration simulation performance




depends on the quality and the quantity of observed data. Observed concentration data




had many missing data points, which created model calibration problems. To address this




problem, we compared observed and simulated nitrate only on days when observed




nitrate concentrations  data were available. Despite using only limited observed versus




simulated comparisons, our nitrate concentration calibrations had coefficients of




determination (R2) of 0.75 for the daily simulations (Table 2). The nitrate validations had




lower coefficients of determination of 0.39 for daily simulations (Table 2). Lack of




continuous observed daily nitrate data at daily (or shorter) time intervals  may have




contributed to the lower model validation performance. Both observed and simulated
                                        51

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nitrate concentrations closely followed the seasonal hydrologic trend, except during the




first winter storm, suggesting that nitrate export from terrestrial areas is strongly




influenced by nitrate build-up and storm wash-out mechanisms (Figure 8d).
                                         52

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                                       Day
                                                                                                Rainfall (mm)
                                                                                                Observed
                                                                                                Predicted
                                                                                                             Day
                                           Day
                                                                                                               Day
Figure 8. Model calibration results: streamflow (a and b), TSS (c), and nitrate (d) calibrations.
                                                                     53

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5.3.2 Forecasting Stressor Levels for the Build-out Scenarios





Forecasting Flow Alterations. Flow alterations for build-out future scenarios show




significant changes as a function of rising percent of TIA levels (Figure 9). To document




these scenario-specific changes, we compared: daily  streamflows simulated for the




baseline scenario to streamflows forecasted for scenariolS, scenario45, and scenarioSS




(Figure 9a); simulated annual water balances for all scenarios (Figure 9b); simulated flow




duration curves at low flow conditions, i.e., for flows with greater than 95% exceedances




(Figure 9c); and simulated flow duration curves at high flow conditions, i.e., for flows




with less than 5% exceedances (Figure 9d). Comparisons of the flow duration curves




show that low flows get smaller with increased percent TIA (Figure 9c) and high flows




get larger (Figure 9d). Comparisons of the annual average water balance components




under the baseline versus the build-out future scenarios for a 30-year simulation period,




using the same historical precipitation data, showed increased surface runoff and




decreased interflow, baseflow, and evapotranspiration for scenariolS, scenario45, and




scenarioSS (Figure 9b).









Peak Flow. The simulation results clearly show increased flow flashiness associated with




increases in percent TIA levels (Figures 4a and 4d); specifically, low intensity storm




events usually did not generate runoff for the baseline and scenariolS, but did so for




scenario45 and scenarioSS. Thus, the baseline and scenariolS were characterized by




smooth runoff hydrographs, whereas scenario45 and  85 exhibited high peak flow rates




(Figure 9a). The data suggest the existence of a threshold percent TIA above which peak




flows greatly increase with increased percent TIA level. In addition, comparisons of flow
                                       54

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duration curves with exceedances less than 5% show small peak flow differences




between the baseline scenario and scenariolS, but relatively large peak flow differences




among the three build-out future scenarios (Figure 9d).









Baseflow and Groundwater Recharge. To examine the effect of increased




imperviousness on baseflow and groundwater recharge, we calculated baseflow index




(BFI) from observed streamflow (historical condition), streamflow simulated for the




baseline condition, and streamflow forecasted for the three future build-out scenarios.




Baseflow indices from the observed and simulated data for the baseline scenario were




0.62 and  0.64, respectively, whereas indices forecasted for scenariolS, scenario45,




scenarioSS  were 0.59, 0.46, and 0.28, respectively. This decreasing BFI trend indicates




how baseflow and groundwater recharge decrease when TIA levels increase.




       To further examine the relationship between  increased imperviousness, baseflow




and groundwater recharge further, we compared flow duration curves for flows with




exceedance probability of greater than 95% for the baseline scenario and for the three




build-out scenarios over 30-years (Figure 9c). These comparisons reveal little difference




between the baseline condition and scenariolS simulations, but show drastic baseflow




reductions for the scenario45 and scenarioSS simulations (Figure 9c). In this report, we




also calculated 7Q10 flow values from streamflow simulated for the baseline, scenariolS,




scenario45, and scenarioSS as 0.16,  0.15, 0.10, and 0.03 nrVsec, respectively.
                                        55

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                        Precipitation (mm)
                        Baseline
                        Scenraio15
                        Scenario45
                        ScenarioSS
                «M  T-   «M
                                    Day
   0.35

    0.3

o  0.25
0)
m
£  0.2
5
5  0.15
ra
£   0.1

   0.05
                                 •Baseline
                                 -Scenario45
ScenariolS
ScenarioSS
          in  in u> u> u>  u>
                                         00  00  00  00  Of)  Of) Of)
          on  of) of) of) of)  of)  of)  of)  of)  of)  of)  of)  of)  of)  of)  of)
                       Percent of Time Flow Equaled or Exceeded
                      1600
                      1400
                      1200
                      1000
                       800
                       600
                       400
                       200
                         0
400
350
300
250
200
150
100
 50
  0
          D Surface runoff (mm)
          D Interflow runoff (mm)
          • Baseflow runoff (mm)
          ID Simulated Evapotranspiration (mm)
          • Water Balance Error (mm)
                                              (b)
                                                                                       Baseline
                                                                                                     ScenariolS
                                                                                                                     Scenario45
                                                                                                                                    ScenarioSS
     • Baseline
     •Scenario45
                                                                                                                             •so
                                                                                                                             •So
                                                                          (c)
                                                                                  5  «
                                                                                  o  o
                                      fe
                                      o
                   858
                                                                                                             IO
                     $   3   8  S  S   2
                     ei   ei   ri  ri  ri   •*
Percent  of Time Flow Equaled or Exceeded
                                                                                                                                        §
                                                                        Figure 9. Hydrologic changes simulated for baseline, ScenariolS, scenario45,
and scenarioSS: (a) daily streamflows, (b) annual water balances (c) flow duration curves at low flow conditions, and (d) flow duration curves at high
flow conditions
                                                                        56

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Forecasting TSS Concentrations. Suspended sediment concentrations forecasted for




scenariolS, scenario45, and scenarioSS over a 30-year simulation period did not yield a




continuously increasing function with percent TIA level. Indeed, our scenario projections




suggest that sediment concentrations are controlled by available sediment supply and by




transport capacity. Specifically, during some elevated flow periods, scenario45




projections had higher TSS concentrations than scenarioSS, even though scenarioSS had




higher simulated flows, thus higher sediment transport capacity (Figure 9b). One




explanation is that there is a TIA threshold value beyond which sediment loads




transported from land surfaces may not increase with increased impervious area. This




implies that when sediment supply is available, scenarioSS would have produced the




highest simulated TSS concentrations because it has the greatest sediment transport




capacity. However, as the landscape becomes increasingly impervious, sediment supply




becomes limited and increases in sediment transport capacity do not translate directly into




increased sediment export.




   An analysis of forecasted daily TSS concentrations for the build-out scenarios




indicates a threshold percent TIA value somewhere between 45 and 85 TIA levels where




increased percent TIA does not translate to increased TSS concentrations. In this report,




we forecasted 30-year average annual sediment loads of 146, 211, 452, and 241 (kg/ha-




yr) for the baseline,  scenariolS, scenario45, and scenarioSS, respectively.









Forecasting Nitrate Concentrations. For the build-out scenarios, the model forecasted




higher nitrate concentrations at low flows and lower concentrations at  elevated flows




(Figure 9a). This is because nitrate simulations are strongly influenced by flow
                                       57

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alterations, particularly baseflow reduction and increase in surface runoff. Conversely, at




baseline condition, higher nitrate concentrations were observed during elevated flow




conditions and lower concentrations at low flow conditions, suggesting that, at baseline,




nitrate accumulates in the upper soil layers during dry periods and is washed out during




wet periods (Figure 9). This observed nitrate build-up - wash-out cycle under the baseline




scenario was severely disrupted by urbanization, which alters the dominant runoff




generation mechanisms and flow pathways.




   Model results simulated for the build-out scenarios show increased nitrate




concentrations during dry periods and lower concentrations at elevated flow periods.




Such interdependence between flow alteration and nitrate concentrations might also




impact soil denitrification processes.  As stated previously, our nitrate projections for the




three build-out scenarios produced nitrate concentrations in the baseflow that increased




with increased percent TIA level. Even ignoring other nitrogen sources, such as lawn




fertilizers and atmospheric deposition, our results indicate that flow alteration alone can




increase nitrate concentrations that may cause eutrophication threats to coastal waters. In




summary, our forecasted 30-year average annual nitrate loads were 13, 14, 16, and 23 kg-




NO3-N/ha-yr for the baseline, scenariolS, scenario45, and scenarioSS, respectively.
                                         58

-------
         •Baseline
            Scenario15
                 •Scenario45  —  — ScenarioSS
           .A*
^    J3
 0&      0&     0&      0&      0&     0&
&    \&    A^     ^     ^      ^
>     \^     ^     ^    ^    ^
     **   Day        <*      <*      ^
  O)

  CO
  P
          •Baseline
                         ScenariolS
                                        -Scenario45
                                                       -ScenarioSS
      300
             •Baseline
                 ScenariolS
                     •Scenario45
•ScenarioSS
Figure 10. HSPF simulated streamflow, TSS, and nitrate concentrations for baseline,
ScenariolS, scenario45, and ScenarioSS
                                          59

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5.4 Determining Ecologically Relevant Urbanization-Induced Stressor
Indicators

   Hydrologic Indicators. Flow alterations have an adverse impact on biological

integrity, but quantifying that impact has been a challenge. Richter et al. (1996) present

indicators of hydrologic alteration (IHA) calculated from observed historical streamflow

data. In this study, we estimated IHAs from simulated streamflow for the baseline and for

the build-out scenarios (Table 4). Simulated magnitude of average monthly flows vary

with the month of year. For some months, the monthly flows decrease with increase in

TIA levels whereas for other months monthly flows decrease with increase in TIA levels.

As the TIA levels increased, model results show a decrease in magnitude and duration of

annual extreme flows for build-out scenarios. Conversely, model results show increased

frequency and duration of average high and low flow pulses as well as increased average

rate and frequency of flow changes (Table 4). Simulated IHAs show that urbanization

does not alter the timing of average annual extreme flows.

   Determining IHA values for build-out scenarios with different percent TIA levels,

and establishing quantitative links between urbanization-induced stressors and their

ecological impacts, are essential to urban ecosystem protection and restoration planning.

Because the amount of water available in a stream defines the suitability of a habitat to

aquatic organisms, flow alteration, especially low flows, creates unfavorable conditions

for native species (Poff et al., 2006). To ensure that sufficient water is available for

aquatic organisms, some states set 7Q10 flow values as an in-stream flow requirement

that must not be violated when issuing water withdrawal permits for irrigation and

municipal water supply.
                                       60

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Table 4. Indicators of hydrologic alteration (IHA) calculated from streamflow simulated for the
baseline and the three build-out scenarios for a 30-year period.

IHA Parameter Group       Baseline      ScenariolS    Scenario45   ScenarioSS

Group #1: Magnitude of average monthly flows (m3/sec)
October                   0.47         0.51         0.41         0.19
November                 4.29         6.16         6.93         5.49
December                11.35        11.04        11.20         6.12
January                   9.91        10.54        10.16         5.40
February                  9.12         9.88         8.00         3.70
March                    8.45         8.52         8.48         5.75
April                      6.20         6.13         4.95         2.35
May                      3.36         3.27         2.14         0.76
June                      1.98         1.85         1.27         0.40
July                      1.14         0.98         0.64         0.19
August                    0.67         0.58         0.38         0.11
September                0.47         0.46         0.29         0.09
Group #2: Magnitude and duration of annual extreme flows (m3/sec)
1-day minimum            0.32         0.27         0.18         0.05
3-day minimum            0.32         0.28         0.18         0.05
7-day minimum            0.33         0.31         0.20         0.06
30-day minimum           0.42         0.47         0.37         0.13
90-day minimum           0.76         0.90         0.98         0.87
1-day maximum           67.60        84.61       117.06       172.90
3-day maximum           50.60        57.54        73.07        94.16
7-day maximum           39.00        41.70        47.59        60.54
30-day maximum          21.65        22.59        24.86        29.65
90-day maximum          15.11         5.81        17.90        21.03
Days with zero flow         0.00         0.00         0.00         0.00
Base flow index            0.05         0.043        0.02         0.01
Group #3:Timing of annual extreme flows (Julian Day)
Date of minimum         277.00       277.00       275.00       275.00
Date of maximum        347.00       338.00       338.00       338.00
Group #4: Frequency and duration of average high and low pulses
Low pulse count 1 .00
Low pulse duration 62.25
High pulse count 8.50
High pulse duration 8.50
Low Pulse Threshold 30.65
High Pulse Threshold 288.00
Group #5: Rate and frequency of flow
Rise rate 30.75
Fall rate -2.53
Number of reversals 64.00
8.00
5.75
14.00
3.00
32.30
307.00
changes
98.75
-6.45
111.50
9.00
5.00
27.50
2.00
22.20
327.00

239.10
-6.42
119.00
8.00
5.50
35.00
2.00
7.50
310.00

445.00
-5.35
121.00
                                      61

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   Hydraulic and water quality indicators. High peak flow rates associated with high




percent TIA levels cause high flow velocities and associated shear stresses that move




sediments (Poff et al., 2006), and displace benthic invertebrates (Poff and Ward, 1991),




and small fish (Harvey, 1987). High shear stresses also increase the depth of scour of bed




sediments to induce higher mortality of benthic invertebrates (Palmer et al., 1992;




Townsend et al., 1997). To forecast the risks of increased stream channel erosion, we




used Ch,  often referred to as the bankfull flow or channel forming flow, which




corresponds to a 2-year return period. Wolman and Miller (1960) reported that flows with




1 to 5 year return periods are important to stream geomorphology because these flows




move sufficient amounts of sediment. To forecast the impacts of urbanization on




streambank erosion, we examine how different build-out scenarios alter the frequency of




bankfull  or channel forming flows (Ch). Using Ch as an indicator of increased channel




erosion, we forecasted the number of times the baseline scenario Ch flow value was




exceeded by Ch flows forecasted for the three build-out scenarios. We found 22, 91,  and




274 days with flows greater than the baseline scenario Ch for the 30-year projections for




scenariolS, scenario45, and scenarioSS, respectively.




   Establishing stressor-response relationships between changes in shear stress and  Ch




values under future build-out scenarios and their impacts on aquatic organisms is key to




developing biologically relevant indicators. Although some stressor indicators may have




biological relevance, additional field research is needed to establish cause-and-effect




relationships between stressor indicators and ecological responses.




   The HSPF model simulates many physical habitat variables closely related to channel




hydraulic geometry. To establish links between forecasted habitat variables and the health
                                        62

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of aquatic ecosystems, we propose the use of habitat models such as the Physical Habitat




Simulation model (PHABSIM), a major component of the Instream Flow Incremental




Methodology (IFIM) (Milhous et. al., 1984), and ecological models such as AQUATOX.




We suggest importing HSPF forecasted habitat variables and stressors, such as scenario-




specific simulated hydraulic, temperature, nutrient, and contaminant data, as inputs into




the PHABSIM and AQUATOX models to compute the impact these stressors have on the




health of aquatic ecosystems.




   Comparisons of simulated flow velocity for the baseline scenario to velocities




forecasted for the three build-out scenarios indicate significant baseflow velocity




reductions with increasing percent TIA level (Figure 10).  For instance, scenarioSS, which




has the highest percent TIA, had the lowest baseflow velocity, followed by  scenario45




and scenariolS. The baseline scenario, with the lowest percent TIA, had the highest




baseflow velocity. As presented earlier, the flow velocities fluctuated between baseflow




and peak flows within each scenario. However, these fluctuations increased with increase




in percent TIA; such that peak flows and baseflows had an inverse order relationship to




percent TIA; that is,  scenarioSS had the highest peak flows followed in order by




scenario45, scenariolS, and baseline.
                                       63

-------
                                                            Baseline
                                     Day
        • Baseline
                         Scenario16
                                           Scenario46  —»—Scenario86
  *•*•
  I
  I
36

30

26

20

16

10
              • Baseline
                           • Scenario15
                                            • Scenario45
                                                            • ScenarioSS
        1.6
        1.4
        1.2
         1
        0.8
        0.6
        0.4
        0.2
         0
                                        Day
Figure 11. HSPF simulated 30-year mean water temperature (a), water surface width
(b), and flow velocity (c) for baseline, scenariolS, scenario45, and scenarioSS.
                                       64

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6 CONCLUSION




   Controlling nonpoint source pollution requires the use of integrative modeling




approaches that simulate the interactions among integrated stressors. However, current




models and modeling approaches cannot represent integrated stressors and many




available models do not match the complexities of the system that is modeled. Only a




very few watershed models can represent the various hydromodification types and




scenarios and can simulate scenario-specific flow alterations and water quality




degradation. In this report, we present a modeling approach that is suitable for assessing




how hydromodification projects alter natural flow regimes and degrade water quality.




The proposed B ASINS-based modeling framework enables resource managers to select




alternative future scenarios, simulate scenario-specific stressors, and select scenarios that




minimize the impacts of hydromodification on water quantity and quality.




   Urbanization has been closely linked to the degradation of aquatic ecosystems.




Methods to quantify urbanization-induced stressors from future development scenarios




have not been generally available. In this study, we present an application of a method to




forecast urbanization-induced stressors and discuss ways to develop indicators that link




stressors to their ecological impacts. The proposed approach will enable land use




planners and resource managers to forecast urbanization-induced stressors from




forecasted streamflow and water quality data. Forecasted urbanization-induced stressors




include flow alteration (e.g., altered peak flows and baseflows), water quality degradation




(e.g., increased nitrate and TSS concentrations), and geomorphic or habitat alterations




(e.g., changes in flow depth, wetted surface width, and flow velocity).
                                        65

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    The ultimate utility of the proposed forecasting approach depends on successfully




developing ecological response indicators that capture the responses of aquatic




ecosystems to the stressors of concern. Ecological response indicators can be derived




possibly from data on changes in native species richness or on the composition and




functional organization offish and invertebrates.




    Future research should focus on developing ecological response indicators that




quantitatively reflect aquatic biota responses to forecasted stressors. Specifically, such




research should assess the effects of single or integrated stressors on the abundance,




diversity, and fitness of aquatic communities. Future modeling in this area ideally will




also simulate how different best management practices moderate the ecological effects of




urbanization to restore important ecological services and functions.
                                         66

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