Ecological Condition of
Lakes in Idaho, Oregon,
and Washington

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   Ecological Condition of Lakes in Idaho, Oregon, and Washington
                          EPA Region 10 Report
Authors:
L.G. Merger, P.T. Leinenbach, and G.A. Hayslip
December 2010
U.S. Environmental Protection Agency, Region 10
Office of Environmental Assessment
1200 Sixth Avenue, Suite 900
Seattle, Washington 98101
Publication Number: EPA-910-R-10-001
Suggested Citation:
Merger, L.G, P.T. Leinenbach, and G.A. Hayslip.  2011.  Ecological Condition of Lakes
in Idaho, Oregon, and Washington.  EPA-910-R-10-001. U.S. Environmental Protection
Agency, Region 10, Seattle, Washington.
This document is available at: http://yosemite.epa.gov/r10/OEA.NSF/Monitoring/Lakes/

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                                                   Region 10 Lakes Assessment
Table of Contents
   Acknowledgements	iv
   Abstract	iv
   Purpose	1
   Introduction	1
   Overview of Lakes Ecological Assessment	2
       A.  Survey Design	2
       B.  Lake Selection and Extent of Evaluation	3
       C. Description of Region 10 Sample Lakes	4
       D.  Aquatic Stressor Indicators	7
       E. Landscape Indicators	9
   Assessment Thresholds	9
       Numeric Thresholds	9
       Reference Condition	9
   Methods	10
       A.  Quality Assurance	10
       B.  Field Sample Collection	11
       C.  Landscape Data Methods	12
   1. Biological Condition	14
   2. Water Quality and Trophic State	16
       A.  Water  Quality	16
       B. Trophic State	19
   3. Physical Habitat Stressors	21
   4. Suitability for Recreation	24
       A. Algal toxins	24
       B. Pathogens	26
       C. Contaminants in Fish Tissue	27
   Summary of Findings: ranking stressors	27
   Recommendations	29
   References	31
   Appendix 1. Sampled Lakes in Region 10	33
   Appendix 2. Analysis of Landscape Metrics	36
       Introduction	36
       Objectives	36
       Identifying Best Metrics	36
          Methods	36
          Results	37
       Indicator Development	40
          Methods	40
          Results	43
       Future Work	43
   Appendix 3. Additional Nutrient Analysis for Region 10 NLA Lakes	48
   Appendix 4. Fish Tissue—Region 10 results from 2004 National Lakes Fish Tissue
Survey	58

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                                                     Region 10 Lakes Assessment
List of Figures
Figure 1. Fate of lakes available from NHD for use as target sample. Lake criteria
requirements and screening for sampleablity yields inference population of 1,700 lakes.
	4
Figure 2. Description of sampled lakes by aggregated Level 3 Ecoregion and by
Ownership	5
Figure 3. Sample lakes in each size category (N=90)	6
Figure 4. Proportion of inference lakes (1700) within each lake origin category
compared to proportion when weighting is not applied (90 sampled lakes)	7
Figure 5. Diagram of sampling locations within each lake	11
Figure 6. Example of lake contributing area with sample cover classes and illustration
of four buffers distances, entire watershed, 5km, 2km and 200m, in which each cover
attribute was calculated (Smith reservoir,  Oregon)	13
Figure 7. Region 10 lakes in good, fair, poor, no data, and not assessed condition
classes for the plankton community 0/E and sediment lake diatom condition (LDC)
indicators of biological condition	16
Figure 8. Lakes in good, fair, poor condition classes for total phosphorus and nitrogen.
	18
Figure 9. Lakes in good, fair, poor condition classes for turbidity	19
Figure 10. Percentage of inference lakes in each of four trophic categories based on  20
Figure 11. Percent of lakes in four trophic classes based on TSI thresholds for
chlorophyll-a	21
Figure 12. Lakes in good, fair, poor condition classes for lakeshore habitat and shallow
water habitat	23
Figure 13. Lakes in good, fair, poor condition classes for habitat complexity and
lakeshore disturbance	24
Figure 14. Lakes within low, medium and high risk categories for algal toxin exposure
based on cyanobacteria cell counts and chlorophyll-a concentration	26
Figure 15. Relative extent of poor stressor condition across all stressor metrics for all
Region 10 lakes	28
Figure 16. Relative extent of poor stressor condition across all stressor metrics for
natural lakes and man-made lake categories	29

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                                                    Region 10 Lakes Assessment
List of Tables
Table 1.  Description of Indicators used to evaluate lake condition	8
Table 2.  Summary of field data collection protocols	12
Table 3.  Summary of landscape metrics used for comparison to lake condition	14
Table 4.  Water quality summary statistics for Region 10 lakes' inference population
(-1700 lakes)	17
Table 5.  Carlson Trophic State Index (TSI) parameter thresholds	20
Table 6.  World Health Organization's recreation indicator thresholds of risk associated
with potential exposure to algal toxins	25
Table 7.  Results of ranking Region 10 data by Enterococcus concentration categories.
Samples collected from 88 sites (inference population =1694)	26
List of Maps
Map 1. Locations of sampled lakes in the Coastal/Mountain	5

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                                                   Region 10 Lakes Assessment
Acknowledgements
This project was completed with the help of numerous individuals and agencies.  EPA's
Office of Water was responsible for  data management including quality assurance,
metric calculations, data analyses, and generation of condition class indicators.  This
work was accomplished collaboratively with EPA's Office of Research and Development
(ORD),  Corvallis,  OR,  and scientists from other agencies and  organizations. ORD
scientists,  Phil Kaufmann,  David Peck,  John Van Sickle, and Tony Olsen, provided
advice on this reporting of the Region  10 data. We also thank Alan Herlihy and Thorn
Whittier, Oregon State University, for their helpful advice. Field data in Region 10 were
collected by state environmental monitoring departments:   Idaho  DEQ, Oregon DEQ,
and  Washington  Ecology.    Jason  Pappani  and  Mary Anne  Kostermann,   Idaho
Department  of Environmental  Quality,  Shannon  Hubler,   Oregon  Department  of
Environmental Quality, and Maggie Bell-McKinnon, Washington Department of Ecology
were our state collaborators and were critical to the success of the  Region 10 portion of
this national survey.   Scott Fields (Coeur d'Alene Tribe)  and Maggie  Bell-McKinnon
contributed cover photos.
Abstract
The  Environmental  Protection Agency (EPA)  in collaboration with  state agencies
conducts monitoring of various aquatic resources to answer questions on the condition
of the  Nation's waters.  This series of surveys is conducted  under  EPA's National
Aquatic Resources  Surveys  (NARS)  program.   These  surveys  employ a statistical
design that makes it possible to describe the quality of the resource across the Nation in
terms of good, fair or poor condition relative  to a  reference condition or numeric
standards.  In addition, the extent of human disturbance can be described in relation to
geographic variations.

The NARS program initiated  a survey of lakes called the National Lakes Assessment
(NLA).  Data were collected for this assessment from 1,028 lakes across the contiguous
United States in summer 2007.  This report uses a subset of the data from  this larger
project to assess the ecological condition of the lakes of the EPA Region 10 states of
Idaho, Oregon, and Washington (subsequently referred to as Region 10). A total of 90
lakes were sampled in Region 10.  In general, most lakes in the Region are  in good or
fair condition based on the results of the indicators analyzed.  The most widespread
stressors are physical habitat  quality of the lakeshore and shallow areas, and  nutrients.
                                      IV

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                                                    Region 10 Lakes Assessment
Purpose
Lakes are an important aquatic resource in the Pacific Northwest Region. Monitoring of
lakes by the states within EPA Region 10 is limited and there are no programs that
survey lakes for the purpose of state-wide assessment. This ecological assessment of
lakes in Region 10 has three purposes:

   •  Report on the ecological condition of lakes using direct measures of biological
      assemblages.

   •  Identify and rank the relative importance of stressors affecting lake condition by
      using measures of chemical, physical and biological habitat to determine how
      wide-spread/common these stressors are.

   •  Conduct preliminary analysis of landscape metrics derived from remotely sensed
      data that may be useful for assessing regional lake  condition.
Introduction
The EPA conducts nation-wide ecological surveys of aquatic resources to evaluate their
status  and to examine associations between ecological condition  and natural  and
anthropogenic influences. These National Aquatic Resource Surveys (NARS) are based
on the premise that the  condition  of aquatic biota can be  determined by examining
biological response indicators and ecological indicators of stress.  The long-term goal of
NARS  is to directly measure environmental  resources to determine  if  they are in an
acceptable or unacceptable  condition relative to  a set of environmental or ecological
values. Two major features of these surveys are the use of ecological indicators  and
probability-based selection of sample sites.

An  ecological assessment can be performed in a variety of ways ranging  from a
description of the extent of a  resource  to  an enumeration  of the abundance  and
distribution of biota in an ecosystem. The ecological assessment of lakes in Region 10
described in this  report evaluates critical  stressors related to  water quality, biological
condition, physical habitat condition, and recreation.  Two critical components of aquatic
ecosystems are: 1) the condition of the biota, and 2) the relative importance of human-
caused stressors.

The first component of this ecological assessment is based  on the fact that biological
communities are adapted to local habitat (the combination of  physical, chemical,  and
spatial  elements) and therefore the ecological condition  of lakes  is reflected by the
quality  and health of the biotic communities.   Essentially,  the  biotic communities
integrate  the  many  human disturbances  that  we  are  interested  in  assessing.
Maintaining the biotic communities  is also one of the pillars of the federal Clean Water
Act ".... [Supporting and maintaining a  balanced, integrated,  adaptive community of

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                                                     Region 10 Lakes Assessment
organisms  having  a  species  composition,  diversity,  and  functional organization
comparable to that of the natural habitat."

The second component of this assessment evaluates ecological stressors.  Stressors
are defined as the pressures or disturbances  exerted on aquatic systems.  These are
the chemical,  physical, and biological components of the ecosystem  that have the
potential to degrade the biotic  integrity of  the  aquatic system.   This ecological
assessment will identify stressors and describe their spatial extent.

The National Lakes Assessment (NLA) was a  two-year effort to collect data from lakes
across the  United States  and to report on their ecological condition at a national scale
(USEPA 2010). Consistent field,  lab, and data analysis methods were used across the
country and across lake  types.  All sites were selected using a probabilistic design.
Collectively, the sites are  a statistical representation of the target population of lakes of
the United States.

This Region 10 report uses a subset of the data analyzed for the NLA to describe the
condition of the lakes in EPA Region 10.   Region 10 has  previously reported the
ecological condition of other aquatic resources  including rivers, streams and estuaries in
Region  10  using this same approach (Hayslip  et al. 2006, Merger et. al. 2007).  This is
the first time  extensive  data have  been  available  for reporting  on the ecological
condition of lakes across Region 10.
Overview of Lakes Ecological Assessment
A. Survey Design

Assessing a very large and diverse area requires a study design that can adequately
capture the variation across the landscape and be descriptive of the entire ecological
resource of lakes in the  Region.   There are various options  for collecting  data to
describe the ecological condition of this 'target population'.  A census method, where
data are collected from every lake, is impractical (if not impossible). This survey used a
sample approach similar to a public opinion poll where data are collected from a subset
of the  target lakes.  This  information is then used to determine characteristics of the
greater target  population.   The sample sites are selected using a probability-based
sampling  method to insure that they  are  statistically  representative of the target
population.  In a probability sample, every lake of the target population has  a known
non-zero probability of being selected.   This feature has two advantages in that it 1)
prevents site  selection  bias  and  2)  allows  statistically valid  inferences describing
characteristics of the entire target population to be made.

The  target  population  was sampled  in a  spatially-restricted  manner  so  that  the
distribution of the sample  sites has  approximately the  same spatial distribution as the
target population. This was achieved by using an unequal probability sample method to
ensure  distribution  of samples of sites  by  size, State, and major  ecoregion  types

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                                                     Region 10 Lakes Assessment


(mountainous/humid v. xeric). For example, in this study large lakes were given higher
probability of being selected for sampling than small lakes.  This effectively increases
the probability of having large lakes selected for the sample so that the sample is not
dominated by the small  lakes, which are much more common in the landscape. This
variable selection probability by lake size  is accounted for when making the regional
estimates by using site weighting factors.  Each site is assigned a weight, based on the
occurrence of its type in the Region.  Small lakes have a smaller weighting factor than
large  lakes.   Therefore,  any inferences based on the un-weighted set of sites to the
entire target population are inaccurate.
B. Lake Selection and Extent of Evaluation

The sample frame for this study was all lakes, reservoirs, and ponds that are permanent
waterbodies within Oregon, Idaho, and Washington that have the following
characteristics:

   •  surface area > 4 ha (10 acres)
   •  > 1000m2 open, unvegetated, water surface area
   •  > 1  meter depth
   •  excludes 'working'  lakes meaning those used for aquaculture, tailings disposal,
      active borrow pits, sewage treatment, evaporation, etc.
   •  excludes saline coastal waterbodies and those under tidal influence
   •  excludes flowing waterbodies such as 'run of the river' reservoirs

The data  used to generate  this set  of lakes was  the National Hydrography  Dataset
(NHD), which is a set of  CIS layers.  For Region 10, this dataset consisted of 11,340
lakes, reservoirs and ponds  with at least four hectares of  surface area.  This dataset
was screened using the criteria  described above which resulted in a set of 3,423 lakes
considered the target population for Region 10.

Sample lakes were selected randomly from the target population in proportion to their
occurrence within five size categories (Overton et al.  1990, Stevens and Olsen 2004).
A final evaluation was conducted to ensure each  lake was  accessible and satisfied the
criteria for inclusion as a target lake.  For this project, accessible meant that 1) they did
not have  safety issues that  would prohibit sampling, 2)  they were not excessively
remote,  and 3) that landowners would grant access.

In  Region  10, a total of 90 lakes were slated for sampling.  As lakes were selected from
the design list of eligible  lakes (those meeting the target criteria), many were rejected
due to access denial or inaccessibility.  Almost 50% of the eligible lakes were rejected
before the final 90 lakes were  selected.   These  90 lakes represent  the  "inference
population" of 1,700 (49.7 %  of the original target  population). Results in this report are
presented in relation to this inference population.  For example,  if an indicator has poor
condition in 10%  of the  lakes this means  that 170 lakes in the Region are in  poor
condition (Figure 1).

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                                                      Region 10 Lakes Assessment
                  Target Population = 3,423 lakes
                                      Target sampled = 1,700
    Inference Population = 1,700 lakes
         Sampleable = 1,700
Figure 1.  Fate of lakes available from NHD for use as target sample.  Lake criteria requirements and
screening for sampleablity yields inference population of 1,700 lakes.
The  process used to select sites allows for unbiased estimates of condition indicators
with  known  statistical  confidence.  Error bars on the graphs in this report express the
uncertainty of the population estimates at the 95% confidence level.  For example, an
estimate of poor biological condition of 40% with an error bar of +/-10% means there is
95% confidence that the true value is between 30% and 50%.

Error bars  of  5-15%  would  be expected for this type  of  ecological assessment.
However, In Region  10,  error bars tended to be rather  large  (approximately 20%)
depending on the indicator.  One explanation for the large error bars in the Region is the
heterogeneous  landscape and lack of consistent lake size in the Region. Further, the
variance is calculated spatially meaning that variances are all based on each site and its
three closest "neighbors"  in geographic space. If sites have neighbors  with large site
weights,  meaning they are rare  in terms  of size (big lakes), then larger local variance
estimates will result.  If there are areas with no or very few lakes, nearest neighbors
may be far apart, or at different elevations. The spatial variability in distance between
lakes, elevation, and variation in lake size results  in the increased error in the region
compared to areas with  more homogeneous  lake size by elevation (e.g.  Minnesota,
Wisconsin) and compared to the  nation-wide assessment error (USEPA 2009a).
C. Description of Region 10 Sample Lakes

The  Pacific Northwest ecosystem has  diverse physiological,  climatic, and floral and
faunal  characteristics as  evident  by the inclusion of all or  portions of 11 different
ecological regions (ecoregions) within its boundary (USEPA 2003, Omernik 1987). The
diversity of the contiguous portion of Region  10  includes large expanses  of high dry
plateau,  steep mountains, and  forested areas. The Region  has two major climatic
regions, xeric and mountainous areas.  The xeric portion of the basin is represented by
the Columbia Plateau, North Basin Range, and Snake River Plain ecoregions. The land

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                                                      Region 10 Lakes Assessment


area categorized as xeric is a substantial portion of the PNW (shown in brown on Map
1).   The remaining ecoregions comprise the  mountainous climatic region (shown  in
green).
.       •*;

                                   ^Probability

                                   ^Hand-picked
Map 1. Locations of sampled lakes in the Coastal/Mountain
west (green) and Xeric (brown) ecoregions in Region 10 states
of Oregon, Washington, and Oregon.
The location of the 90 randomly selected sample lakes used to represent the inference
population of 1,700 lakes are shown on Map 1 and are listed in Appendix 1. Nearly
three quarters of the sampled lakes are within the coastal/mountains ecoregions, and
most are in public ownership (Figure 2).
                                                private
                                                 18%
                                     tribal/public
                                         1%
                                                                     public
                                                                      75%
Figure 2. Description of sampled lakes by aggregated Level 3 Ecoregion and by Ownership.

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                                                     Region 10 Lakes Assessment


Lakes from five size categories of open water surface area were included in the sample.
The  90 sample lakes were relatively equally distributed between  the three mid-sized
categories (Figure 3).
         4-10  10-20 20-50  50-100  >100

               surface area (ha)
Figure 3. Sample lakes in each size category (N=90).
Each lake sampled in the smallest size class represents a proportionately larger number
of lakes in the PNW states due to  the far larger number of small lakes present in the
three-state region relative to larger size classes.  Thus, these small lakes carry a larger
'weight' in the survey.  The sample design forced  the inclusion of large sized lakes in
the sample.  Because of the proportionately larger number of small  lakes a completely
random sample without this 'forcing' would result in a dominance of small lakes in the
sample, making it difficult to draw inferences for large lakes.

Applying the assigned weights to the sample lakes results alters the  proportion of lakes
within  the man-made versus  natural categories that  will be  represented by  the
assessment results.   The inference  population has 33% of lakes in the man-made
categories (including reservoirs), versus 43% in  the 90 lakes actually sampled (Figure
4).  Similarly the proportion of lake distribution among ecoregions differs once weights
are applied: about 8% (114 lakes) of the inference  lakes are within the xeric portions of
Region 10 compared to 28% of the 90 sampled lakes.

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                                                       Region 10 Lakes Assessment
 Reservoir
    7%
                                                 Man-
                                                 made
                                                 20%
Natural
 67%
Reservoir
  23%
                                                                           Natural
                                                                            57%
Figure 4.  Proportion of inference lakes (1700) within each lake origin category compared to proportion
when weighting is not applied (90 sampled lakes).
D. Aquatic Stressor Indicators

Characterizing the ecological condition of lakes is complex due to their dynamic nature.
Ecological indicators must be carefully selected so  that they robustly represent the
important aspects of lake quality.  In order to  thoroughly characterize lakes, indicators
were selected to assess four major aspects of lake ecological characteristics. These are
biological condition, water quality and  trophic state,  physical habitat condition, and
recreation suitability.  This report examines the most relevant metrics for evaluating the
stressors affecting the ecological condition.   The four categories  of  lake condition
indicators and the specific indicators examined in this assessment are summarized in
Table!

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                                                          Region 10 Lakes Assessment
Table 1.  Description of Indicators used to evaluate lake condition.
Indicator
Why important
Metrics of assessment
1. Biological Condition
Plankton: floating microscopic rganisms
includes: zooplankton ( invertebrates)
and Phytoplankton- algae
Sediment diatoms — microscopic algae
with silicon cell walls that are preserved
in lake sediments
Responds to stressors of nutrient
enrichment and turbidity. Responses
can be quantified through changes in
species composition and abundance.
Diatom species have specific
requirements of alkalinity, total P,
conductivity, etc.
Taxa loss (O/E) model
develop for the combined
presence of zooplankton
and phytoplankton
Diatom condition index
(LDC) based on diatom
assemblage in surface
sediments
2. Water Quality and Trophic State
Nutrients: total phosphorus (P) and total
nitrogen (N)
Dissolved oxygen
Water clarity-Seech i transparency depth
and turbidity measurement
Chlorophyll-a- photosynthesizing
pigment is a measurement of algal
biomass
P and N are required for primary
productivity. Excessive nutrients
negatively affect lake function.
Essential for support of aquatic life.
Organisms have differing
requirements for optimal growth.
Water clarity is an indirect measure
of algal growth and suspended
solids.
Indicates level of primary productivity
and is used to estimate trophic State.
Reference condition
comparisons and numeric
thresholds
Numeric thresholds from
the literature
Reference condition
comparisons and numeric
thresholds.
Comparison to reference
condition
3. Physical Habitat Condition
Littoral habitat — forms the interface
between terrestrial and aquatic
environment. Metric of cover features
Lakeshore habitat (terrestrial nearshore
area and shoreline zone)-metric of
vegetation structure and complexity
Physical habitat complexity — combines
littoral and lakeshore habitat metrics
Human disturbance- extent of human
activities in proximity to the lakeshore
Important area of nutrient inputs and
aquatic habitat. Area commonly
altered by human activities.
Area where human disturbance can
have the most effect on a lake.
Used to assess overall habitat
structural complexity and integrity.
Alteration of habitat by humans can
affect biological integrity.
Comparison to reference
condition
Comparison to reference
condition
Comparison to reference
condition
Comparison to reference
condition
4. Recreation Suitability
Cyanobacteria cell counts-class of
algae that produce algal toxins
Chlorophyll-a density- indicator of
presence of all algae
Microcystin -an algal toxin produced by
some cyanobacteria
Enterococci-bacteria of animal intestinal
tracts (including humans)
Fish tissue contaminants
Indirect indicator of presence of
algae that could produce toxins.
Indirect indicator of presence of
algae that could produce toxins.
Direct measure of microcystin which
is harmful to humans and wildlife.
Direct measure of bacteria.
Bioaccumulative and persistent -
these are harmful to fish consumers.
Numeric thresholds from
the literature
Numeric thresholds from
the literature
Numeric thresholds from
the literature
Relative ranking
Numeric thresholds from
the literature
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                                                    Region 10 Lakes Assessment
E. Landscape Indicators
Landscape metrics that describe the physical conditions of watersheds were calculated
for the watersheds of each lake using a Geographic Information System (CIS). These
indicators are useful for describing the type and quantity of human disturbance that can
influence lake condition.  We analyzed these indicators to explore which ones are most
related to stressor indicators generated from the lakes data and to examine the buffer
widths that were most useful for these various types of landscape indicators. This is an
exploratory analysis of Region 10 data as  landscape  metrics were not used  in the
National Lakes Survey.
Assessment Thresholds
Numeric Thresholds

For some indicators, values in the literature were available to evaluate lake condition.
These thresholds are well established and are widely used and accepted.  Dissolved
oxygen levels were compared to EPA national recommendations.  Lake trophic state
was determined by comparing lake water quality metrics to the Trophic State Index
developed  by  Carlson  (1977 and  1983).   Finally, the survey  results  for recreation
indicators are  compared to  recommendations from the World  Health  Organizations
(WHO) that are  used to rate lake quality.
Reference Condition

Numeric condition  threshold  values  were  either  not  available  or  applicable  for
determining  many of the biological and  physical habitat conditions,  and some of the
water quality conditions for this lakes survey.   In  order  to describe the ecological
condition of the  lakes of Region 10, we must have an expectation of the ecological
condition in a relatively 'undisturbed' state. This benchmark for determining ecological
condition is commonly referred to as the 'reference  condition'.  A reference condition
can have many meanings.  For instance, it could mean a 'pre-settlement condition', a
'desired condition', or an 'acceptable current condition' that implies  some level of human
disturbance.  Setting reasonable expectations for each of the indicators  of ecological
condition  is therefore  a challenge.   For this  assessment,  reference condition  is
developed from the analysis of carefully selected sites that represent the best attainable
or 'least disturbed' watershed condition,  habitat structure, water quality and biological
parameters  (Hughes  1995,  Stoddard et  al.  2006).  Deviation  from the  reference
condition is a measure of the effect of stressors on the ecosystem.  A site is considered
to be in 'good' condition if it  is in the  condition we would expect to see if it were
minimally  exposed to the stressors of  concern  (i.e.,  if it  is equivalent to  reference
condition). Thus, 'good' condition is defined relative to our expectations for a particular
system rather that against an absolute benchmark of ecosystem attributes (Bailey et al.
2004).

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                                                    Region 10 Lakes Assessment
The  diversity of physical, chemical, and biological characteristics of the lakes of the
Pacific Northwest states  must be considered when  defining reference  condition and
calculating lake ecological condition. For example, a lake with finer-sized substrate and
low  shoreline  vegetative structure  may  be typical  of an  undisturbed  lake  in one
ecoregion while those same characteristics may represent a more disturbed condition in
a forested/mountainous ecoregion.  Because ecoregions have similar characteristics in
terms of soil, climate, geology, and vegetation, it follows that the lakes of an ecoregion
would have  similar stressors  as well as similar responses to those stressors.  Thus,
ecoregions provide a template for refining the expected condition of lakes throughout a
broad and variable area.

Reference sites came from two sources: 1) a set of lakes  that were handpicked for
sampling based on input from the  state resource managers and 2) a set of lakes from
within the greater National  Lakes Survey probability lakes dataset.  The  handpicked
sites were selected as being lakes in a minimally disturbed condition based on best
professional  judgment of state lake survey coordinators.  In Region 10, 11  of these
handpicked  lakes were sampled in the three states (see Map  1).  After data were
collected from  all probability and hand-picked sites, the dataset was screened to select
sites in a least disturbed condition based on  landscape data interpretation.  This subset
of lakes  was  further screened to include  only those where the water  quality was
considered to be in good condition  based on  phosphorus, nitrogen, chloride, and sulfate
concentrations. From this two step process  a subset of reference lakes were identified
from the probability dataset.

The  reference lakes were used by  EPA's Office of Water  and Office of Research and
Development (ORD) to generate condition metrics for the various indicators. Technical
details on the  development  of each of these condition indicators will not be discussed
here but can  be found in  EPA's  Technical Appendix  (EPA 2010).  The Technical
Appendix details the data analysis  and development of metrics and condition indicators
that are reported in this assessment.
Methods
A. Quality Assurance

All data collected and generated for this report followed the Quality Assurance Project
Plan (QAPP) developed for the NLA (USEPA 2009b). The QAPP addresses all levels
of the program, from collection of field data and samples and the laboratory processing
of samples to standardized/centralized data management.  Numerous crews conducted
field sampling.  Consistency and adherence to the field protocols (USEPA 2007) was
insured by crews participating in training sessions, and field  audits conducted by EPA
Region 10 personnel early in the field season.  Also,  10% of the sites were re-sampled
to provide estimates of the variability of the metrics.
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                                                          Region 10 Lakes Assessment
B.  Field Sample Collection
Field data were collected during the summer growing period ('index period').  In Region
10, the sites were sampled between June and August. Field sampling was conducted at
both the deepest point in the lake and at stations along the shoreline (Figure 5).  The
deepest location, termed the X-site, is where  most  indicators were  collected including
water chemistry, chlorophyll-a, phytoplankton, zooplankton, sediment diatoms, and algal
toxins samples.   Ten 'physical  habitat'  stations were established along the shoreline
equidistant from  one another  with the location  of the first site selected randomly.
Physical  habitat  and  benthic  macro-invertebrates were collected at each of  the ten
stations and the enterococci sample was collected at the last station.  These physical
habitat stations were not established at large  lakes  (greater than 5,000  hectares) and
physical  habitat  data and benthic invertebrates were not  collected  at those water
bodies.  The enterococci sample was collected near the boat launch site for these big
lakes. A summary of field sampling protocols is shown in Table 2 and further details on
field  methods  and  sample  preservation  and  handling  can  be  found  in the  field
operations manual (EPA 2007).
Littoral zone - benthic sampling area

 Sub-littoral zone


Profundal zone
                                                              Observation station
                                                              positioned 10m
                                                              offshore for sampling
                                    Index site
                              deepest point - chosen using
                              bathymetric map and/or sonar

                                     X
                                •Water chemistry
                                •Chlorophyll a
                                •Phytoplankton
                                •Zooplankton
                                •Sediment diatoms
                                •Algal toxins
                                                                        All stations equidistanl
                                                                         from one another
                                                        Physical habitat and benthic
                                                         sampling stations (A-J) -
                                                          Starting point randomly
                                                            selected a priori
                                                         Habitat and benthic sampling station
                                                                   15m
                                                      Shoreline >
                                                      zone (1 m)
                                          Benthic sample collected
                                         from dominant habitat within
                                              littoral zone
^
•#•
0
Riparian
zone
Littoral
zone
Ll5m
MOm
bservation station
Figure 5.  Diagram of sampling locations within each lake.
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                                                   Region 10 Lakes Assessment
Table 2. Summary of field data collection protocols.
Metric Type
Field Method
Sampling atX-site (deepest part of lake)
Secchi disc
transparency
Water chemistry
Water quality profile
Chlorophyll-a
Phytoplankton
Zooplankton
Sediment diatoms
Algal toxin
Sediment mercury*
Deployed from shady side of boat. Depth of disappearance and
reappearance were recorded. Secchi reading was used to define the
euphotic zone for the water chemistry data collection procedures (2 times
Secchi depth = total euphotic zone).
Water sample collected with an integrated sampler so that water could be
collected from the upper two meters of the water column, which
encompasses the euphotic zone. When Secchi depth determined that the
euphotic zone was < 2 meters the integrated sampler was only deployed to
that depth.
In situ DO, pH, water temperature, and conductivity were measured with an
electronic meter at the surface and through the water column (DO value
used in assessment was the mean value from the top 2 m).
Collected as part of water sample using the integrated sampler. Sample was
filtered in the field and filter was submitted for analysis.
Collected as part of water sample using the integrated sampler.
Conducted two vertical sampling tows through the entire water column, one
using fine (80um) and one using coarse mesh (243um) Wisconsin nets.
A 4in. diameter coring device was deployed to collect a sediment core with
minimum length of 45 cm. A one-cm slice was removed from both the top
and bottom of the core.
Collected as part of water sample using the integrated sampler.
Small plug of sediment from surface portion of sediment core was removed
with a pipette prior to removal of the 1-cm slice for the diatom sample.
Sampling at 10 physical habitat stations
Physical habitat
Benthic Invertebrates*
Enterococci
Recorded three types of visual (qualitative) observations made within the
habitat station diagramed in Figure 5:
1) Littoral habitat cover and structure recorded from 10x1 5m littoral plot
2) Riparian/shoreline vegetative structure and cover complexity at three
levels (tree canopy, understory, and ground cover) recorded from
Riparian/shoreline plot.
3) Human influences within the riparian/shoreline/littoral portions were
recorded.
A 500 urn D-frame kick net was swept through a single 1 linear meter of the
dominant habitat type at a maximum depth of 0.5m. Samples from all ten
stations were composited into one sample.
Water sample collected in littoral zone of last physical habitat station where
lake depth is one meter deep. Sample collected at 0.3 meters depth.
*=data not available for report
C. Landscape Data Methods

Basin area was delineated for each lake by EPA Office of Water using components of
the NHDPIus system. The NHD flowline data was examined to  determine the lowest
Hydrologic sequence number.  This number was selected as the lake outlet and  its
downstream  measure was used as the point location of the pour  point. This point and
the flowline data associated  with the waterbody was used to delineate the  drainage
basin using the NHDPIus Basin Delineation tool.  A few lakes that were not found on the
                                      12

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                                                     Region 10 Lakes Assessment


NHDPIus Basin network had their basins delineated using the ArcGIS Spatial Analyst-
>Hydrology->Watershed tool.  A sample watershed is in Figure 6.
Figure 6. Example of lake contributing area with sample cover classes and illustration of four buffers
distances, entire watershed, 5km, 2km and 200m, in which each cover attribute was calculated (Smith
reservoir, Oregon).
Within each watershed polygon, landcover metrics such as percent forest and percent
agriculture were calculated  from  National  Land  Cover  Database (NLCD)  Digital
coverages. The Analytical Tools Interface for Landscape Assessments (ATtlLA 3.x), an
ArcView Software extension (Ebert et al. 2000), was used to calculate the metrics.  In
addition to these standard landcover metrics, EPA Region 10 generated a suite of other
metrics that are relevant to human disturbance in the Pacific Northwest.  These metrics
relied on  the use of higher resolution data  available for the region  and incorporated
several models specific to the Western US. Landscape metrics used in this analysis are
summarized  in (Table 3).  Additionally,  landcover  metrics  were-calculated at three
buffer distances  from the lake, 5km, 2km, and nearshore 200m (Figure 6).  These are
used  in the analysis to test for the optimum buffer that  gives the best expression  of
landscape stressor metrics. Results of the analysis of these metrics are in Appendix 2.
                                       13

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                                                    Region 10 Lakes Assessment
Table 3. Summary of landscape metrics used for comparison to lake condition.
Metric Category
Land cover
Forest
disturbance
Agriculture on >
9% slope
Potential Unit
Grazing
Sediment delivery
model
Roads
Human population
Land ownership
Elevation
Precipitation
Metric Description
Percent cover of land types (% forest, shrub, agriculture, etc.)
Attributes of "Transitional from Forest harvest' and
Transitional from Forest Fire' are more detailed forest
vegetation conditions over the standard NLCD metrics which
commonly interpret 'disturbed' forest harvest as either Grass
or Shrub cover.
Amount of agriculture on steep slopes. Calculated from slope
grid, 9% threshold value, and agriculture coverage.
Indicator of the intensity of potential cattle/calf grazing.
Calculated from county cattle census data, Potential Cow
Habitat score which is in turn calculated from five inputs: land
ownership, land cover, proximity to water, topographic
position grid index, and slope.
Estimate of basin average rates of soil erosion and total
annual sediment delivery at the basin outlet. Calculated from
empirical models 'RUSLE (Renard et al. 1997) and SEDMOD
(Fraser1999).
Road density and road stream crossing density from Tela-
Atlas data layer
Population density calculated from 2000 Census Tiger File
census layer.
Four attributes of ownership: Private, State, Federal, and
Tribal.
Mean, minimum and maximum elevation of watershed.
Mean, minimum, and maximum precipitation calculated from
1 8-year dataset.
Source
NLCD
NW_GAP database
NHD and 30m NED
slope database
NLCD, NHD and 30m
NED slope database
CIS based modeling
tool from USEPA
Landscape Research
Group (Van Remortel
et al. 2005, 2006)
Region 10 SDE
database
Region 10 SDE
database
ICEBEMP website
USGS National
Elevation Dataset
(NED)
Daymet website
1. Biological Condition
Lakes  have  many levels  of  interacting  biological assemblages  including  primary
producers such as algae and phytoplankton, intermediate assemblages such as benthic
macro-  invertebrates and zooplankton,  and fish  assemblages  operating  at various
trophic  levels (e.g. bottom-dwelling  herbivores or pelagic predators).   The overall
condition of a lake is defined by its functioning biological community and the number
and kinds of organisms in a lake is a direct measure of its health.  The biotic community
determines the response indicators  because alterations  and disturbances to lakes
change  the biotic community.  Two biotic assemblages are evaluated in the survey,
plankton assemblage  and sediment  diatoms.  Although benthic macro-invertebrates
were collected at the shore plots, the model of biological condition resulting from these
data has not been finalized by EPA Office of Water and is not presented in this report.
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                                                    Region 10 Lakes Assessment
Phytoplankton (floating  algae) and zooplankton (free  floating  animals) are  highly
responsive to changes  in lake ecosystems.   They are  useful response indicators
because  the  effect  of environmental changes  can  be detected through changes in
species composition, abundance, and body size  (for zooplankton). For the NLA, project
researchers  developed  a combined  phytoplankton-zooplankton "Observed  versus
Expected  Index" (0/E Index).  This type of index  estimates biological  condition by
measuring  the agreement  between  the  taxonomic  composition  expected  under
reference conditions and that observed at the individual lakes and thus expresses taxa
loss.  The model is complicated by the fact that taxonomic composition varies with
natural environmental factors.  The 0/E Index  depends on  models that predict how
taxonomic composition varies and on calibration to the reference sites.

Diatoms are a group of algae that have silica based cell walls. When these organisms
die, these cell walls (valves) are deposited on the substrate. Through time, subsequent
sedimentation  preserves these valves.  Because the valves are unique to  particular
species, diatom valves present in sediment cores can be  used  to identify the diatom
assemblage at various points in  the history of  the  lake.   Diatoms are  useable as a
biological condition indicator because many diatom species have well-defined optima and
tolerances for  environmental  variables  such  as  pH,  nutrients, water  salinity  or color
(Stoermer and Smol 1999). For this assessment,  information on the environmental
conditions that favor particular diatom species can be coupled with diatom assemblage
data from reference lakes to  develop a sediment "lake diatom condition"  Index (LDC).
Diatom data from the surface sediments of each lake was compared to this  index to
estimate the condition of the diatom  assemblage. Further details on the development of
both the plankton community taxa loss  model and the sediment  LDC  Index are
discussed in the NLA Technical Document (EPA  2010).

Results of these two models applied to the  Region 10 lakes data  are  in Figure 7.
Results are shown as green (good), yellow (fair), red (poor) and stippled (no data). The
plankton  community taxa loss model indicates that 62% of Region 10 inference lakes
are good, 10% fair, and 27%  in the poor category. The sediment diatom  LDC presents
a similar view with  66% in the  good category.  A  smaller proportion is in the poor
category (3%).
                                      15

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            Plankton Community O/E
                                                    Region 10 Lakes Assessment
                                          Sediment Diatom LDC
Region 10
IB-
Man-made
   Natural
Region 10
                                         Man-made
                                            Natural
          0    20   40   60   80   100
                 Percent Lakes
                                             20   40   60   80  100
                                                Percent Lakes
Figure 7.  Region 10 lakes in good, fair, poor, no data, and not assessed condition classes for the
plankton community O/E and sediment lake diatom condition (LDC) indicators of biological condition.
When natural and man-made lakes are compared, plankton taxa loss model indicates a
relatively high proportion of man-made lakes in the poor category (47%) compared to
natural lakes (16%) (Figure 7).  The sediment LDC index shows that most man-made
lakes are in the fair category (62%) while natural lakes are mostly of good condition for
this indicator (85%).
2. Water Quality and Trophic State
A. Water Quality

Chemical  stressors have the potential to affect biota of lakes by altering their basic
environment so that required tolerable ranges are no  longer present.  Key chemical
stressors  in this assessment are nutrients  (nitrogen and phosphorus), turbidity, and
dissolved oxygen.

The  nutrients nitrogen and phosphorus control algal production  in lakes.  These are
important  because algae are the primary production that drives  the biology of lakes.
Phosphorus is often the 'limiting nutrient'  in lakes of the Pacific Northwest as it controls
the pace at which algae are produced. When phosphorus is exhausted by the growing
algae, the nutrient will be essentially gone from the lake and further algal growth will be
                                      16

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                                                      Region 10 Lakes Assessment


limited.  Likewise, small increases in phosphorus can cause rapid algal growth in lakes
that are limited by phosphorus.  Excess nutrients in lakes can have negative effects on
lake biological communities, recreation, and aesthetics.

Turbidity is a  measure of light scatter that is often described as murkiness or lack of
clarity.  Suspended sediment or high concentrations of algae cause turbidity in lakes.
Although turbidity is a natural characteristic of lakes, human activities can decrease
water clarity by increasing sediment or nutrient levels.   Nitrogen, phosphorus  and
turbidity  condition  classes  are  based  on  regionally  determined  condition class
thresholds that were generated from an evaluation of reference site conditions.  Details
of cut-offs  and how these were calculated are  available in the  Technical  Document
(EPA 2010).   Summary statistics of relevant water quality and trophic state  metrics are
in Table 4.
Table 4. Water quality summary statistics for Region 10 lakes' inference population (~1700 lakes).
Metric
Total Phosphorus
Total Nitrogen
Turbidity
Chlorophyll-a
Secchi depth*
Dissolved Oxygen**
units
ug/L
mg/L
NTU
ug/L
M
mg/L
Inference
N
1694
1694
1694
1694
1604
1694
Mean
62.22
0.65
12.18
12.37
3.89
7.72
Median
9.00
0.40
0.73
1.91
4.03
8.04
Minimum
1.00
0.01
0.24
0.07
0.04
1.00
Maximum
2670.00
7.68
574.00
194.40
36.71
11.72
Std.Dev.
186.03
0.96
58.70
25.82
2.65
1.55
* Lakes that were clear to bottom excluded from Secchi depth summary statistics.
** Dissolved oxygen value is mean of multiple measurements in the euphotic zone.
About half of the inference lakes are in good condition for nutrients, 57% of the lakes for
phosphorus and 41% of the lakes for nitrogen (Figure 8).  A substantial portion of the
lakes are in the poor category for these nutrients (39% and 49%).  Most man-made
lakes were in the poor category for both phosphorus and nitrogen.
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                                                     Region 10 Lakes Assessment
               Total Phosphorous
 RegionIO
Man-made
   Natural
          0    20   40   60   80   100

                  Percent Lakes
RegionIO
                                          Man-made
                                             Natural
                Total Nitrogen
         0    20   40   60   80   100

                 Percent Lakes
Figure 8. Lakes in good, fair, poor condition classes for total phosphorus and nitrogen.
Turbidity condition results are similar to those for phosphorus (Figure 9).  Most of the
Region  10  inference lakes are in good condition for turbidity (58%).  The man-made
lakes have a much higher proportion of lakes in the poor category compared to the
natural lakes.
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                                                     Region 10 Lakes Assessment
                       Turbidity
  Region 10
 Man-made
    Natural
            0    20    40   60    80   100

                   Percent Lakes

Figure 9. Lakes in good, fair, poor condition classes for turbidity.
Dissolved oxygen  is a direct  indicator of a lake's  ability to support  aquatic life and
aquatic organisms  have specific DO requirements.  In general, levels below 3 mg/L are
considered low and those below 1mg/L do not support aquatic life.  For this survey, the
following EPA-recommended thresholds for DO concentration were applied:  good > 5
mg/L, fair >3  to <5 and poor <3.  Region-wide, dissolved oxygen measured  in the
euphotic zone was high with a mean of 7.7 mg/L (Table 4). Almost all lakes are in the
good  category (97%).   High dissolved  oxygen in the euphotic zone is an expected
result.  Depths  below the  euphotic zone (e.g. the hypolimnion) are where low DO
concentrations are more  likely to  first occur.  Low DO in the hypolimnion is a natural
process and is not  unexpected.
B. Trophic State

The trophic state of a lake is the description of its biological productivity. Chlorophyll-a
is a measure of primary productivity of the lake and is therefore the most straightforward
indicator of  lake biological  productivity.   Levels  of nutrients and  Secchi transparency
depth are indirect indicators that also give  insight into the trophic state of a lake.  As
described above, nutrients  are often correlated to algal  production as their levels can
range from very low, resulting in limiting algal  production, or high, resulting in high algal
production.  Secchi transparency is another measure of lake clarity.  Very clear water
can indicate low levels of algal productivity while low transparency can indicate high
                                       19

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                                                      Region 10 Lakes Assessment
algal  presence.   Thresholds of  phosphorus,  nitrogen,  chlorophyll-a,  and  Secchi
transparency are used  to characterize trophic condition.  The thresholds used in this
assessment  were selected  based  on  input  from states and  are similar to  those
determined by Carlson's Trophic  State Index (Carlson 1977 and Carlson  1983).  Table
5 shows the breakdown of parameter thresholds related to each of the  four levels of
productivity.
Table 5. Carlson Trophic State Index (TSI) parameter thresholds.
Trophic State
Oligotrophic
Mesotrophic
Eutrophic
Hypereutrophic
Chlorophyll-a
(M9/L)
<2
2-<7
7-<30
>30
Total Phosphorus
(M9/L)
<10
10-<25
25-<100
>100
Total Nitrogen
(mg/L)
<0.35
0.35-<0.75
0.75 -<1. 4
>1.4
Secchi
Transparency (M)
>4
4->2
2-0.7
<0.7
Eutrophication, the process of moving  to  a more biologically productive state, is a
natural progression in the life  of most natural lakes.  The trophic conditions of lakes
range from highly productive (hypereutrophic) to very low productivity (oligotrophic).   In
the Region 10 inference lake population, the chlorophyll-a measures indicate  that most
of the lakes are oligotrophic (62%) followed by a relatively even distribution of the more
productive categories  (Figure  10).  The other three TSI thresholds for nutrients and
Secchi transparency depth also indicate dominance of oligotrophic lakes in Region 10.
   ChlorA
   Total P
   Total N
   Secchi
           Hi!

           I
• Oligotrophic

ElMesotrophic

D Eutrophic

DHypereutrophic

Dmissing
         0%
20%    40%    60%    80%   100%
Figure 10. Percentage of inference lakes in each of four trophic categories based on
TSI thresholds for four trophic state indicators.
Comparing TSI  thresholds for chlorophyll-a between the natural  and the man-made
lakes, we see a  large difference in the proportion of oligotrophic lakes (Figure 11).  The
                                        20

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                                                      Region 10 Lakes Assessment


natural lakes tend to be oligotrophic while the man-made lakes are more productive and
have higher levels of eutrophication.


                Trophic Status: Chlorophyll a
    RegionIO
   Man-made
• Oligotrophic
QMesotrophic
n Eutrophic
D Hypereutrophic
n missing
     Natural
             0     20    40    60    80   100

                      Percent Lakes


Figure 11.  Percent of lakes in four trophic classes based on TSI thresholds for chlorophyll-a.
Generally the poor classification of the lakes by trophic state is related to high nutrient
levels resulting in increased primary production.  However, this relationship  is more
complex as 'high' nutrients may not necessarily be responsible for a negative biological
response.  Appendix 3  examines  the factors that may be affecting lake  production.
The possible biological response to the observed nutrient levels within Region 10 lakes
is evaluated.
3. Physical Habitat Stressors
Lakeshore and littoral habitat are important characteristics of lake ecological condition.
These habitats  support the biological community  by supplying food,  refuge  from
predators, and conditions  suitable for reproduction and  rearing.   Shore areas also
influence nutrient cycling, production and sedimentation rates.  The interface between
the lakes and human disturbance often occurs at the lakeshore where human activities
can adversely affect the lake by reducing habitat complexity.  Physical habitat indicators
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                                                     Region 10 Lakes Assessment


are useful for diagnosing likely causes of ecological degradation in lakes and  can be
used  as  benchmarks to  compare  future  habitat changes  that  may result  from
anthropogenic activities.

Field data collected in the terrestrial, shoreline, and littoral zones results in hundreds of
individual  measurements  and  observations  describing  an array  of  characteristics
including bank morphology, substrate, fish concealment features, aquatic macrophytes,
terrestrial vegetative structure, and human land use and disturbance. EPA researchers
evaluated and summarized  these data into four integrative physical habitat indicators of
lake condition. These four stressor indicators are described as follows:

   •  Littoral (shallow water zone)—metric that combines cover and structure features
      used  by  biotic assemblages in  the littoral zone.  These include large woody
      debris, snags,  brush, overhanging vegetation,  aquatic macrophytes,  boulders,
      and ledges.
   •  Lakeshore cover and  structure—metric that  combines structure  and cover
      characteristics of three layers of vegetation (tree canopy,  understory, and ground
      cover) present in the  lakeshore zone (terrestrial and shoreline plot)
   •  Physical  habitat complexity-metric that  combines  data  from the littoral  zone
      cover estimates and the  vegetation structure of the lakeshore plot.
   •  Human disturbance- distribution, extent, of human land  use activities in the
      lakeshore area and the proximity of these activities.

Condition ratings of good, fair, poor were established relative to the reference conditions
that exist within the region.  Details on how these metrics were calculated and how the
condition classes were determined and assigned are  described in  the NLA Technical
Document (EPA 2010).

Across Region  10,  35% of the inference  lake population had good lakeshore habitat
where lakeshore vegetation is  complex and intact as expected by the comparisons to
the reference condition (Figure 12). An equal proportion of the lakes were in the poor
category,  indicating loss of lakeshore  complexity.  Man-made lakes had a very high
occurrence of poor lakeshore condition as indicated by this metric.  The condition of
shallow water areas was substantially  better (Figure  12).   Overall, the  quality of the
littoral zone is good, indicating there is usually adequate quantity of shallow habitat and
that this habitat has adequate complexity to support biological assemblages. Over 68%
of the  inference lakes have shallow water habitat that has structure and complexity
consistent with the  reference condition.
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                                                     Region 10 Lakes Assessment
               Lakeshore Habitat
             Shallow Water Habitat
Region_10
Man-made
   Natural
Region_10
Man-made
   Natural
          0    20   40   60   80   100

                  Percent Lakes
          0    20   40   60   80   100

                  Percent Lakes
Figure 12. Lakes in good, fair, poor condition classes for lakeshore habitat and shallow water habitat.
The physical habitat complexity indicator is the arithmetic mean of the lakeshore and
shallow water  habitat metrics and provides a  more  generalized  view of habitat
conditions (Figure 13). About 50% of the inference lakes have good habitat vegetative
cover and complexity with good structure and cover in the littoral zone.  Over 50% of the
man-made lakes  are  poor for overall  physical  habitat.   The  signature of human
disturbance results in fair-to poor-rating in 80% of the man-made  inference  lakes
(Figure 13). Less than 2%  of the man-made lakes were in the good condition class for
disturbance in the lakeshore area.
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                                                     Region 10 Lakes Assessment
          Physical Habitat Complexity
             Lakeshore Disturbance
Region_10
Man-made
   Natural
Region_10
Man-made
   Natural
           0    20   40    60    80  100

                  Percent Lakes
          0    20   40   60   80   100

                  Percent Lakes
Figure 13. Lakes in good, fair, poor condition classes for habitat complexity and lakeshore disturbance.
4. Suitability for Recreation
Recreation indicators address the ability of lakes to support human activities such as
boating,  swimming,  and fishing,  which are protected uses under the federal Clean
Water Act.   Many  factors affect  the  recreational quality of lakes,  from aesthetic
characteristics such  as water clarity and quantity of macrophytes to the quality of the
fish  community  that supports sport fishing.   Safety for recreation is increasingly of
concern to the public. Algal toxins,  pathogenic microbial organisms, and contaminants
in fish tissue are the three areas of concern  for health hazards to people, pets, and
wildlife.  Of these, the National  Lakes  Survey focuses primarily on  algal toxins as
indicators of recreation  suitability.   The bacteria  of the  genus  Enterococcus were
measured as an indicator of the potential for pathogens. .
A. Algal toxins

Cyanobacteria (i.e. blue-green algae) are naturally occurring algae that can produce
algal toxins. Cases of wildlife fatalities, off-flavor water and fish, and human skin rashes
have been attributed to blue-green algae exposure.  Eutrophic conditions can result in
periodic cyanobacteria blooms that appear on the lake's surface as unsightly layers of
odiferous scum.  Although cyanobacteria may be present, the actual production of algal
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                                                      Region 10 Lakes Assessment


toxins cannot be implied as not all cyanobacteria produce algal toxins. Determining the
presence/hazard of algal toxins  is complicated by the fact that their presence  is both
spatially and temporally erratic.  Algal blooms are not uniform on the lake surface, but
tend to concentrate on the windward shore. Similarly, physical and chemical conditions
that promote algal blooms are ephemeral. Determining presence/hazard of algal toxins
in a one-day data collection event is therefore challenging.  Three indicators were used
to assess algal toxin risk:  microcystin presence - a common  algal toxin, cyanobacteria
cell counts - bacteria that can produce algal toxins, and chlorophyll-a concentration - a
general measure of algal presence.   Note that the last two indicators are not direct
measures of algal  toxins but are surrogates for their presence.  The World  Health
Organization established  risk thresholds that we  use  to assess risk to recreation
suitability (Table 6).
Table 6.  World Health Organization's recreation indicator thresholds of risk associated with potential
exposure to algal toxins.
Indicator
Microcystin (M9/L)
Chlorophyll-a (M9/L)
Cyanobacteria (#/L)
Low
<10
<10
< 20,000
Moderate
10-<20
10-<50
20,000- <1 00,000
High
>20
>50
> 100,000
Microcystins, along  with  anatoxin-a  and saxitoxins  are among  the most common
cyanotoxins (Graham et al. 2010).  Microcystin is a liver toxin that is known to cause
tumors and  is likely carcinogenic to humans.  The presence of microcystin was low in
the inference lake population and only 12% of lakes had levels of microcystin above the
detection limit of 0.1  ug/L.  All lakes of the inference population  (100%) were rated as
having low  risk to recreation suitability due to microcystin presence.  The other two
measures of cyanotoxin exposure risk indicate that the inference lakes have an overall
low level of risk (Figure  14).  Region-wide, the proxy indicators show over 80% of
inference lakes having low risk.  For the chlorophyll-a indicator,  a higher proportion
man-made lakes had high  risk (30%) than for natural lakes (<2%).
                                       25

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               Cyanobacteria Risk
                                                       Region 10 Lakes Assessment
                Chlorophyll-a Risk
 RegionIO
Man-made
   Natural
 RegionIO
Man-made
   Natural
               20    40   60   80   100

                  Percent Lakes
               20   40    60   80

                  Percent Lakes
100
Figure 14.  Lakes within  low, medium and high risk categories for algal toxin  exposure based  on
cyanobacteria cell counts and chlorophyll-a concentration.
B. Pathogens

Enterococci are bacteria found in soil, vegetation, and surface water that have been
contaminated by animal excrement.   Most species of enterococci are not  harmful to
humans, however their presence can  indicate disease causing agents carried by fecal
material.  Currently there are no water quality criteria or recommended thresholds for
evaluating the enterococci data collected as part of the survey. Thus, the results  are
limited in their value as an indicator of the condition of lakes.  For this survey,  a  simple
ranking of the enterococci data from  all  lakes of the survey was  developed  by EPA.
Four  category rankings were determined by reviewing the  data for clustering and
professional judgment.  This  ranking provides a relative indication of  the presence of
bacteria in lakes (Table 7).
Table 7.  Results of ranking Region  10 data by Enterococcus concentration categories.   Samples
collected from 88 sites (inference population =1694).
Ranking (CCE/100mL)*
1 <500
2 500-1,000
3 1,000-5,000
4 >5,000
% R10 inference sites
96
1
2
1
R10 results range
Non detects- 497
515-786
1 ,698-2486
6127
*Data are expressed as Calibrator Cell Equivalents (CCE) per volume.
                                        26

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                                                    Region 10 Lakes Assessment
In Region 10,  most lakes are in the lowest ranking category of enterococci presence
and many of the sample lakes were below the detection limit. All of the reference lakes
sampled in Region 10 were also in the  lowest category.   These results add to the
consistent picture that condition of the Region's lakes is good for recreation suitability.
C. Contaminants in Fish Tissue

Fish tissue used to examine  contaminant exposure was not collected as part of this
assessment.   However, in  the early 2000s, EPA Office of Science and  Technology
conducted a  National Lake Fish Tissue Study  which evaluated  the condition of the
nation's lakes for this important  indicator of recreational suitability.  This study  used
similar survey design and results were applicable to the entire contiguous United States.
The Region 10 portion of this study is presented in Appendix 4.  Mercury, DDTs, and
PCBs results  are reported.
Summary of Findinqs: rankinq stressors
The relative extent calculation shows the stressors that have the greatest effect on the
target population. A stressor with high relative extent is both widespread and common
among  lakes while stressors  with  low  relative  extent occur  over  a small area or
infrequently over a wide area.  The relative extent for this survey is simply a ranking of
the 'poor'  category results for each  stressor indicator,  ordered according to their
magnitude  by percent  of lakes.  Looking across  all of the stressor indicators, those
associated  with water quality and trophic state had slightly higher impact on lakes of the
region  followed by physical habitat  indicators (Figure 15).  The following are overall
summary statements of indicator results.

   •  Evaluation of the biological condition of Region 10 lakes relied on the combined
      zooplankton/phytoplankton 0/E scores. The results showed that 62% are good,
      10% fair, and 27% poor condition.

   •  Chlorophyll-a concentrations indicate that 12% of the lakes are hypereutrophic
      with  the rest having progressively lower states of eutrophication.

   •  Nutrients were the most extensive stressors in the region with 49% of the lakes
      classified as being in poor condition for nitrogen and 39% for phosphorus.

   •  Three habitat stressors related to lakeshore condition (lakeshore habitat,
      lakeshore  disturbance and habitat complexity) were similar in their extent,
      ranging from 30% to 35% in poor condition.

   •  Three indicators of recreational suitability support that there is a low risk of algal
      toxin exposure in lakes of Region 10.

                                       27

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                                                       Region 10 Lakes Assessment
                      Extent of Stressors- all
     Total Nitrogen


  Total Phosphorus


  Lakeshore Habitat


 Habitat Complexity


 Shore Disturbance


         Turbidity


     Littoral Habitat


 Dissolved Oxygen
49.2
                 0     20    40   60    80    100

                        Percent Lakes
Figure 15. Relative extent of poor stressor condition across all stressor metrics for all Region 10 lakes.
As shown throughout this report, the man-made lakes have generally poorer condition
than the natural lakes (Figure 16).  Both habitat and water quality indicators were
substantial stressors for man-made lakes.  More than 50% the man-made lakes were
classified as being in poor condition for all but two of the indicators.  Also, only 45% of
man-made lakes were in the good category for biological condition compared to 72% of
the natural lakes. Natural lakes were predominantly in the  good category except for the
total nitrogen indicator (40% in poor category).
                                        28

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                 Extent of Stressors-natural
                                                             Region 10 Lakes Assessment
                                                              Extent of Stressors-manmade
    Total Nitrogen
Habitat Complexity
 Total Phosphorus
 Lakeshore Habitat
        Turbidity
Shore Disturbance
 Dissolved Oxygen
    Littoral Habitat
      24.3
     18.7
          40.3
   11
1.9
1.1
                                                Lakeshore Habitat
                                               Shore Disturbance
                                                Total Phosphorus
                                                       Turbidity
                                                   Total Nitrogen
                                               Habitat Complexity
                                 Littoral Habitat
Dissolved Oxygen
                     20    40   60    80    10G
                        Percent Lakes
                                                  20   40    60    80   100
                                                      Percent Lakes
      Figure 16. Relative extent of poor stressor condition across all stressor metrics for natural lakes and man-
      made lake categories.
      Recommendations
      Several recommendations for improving the survey came to light during the course of
      this analysis and from discussions with state collaborators:

         •  Improve site selection  design to insure more  reasonable error  bounds  in the
            western ecoregions.

         •  Develop CIS landscape condition indicators.  Our analysis of landscape metrics
            in Appendix 2  shows several metrics that  have good potential as indicators  of
            lake watershed condition.  Further development of landscape indicators  using
            larger datasets would provide another dimension to the overall description of lake
            condition.

         •  Add fish tissue contaminants as a recreation suitability indicator. Although some
            states  have monitoring  programs for the tracking of toxins in fish tissue, data in
            the Region 10 states is  limited.  Having  data collected as part of this survey
            would  be  a significant contribution to  understanding this important aspect  of
            human health  in  Northwest  lakes.  Information on  metals  (mercury,  arsenic,
            selenium), PBDEs, and legacy pesticides, are specifically needed.
                                              29

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                                                  Region 10 Lakes Assessment
•  Improve ability to assess recreation suitability by sampling areas that are more
   likely used for recreation.  Sampling for this indicator would be more relevant at
   sites adjacent to the shore  rather than  the center of the lake.  Also,  improve
   ability to  interpret data  by collecting pathogen data that can be used to classify
   the condition.  Many states  use  E. coli.   If problems with holding times can be
   overcome, this would be a more useful metric for pathogens.

•  Sample an  adequate number of sites to allow determination of relative risk.
   Although methods are available for determining relative risk, the  low number of
   sites in each cell of the contingency table that are used to compute the ratings
   prohibits  this calculation for  Region 10.   More sample sites would thus yield  a
   more meaningful analysis.

•  Include a more comprehensive analysis of the  diatom core in order to provide
   good information on  past  conditions.  This information would be a useful long-
   term indicator.

•  Research a  more effective way to include invasive species assessment into the
   survey.  These data were included as qualitative observational information that  is
   not rigorously analyzed.  This is a very important aspect of lake condition.
                                    30

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                                                   Region 10 Lakes Assessment
References
Bailey, R. C., R. H. Morris, et al. 2004. Bioassessment of freshwater ecosystems: Using
the reference condition approach. Kluwer Academic Publishers. New York.

Carlson, R.E.  1977. A trophic state index for lakes. Limnology and Oceanography.
22:361-369.

Carlson, R.E.  1983.  Discussion: Using differences among Carlson's trophic state index
values in regional water quality assessment. Water Resources Bulletin. 19:307-308.

Ebert, D., T. Wade, J. Harrison, and D. Yankee. 2000. Analytical tools interface for
landscape assessments (ATtlLA) User Guide. Version 1.004.  Office of Research and
Development, U.S. Environmental Protection Agency. Las Vegas, NV.

Fraser, R.H.  1999. Sedmod: A CIS-based delivery model for diffuse source pollutants
(nonpoint source pollution). Ph.D. Dissertation. Yale University, New Haven, CT.

Graham, J. L., K. A. Loftin, et al. 2010. Cyanotoxin mixtures and taste-and-odor
compounds in cyanobacterial blooms from midwestern states. Environmental Science
and Technology. Accepted August 2010.

Hayslip, G., L. Edmond, V. Patridge, W. Nelson, H. Lee , F.  Cole, J. Lamberson, and L.
Caton. 2006.  Ecological condition of the estuaries of Oregon and Washington.  EPA
910-R-06-001.  U.S. Environmental  Protection Agency, Region 10, Seattle, Washington.

Herger, L.G., G.A. Hayslip, and P.T. Leinenbach. 2007. Ecological Condition of
Wadeable Streams of the Interior Columbia River Basin. EPA-910-R-07-005. U.S.
Environmental Protection Agency, Region 10, Seattle, Washington.

Hughes, R. M. 1995. Defining acceptable biological status by comparing with reference
conditions. Pages 31-47 in Biological Assessment and Criteria: Tools for water
resource planning and decision making. W.S. Davis and T. P.  Simon.  Lewis Publishers.
London.

Omernik, J. M. 1987.  Ecoregions of the conterminous United  States.  Annals of the
Association of American Geographers 77: 118-125.

Overton, W. S.,  D. White, et al. 1990. Design report for EMAP, Environmental
Monitoring and Assessment Program.  EPA/600/3-91/053. U.S. Environmental
Protection Agency. Washington, D.C.

Renard, K.G., G.R. Foster, G.A. Weesies, O.K. McCool, and D.C. Yoder. 1997.
PrediSoil Erosion by Water: A Guide to Conservation Planning with the Revised
Universal Soil Loss Equation (RUSLE). Agriculture Handbook No. 703. U.S. Department
of Agriculture, Agricultural Research Service, Washington, D.C. 404 pp.

                                      31

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                                                   Region 10 Lakes Assessment
Rowan, J.S., R.W. Duck, O.M. Bragg, A.R. Black, and I.S.M.E.J. Cutler, and P.J. Boon.
(2006). Development of a technique for Lake Habitat Survey (LHS) with applications for
the European Union Water Framework Directive.  Aquatic Conserv: Mar. Freshw.
Ecosyst. 16: 637-657 (2006) 16: 637-657.

Stevens, D.L., Jr. and A.R. Olsen 2004. Spatially balanced sampling of natural
resources.  Journal of the American Statistical Association 99:262-278.

Stoddard, J. L, D. P. Larsen, et al. 2006.  Setting expectations for the ecological
condition of streams: the concept of reference condition.  Ecological Applications 16(4):
1267-1276.

Stoermer E.F. and J.P.  Smol. 1999. Applications and uses of diatoms: prologue. In
Stoermer E.F. and Smol J.P. (eds) The diatoms: Applications for the
Environmental and Earth Sciences, Cambridge, Cambridge University Press, pp 38.

U.S.E.P.A. and U.S.G.S. 2009. NHDPIus users guide. (Tommy Dewald, Project
Manager, EPA Office of Water),  http://www.horizon-systems.com/nhdplus/.

USEPA. 2003. Level III ecoregions of the continental United States (revision of
Omernik,  1987). U.S. EPA National Health and Environmental Effects Research
Laboratory. Corvallis, Oregon. Map M-1, various scales.

USEPA. 2007. Survey of the Nation's Lakes. Field Operations Manual. EPA 841-B-07-
004.  U.S. Environmental Protection Agency. Washington,  DC.

USEPA. 2009a.  National lakes assessment: a collaborative survey of the nation's lakes.
EPA/841-R-09-001. U.S. Environmental Protection Agency, Office of Water and Office
of Research and Development. Washington, DC. April 2010.

USEPA. 2009b.  Survey of the Nation's Lakes: Integrated Quality Assurance Project
Plan. EPA/841-B-07-003. U.S. Environmental Protection Agency, Office of Water and
Office of Research and Development.  Washington,  DC.

USEPA. 2010.  National Lakes Assessment: Technical Appendix Data Analysis
Approach. EPA 841-R009-001a. U.S. Environmental Protection Agency Office of Water
and Office of Research and Development.  Washington, D.C.

Van Remortel, R.D., R.W. Maichle, D.T. Heggem and A.M. Pitchford. 2005.  Automated
CIS watershed analysis tools for RUSLE/SEDMOD soil erosion and sedimentation
modeling. EPA/600/X-05/007. USEPA, Washington, DC.
                                     32

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             Region 10 Lakes Assessment
Appendix
Appendix 1 . List
SITEJD
NLA06608-0005
NLA06608-0085
NLA06608-0241
NLA06608-0277
NLA06608-0497
NLA06608-0561
NLA06608-0581
NLA06608-0597
NLA06608-0650
NLA06608-0769
NLA06608-0837
NLA06608-0961
NLA06608-1281
NLA06608-1329
NLA06608-1473
NLA06608-1521
NLA06608-1537
NLA06608-1793
NLA06608-1930
NLA06608-1985
NLA06608-1989
NLA06608-2005
NLA06608-2305
NLA06608-2497
NLA06608-2801
NLA06608-2954
NLA06608-3121
NLA06608-3157
NLA06608-3313
NLA06608-3329
NLA06608-0049
NLA06608-0290
NLA06608-0306
NLA06608-0402
NLA06608-0406
NLA06608-0614
NLA06608-0625
NLA06608-0658
NLA06608-0677
1.
Sampled
Lakes in
Region
10
of sampled probability lakes including design coordinates
State Weight
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
ID
OR
OR
OR
OR
OR
OR
OR
OR
OR
15.010328
9.195787
3.738934
3.738934
9.195787
2.425646
2.425646
2.425646
4.030970
4.030970
3.395574
3.660791
233.572732
4.030970
2.425646
3.395574
15.010328
4.030970
3.738934
2.425646
3.738934
3.395574
9.914039
3.660791
3.395574
13.922860
4.030970
4.030970
3.395574
3.660791
16.398147
3.999259
4.084627
168.547626
4.403663
3.999259
168.547626
3.999259
3.709520
Longitude
(dd)
-114.840386
-116.141432
-111.729262
-113.400612
-111.815938
-116.089322
-114.382789
-116.665495
-111.396362
-116.602150
-113.923741
-116.686557
-116.155618
-116.169740
-116.893380
-111.853579
-116.638410
-116.564348
-111.473476
-116.798693
-114.891000
-116.112474
-116.527985
-116.970121
-112.689224
-111.603733
-116.462359
-115.798714
-111.836249
-116.824496
-117.153355
-120.525686
-119.413348
-124.078093
-121.704430
-123.268618
-118.185992
-124.079610
-118.446839
Latitude
(dd)
43.929209
43.460454
42.291543
42.678174
42.107653
44.948436
43.252639
43.547058
44.642099
47.465617
43.325359
47.489395
48.135006
45.068128
47.890852
42.233175
48.161727
47.520730
44.100512
47.448688
42.202900
42.297374
48.184430
48.008220
42.085663
44.023613
44.964527
43.549425
42.123193
48.457411
45.062327
42.195652
43.417883
42.889749
45.180381
43.378645
44.954294
44.023835
42.772394
Area
(ha)
19.5
33.4
170.2
3395.5
34.2
2018.4
1443.3
3571.2
2459.2
399.6
81.3
91.9
6.2
148.1
370.3
61.5
17.4
201.8
144.2
11029.2
393.0
56.6
39.3
54.5
50.2
19.1
211.4
332.4
52.3
70.5
12.9
59.2
107.8
7.5
141.9
52.7
6.8
60.6
89.8

(90 total).
Major
ecoregion
WMT
XER
XER
XER
XER
WMT
XER
XER
WMT
WMT
XER
WMT
WMT
WMT
WMT
XER
WMT
WMT
XER
WMT
XER
XER
WMT
WMT
XER
XER
WMT
WMT
XER
WMT
WMT
WMT
XER
WMT
WMT
WMT
WMT
WMT
XER


Level III
ecoregion
16
12
80
12
13
16
12
12
17
15
12
15
15
16
15
13
15
15
12
15
80
80
15
15
13
12
11
16
13
15
11
9
80
1
4
78
11
1
80
33

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                                                          Region 10 Lakes Assessment
Appendix 1 continued.  List of sampled probability lakes including design coordinates (90 total).
SITEJD
NLA06608-0678
NLA06608-0870
NLA06608-0881
NLA06608-0933
NLA06608-0934
NLA06608-1058
NLA06608-1073
NLA06608-1190
NLA06608-1266
NLA06608-1426
NLA06608-1445
NLA06608-1446
NLA06608-1638
NLA06608-1894
NLA06608-1958
NLA06608-2082
NLA06608-2438
NLA06608-2450
NLA06608-2481
NLA06608-2673
NLA06608-2726
NLA06608-0033
NLA06608-0081
NLA06608-0086
NLA06608-0193
NLA06608-0209
NLA06608-0337
NLA06608-0449
NLA06608-0529
NLA06608-0593
NLA06608-0641
NLA06608-0721
NLA06608-0785
NLA06608-0849
NLA06608-1041
NLA06608-1057
NLA06608-1217
NLA06608-1297
NLA06608-1425
NLA06608-1489
NLA06608-1617
NLA06608-1873
NLA06608-2134
NLA06608-2193
State
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
OR
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
Weight
4.403663
3.999259
4.403663
4.403663
1.750362
4.403663
10.830667
4.403663
15.210134
4.403663
4.084627
10.830667
3.999259
10.830667
1.750362
4.403663
10.046007
16.398147
168.547626
16.398147
10.830667
32.549373
32.549373
8.741017
7.938297
2.337088
7.938297
21.498248
2.337088
32.549373
21.498248
7.938297
7.363184
2.337088
7.363184
8.741017
8.741017
8.107748
32.549373
21.498248
7.938297
8.741017
21.498248
32.549373
Longitude
(dd)
-121.780483
-122.046378
-118.045641
-118.150427
-122.038246
-122.214210
-117.272370
-123.300076
-119.997611
-124.246005
-118.852169
-122.017536
-121.873209
-121.745625
-122.421606
-122.600822
-119.563401
-124.179044
-119.392762
-118.685037
-121.766543
-121.299060
-122.124168
-122.426035
-121.175840
-122.083679
-122.656243
-117.691524
-119.363985
-122.327709
-117.664050
-122.405638
-119.570872
-124.632527
-119.592605
-121.094003
-117.332380
-119.648323
-122.972559
-122.569031
-122.705033
-123.264720
-122.743569
-124.035496
Latitude
(dd)
43.963587
44.316686
44.680299
43.927628
43.736127
42.364916
45.229364
44.087941
42.119982
43.452205
42.918354
43.796302
44.371781
44.026655
43.662976
42.151396
42.066805
43.631644
43.988628
44.306582
43.713787
47.311084
48.226120
45.616571
48.704386
47.576010
48.393824
48.135804
47.184414
48.708678
48.418773
46.497287
46.871389
48.090401
47.728697
47.266902
48.273757
46.693467
47.192047
46.986303
47.571772
47.487995
45.892663
46.419506
Area
(ha)
102.2
63.7
911.8
716.8
2443.7
477.1
24.3
3230.3
13.8
132.3
273.1
27.7
90.7
32.9
1062.1
256.5
27.1
14.5
5.9
12.7
40.9
15.2
10.0
101.3
81.4
1934.3
51.9
48.2
2575.6
10.3
27.0
84.0
50.9
3036.2
75.2
1816.3
194.6
219.3
14.5
22.2
93.2
1551.9
31.8
17.6
Major
ecoregion
WMT
WMT
WMT
WMT
WMT
WMT
WMT
WMT
XER
WMT
XER
WMT
WMT
WMT
WMT
WMT
XER
WMT
WMT
WMT
WMT
WMT
WMT
WMT
WMT
WMT
WMT
WMT
XER
WMT
WMT
WMT
XER
WMT
XER
WMT
WMT
XER
WMT
WMT
WMT
WMT
WMT
WMT
Level III
ecoregion
4
4
11
11
4
4
11
3
80
1
80
4
4
4
4
78
80
1
11
11
9
77
2
3
77
2
2
15
10
2
15
4
10
1
10
77
15
10
2
2
2
1
3
1
                                           34

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                                                          Region 10 Lakes Assessment
Appendix 1 continued.  List of sampled probability lakes including design coordinates (90 total).
SITEJD
NLA06608-2241
NLA06608-2257
NLA06608-2513
NLA06608-2753
NLA06608-2833
NLA06608-3153
NLA06608-3265
State
WA
WA
WA
WA
WA
WA
WA
Weight
8.741017
225.045285
2.337088
2.337088
7.363184
7.938297
21.498248
Longitude
(dd)
-117.318999
-122.784397
-122.561921
-117.688988
-120.164879
-122.816780
-117.408610
Latitude
(dd)
48.154021
47.409308
47.132856
47.570687
47.918804
48.660289
48.056480
Area
(ha)
120.4
7.2
441.5
49.6
76.7
73.9
28.2
Major Level III
ecoregion ecoregion
WMT
WMT
WMT
XER
XER
WMT
WMT
15
2
2
10
10
2
15
                                           35

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                                                    Region 10 Lakes Assessment
Appendix 2.  Analysis of Landscape Metrics
Introduction

CIS  was  used to generate landscape  indicators that integrate conditions over the
broader watershed contributing to lake condition.  Landscape metrics were generated
uniformly for all sample sites, which is useful when  lake size prohibits adequate field
collection of physical habitat data from lake shoreline zones. Our goal is to identify and
test landscape metrics as indicators of lake watershed condition.
Objectives

   1) Evaluate a large group of available landscape metrics to identify a shorter list of
      those with the most potential for estimating lake watershed condition.

   2) Using the candidate indicators from the short list that perform best, describe lake
      watershed condition for the Western Mountains portion of Region 10 NLA sites.

Landscape metrics calculated at the scale of the entire basin may not be closely tied to
nearshore habitat condition, which has been found to have a greater influence on lake
condition.  We calculated landscape  metrics at various buffer distances from the lake
shore to find the most useful scale for each metric.

Physical habitat indicators used  in the NLA will  be used  to evaluate the landscape
indicators.  Generally,  we expect a relationship between physical habitat indicators and
landscape  indicators.    Lakes within  watersheds  with  extensive watershed-scale
disturbance  are likely to have higher lakeshore disturbance as well as reduced lake
condition.  Conversely, lakes  within watersheds with low levels of human disturbance
are likely to  have lower  levels of human disturbance in proximity to the lakeshore with
natural/intact lakeshore vegetation and littoral cover complexity that result in higher lake
condition.
Identifying Best Metrics

Methods
This analysis uses watersheds from the 101  lakes sampled for the Region 10 portion of
the NLA (90  probability and  11  handpicked  sites). The initial list of landscape metrics
included about 60 basin-scale variables within the categories shown on Table 3.  The
landcover type  metrics were also calculated at three buffer widths (5km, 2km,  and
200m) for each sample lake.  Landscape metrics with the best potential to be used as
indicators of lake watershed condition have the following characteristics:

   1) an obvious relation to human disturbance (e.g. land use v. geomorphic metrics)

                                      36

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                                                      Region 10 Lakes Assessment


   2) a logical relation to lake disturbance/response indicators
   3) A reasonable range of values are represented in the data set.  For example
      metrics that have many zero values such as %wetlands are not useful.
   4) Limited autocorrelation so that each metric included is informative and not
      redundant.

Based on these desired characteristics the following steps were taken to  winnow the list
of landscape metrics:

-Check strength of association between landscape metrics generated at the basin-wide
scale with lake indicators (physical habitat, water quality, biology  response) using non-
parametric Spearman rank correlation. Also, plot and review scatter diagrams for data
distribution.  Identify candidate list of  metrics based on strength and  pattern of the
associations.
-Review the candidate metrics for logical relationships with lake  disturbance/response
indicators.
-Review the candidate metrics for autocorrelation to avoid redundancy.
-Recalculate the candidate metrics at the three buffer distances and re-check strength
of association (non-parametric Spearman rank correlation) of each.  From these results
evaluate the best buffer distance for each of the candidate metrics.
-Review the modified candidate metrics for their adequacy  of  describing  ecological
condition and determine final list of metrics to carry forward into indicator development.

Results
Following these steps, a short list of the  best landscape metrics in terms of relation to
lake disturbance/response  indicators was determined (Table A1).  The results of the
correlations to disturbance/response  indicators are  in Table  A2.  Other correlations
used for data exploration are at the end of this appendix.
Table A1. Final list of best landscape metrics based on analysis of 101 Region 10 watersheds from the
NLA.
Metric
Forest cover
Scrub-shrub cover
Potential Unit Grazing
RUSLE Cover Factor
Units
% total cover
% total cover
unitless
unitless
buffer width
200m
2Km
Basin-wide
Basin-wide
                                       37

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                                                       Region 10 Lakes Assessment
Table A2.  Spearman rank correlation rvalues between best landscape metrics and chemical, biological,
and physical habitat lakes metrics. Significant (p<.05) yet weak relationships are in bold blue <|0.5| and
moderate to high correlations in bold italic red >|0.5|.

Forest Cover

(200m)
Scrub-shrub

Cover (2km)
Potential Unit
Grazing (basin)
RUSLE Cover
Factor (basin)
*Epi.
DO

0.41


-0.44

-0.04
-0.24
Cond

-0.59


0.52

0.41
0.38
Turb

-0.75


0.54

0.36
0.57
N
total

-0.53


0.43

0.39
0.33
P
total

-0.62


0.54

0.34
0.42
Chl-a

-0.54


0.28

0.50
0.23
Secc Phyto shore
depth OE Dis.

0.70 0.43


-0.47 -0.18

-0.42 -0.28
-0.38 -0.33

-0.28


0.12

0.34
-0.01
shore
cover

0.65


-0.66

-0.01
-0.46
Lit
Cov.

0.50


-0.57

0.00
-0.30
Habitat
complex.

0.64


-0.68

0.00
-0.44
Metric abbreviations:  dissolved oxygen mean of values collected in upper 2m of water column, conductivity, turbidity,
total nitrogen, total phosphorous, chlorophyll-a, Secchi depth, phytoplankton O/E, shoreline disturbance (RDIS),
lakeshore cover (LITCVR), littoral cover (LITCVR), habitat complexity (LITRIPCVR).
Two  other  metrics,  total agriculture  cover  and  agriculture  on  slopes  >9%,  had
reasonably good correlations but data were  dominated by zero values.  Likely that a
more robust data set that included more sites in the xeric cluster would show these to
be more useful. The results  of the Sediment  Model run for each watershed was tested
but it had an  inconsistent relation to  lake response /distribution metrics.  The model
incorporates geomorphic metrics (slope) which effectively swamps out the effect of the
actual sediment  load delivered  to the lake.  Thus, this metric is  not  useful  for this
application.  However, the cover component  of the Model  'RUSLE Cover Factor' was
identified as a useful metric.  The four retained metrics are described below.

Forest Cover:
Forest cover  areas are characterized by tree cover  (natural  or semi-natural woody
vegetation, generally greater than 6  meters tall);  tree canopy  accounts for 25-100
percent of the  cover. This cover class includes the following  cover codes of the NLCD:
41.  Deciduous Forest - areas dominated by trees where 75% or more of the tree
species shed foliage simultaneously in  response to seasonal change.
42.  Evergreen Forest - areas dominated by trees where 75% or more of the tree
species 'maintain their leaves all year.  Canopy is never without green foliage.
43.  Mixed Forest - Areas dominated by trees where neither deciduous nor evergreen
species represent more than  75% of the cover present.

This metric is  calculated for the portion of the basin within 200m of the lakes shoreline
and  is expressed  as percent of  the total cover.  The  forest cover metric is positively
correlated to lake physical habitat, water clarity, and biological response indicators.

Scrub-shrub Cover:
Shrublands are areas characterized by natural or semi-natural woody vegetation with
aerial stems, generally less than 6 meters tall, with individuals or clumps not touching to
interlocking. Both  evergreen and deciduous species of true shrubs, young  trees, and
trees or shrubs that are small or stunted because of environmental  conditions  are

                                        38

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                                                     Region 10 Lakes Assessment


included.  This cover class includes code 51 of the NLCD coverage defined as: Areas
dominated by shrubs; shrub canopy accounts for 25-100% of the cover.  Shrub cover is
generally greater than 25% when tree cover is less than 25%. Shrub cover may be less
than 25% in cases when the cover of other life forms (e.g. herbaceous  or tree) is less
than 25% and shrubs cover exceeds the cover of the other life forms.

The  scrub-shrub metric is calculated for the 2km buffer area adjacent to the lakeshore
and  is expressed as percent of the total cover.  As expected, this metric  has a negative
correlation to lake physical habitat, water clarity, and biological response indicators.

Potential Unit Grazing:
The  Potential Unit Grazing (PUG) is an indicator of the intensity of potential cattle/calf
grazing.  This metric is based on estimations of cattle usage coupled with estimations of
'cow habitat' and requires calculation  of  several  grids.    The following  is a  brief
description of how this metric is calculated.

   1) A Cow Density grid is generated using USDA agriculture census data reported by
      counties on the total number of grazing cow-calves.
   2) A Potential Cow Habitat grid is generated from methods developed by EPA
      Region 10 (Pers. Comm. Peter Leinenbach)  using five inputs:  land ownership,
      land cover, proximity to water, topographic position grid index, and slope.
   3) A relative risk weighting factor is developed for the Potential Cow Habitat grid to
      define the relative intensity of  the habitat weights in each habitat grid cell.
      Applying these weights to the  grid results in a new 'Potential Cow Habitat Usage'
      grid.
   4) The final metric Potential Unit Grazing (PUG) grid calculated as the Cow Density
      Grid multiplied by the Potential Cow Habitat Usage grid.

This metric is calculated for the entire basin  and is unitless.  The Potential  Unit Grazing
indicator has a negative correlation to lake physical habitat, water clarity, and biological
response  indicators.   In general, areas  with  the  highest  potential for water quality
impacts due to grazing are flat non-protected grasslands, within 90 meters of a water
source, within counties with high cattle densities and low available potential  cow habitat.

RUSLE Cover Factor.
The  RUSLE (Revised Universal  Soil Loss Equation) model  predicts  potential surface
soil erosion across the landscape. One input to this model is the RUSLE Cover Factor
(i.e., RUSLE C), which is  used to reflect the effect of agricultural cropping and landcover
management practices on erosion rates. Specifically, RUSLE C represents the effects
of plants, soil cover, soil biomass, and soil disturbing activities on erosion.  Although no
specific reference is available to obtain these values  for  landscape scale modeling,
various references can provide estimates established at the plot scale (listed at the end
of this  Appendix).  USING the SEDMOD model, RUSLE C plot scale  measurements
obtained from literature were applied across the landscape  and estimates of weighted
average watershed RUSLE C conditions were calculated.
                                       39

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                                                     Region 10 Lakes Assessment


The  RUSLE Cover  Factor is  unitless  and  is calculated  at  the  basin scale.   It is
negatively correlated to  lake physical habitat, water clarity, and  biological response
indicators in the data set of Region 10.


Indicator Development

The  four landscape  metrics identified as having the most substantial  relation to lake
watershed condition were carried forward into the indicator development phase.


Methods
Data for the indicator development analysis were restricted to  sites within the Western
Mountains cluster. This was necessary as there were insufficient numbers of reference
sites from the Xeric cluster in Region 10 to include sites from this portion of the Region.
A total of 17 reference sites (10 handpicked  and 7 from probability site dataset) were
available for determining condition thresholds for  the  Western Mountains cluster in
Region  10.  Recall, all probability and hand-picked sites in the NLA are evaluated for
chemical and  lakeshore characteristics and  qualified as  reference  or  non-reference.
Because we are developing thresholds with only the Western Mountains reference sites
the final analysis of the condition was only applied to the  probability  sites from this same
cluster.   Of the 90  probability sites  in Region 10, 65 sites  are  within the Western
Mountains cluster.

Thresholds were based on the distribution of values in the set of 17 reference sites and
whether the correlation with the indicator is positive or negative.  For indicators where
high values indicate a better condition (e.g. forest cover), we used the 25th percentile of
the distribution of the  reference sites values  to distinguish between "least disturbed"
(similar  to reference site condition) and "somewhat disturbed" (somewhat different from
set of reference  condition values).  The  5th  percentile was  used to  distinguish between
"somewhat disturbed" and "disturbed" (very different from  the set  of reference sites).
For  indicators  where high values indicate  disturbance or poorer condition (e.g. scrub-
shrub cover), the thresholds were  reversed.  The 75th percentile of the  distribution  of
the  reference site values was used to  distinguish between "least  disturbed" and
"somewhat  disturbed" condition,  and the  95th percentile  was  used  to  distinguish
between "somewhat  disturbed"  and  "disturbed"  condition.    This   scoring  was
conservative to account for the fact that, although  minimally disturbed, reference sites
may have some  level of human disturbance.  The thresholds determined for  each of the
four  landscape metrics are in Table 3A and box plots showing the range of values in the
reference data for each metric are in FigurelA.
                                       40

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                                                             Region 10 Lakes Assessment
Table 3A. Data range percentiles (calculated directly) used to define thresholds between Least,
Intermediate, and Most disturbed for four landscape metrics based on Western Mountain region reference
sites.
Indicator
Forest cover
Scrub-shrub cover
Potential Unit Grazing
*RUSLE Cover Factor
buffer extent
200m
2 Km
basin-wide
basin-wide
refsite n
17
17
17
15
Correlation
type
positive
negative
negative
negative
5%
33.36
0.00
0.00
0.02
25%
65.19
0.28
0.03
0.03
75%
93.91
17.54
0.15
0.06
95%
97.35
25.28
0.43
0.09
Two extreme values omitted before calculation of thresholds for the RUSLE Cover Factor.
                                             41

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                                                                                                    Region 10 Lakes Assessment
                      Forest Cover 200m buffer
                 Scrub-shrub Cover 2km buffer
    110
    100
     90
 E
 o
  70


  60


  50


  40


  30


0.45


0.40


0.35


0.30


0.25


0.20


0.15


0.10


0.05


0.00


-0.05
                    Potential Unit Grazing basin
                                                      n Median = 77.2472
                                                     0 25%-75%
                                                      = (65.2, 93.9)
                                                     X non-outl.range
                                                     (33.4, 100)
E
<5
o
u
.a
D
O
CO
26
24
22
20
18
16
14
12
10
8
6
4
2
0
-~>

















D










                                                      n Median = 0.081
                                                      D 25%-75%
                                                       = (0.030, 0.148)
                                                      I Non-Outlier Rang
                                                      = (2.5E-5, 0.248)
                                                      o Outliers
                                                                        0.10
                                                                        0.09
                                                                        0.08
                                                                     «  0.07

                                                                     <5
                                                                     O  0.06
                                                                     U
                                                                     LLJ
                                                                     CO  0.05
                                                                        0.04
0.03
                                                                        0.02
                                                Q Median = 6.2
                                               0 25%-75% = (0.3, 17.5)
                                               X Non-Outlier Range
                                                = (0, 25.3)
            RUSLE Cover Factor.extremes omitted
T
D Median = 0.042
D 25%-75%
 = (0.034, 0.059)
  Non-Outlier Range
 = (0.024, 0.093)
Figure 1A. Range of values across 17 Western Mountain  region reference sites for four best landscape metrics.  RUSLE C factor presented
without extreme values (1X1=15).
                                                                           42

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                                                          Region 10 Lakes Assessment
Results
The thresholds calculated for the four landscape metrics were applied to the western
mountain  Region 10 data yielding the relative percents of least disturbed,  somewhat
disturbed, and most disturbed sites for the 65 sites  (Figure 2A).  These results were
compared to the physical habitat indicator results (Figure 3A)  for the  same western
mountain sites.  The best performing landscape indicator was forest cover calculated at
the 200m buffer. This buffer yielded similar  results  for the 65 sites as did the habitat
complexity indicator (combined metric of littoral/lakeshore cover) where about 55% of
the sites are in the least disturbed category.  The scrub-shrub  and the RUSLE C factor
indicators show  a similar  pattern, with a large majority of sites classified in the least
disturbed category.

The  Potential Unit Grazing  results  were  most  similar to the  shoreline disturbance
indicator of the  physical  habitat indicators.    Recall  that the  indicator  of  shoreline
disturbance is based on evidence of human disturbance in proximity to the shore.  Both
of these indicators  estimate  a  much lower portion of the sites  in the least  disturbed
condition category.

Future Work

The four indicators identified in this  appendix yielded results similar to  the physical
habitat indicators for the Western Mountain cluster of the Region 10 portion of the NLA.
It would be useful to further test these indicators with a larger dataset of reference sites
and in different ecoregions. These have the potential to be used for the upcoming lakes
survey with further  refinement.   They may also serve  as a reasonable substitution for
field  data from  lakes that are  too large to reasonably  collect field data on physical
habitat.
                                       43

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                                                             Region 10 Lakes Assessment
            Forest
       Scrub-shrub
       Rusle Cover        13.8
  Potential Grazing
H Least

• Intermediate

• Most
                     0    20    40   60    80   100

Figure 2A. Percent of least, intermediate, and most disturbed condition for sites of the Western Mountain
cluster of the Region  10 NLA based on landscape condition indicators (n=65).
   Lakeshore Cover
      Littoral Cover
   Habitat Complex.
     Shore Disturb.
  H Least

  • Intermediate

  • Most
                     0     20    40     60    80     100

Figure 3A. Percent of least, intermediate, and most disturbed condition for sites of the Western Mountain
cluster of the Region  10 NLA based on four physical habitat condition indicators (n=64).
                                            44

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                                                   Region 10 Lakes Assessment


Sources used to develop estimates for the Rusle C factor.

Dissmeyer, G. E., and G. R. Foster. 1980. A Guide for Predicting Sheet and Rill Erosion
on Forest Land. Technical Publication SA-TP 11, USDA Forest Service, Atlanta, GA.
Dissmeyer, G. E., and G. R. Foster. 1981. Estimating the cover-management factor (C)
in the universal soil loss equation for forest conditions. Journal of Soil and Water
Conservation 36:235-240.
Eslinger, David L, H. Jamieson Carter, Ed Dempsey, Margaret VanderWilt, Beverly
Wilson, and Andrew Meredith. 2005. "The Nonpoint-Source Pollution and Erosion
Comparison Tool." NOAA Coastal Services Center, Charleston,  South Carolina.
Accessed [Month Year] at http://www.csc.noaa.gov/nspect/.
Wischmeier, W. H., and D. D. Smith. 1978. Predicting Rainfall and Erosion Losses: A
Guide to Conservation Planning. Agriculture Handbook No. 537, U. S. Department of
Agriculture, Washington, D.C.
Yang, D. W., S.  Kanae, T. Oki, T. Koike, and K. Musiake. 2003.  Global potential soil
erosion with reference to land use and climate changes. Hydrological Processes
17:2913-2928.
Zaluski,  M. H., J. J. Consort, and S. B. Antonioli. 2004. Soil erosion and deposition
modeling using ArcGIS. in M. Aides, T. Hang, and L. M. Deschaine, editors. 2004
Business and Industry Symposium. The Society for Modeling and Simulation
International, San Diego, California, (http://www.scs.org/getDoc.cfm?id=1711, accessed
May 16, 2006)
                                      45

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                                                                                        Region 10 Lakes Assessment
Spearman Correlation results for landscape and lakeshore condition metrics to lake condition metrics. Significant
correlations (p<.05) are red bold.

Total Ag. Cover (200m)
Forest Cover (200m)
Scrub-shrub Cover (2km)
Agr. on >9% slope (basin)
Sediment Model (basin)
Potential Unit Grazing (basin)
RUSLE Cover Factor (basin)
Shoreline disturbance
Lakeshore Cover Index
Littoral Cover Index
Lit. -Rip. Cover Index
EpiDO
-0.27
0.41
-0.44
-0.16
0.14
-0.04
-0.24
-0.08
0.51
0.41
0.50
Cond.
0.42
-0.59
0.52
0.59
-0.37
0.41
0.38
0.25
-0.35
-0.28
-0.34
Turb.
0.53
-0.75
0.54
0.45
-0.29
0.36
0.51
0.31
-0.59
-0.43
-0.57
N total
0.33
-0.53
0.43
0.34
-0.45
0.39
0.33
0.25
-0.41
-0.32
-0.40
P total
0.43
-0.62
0.54
0.34
-0.38
0.34
0.42
0.30
-0.48
-0.39
-0.49
Chl-a
0.47
-0.54
0.28
0.39
-0.32
0.50
0.23
0.24
-0.32
-0.19
-0.31
Secchi mean
-0.51
0.70
-0.47
-0.40
0.40
-0.42
-0.38
-0.29
0.57
0.45
0.57
Phyto.OE
-0.30
0.43
-0.18
-0.23
0.27
-0.28
-0.33
-0.23
0.21
0.23
0.24
Spearman correlation results for landscape and lakeshore condition metrics to geophysical characteristic metrics

Total Ag. Cover (200m)
Forest Cover (200m)
Scrub-shrub Cover (2km)
Agr. on >9% slope (basin)
Sediment Model (basin)
Potential Unit Grazing (basin)
RUSLE Cover Factor (basin)
Shoreline disturbance
Lakeshore cover
Littoral Cover
Habitat complexity
W.S.
Area
0.36
-0.40
0.43
0.54
-0.06
0.06
0.29
0.14
-0.32
-0.31
-0.34
Lake
Polygon
Area
0.30
-0.27
0.13
0.40
-0.01
0.09
0.20
0.14
-0.18
-0.18
-0.19
Lake
Surface
Proport.
-0.25
0.32
-0.58
-0.37
0.11
-0.01
-0.25
-0.08
0.32
0.30
0.35
Elev.
mean
0.03
-0.08
0.47
-0.04
0.07
-0.41
0.19
-0.17
-0.37
-0.33
-0.39
Slope
mean
-0.06
0.22
0.12
-0.09
0.71
-0.44
-0.19
-0.18
-0.09
-0.03
-0.10
Precip.
max.
-0.35
0.49
-0.59
-0.32
0.55
-0.16
-0.30
-0.17
0.44
0.42
0.44
Precip.
mean
-0.48
0.64
-0.74
-0.56
0.56
-0.23
-0.41
-0.23
0.55
0.49
0.55
                                                       46

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                                                                             Region 10 Lakes Assessment
Spearman correlation results to check for autocorrelation for landscape and lakeshore metrics.

Total Ag. Cover (200m)
Forest Cover (200m)
Scrub-shrub Cover (2km)
Agr. on >9% slope (basin)
Sediment Model (basin)
Potential Unit Grazing (basin)
Rusle Cover Factor (basin)
Shoreline disturbance
Lakeshore cover
Littoral Cover
Habitat Complexity
Total
Ag.
1.00
-0.60
0.36
0.62
-0.17
0.24
0.31
0.25
-0.40
-0.38
-0.41
Forest
-0.60
1.00
-0.67
-0.62
0.35
-0.34
-0.67
-0.28
0.65
0.50
0.64
Scrub
0.36
-0.67
1.00
0.47
-0.22
0.06
0.55
0.12
-0.66
-0.57
-0.68
Ag>9
0.62
-0.62
0.47
1.00
-0.22
0.41
0.43
0.21
-0.32
-0.30
-0.33
Sed.Mod.
-0.17
0.35
-0.22
-0.22
1.00
-0.32
-0.10
-0.16
0.10
0.11
0.10
PUG
0.24
-0.34
0.06
0.41
-0.32
1.00
0.14
0.34
-0.01
0.00
0.00
RUSLE
c
0.31
-0.67
0.55
0.43
-0.10
0.14
1.00
-0.01
-0.46
-0.30
-0.44
Shore
Distrub
0.25
-0.28
0.12
0.21
-0.16
0.34
-0.01
1.00
-0.17
-0.21
-0.19
Shore
cover
-0.40
0.65
-0.66
-0.32
0.10
-0.01
-0.46
-0.17
1.00
0.66
0.96
Lit.Cov.
-0.38
0.50
-0.57
-0.30
0.11
0.00
-0.30
-0.21
0.66
1.00
0.81
Habitat
compl.
-0.41
0.64
-0.68
-0.33
0.10
0.00
-0.44
-0.19
0.96
0.81
1.00
                                                     47

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                                                    Region 10 Lakes Assessment
Appendix 3.  Additional Nutrient Analysis for Region 10 NLA
Lakes
Recall that elevated nitrogen and phosphorus levels (categorized as "poor" in Figure 8)
were  observed  in many of  the Region  10 lakes.  Despite the "poor" classification for
some of the  lakes, it is possible that these high nutrient levels are not  resulting in
increased primary productivity (i.e., excessive algal growth) and therefore they might not
be resulting in a negatively  impacted biological response. This appendix evaluates the
possible biological response to the observed nutrient levels within Region 10 lakes.

Background  Information

The Concept of the Limiting  Nutrient

Research has shown that algal growth in a lake will be limited if at least one of the
nutrients (typically either nitrogen or phosphorus) is at or below the literature values for
the Michaelis-Menten half-saturation constants.  Specifically,  the relationship between
the algal growth rate and concentration of a substrate (nutrients) can be described by
the following empirical model:

                                           N
where GN is the algal growth rate depending on nutrient supplies, Gmax is algal growth
rate at optimum temperature, light and nutrient conditions, N is the substrate (nutrient)
concentration, and Ks is the nutrient concentration at which the algal growth rate is one
half (0.5) the maximum rate and is referred to as the  Michaelis-Menten half-saturation
constant.  As can be inferred from this equation, where in-lake nutrient concentrations
are low, algal growth is inhibited, while at  high concentrations algal nutrient demands
are fully  met  and growth  is  limited  by  other  factors (i.e.,  light  availability  and
temperature) (Thomann and Mueller  1987).  While algal growth will still  occur at low
concentrations, algal growth will be drastically reduced.

Algal growth will not be limited  by nitrogen or phosphorus,  however, if water column
nutrients are present in concentration exceeding five times the  respective Michaelis-
Menten half-saturation constants (Thomann and Mueller 1987).  Typical half-saturation
constants for phosphorus and nitrogen are  8 ug/l and 25 ug/l, respectively (EPA/600/3-
85/040).   Accordingly,  nutrient concentrations  that  should saturate  algal  growth
demands  are defined as 40 ug/l and  125 ug/l,  phosphorus and nitrogen,  respectively.
There  are several  ways  that the nutrient  limitation  term can  be  expressed (i.e.,
Multiplicative, Minimum, and  Harmonic  Mean)  (Chapra 1997).   The most common
approach used is where the nutrient in shortest supply is expected to control growth:

                       GN = min{GN-phosphorus, GN-nitrogen)
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                                                     Region 10 Lakes Assessment
Nitrogen to Phosphorus Ratios
Algae  incorporate inorganic  nutrients  from the water in proportion  to  their  cellular
stoichiometry (Chapra 1997).  Specifically, the Redfield ratio is often used to judge the
requirements of algae:

           Oxygen:Carbon:Nitrogen:Phosphorus = 109:41:7.2:1 (by weight)

As can be seen in the equation above,  algal cell stoichiometry  is well represented  by a
Nitrogen to Phosphorus (N/P) ratio of  7.  Thomann  and Mueller  (1987)  reported that
nitrogen could cause algal grown limitations when the N/P ratio is  less than 5, with co-
limitation likely when the ratio is between 5 and 20, and that phosphorus could cause
algal growth limitations at N/P ratios greater than 20. The N/P ratio does not directly
affect algal  productivity.  Rather it  only identifies  the nutrient that could  be  limiting
growth.

Carlson Trophic State Indices (TSI)

A lake's trophic condition is  a measure of abiotic and biotic relationships.  Carlson
(1977) and Havens (1995) introduced a set of lake trophic state indices (TSI), which use
algal biomass as the basis for  trophic  state classification  and reflects a  continuum of
"states" based on a base-2 logarithmic transformation of Secchi  Disk Depth (SD) in
meters, chlorophyll-a (CHL) in ug/l, total phosphorus (TP) in ug/l and total  nitrogen  (TN)
in mg/l:

            TSI(SD)     =10*(6-(lnSD/ln2))
            TSI(CHL)    = 10*(6-((2.04-(0.68*lnCHL))/ln2))
            TSI(TP)     = 10*(6-((ln(48/TP))/ln2))
            TSI(TN)     = 10*(6-((ln(1.47/TN))/ln2))

Calculated TSI  values  represent continuum  from  1 to  100, with  a  value  of "1"
representing the "least productive"  possible condition  and "100" representing the "most
productive" possible condition.   Because  of the logarithmic scale,  a doubling  in the
response occurs at each 10 unit increase of the TSI value.  For example, a TSI(CHL) of
32 would have three orders of magnitude less productivity than a  TSI(CHL) of 62. Of
the four TSI indices listed above, chlorophyll-a (i.e. TSI(CHL)) is the  index of choice for
representing the trophic state of the lake because chlorophyll best  reflects the actual
amount of algal biomass in the water (Carlson 1983).

TSI Graphical Method to Identify Limiting Factors on Lake Productivity

As a general model,  the TSIs  adequately  describe  the relationship between nutrient
availability, algal productivity, and lake transparency.  In theory,  TSI values should result
in the same value regardless of which measurement is used, but in practice, TSI values
vary.  Fortunately, these metrics often vary  in predictable ways that provide insight into
chemical and biological features that are  unique for each lake (Carlson and Havens


                                       49

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                                                        Region 10 Lakes Assessment


2005).  For example, Secchi  depth will not correlate well with chlorophyll if the major
light scattering or attenuation substance in the  water were  clay particles or dissolved
humic color, nor would TP correlate well with chlorophyll where phosphorus was not
limiting algal growth.  Deviations of the indices  can therefore  be used to identify such
situations (Carlson 1991).

Accordingly, Carlson and Havens  (1995)  proposed  a Graphical  Method to  identify
limiting factors on lake algal biomass based on a comparison between the TSI indices.
The basis for this method  is the premise that an observed deviation of chlorophyll TSI
from the  nutrient TSI indicate the  magnitude of nutrient limitation, while deviations  of
TSI(CHL) from TSI(SD) indicates the degree of  light penetration relative to the number
and size of sestonic particles (Figure A-1).  Specifically,  positive values associated with
the y-axis of this Figure (i.e.,  "TSI(CHL)-TSI(TP)") indicated  a  potential nutrient  limiting
condition,  and  negative  numbers indicate  a  potential nutrient surplus  condition.
Similarly, positive  values  associated  with the  x-axis of this  Figure (i.e.,  'TSI(CHL)-
TSI(SD)")  indicated that  the algae are packaged in large colonies resulting in  greater
transparencies than expected, and negative numbers indicate that light  is scattered  or
absorbed by very small particles, such as suspended clays or by dissolved solids.
Figure A-1. Example of possible interpretation of deviation in Trophic State Index (TSI) values using the
Graphical Method.
 Increasing
  Nutrient
 Limitation
 Increasing
  Nutrient
  Surplus
                     • Nutrient Limited
                     • Dissolved Color
                     • Clay Particles
                     > Nutrient Surplus
                     • Non-Algal Turbidity
     • Nutrient Limited
     • Large Algae
     • High Relative Clarity
           75

     • Nutrient Surplus
     • Zooplankton Grazing
     •High Relative Clarity
                                          TSI(CHL)-TSI(SD)
                            Decreasing
                             Relative
                              Clarity
Increasing
 Relative
  Clarity
                                          50

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                                                     Region 10 Lakes Assessment
Results
Measured nutrient levels in the "inference" NLA lakes showed that primary productivity
was primarily influenced by phosphorus concentrations (Figure A-2).  Specifically, algal
productivity was less than expected when phosphorus concentrations were greater than
the Michaelis-Menten saturation cutoff of 40ug/l.  In addition,  most lakes with water
concentrations below this limit showed a high level of potential  phosphorus limitations.
Alternatively, the bottom image in Figure A-2 illustrates that there was not a discernable
pattern  of algal productivity  associated  with nitrogen concentrations,  indicating that
nitrogen is less influential factor affecting lake productivity.

Similarly, calculated  nitrogen  to phosphorus ratios (N/P) indicated a strong productivity
response to  water column phosphorus concentrations (Figure A-3). For example, when
N/P ratio was greater than 20, most lakes had a TSI(CHL)-TSI(TP) value of greater than
zero (Indicating phosphorus  limitations for these lakes).   Lakes with  a N/P ratio less
than 5  clearly  showed  that  nitrogen was  limiting (i.e., TSI(CHL)-TSI(TP) <0).   The
bottom  image  associated with Figure A-3 illustrates  that nitrogen did not have a clear
relationship  between productivity (i.e., y axis)  and the N/P  ratio, indicating that nitrogen
is less influential factor affecting lake productivity.

Figure A-4 indicates that primary productivity within many of the lakes (those located in
the top  left  and right corners of  the figure)  is  potentially limited  by  phosphorus.   In
addition, this figure shows that many of the "man-made" lakes  (those created through
dams or impoundments) had reduced productivity levels  resulting from high turbidity
levels.  Examples are the lakes located in the bottom left corner of the figure.

The bottom  image in Figure A-4 illustrates these lakes grouped into Michaelis-Menten
half-saturation classes.  The group called "P < 5 times Michaelis-Menten half-saturation
constant" (shown by blue diamonds in the figure) was the most centrally located around
the origin of this figure (i.e., 0,0), indicating a  close relationship between observed and
expected productivity. This result could be expected  because phosphorus is present at
potentially limited  concentrations and the model used to evaluate these lakes (i.e., TSI
Difference Graph)  was derived for phosphorus conditions.  Similarly, lakes associated
with the group called "N&P < 5 times  Michaelis-Menten half-saturation constant" (shown
by green squares  in the figure) were located around the  origin.  However, they were
much more scattered around  the origin, indicating less precision in the model.  The one
site associated with the group called "N < 5 times  Michaelis-Menten  half-saturation
constant" indicated that productivity  levels were much lower than  expected based on
phosphorus  concentrations,  a  result that would be expected for a nitrogen  limited
system.

Alternatively, lakes associated with  the  group named  ""Excessive" N&P, TSI(CHL)-
TSI(TP)<-10) (shown by red circles in the figure) were very  deviant from the origin of the
figure, with  most  lakes  located in the bottom left quadrant  of the figure.  This result
indicates that, despite high  levels of nutrients,  the  primary  production response (i.e.,
chlorophyll)  is less than expected, and  that the water column  transparency is  higher


                                       51

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                                                    Region 10 Lakes Assessment


than expected based on level of observed chlorophyll in the water, indicating that non-
algal  turbidity is reducing potential  primary  productivity  in  these  lakes.     Lakes
associated with the group named ""Excessive" N&P, TSI(CHL)-TSI(TP)>-10) (shown by
orange triangles in  the figure) were shown to have  productivity levels slightly  below
expected conditions based on measured phosphorus concentrations.

As mentioned in the main body of the document, a phytoplankton-zooplankton observed
versus expected index (0/E index) was developed for the NLA lakes.  This type of index
estimates biological  condition by  measuring the  agreement  between the  expected
taxonomic composition under reference conditions with that observed at the individual
lakes, thus expressing taxa loss.  Comparing 0/E results of the 90 Region  10 sample
lakes to  the  11  hand-picked reference lakes, measured  0/E index conditions were
statistically (p=0.01) less than reference conditions for lakes with "excessive"  levels of
both nitrogen  and phosphorus (i.e., concentration exceed five  times  the  respective
Michaelis-Menten half-saturation constants) (Figure A-5).

Recall that lake productivity for lakes associated with the  group  ""Excessive" N&P,
TSI(CHL)-TSI(TP)>-10" (the orange  triangles in  Figure A-4) was  at expected  levels
based on nutrient concentrations,  indicating that the low  0/E index  values for these
sites  is a result of  high productivity.  Alternatively, lakes associated with the  group
""Excessive" N&P, TSI(CHL)-TSI(TP)<-10" had very suppressed primary productivity.  It
can be concluded that low 0/E index results for these sites is a result of high non-algal
turbidity levels.  Finally,  biological conditions associated with other three groups were
not statistically different than  reference  conditions, indicating that nutrient limitation
could be occurring within these lakes.
Summary

   •  Despite high observed nitrogen concentrations in R10 "inference" lakes (see
      Figure 8), phosphorus is the nutrient shown to be the primary nutrient influencing
      lake productivity (see Figures A-2 and A-3).

   •  Algal growth was lower than expected in many lakes with high nitrogen and
      phosphorus concentrations, potentially indicating the effects of high turbidity (see
      Figure A-4).  This conclusion applies primarily to sites at man-made lakes.

   •  The biological response  (i.e., 0/E index) was statistically lower for lakes with
      "excessive" nutrient levels (see Figure A-5). This trend was not observed for
      lakes with one or both nutrients below a threshold concentration (i.e., 5 times the
      Michaelis-Menten half-saturation concentration).

   •  Low 0/E index values appear to be a results of either high productivity (for the
      group named "Excessive" N&P, TSI(CHL)-TSI(TP)>-10) or high turbidity (for the
      group named "Excessive" N&P, TSI(CHL)-TSI(TP)<-10).
                                       52

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                                                                      Region 10 Lakes Assessment
Figure A2. Potential nutrient limitations and nutrient concentrations for R10 NLA lakes.
[Positive numbers on the y-axis indicate potential nutrient limitations, and negative numbers indicate
potential nutrient surplus.  The dashed red line represents potential nutrient surplus concentrations based
on five (5) times Michaelis-Menten half-saturation concentrations (i.e., 40 and  125 ug/l for phosphorus
and nitrogen, respectively.)]
                   Positive numbers indicate Potential Nutrient Limitations
                            (i.e. Greater chlorophyll-a response than expected based on nutrient concentrations)
         20
         10 '
                                                                         • Natural Lakes

                                                                         A Man Made Lakes
     o
        -10 -
        -20 -
        -30 -
        -40 -
Negative Numbers indicate Potential Nutrient Surplus
         (i.e. Less chlorophyll-a response than expected based on nutrient concentrations)
                             A
                                                    TP (ug/l)
         50
        40 -
         30 A
         20-
         10 -
     o
     55-10


        -20 -
        -40 -
        -50
Positive numbers indicate Potential Nutrient Limitations
         (i.e. Greater chlorophyll-a response than expected based on nutrient concentrations)
                                                      • Natural Lakes

                                                      A Man Made Lakes
Negative numbers indicate Potential Nutrient Surplus
         (i.e. Less chlorophyll-a response than expected based on nutrient concentrations)
                                                    TN (ug/l)
                            200     A 300       400       500       600      700      800      900      1000
                   500      1000      1500      2000      2500      3000      3500      4000      4500      50)0
                                                    53

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                                                                     Region 10 Lakes Assessment
Figure A-3. Potential nutrient limitations and N/P ratios for Region 10 NLA lakes.
[Positive numbers on the y-axis indicate potential nutrient limitations, and negative numbers indicate
potential nutrient surplus. The left dashed red line  represents the approximate N/P ratio cut-off below
which nitrogen is the limiting nutrient, and the right dashed line represents the N/P ratio above which
phosphorus is a limiting nutrient.  The area between these two dashed lines represents the N/P ratio
where either nitrogen or phosphorus could be limiting algal growth.]
         50
        40 -
         30 -
         20 -
         10 -
        -10 -
        -20 -
        -30 -
        -40 -
        -50
         50
  Positive numbers indicate Potential Nutrient Limitations
          (i.e. Greater chlorophyll-a response than expected based on nutrient concentrations)
             *•
                   20  JO
                   1
                                 50   60   70   80   90  100   110  120   130  140  150  160  170   180  190  2(0
                                                       • Natural Lakes

                                                       A Man Made Lakes
  Negative numbers indicate Potential Nutrient Surplus
           (i.e. Less chlorophyll-a response than expected based on nutrient concentrations)
                                                   NP Ratio
        40 -
         30 -
         20 -
         10 -
     55 -io-
        -20 -
        -40 -
        -50
• Positive numbers indicate Potential Nutrient Limitations
          (i.e. Greater chlorophyll-a response than expected based on nutrient concentrations)
4- A,

•^   »"     ^
\    _• •      u
               1
                0  A2D
                                                       • Natural Lakes

                                                       A Man Made Lakes
                        n  D,
                       *0   40
                            •
                                     60   70   80   90  100   110  120   130  140  150  160  170   180  190  2(0
  Negative numbers indicate Potential Nutrient Surplus
           (i.e. Less chlorophyll-a response than expected based on nutrient concentrations)
                                                   NP Ratio
                                                   54

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                                                                  Region 10 Lakes Assessment
Figure A-4. TSI Difference Graph for Region 10 NLA lakes.
[Positive numbers on the y-axis indicate potential nutrient limitations, and negative numbers indicate
potential nutrient surplus. Positive numbers on the x-axis occurs indicates that chlorophyll is packaged in
large filamentous or colonial groups, and negative numbers indicate potential non-algal turbidity.]
            > Nutrient Limited
            > Dissolved Color
            • Clay Particles
 I -100
 O,

 V)
               -75
                          -50
' Nutrient Surplus
• Non-Algal Turbidity
 CL



 I
 X
 O,
 w
                                             100 -i
                                              75 -
                                              50 -
                                                                  I Natural Lakes
                                                                  A Man Made Lakes
                                                            1 Nutrient Limited
                                                            1 Large Algae
                                                            • High Relative Clarity
                                             -50 -

                                             A


                                             -75 -
                                                           25
50          75

  • Nutrient Surplus
  • Zooplankton Grazing
  • High Relative Clarity
                                                                                           100
                                        TSI(CHL)-TSI(SD)
75 -
50 -
• Nutrient Limited
• Dissolved Color D ,,
• Clay Particles
D
D<^J$
00 -75 -50 £5 L. i
• Nutrient Surplus 
•.
•
• -75-
n N&P < 5 times Michael is-Menten half -saturation constants
o P < 5 times Michaelis-Menten half -saturation constants
• N < 5 times Michaelis-Menten half-saturat'on constants
• "Excessive" N&P, and TSI(CHL)-TSI(TP) < -10
A "Excessive" N&P, and TSI(CHL)-TSI(TP) > -10
0 • Nutrient Limited
• Large Algae
^<$>0 • High Relative Clarity
hx^A^
tfjf-
AAA 25 50 75 1
• Nutrient Surplus
• Zooplankton Grazing
• High Relative Clarity
                                        TSI(CHL)-TSI(SD)
                                                 55

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                                                         Region 10 Lakes Assessment
Figure A-5.  Comparison between calculated Zooplankton and Phytoplankton Observed/Expected Values
(O/E) and TSI Analysis Groups for Region 10 NLA lakes.
\.£.
4
(ton O/E
3
0
3hotoplanl-
3 C
r> b
kton and F
3 C
>. C
Zooplan
3 C
3 'i
\}.£-
0.




\/ \
/\ /



n=46 n= 1

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/
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n=14
	 ^ X
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^


N&P < 5 times P<5 times N<5 times "Excessive" N&P, "Excessive" N&P, Reference Lakes
Michaelis-Menten Michaelis-Menten Michaelis-Menten and TSI(CHL)- andTSI(CHL)-
half-saturation half-saturation half-saturation TSI(TP)<-10 TSI(TP)>-10
constants constants constants
                                          56

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                                                   Region 10 Lakes Assessment

References for Appendix 3.
Carlson, R.E., 1977.A trophic state index for lakes. Limnol. Oceanogr. 22: 361-369.
Carlson, R.E., 1983. Discussion, 'Using Differences Among Carlson's Trophic State
Index Values in Regional Water Quality Assessment,' Water Res. Bull, 19: 307-308.
Carlson, R.E., 1991. Expanding the trophic state concept to identify non-nutrient limited
lakes and reservoirs.  In Taggart, J. (ed.), Enhancing the States' Lake Management
Program. NE Illinois Planning Commission, Chicago, IL.
Carlson, R.E. and K.E. Havens, 2005. Simple Graphical Method for the Interpretation of
Relationships Between Trophic State Variables. Lake and Reservoir Management, 21.
Chapra, S.C., 1997. Surface Water-Quality Modeling.  McGraw-Hill.
EPA/600/3-85/040,  1985.  EPA Document -  Rates, Constants and Kinetics
Formulations in Surface Water Quality Modeling (Second Edition).
Havens, K.E., 1995. Secondary nitrogen limitation in a subtropical lake impacted by
non-point source agricultural pollution. Environ. Poll. 89: 241-246.
Thomann R.V. & J.A. Mueller, 1987. Principles of Surface Water Quality Modeling and
Control. Harper & Row.
                                      57

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                                                   Region 10 Lakes Assessment
Appendix 4.  Fish Tissue—Region 10 results from 2004
National Lakes Fish Tissue Survey
Overview

The National  Lake Fish Tissue Study was completed in 2004. This was the first time
contaminants in lake fish tissue were estimated across the nation.  The study assessed
fish from natural and man-made lakes in the lower 48 states for the following purposes:
1) to  estimate the distribution  of persistent,  bioaccumulative,  and toxic chemical
residues in freshwater fish tissue and 2) to define  a national baseline for assessing
progress of pollution control activities.

Sample lakes were selected using an uneven random design similar to that of the
National  Lakes Survey (Olsen et al. 2009).  Sample lakes were drawn from six  size-
categories ranging from  1 to > 5,000 ha with varying probabilities  of selection.  The
sample design ensured the sampling of rare (i.e. large) lake size classes and the spatial
distribution of sites across states.

Fish tissue was collected from 500  lakes in the summers of 2000-2003 by the EPA and
state agencies following  field protocol and quality assurance directives developed for
the survey (USEPA 2002, USEPA 2004). At each lake,  crews attempted to collect two
fish species composites  of 5 similar-sized adults per site: one for  the human health
endpoint -predator species  analyzed as fillets and one  for the ecological endpoint
analysis - bottom-dweller analyzed as whole fish tissue.  The study analyzed fish tissue
for 268 chemicals:

         •  2 metals (mercury and 5 forms of arsenic)
         •  17 dioxins and furans
         •  159 PCB measurements (out of 209 congeners)
         •  46 pesticides
         •  40 other semi volatile organics (e.g., phenols)

Results for several important chemicals are in Stahl et al. 2009 and comprehensive
information on the survey is available at
http://water.epa.gov/scitech/swguidance/fishshellfish/techguidance/study/index.cfm.
Region 10 Fish Tissue Study

The Region 10 portion of the national lakes survey consisted of 30 sample lakes in the
three contiguous states of Region 10 (excludes Alaska). Sample lakes were  distributed
across the region (Map 1) with seven in Idaho, nine in Oregon and 14 in Washington.
Sites were  distributed among all lake size categories of the survey design but most
were over 500 ha in surface area (Figure A1).  The sample also represents  a range of
elevations with both large and small lakes distributed in range of elevations (Figure A2).
This set of 30 lakes across Region 10 resulted in a very diverse group of sample lakes

                                      58

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                                                      Region 10 Lakes Assessment


ranging from pristine high elevation lakes to low elevation working reservoirs.  The lakes
included in the Region 10 sample are listed at the end of this Appendix.
Map A1.  Locations of 30 lake samples in Region 10.
               Lakes sample by size (ha)
>5000

500-5000

50-500

10-50

5-10

1-5






2

2

2













6












7

















11










         0      2      4     6      8     10     12
                     Lakes count

Figure A1. Count of lakes sampled by size category.
                                        59

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                                                   Region 10 Lakes Assessment
  £
  (0
IUUUUU
•tnnnn
•tnnn
mn

1
I
',
* % •• •
: •
L* " • *
T •
r •
          0     2000    4000    6000    8000

                Watershed Mean Elevation (ft)

Figure A2. Distribution of lakes by size and elevation.
10000
Each  of the 30  lakes was fished  for both a predator and bottom-dwelling species
Samples were successfully collected at 28 of the lakes for predators and at 19 of the
lakes  for bottom-dwellers.  We opted not to extrapolate these results to  a greater
inference population  because of this small sample size and the great difference  in
'weights' among  lakes (see Lake List table).  The data  presented thus expresses only
the results of these sample lakes.  We report the results of total mercury, total PCBs
(the sum of the congeners analyzed), and total DDTs (sum of DDTs, DDEs, and DDDs).
These are important  pollutants present in fish tissue in Region  10  as well as nation-
wide.

    • Mercury is an elemental  metal that is toxic at low levels, affecting the nervous
       system and  brain.  The methylated  form bioaccumulates  in the food chain.
       Atmospheric  deposition  is the largest source of mercury in the environment
       (84%). Other basin scale sources are runoff, point discharges, and mining.
    •
    • DDT: Organochlorine pesticides including DDT were widely used in agriculture of
       the  Columbia  Basin.   DDT  is  highly persistent  in  the  environment,
       bioaccumulates  in the  food chain,  and  is  linked  to  neurological  and
       developmental disorders in birds and other animals. It was banned in 1972, but
       DDT and its breakdown products (ODD, DDE) still persist in the environment.
    •
    • PCBs:  Polychlorinated biphenyls are synthetic compounds that were widely used
       in  electrical   equipment.   These   persistent,  hydrophobic  chemicals
       bioaccumulate in body fat and biomagnify in the food chain. PCBs have many
       congeners and vary in  degree of toxicity. PCB manufacture was  banned  in
       1979  as they are carcinogenic and pose environmental and human health risk.

Data were evaluated  by comparing results to screening thresholds from the  literature
(Table A1). The human health threshold for mercury is a tissue based Water Quality
Criterion  (USEPA  2001).  Threshold  values for PCBs  and  DDTs are from  EPA's

                                      60

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                                                    Region 10 Lakes Assessment


guidance for assessing chemical contaminants and are risk-based thresholds (USEPA
2000). The ecological health screening values are wildlife toxicity thresholds based on
risk to bald eagles and mink as cited in Hinck et al. 2008.


Table A1. Summary of screening value exceedances.
Chemical
Mercury
PCBs
DDTs
Human Health
Screening Value*
300 ppb
12ppb
69 ppb
Ecological Health
Screening Value**
100-300 ppb
11 0-480 ppb
150-3,000 ppb
*from EPA national reporting
** from Hinck et al. 2008
Results
Summaries of results are presented as cumulative percent graphs with the threshold
exceedance value shown in  red for predators  (human health endpoint) and bottom-
dweller samples (ecological endpoint).  Summary statistics are in the  following table
(Table A2)
Table A2. Summary statistics for fish tissue contaminants (units in ppb).
Variable
Mean
Std.
Err.
Median
Std.
Dev.
Skew.
Range
Min.
Max.
N
Predators
Mercury
Total PCBs
Total DDTs
198.18
7.01
62.84
34.85
2.20
52.62
133.00
4.18
3.48
184.39
11.64
278.44
1.30
135.68
5.27
577
57
1481
80
19
40
23.20
.533
0.00
601.00
57.72
1481.40
28
28
28
Bottom-dwellers
Mercury
Total PCBs
Total DDTs
153.92
27.02
151.65
33.01
6.54
62.61
93.60
13.33
10.49
143.90
28.51
272.92
1.86
.85
2.20
581
83
955
50
27
91
14.50
.794
0.00
596.00
84.07
955.91
19
19
19
The  three types of contaminants were commonly detected in the regional samples
(Table A3).  As with the National  Tissue Survey results, mercury  and PCBs were
detected in 100% of the samples for both predators and bottom-dwellers.   The region
was consistent with the national detection for DDT as well.
                                       61

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                                                    Region 10 Lakes Assessment
Table A3. Percent samples above detection limits.
Chemical
Mercury
Total PCBs
Total DDTs
Predators
100%
100%
83% (78%
nationwide)
Bottom Dwellers
100%
100%
90%
(98%nationwide)
Mercury
   •  Mercury levels were generally higher in predator fillet than in bottom-dweller
      whole fish composites.
   •  The human health screening level of SOOppb was exceeded in 20% (6) of
      predator composites.
   •  The low range of ecological endpoint screening value of 10Oppb was exceeded
      in 50% (9) of bottom-dweller composites.
            Mercury in Predators
         100   200  300  400   500

                Hg (ppb wet wt.)
                               600  700
                                           100
                                                  Mercury in Bottom-dwellers
100  200  300  400   500
      Hg (ppb wet wt.)
                     600  700
PCBs
      PCBs were detected in all composites but levels were substantially higher in
      bottom-dweller whole fish than in predator fillet composites.
      The human health screening level of 12ppb was exceeded in 7% (2) of the
      predator composites.
      The ecological screening level of 110ppb was not exceeded.
      Fish of both categories had more PCBs in the larger lakes.
                                       62

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                                                    Region 10 Lakes Assessment
  100
              PCBs in Predators
           20
                 40     60     80
               PCBs (ppb wet wt.)
                                    100
                                           100
                                           O
PCBs in Bottom-dwellers
20     40    60     80
    PCBs (ppb wet wt.)
100
DDTs
      Except for one lake, DDTs in predator composites were below the human health
      screening level.
      The  one outlier  sample with very high levels of DDTs for predators was lake
      Chelan  in eastern Washington.  This is an area of intense long-term agriculture
      where accumulation of these legacy pollutants would not be surprising.
      DDTs in bottom-dweller whole-fish composites  were generally higher than the
      predator fillet samples.
      The  lower ecological screening value of 150 ppb was exceeded in 32% (6) of the
      bottom-dweller composites.
      Levels in neither sample type were substantially related to lake size.
    100
            Total DDT in Predators
                 20    30    40

                 DDT (ppb wet wt.)
                                50
                                     60
                                             100
                                              80
                                            >  60
                                              40
                                              20
                                                    Total DDT in Bottom-dwellers
 200
       400     600

      DDT (ppb wet wt.)
                   800
                        1000
Of the three types of contaminants, the human health threshold for mercury was
exceeded for the most lakes in the Region 10 sample (Table A4). In general, the lakes
sampled in the Region were in somewhat better condition based on human health
thresholds for these contaminants compared to the nationwide results.
                                       63

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                                                    Region 10 Lakes Assessment


Table A4. Percent of lakes exceeding human health thresholds.
Chemical
Mercury
Total PCBs
Total DDTs
Region 10
20%
7%
<4%
National Survey
49%
17%
2%
Recommendations:

The following are recommendations for future national-scale fish tissue studies:

   •  Combine the effort needed to collect fish for a national fish tissue study with the
      efforts of the National Lakes Survey.   The primary areas of overlap  would  be
      sample design and lake selection/evaluation. Collection of fish can be very time
      consuming, plus it requires specialized equipment and expertise. This task could
      not simply be added to the sample day for Lake Survey crews.
   •
   •  Add analyses for selenium and zinc, which would be very useful for fish tissue
      monitoring in the western states.
   •
   •  Increase sample size across the range of lake sizes. This is necessary to ensure
      the ability to make  inferences to the  greater population of lakes at a regional
      scale with reasonable statistical confidence.
                                       64

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                                                  Region 10 Lakes Assessment
References for Appendix 4.
Hinck, J. E., C. J. Schmitt, et al. (2008). Environmental contaminants in freshwater fish
and their risk to piscivorous wildlife based on a national monitoring program.
Environmental Monitoring and Assessment. DOI 10.1007/s10661-008-0331-5.

Olsen, A.R., B.D. Snyder, L.L. Stahl, and J.L. Pitt. 2009. Survey design for lakes and
reservoirs in the United States to assess contaminants in fish tissue. Environmental
Monitoring and Assessment.  150:91 -100.

Stahl, L.L., B.D. Snyder, A.R. Olsen, and J.L. Pitt. 2009. Contaminants in fish tissue
from U.S. lakes and reservoirs: a national probabilistic study. Environmental Monitoring
and Assessment. 150:3-19.

US Environmental Protection Agency (USEPA). 2000. Guidance for assessing
chemical contaminant data for use in fish advisories, volume 2:  Risk assessment and
fish consumption limits, 3rd ed. US EPA, Office of Water, Office of Science and
Technology, Washington, D.C. EPA 823-B-00-008.

USEPA (U.S.  Environmental  Protection Agency).  2001. Water quality criterion for the
protection of human health: methyl mercury.  US EPA, Office of Water, Office of
Science and Technology, Washington, D.C. EPA-823-R-01-001.

USEPA (U.S.  Environmental  Protection Agency).  2002. Field Sampling Plan for the
National Study of Chemical Residues in Lake Fish Tissue. Office of Science and
Technology, EPA-823-R-02-004. USEPA, Washington, D.C.

USEPA (U.S.  Environmental  Protection Agency).  2004. Quality Assurance Report for
the National Study of Chemical Residues in Lake Fish Tissue: Year 1, Year 2, and Year
3 Analytical Data. Office of Water and Office of Science and Technology, Prepared by
DynCorp Environmental MOBIS Contract No. GS-23F-9820, Task68-C-00-137.
USEPA, Washington,  D.C.
                                     65

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                                                                                    Region 10 Lakes Assessment
Table A4.  Sites sampled in EPA Region 10 as part of National Lakes Fish Tissue Survey 2000-2004.
SitelD
OWOW99-0079
OWOW99-0127
OWOW99-0554
OWOW99-0627
OWOW99-0904
OWOW99-1028
OWOW99-1452
OWOW99-0076
OWOW99-0326
OWOW99-0451
OWOW99-0629
OWOW99-0901
OWOW99-1001
OWOW99-1353
OWOW99-1454
OWOW99-1501
OWOW99-0004
OWOW99-0179
OWOW99-0202
OWOW99-0279
OWOW99-0304
OWOW99-0504
OWOW99-0529
OWOW99-0654
OWOW99-0979
OWOW99-1054
OWOW99-1354
OWOW99-1379
OWOW99-1479
OWOW99-1554
Lake Name
Brownlee Reservoir
Palisades Reservoir
Priest Lake
Bear Lake
LoonCr. Lk#1
Enoslk#1
Blackfoot Reservoir
noname gravel pit
Malheur lake
Crater Lake
Lake Umatilla
Elk Lake
Denley Reservoir
Ik Owyhee, elbow
Barney Reservoir
Wickiup Reservoir
Keechelus Lake
Frenchman Hills Ik
Cresent Lake
Nahwatzel Lake
Patterson Lake
Lake Chelan
Rimrock Lake
Lake Dorothy
Lone Lake
Potholes Reservoir
Pend Oreille River
Buffalo Lake
Lake Wallula
Calligan Lake
State
ID
ID
ID
ID
ID
ID
ID
OR
OR
OR
OR
OR
OR
OR
OR
OR
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
WA
Longitude
(DD)
-117.0784
-111.1113
-116.8576
-111.3329
-115.9208
-115.8469
-111.5860
-123.2389
-118.7936
-122.0948
-120.5315
-122.1189
-123.2441
-117.3510
-123.3889
-121.7221
-121.3595
-119.5883
-123.7674
-123.3324
-120.2445
-120.3321
-121.1618
-121.3833
-122.4597
-119.3222
-117.2925
-118.8874
-118.9817
-121.6659
Latitude
(DD)
44.6758
43.2436
48.5679
42.0037
45.0938
45.0996
42.9042
44.5527
43.3098
42.9494
45.7258
44.8230
43.3729
43.4992
45.4452
43.6916
47.3342
46.9819
48.0848
47.2432
48.4589
48.0261
46.6403
47.5843
48.0215
46.9868
48.4300
48.0631
46.0048
47.6052
County
WASHINGTON
BONNEVILLE
BONNER

VALLEY
VALLEY
CARIBOU
LINN
HARNEY
KLAMATH
KLICKITAT
MARION
DOUGLAS
MALHEUR
WASHINGTON
DESCHUTES
KITTITAS
GRANT
CLALLAM
MASON
OKANOGAN
CHELAN
YAKIMA
KING
ISLAND
GRANT
PEND OREILLE
OKANOGAN
BENTON
KING
Design
Wgt.
1.97
1.97
1.97
1.97
904.43
904.43
1.97
233.14
1.97
1.97
1.97
236.78
233.14
9.74
72.44
9.74
9.74
72.44
9.74
72.44
72.44
1.97
9.74
72.44
236.78
1.97
9.74
72.44
1.97
72.44
Sample
Year
2000
2000
2000
2000
2002
2002
2002
2002
2003
2001
2002
2002
2002
2003
2003
2003
2001
1999
1999
2003
2003
2000
2000
2000
2001
2001
2002
2002
2002
2002
Lake Area
(ha)
6070.5
6061 .6
9453.8
28329.0
2.6
3.0
6475.2
7.2
5961.7
5318.0
11697.9
26.0
5.9
4576.9
81.1
4110.4
955.4
138.3
1995.2
111.2
51.6
13091.0
952.0
101.9
34.2
11333.0
935.8
226.2
12960.9
117.0
                                                         66

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