Economic Analysis for the Proposed Clean
Water Act Section 401 Rulemaking
U.S. Environmental Protection Agency
August 2019
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1 Introduction
Under Clean Water Act (CWA) section 401, a federal agency cannot issue a license or permit that may
result in a discharge into waters of the United States unless the authority (state/territory/authorized
tribe/EPA) where the discharge would originate issues a section 401 water quality certification or waives
its authority to do so. States, territories, and authorized tribes are the certifying authorities when the
discharge originates within their jurisdiction, while the EPA is the certifying authority for lands of
exclusive federal jurisdiction and tribal lands where tribes do not have Treatment as a State (TAS)
authorization. Certifying authorities have exercised their section 401 certification authority for various
federal licenses and permits that include, but are not limited to, dredge-and-fill activities in waters of the
United States that require CWA section 404 permits from the U.S. Army Corps of Engineers (Corps),
CWA section 402 industrial and municipal point source discharge permits issued by the EPA, permits
issued under sections 9 and 10 of the Rivers and Harbors Act by the Corps (or the U.S. Coast Guard for
bridges and causeways under section 9), and projects requiring licenses from the Federal Energy
Regulatory Commission (FERC) or the Nuclear Regulatory Commission (NRC).
Section 401 certification decisions have varying effects on certifying authorities and project proponents
(Table 2-1). When certifying authorities waive their section 401 certification authority, the project
proponent faces no additional effects or processing times. However, a waiver does not necessarily
indicate that the activity will comply with applicable water quality standards (WQS) and other CWA
provisions since certifying authorities may waive certification for a variety of reasons, including a lack of
resources to evaluate the request. The certifying authority can also waive its authority by exceeding the
reasonable period of time for certifications, which is up to one year.1 Conversely, when certifying
authorities deny section 401 certification, the effects on project proponents can be significant, including
potential processing delays and changes in project viability (see Section 4.1.3). However, the certification
process provides certifying authorities with an important tool to help protect water quality of federally
regulated waters within their borders in collaboration with federal agencies (U.S. EPA, 2019a). Finally,
when certifying authorities grant certifications or grant with conditions, the effects on project proponents
vary depending on request review time, license/permit type, and required conditions (if applicable).
2 Overview of Current Practice
The CWA section 401 certification process allows the certification authority (state/territory/tribe/EPA) to
protect its water quality from adverse effects caused by potential discharges from federally licensed or
permitted activities. Under current practices, certifying authorities determine whether the proposed
activity and discharge requiring a federal license or permit is consistent with technology-based effluent
limitations (CWA section 301), water quality-based effluent limitations (CWA section 302), water quality
standards and implementation plans (CWA section 303), national standards of performance (CWA
section 306), toxic and pretreatment effluent standards (CWA section 307). When issuing a certification,
authorities may include conditions necessary to assure compliance with those enumerated provisions of
the CWA and any other appropriate requirement of state law.2 The certifying authority is determined
based on the location (e.g., state, U.S. territory, tribal land) where the discharge originates. All states and
U.S. territories have section 401 certification authority automatically. Tribes receive section 401
certification authority upon approval of TAS by the EPA. The EPA is responsible for section 401
1	33 U.S.C. § 1341(a)(1)
2	33 U.S.C. § 1341(d)
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certification decisions on tribal lands where tribes do not have TAS and on lands with exclusive federal
jurisdiction.
Section 401 gives the certifying authority four options: grant, grant with conditions, deny, or waive
certification. Under current practice, certifying authorities make these determinations as follows:
1)	Grant certification. Granting section 401 certification to a project proponent for a federal license
or permit signifies that the certifying authority has determined that the proposed activity and
discharge will comply with WQS, other relevant provisions of the CWA, and any other
appropriate requirement of state law. When granted, the federal license or permit may issue.
2)	Grant certification with conditions. Certifying authorities may include limitations or conditions
in their certifications as necessary to ensure compliance with WQS, other provisions of the CWA,
and any other appropriate requirement of state law. Once section 401 review is triggered, the
certifying authority may consider and impose conditions on the discharge and the project activity
in general to ensure compliance with the CWA and any other appropriate requirement of state
law. Some courts have concluded that the federal agency must include all of the certifying
authority's conditions as part of the resulting license or permit. In practice, some certifying
authorities have included conditions on a section 401 certification that are not within the proposed
scope of certification. When granted with conditions, the federal license or permit may issue.
3)	Deny certification. Certifying authorities deny certification if they cannot certify that discharge
will comply with WQS and other applicable sections of the CWA. A certification denial prohibits
the federal agency from issuing the license or permit. In practice, some certifying authorities
have issued denials for reasons that extend beyond water quality and are not within the proposed
scope of certification. When denied, the federal permit may not issue.
4)	Waive review. Certifying authorities may waive section 401 certification, either explicitly
through notification to the project proponent or implicitly by failing or refusing to act on the
certification request within the allotted timeframe. Although the CWA establishes a time limit of
"any reasonable period not to exceed one year" for certifying authorities to complete their section
401 certification analysis and decision, the EPA's existing certification regulations3 specify that
the licensing or permitting agency determines the "reasonable" time period within that one-year
timeframe. Under section 401, the clock starts upon the receipt of a request for certification. In
practice, certifying authorities have adopted the practice of relying on "complete applications" to
start the clock, as defined by the certifying authority. A waiver does not indicate a certifying
authority's opinion regarding the water quality implications of a proposed activity or discharge
since a certifying authority may waive certification for a variety of reasons, including a lack of
resources to evaluate the request. When certifying authorities waive their section 401 authority,
the federal licensing or permitting agency may continue with its own process and issue the license
or permit without an affirmative certification from the certifying authority.
Table 2-1: Summary of potential section 401 certification decision effects on project proponents and certifying
authorities undercurrent practice
Section 401
Decisions
Magnitude of Potential
Effect on Project
Proponents
Effect on Certifying Authority / WQS
Potential
Processing
Time Effects
Review waived
within, or at
expiration of,
None - project proponent
not subject to conditions
from certifying authority
Varies - waiver does not necessarily
indicate that the activity will comply
with applicable WQS
No delay
3 40 CFR § 121.16(b)
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Table 2-1: Summary of potential section 401 certification decision effects on project proponents and certifying
authorities undercurrent practice
Section 401
Decisions
Magnitude of Potential
Effect on Project
Proponents
Effect on Certifying Authority / WQS
Potential
Processing
Time Effects
reasonable period
of time



Grant without
conditions issued
within reasonable
period of time
None
Certifying authority has determined that
the proposed activity will comply with
WQS and other CWA provisions
No delay
Grant with
conditions issued
within reasonable
period of time
Varies depending on
whether conditions are
water quality related
Conditions allow the certifying authority
to ensure compliance with applicable
WQS and other CWA provisions
No delay
Denials issued
within reasonable
period of time
High - project proponent
must either discontinue the
project or modify plans;
project proponent may also
challenge denial in court
Denial prohibits license/permit issuance
for the activity that does not comply
with WQS and other CWA provisions
Potential for
extended delay
/ project
withdrawal or
modification
Grant without
conditions issued
beyond reasonable
period of time
Low to medium, depending
on how long after the
reasonable period of time
Certifying authority has benefited from
more time than statute allows and
determined that the proposed activity
will comply with WQS and other CWA
provisions
Delayed
beyond
reasonable
period of time
Grant with
conditions issued
beyond reasonable
period of time
Medium to high, depending
on how long after the
reasonable period of time
and whether conditions are
water quality related
Certifying authority has benefited from
more time than statute allows;
conditions allow the certifying authority
to ensure compliance with applicable
WQS and other CWA provisions
Delayed
beyond
reasonable
period of time
Deny beyond
reasonable period
of time
High
Certifying authority has benefitted from
more time than statute allows; denial
prohibits license/permit issuance for the
activity that does not comply with WQS
and other CWA provisions
Delayed
beyond
reasonable
period of time
In summary, granting certification, with or without conditions, allows the federal agency to issue the
license or permit consistent with any conditions of the certification. Denying certification prohibits the
federal agency from issuing the license or permit. Waiving certification allows the license or permit to be
issued without comment from the certifying authority.
Certifying authorities have exercised their section 401 certification authority for dredge-and-fill activities
in waters of the United States that require section 404 permits from the Corps, for section 402 industrial
and municipal point source discharge permits issued by the EPA, for permits issued under sections 9 and
10 of the Rivers and Harbors Act by the Corps or U.S. Coast Guard, and for projects requiring FERC or
NRC licenses. Typically, certifying authorities conduct section 401 certification review at the same time
as the federal agency's license or permit review. Some certifying authorities have established joint
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application procedures with federal agencies to ensure simultaneous review (e.g., Alabama,4 New York,5
Oregon,6 South Carolina7).
The federal licensing or permitting agency may set the certification response time limit to any "reasonable
period of time (which shall not exceed one year)."8 The certifying authority waives section 401
certification review if it does not respond within the allotted time limit. Federal agencies have established
varying timeframes up to one year. For example, the Corps' federal regulations provide a 60-day response
period for section 401 certification reviews associated with section 404 permits.9 FERC federal
regulations provide a full year for certifying authorities to act on a certification request.10 The EPA
regulations governing the certification of federally issued section 402 NPDES permits provide certifying
authorities 60 days to act on section 401 certification requests associated with a draft permit.11 The EPA's
generally applicable regulations suggest a time limit of six months.12 Certifying authorities have used
different approaches when they need more time for review than has been set by the federal agency or
authorized by section 401, including:
1)	Determine that a request is "incomplete" until the certifying authority is prepared to issue the
certification.
2)	Restart the clock by coordinating with the project proponent to withdraw and resubmit the request
for certification. The recent Hoopa Valley Tribe v. Federal Energy Regulatory Commission
decision (see Section II.F.4.b of the preamble) concluded this practice is inconsistent with section
401.
3)	Deny section 401 certification "without prejudice" when they lack data necessary for their
analysis and then encourage the project proponent to resubmit the request once data gaps have
been addressed.
Section 401 certification authority rests with the jurisdiction where the discharge originates. However,
other jurisdictions downstream or otherwise potentially affected by the discharge have an opportunity to
provide comments on the federal license or permit. If the EPA Administrator determines at his or her
discretion that a discharge subject to section 401 certification may affect water quality of neighboring
jurisdictions, the EPA is required to notify those jurisdictions and allow them to submit their views and
objections about the proposed license or permit and associated section 401 certification.13 These
jurisdictions may also request that the federal licensing or permitting agency hold a hearing at which the
EPA also submits its evaluations and recommendations concerning the neighboring jurisdiction's
objections. The federal agency must then condition the license or permit to ensure compliance with water
4	http://www.adem.state.al.us/DeptForms/Forml66.pdf
5	https://www.nan.usace.army.mil/portals/37/docs/regulatory/geninfo/genp/jointappinstruc.pdf
6	https://www.nwp.usace.army.mil/Missions/Regulatory/Apply/
7	https://scdhec.gov/environment/water-quality/water-quality-certification-401-process-explained
8	33 U.S.C. § 1341(a)(1)
9	33 CFR § 325.2
1018 CFR § 4.34(b)(5)(iii)
11	40 CFR § 124.53(c)(3)
12	40 CFR § 121.16(b): period shall generally be considered to be 6 months, but in any event shall not exceed 1 year.
13	33 U.S.C. §1341(a)(2)
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quality requirements of neighboring jurisdictions. Recommendations from neighboring jurisdictions do
not have the same weight as conditions from the certifying authority. The federal agency does not need to
follow specific recommendations from neighboring jurisdictions and can instead develop its own
measures to comply with water quality requirements. However, the federal agency cannot issue the
license or permit if it cannot ensure compliance with neighboring jurisdictions' water quality
requirements.14
The Association of Clean Water Administrators15 recently surveyed the 50 states about their section 401
certification processes, including the average number of certification requests and denials, certification
timeliness, request completeness, and best practices (ACWA, 2019). Thirty-one states provided survey
responses. Survey responses indicate that the average length of time for states to issue a certification
decision once they receive a complete request is 132 days. Responding states cited incomplete requests as
the most common reason for delays. Survey results also indicate that denials are uncommon, with 17
states averaging zero denials per year and other states issuing denials rarely (ACWA, 2019). A 2011
review of Wisconsin's section 401 certification program found that Wisconsin denied approximately 2
percent of projects in 2009 and 2010 (ASWM, 201 la). During this timeframe, the most common cause
for denial was the availability of a practical alternative that would better allow the project proponent to
avoid or minimize impacts (ASWM, 201 la). A similar review of Delaware's section 401 certification
program found that Delaware had not issued any denials in the last few years (ASWM, 201 lb).
Additional summary survey information was made available by the Western States Water Council
(Western States Water Council, 2014). This survey further suggests that denials are uncommon, and most
decision are made between 40-90 days.
While these summary survey data do not adhere strictly to the EPA's requirements regarding data and
information quality (US EPA, 2001) (i.e. requirements guiding data generation and acquisition, data
validation and usability, etc.), due to a lack of existing data on section 401 processes these results are
being used for context when assessing the potential impacts of this proposed rule.
3 Overview of Federal Licenses/Permits and Certifying
Authority Responses
Under section 401, certifying authorities decide whether to grant, grant with conditions, deny, or waive
section 401 certifications. Certifying authorities typically conduct section 401 certification review at the
same time as the federal agency's license or permit review to minimize delay and issue a section 401
certification in a timely manner.
The majority of federal permits that are subject to section 401 certification are CWA section 404 permits
issued by the Corps. As described in Section 2, other federal licenses/permits include, but are not limited
to, CWA section 402 permits issued by the EPA, FERC hydropower and pipeline licenses, Rivers and
Harbors Act sections 9 and 10 permits, and NRC licenses. For a list of state websites with public
documentation of licenses/permits and section 401 certification documents, see Table 8-1 in Appendix A.
The EPA requests comment on the completeness of this summary of federal agencies involved in section
401 permitting.
14	33 U.S.C. §1341(a)(2)
15	ACWA is a national organization representing the State, Interstate and Territorial officials who are responsible for
the implementation of surface water protection programs throughout the nation.
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Table 3-1 presents summary permit information, both available publicly and provided to the EPA by the
federal agency, specific to section 401.
Table 3-1: Permit summary data by certifying authority
License/Permit Type
Annual Average #
Licenses/Permits Issued3
Time Provided for Section
401 Review
CWA Section 404
50,159 general;
2,511 individual"
60 days - 1 yearh
Rivers and Harbors Act
Section 10
8,607 general;
1,670 individual0
60 days - 1 yearh
CWA Section 402
16 general;
150 individual
60 days'
Rivers and Harbors Act
Section 9
30-356
1 year6
Federal Energy
Regulatory
Commission license
47f
1 yearJ
Nuclear Regulatory
Commission license
3s
1 year
a.	Includes all permits issued by the relevant federal agency (section 401 certification either granted, granted with conditions, or waived)
b.	Estimate based on the annual average number of 404 permits from 2013-2018 based on counts provided by the Corps.
c.	Estimate based on the annual average number of section 10 permits from 2013-2018 based on counts provided by the Corps.
d.	Estimate based on the annual average of EPA-issued 402 permits from 2012-2017.
e.	Estimate based on personal communication with Shelly Sugarman, Bridge Permits and Policy Division, Coast Guard Bridge Program.
f.	Estimate based on annual average license issuance for hydropower facilities/major natural gas pipelines from 2013-2018 (FERC, 2019a, 2019b)
g.	Estimate based on annual average number of licenses for operating nuclear power reactors from 2013 to 2018 (NRC, 2018)
h.	Timeframe depends on Corps district. Corps regulations (33 CFR 325.2) specify that waiver could occur if the certifying authority does not
issue a decision within 60 days. In practice, many Corps districts allow a longer timeframe.
i.	40 CFR §124.53(c)(3), unless unusual circumstances warrant a longer timeframe,
j. 18 CFR § 4.34(b)(5)(iii)
3.1 Section 404 Permits
The Corps issues two types of CWA section 404 permits, general and individual. General permits are for
activities that are similar in nature, cause only minimal adverse environmental impacts when performed
separately, and have only minimal cumulative environmental impacts (USACE, 2017). There are three
types of general permits: Nationwide Permits (NWPs), Regional General Permits (RGPs), and
Programmatic General Permits (PGPs). The most common general permits are NWPs, which provide
streamlined review and authorization for activity categories that are determined by the Corps to have
minimal adverse impacts on the aquatic environment. NWPs automatically expire, unless renewed, every
five years. The Corps has 52 NWPs as of March 2017, which are effective through March 18, 2022
(USACE, 2017). RGPs are issued on a regional basis by an individual Corps district (USACE, n.d.-a).
There is no standard set of RGP activity categories that applies to all states, and there are varying
numbers of RGPs issued by different Corps Districts. PGPs authorize states with regulatory programs
similar to the 404 program to issue permits for certain activity categories, which differ from the activities
covered under NWPs, rather than requiring the Corps to directly issue the 404 permits (USACE, n.d.-a).
Certifying authorities exercise their section 401 certification authority at various levels of stringency for
section 404 permits. Almost all states issue "programmatic" or "blanket" section 401 certification for
activities covered under certain NWPs and RGPs. When a certifying authority issues blanket certification,
all actions or activities that meet the requirements of the NWP or RGP receive section 401 certification
without additional review. Certifying authorities can issue blanket certifications with or without
conditions. Some states condition certain NWPs to address concerns that the NWP requirements do not
sufficiently prevent potentially authorized activities from causing or contributing to exceedances of WQS
and criteria. NWPs that require additional review, for which the project proponent needs to submit a
section 401 request, vary by state. For example, Colorado does not require any additional review on
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NWPs (Colorado Environmental Records, n.d.), whereas California may require additional review for 40
NWPs (California Water Boards, 2018). This variability is due to multiple factors, including specific
NWP conditions, differing project impacts, and applicable WQS. As for RGPs, states generally issue
blanket certifications with or without conditions. Additional review is usually not required because the
Corps often incorporates conditions in RGPs that meet WQS.
The Corps issues individual 404 permits for projects with more than minimal individual or cumulative
impacts. Individual permits are subject to additional project specific review and involve a more
comprehensive public interest review (USACE, n.d.-a). After reviewing the individual permit request, the
certifying authority (state/territory/tribe/EPA) typically develops a section 401 certification with
additional conditions that project proponents must meet to comply with sections 301, 302, 303, 306, and
307 of the CWA, as well as any other appropriate requirement of state law. This process allows the
certifying authority to ensure that the 404 permit complies with WQS, other applicable CWA provisions,
and any appropriate requirement of state law.
Some states require additional review of any permit, general or individual, that would authorize
discharges to certain waters or is related to a certain activity. For example, Arizona reviews projects that
would affect an "Outstanding Arizona Water," an impaired or non-attaining water, or a lake (Arizona
Department of Environmental Quality, 2018). North Carolina reviews all projects related to oil and gas
structures on the outer continental shelf, coal mining, and stormwater management facilities (North
Carolina Department of Environmental Quality, n.d.).
Certifying authorities typically review each request for an individual 404 permit.
3.2 Section 402 NPDES Permits
The National Pollutant Discharge Elimination System (NPDES) permit program addresses water
pollution by regulating point sources that discharge pollutants to waters of the United States. Table 3-2
lists non-404 federal permits, including the section 402 NPDES permit program, and licenses subject to
section 401 certification authority as well as the types of activities that each license/permit type
authorizes. For 402 NPDES permits, section 401 certification only applies when the EPA is the permitting
authority. A state may receive authorization for one or more of the NPDES program components. EPA
retains authorization for the program components for which a state is not authorized, and requests 401
certification from the state/tribe. For example, if the state has not received authorization for federal
facilities, EPA would continue to issue permits to federal facilities (e.g., military bases, national parks,
federal lands, etc.), and would request 401 certification for that permit. The EPA is the sole permitting
authority for three states (Massachusetts, New Hampshire, and New Mexico), the District of Columbia,
all U.S. territories except the Virgin Islands, and federal and tribal lands. All other states16 and the Virgin
Islands have authorization to issue 402 permits for either the entire NPDES program or certain
components. NPDES program components include the NPDES permit program, authority to regulate
federal facilities, state pretreatment program, general permits program, and biosolids program (U.S. EPA,
2019b). Table 3-2 contains the number of states and territories that issue section 401 certifications on 402
permits for each NPDES program component. Figure 8-1 in Appendix A shows a map of states and
territories and their NPDES program status.
The two basic types of NPDES permits are individual and general permits. Typically, dischargers seeking
coverage under a general permit are required to submit a notice of intent (NOI) to be covered by the
permit. The EPA's general permits cover discharges meeting general permit requirements in areas where
16 Idaho is authorized to issue NPDES permits for individual industrial permits, individual municipal permits, and
the state pretreatment program. Idaho is projected to be fully authorized by July 1, 202 f.
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the EPA is the NPDES permitting authority (see U.S. EPA, 2017). The EPA works with certifying
authorities during the development of 402 general permits to ensure that all certifying authorities subject
to the EPA's general permits will issue section 401 certification for the general permit. For EPA-issued
individual and general NPDES permits, certifying authorities can add conditions to ensure that the EPA's
general permit requirements are consistent with WQS, applicable CWA provisions, and other appropriate
requirements of state law, and the EPA must incorporate these conditions into the general permit.
3.3	FERC
Projects requiring FERC licenses, which cover interstate natural gas pipelines and hydropower projects
(FERC, 2018), are also subject to section 401 authority. See Figure 8-2 in Appendix A for a map of
interstate pipelines in the contiguous United States. Certifying authorities typically review each section
401 request for projects requiring a FERC license rather than waiving review. Certifying authorities have
inadvertently waived their section 401 authority for projects requiring a FERC license by exceeding the
one-year time limit (see Sections 9.2 and 9.3). Although section 401 denials for projects requiring FERC
licenses are rare, a few cases have garnered attention. Section 4.1.1 discusses recent section 401 denials
for natural gas pipelines.
3.4	Rivers and Harbors Act Sections 9 and 10
Rivers and Harbors Act sections 9 and 10 permits cover construction of structures in navigable waters.
Section 9 permits authorize construction of bridges and causeways, which fall under U.S. Coast Guard
jurisdiction, as well as dams and dikes, which fall under Corps jurisdiction ,17 Section 10 permits
authorize construction of wharfs, piers, dolphins, booms, weirs, breakwaters, bulkheads, and jetties,
which all fall under Corps jurisdiction (USACE, n.d.-b). The EPA found no examples where states,
territories, or authorized tribes waived their section 401 authority to review projects requiring these
permits.
3.5	NRC
NRC issues licenses for nuclear power plants, which are all subject to section 401 review. Figure 8-3 in
Appendix A shows the locations of all nuclear power plants in the United States, which mostly lie east of
the Mississippi River (U.S. Energy Information Administration, 2019). The EPA found no examples
where certifying authorities waived their section 401 authority to review actions or activities requiring
NRC licenses.
17 33 U.S.C. §401
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Table 3-2: Non-404 permits and licenses subject to section 401 water quality certification
Federal license/permit
Authorities that issue
Section 401 certifications
Permitted activities
402
NPDES Individual permits
3 states, D.C., all 8
territories except Virgin
Islands, and tribes with
TAS1
Discharges from individual wastewater treatment plants;
concentrated animal feeding operations; pesticide
requests; and stormwater from municipal separate storm
sewer systems, construction, and industrial activities.
NPDES General permits
4 states, D.C., all 8
territories except Virgin
Islands, and tribes with
TAS1
Discharges from wastewater treatment plants;
concentrated animal feeding operations; pesticide
requests; and stormwater from municipal separate storm
sewer systems, construction, and industrial activities.
Federal facilities
8 states, D.C., all 8
territories except Virgin
Islands, and tribes with
TAS1
Discharges from federal facilities.
Pretreatment
13 states, D.C., all 8
territories, and tribes with
TAS1
Discharges from industrial users to publicly owned
treatment works (POTWs).
Biosolids
42 states, D.C., all 8
territories, and tribes with
TAS1
Discharge of sewage sludge from wastewater treatment
plants.
Federal Energy Regulatory Commission (FERC)
FERC license
See map in Figure 8-2
Construction and operation of interstate natural gas
pipelines and hydroelectric projects.
Rivers and Harbors Act Sect. 9 and 10
Section 9 permit
All states, D.C., territories,
and tribes with TAS
Construction of bridge, dam, dike, or causeway that results
in discharge to navigable waters.
Section 10 permit
All states, D.C., territories,
and tribes with TAS
Construction of wharf, pier, dolphin, boom, weir,
breakwater, bulkhead, jetty or other structures that results
in discharge to navigable waters.
Nuclear Regulatory Commission (NRC)
NRC license
See map in Figure 8-3
Construction and operation of nuclear power plants.
'U.S. EPA (2019b).
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4 Section 401 Certification Case Studies
This section focuses on denials and other high-profile section 401 certification cases.
4.1 Denials
This section describes four recent energy-related section 401 certification denial cases. The four cases
presented in this section include three natural gas pipelines in New York State (Section 4.1.1) and a coal
export terminal in Washington State (Section 4.1.2). Section 4.1.3 discusses impacts of denials on
certifying authorities and project proponents.
4.1.1 New York Natural Gas Pipelines
FERC regulates natural gas pipeline market entry under the Natural Gas Act by issuing a section 7(c)
certificate of public convenience and necessity authorizing the construction of new facilities (Weiler and
Stanford, 2018). Under the Energy Policy Act of 2005,18 FERC has the authority to set a schedule for
federal and state agencies to reach a final decision on requests for authorizations necessary for proposed
natural gas pipeline projects. The Energy Policy Act of 2005 also specified that in cases in which another
agency delays issuing a required permit, the United States Court of Appeals for the D.C. Circuit has
exclusive jurisdiction to address the matter.
FERC recently granted NGA section 7(c) certificate authorization for the construction of three different
interstate natural gas pipeline projects in New York State. FERC conducted environmental reviews,
including analyses of each pipeline project's impact on water resources, and found that construction and
operation of each pipeline project would result in no significant environmental impacts (Weiler and
Stanford, 2018). The New York State Department of Environmental Conservation (NYSDEC) took a
contrary position and denied issuance of section 401 certification for all three pipeline projects (Weiler
and Stanford, 2018). Table 4-1 summarizes the three natural gas pipeline cases. Appendix B provides
additional details about each case.
Table 4-1: Section 401 certification denial cases
Project
Description
Request Timeline
Reasons for Denial
Current Status
Constitution
Pipeline: 124-mile
pipeline from
Susquehanna
County, PA to
Schoharie County,
NY that would
provide 650,000
dekatherms/day
of firm
transportation
service.
Project proponent filed 401
request on August 22, 2013.
NYSDEC requested additional
information until it considered
the request complete in
December 2014. In April 2015,
NYSDEC requested the project
proponent to withdraw and
resubmit the request to restart
the one-year time limit.
NYSDEC issued a
denial in April 2016,
stating the request
failed to address
significant water
resource impacts that
could occur from the
project and failed to
demonstrate
compliance with NYS
WQS.
Proponent appealed NYSDEC's
decision to the Second Circuit,
but the court upheld the
denial. The Hoopa Valley ruling
(see Section II.F.4.b of
preamble) opened the
possibility that NYSDEC waived
its 401 certification authority
by exceeding the one-year time
limit. In February 2019, U.S.
Court of Appeals granted
FERC's request to remand the
pipeline question for a new
review, which is ongoing.
NYSDEC informed FERC in April
2019 that they would appeal
any decision that waives the
state's section 401 certification
review.
18119 Stat. 594; P.L. 109-58; 42 U.S.C. § 15801
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Table 4-1: Section 401 certification denial cases
Project
Description
Request Timeline
Reasons for Denial
Current Status
Valley Lateral
Pipeline: 7.8-mile
extension of an
existing pipeline
in Orange County,
NY to serve a new
gas-powered
power plant in
Wawayanda, NY.
Project proponent filed section
401 request on November 13,
2015.	NYSDEC initially deemed
the request incomplete and
requested additional
information through August
2016.	Project proponent urged
NYSDEC to complete its review
after receiving FERC
authorization in November
2016, but NYSDEC said it had
until August 2017 to make a
determination. In December
2016, the D.C. Circuit stated that
NYSDEC's delay operated as a
section 401 waiver and enabled
Millennium to bypass NYSDEC.
In August 2017,
NYSDEC denied the
project proponent's
request on the
grounds that FERC's
environmental review
of the project was
inadequate because it
failed to consider
downstream
greenhouse gas
emissions from the
electric generator
shipper.
Project proponent waited a
few months after the D.C.
Circuit's decision before
submitting a request to FERC in
July 2017 to proceed with
construction, arguing that
NYSDEC had waived its section
401 authority. In September
2017, FERC issued an order
stating that NYSDEC had
waived its section 401
authority by exceeding the
one-year time limit and issued
a Notice to Proceed with
Construction. NYSDEC
appealed FERC's decision to
the U.S. Court of Appeals, but
the court ruled in FERC's favor.
In July 2018, FERC authorized
the project proponent to place
the new pipeline into service.
Northern Access
Pipeline: Project
includes 99 miles
of pipeline from
Sergeant
Township, PA to
Elma, NY and
ancillary facilities
to expand firm
service by
847,000
dekatherms/day.
Project proponent filed section
401 request in February 2016.
After NYSDEC did not notify the
project proponent about
whether the request was
complete, they agreed to a
March 2, 2016 receival date if
NYSDEC issued a decision within
the next year. In January 2017,
NYSDEC asked the project
proponent to amend the prior
agreement so that April 8, 2016
would be the receival date
instead of March 2, and the
project proponent complied.
After receiving the amendment,
NYSDEC deemed the request
complete.
In April 2017, NYSDEC
denied the project
proponent's request
for failing to
demonstrate
compliance with state
WQS because the
project did not
adequately mitigate
impacts to water
quality and thus
jeopardized biological
integrity and impeded
best uses of affected
waterbodies.
On August 6, 2018, FERC ruled
that NYSDEC waived its section
401 certification authority by
exceeding the one-year time
limit. NYSDEC asked FERC to
reconsider the decision. On
April 2, 2019, FERC upheld its
prior decision that NYSDEC
waived its section 401 review
and stated that the recent
Hoopa Valley decision (see
Section II.F.4.b of preamble)
reinforced their determination.
See Appendix B for additional details and sources.
4.1.2 Millennium Bulk Terminals in Washington State
Millennium Bulk Terminals—Longview, LLC (Millennium) proposed to construct and operate an export
terminal in Cowlitz County, Washington along the Columbia River (U.S. Army Corps of Engineers,
2016). The proposed export terminal would receive rail shipments of coal from the Powder River Basin in
Montana and Wyoming, and the Uinta Basin in Utah and Colorado. Export terminal employees would
receive, blend, and load coal onto vessels in the Columbia River for export. The proposed export terminal
would have a maximum throughput of 44 million metric tons of coal per year. The purpose of the
proposed project was to transfer western U.S. coal from rail to ocean-going vessels for export to Asia.
12

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Millennium identified demand within the Asian market for western U.S. low-sulfur subbituminous coal
and determined that existing West Coast terminals were unavailable to serve this need (USACE, 2016).
4.1.2.1	Water Quality Certification Denial
Millennium first submitted a 404 permit request to the Corps and a section 401 request to the Washington
Department of Ecology in February 2012 but withdrew the requests in February 2013 with the intention
of resubmitting after completion of the environmental review process (Washington Department of
Ecology, 2019). Millennium resubmitted its section 401 request in July 2016. The Corps (2016) issued a
draft Environmental Impact Statement (EIS) for the proposed project under the National Environmental
Policy Act in September 2016. Cowlitz County and the Washington Department of Ecology also issued
an EIS under the State Environmental Policy Act in April 2017 (Washington Department of Ecology,
2019). After reviewing these reports, the Washington Department of Ecology denied section 401
certification for the project in September 2017. The denial stated that the project would have unavoidable,
adverse impacts to the local environment, transportation, public health, the local community, and tribal
resources as a result of not meeting state WQS, and that the project would not meet state WQS
(Washington Department of Ecology, 2019).
4.1.2.2	Current Status
To date, all court challenges to the section 401 certification denial have resulted in rulings favorable to the
Department of Ecology. Millennium appealed the section 401 certification denial to Cowlitz County
Superior Court and the Washington State Pollution Control Hearings Board. The Cowlitz County
Superior Court dismissed Millennium's appeal in March 2018, stating that the appeal must first be heard
by the Pollution Control Hearings Board (Washington Department of Ecology, 2019). The Pollution
Control Hearings Board ruled in Washington Department of Ecology's favor in August 2018.19
Millennium submitted a second appeal to the Cowlitz County Superior Court following the Pollution
Control Hearings Board's ruling. Millennium also filed a challenge in Federal District Court against the
Washington Department of Ecology director, the Department of Natural Resources commissioner, and the
Washington governor, arguing that the section 401 certification denial interfered with foreign and
interstate trade (Fairbanks, 2018). A federal judge dismissed the case against the Department of Natural
Resources commissioner in October 2018, but the case against the Washington Department of Ecology
director and the Washington governor will continue (Fairbanks, 2018). In December 2018, a U.S. District
Court ruled against a portion of Millennium claims by determining that the State of Washington's section
401 certification denial did not violate two federal laws, the Interstate Commerce Commission
Termination Act and the Ports and Waterways Safety Act.20
Although Washington denied section 401 certification for the proposed export terminal, the Corps
restarted the federal permitting and environmental review process in November 2018 (Washington
Department of Ecology, 2019). This decision prompted the Washington State Attorney General to send a
letter to the Corps Lieutenant General expressing concern that restarting the permitting process undercuts
the state/federalism partnership and section 401 of the CWA (Ferguson, 2018). The Corps' efforts to
update the EIS and coordinate compliance with Section 106 are ongoing.21
19	Millennium Bulk Terminals—Long view. LLC v. State of Washington, Department of Ecology, PCHB No. 17-090
(2019)
20	Case No. 3:18-CV-05005-RJB, United States District Court, Western District of Washington at Tacoma (2019)
21	Personal communication with Patricia Graesser, USACE Public Affairs Supervisor
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4.1.3 Impacts of Denials
4.1.3.1	On Certifying authorities
Certifying authorities deny certification if they cannot certify that the discharge will comply with WQS
and other applicable sections of the CWA. Denials are an important option for ensuring that discharges
from activities requiring a federal license or permit comply with the CWA. Some certifying authorities try
to engage with project proponents early in the project development stages to better communicate their
requirements, minimize activity impacts, and reduce the likelihood of certification denial (ACWA, 2019).
For example, the Colorado Department of Public Health and Environment engages in pre-filing process
with project proponents for large, complex projects to streamline the review process and minimize
requests for additional information (Western States Water Council, 2014).
4.1.3.2	On Project proponents
Section 401 certification denials increase costs to project proponents in several ways. First, section 401
certification denials can delay proposed projects, which may increase total costs above the original cost
estimates. Second, a denial may cause the project proponent to forgo the project after having invested
funds and staff time into project development, environmental assessment, and mitigation planning.
Project proponents can challenge a section 401 certification denial in court (incurring legal costs), but if
the courts do not rule in their favor, they will need to invest additional resources to revise plans
accordingly and submit a revised request to receive section 401 certification. Working closely with the
certifying authority during the project development stages and providing all materials that the certifying
authority requires to make a section 401 certification determination may help project proponents avoid
denials and associated costs.
In addition to direct impacts on project proponents, recent section 401 certification denials on large
infrastructure projects, such as natural gas pipelines and export terminals, highlighted the potential for
section 401 certification denials to have broader economic impacts. While data to quantify these effects
are limited, studies have noted that recurring section 401 certification denials of FERC-approved natural
gas pipelines affects transportation of natural gas and could jeopardize the reliability of gas-fired electric
generators (Weilerand Stanford, 2018).
4.2 Section 401 Certification Interpretations
Court decisions related to section 401 certification issuance have generated interpretations of CWA
section 401 provisions, including clarifications regarding the timeline for review, the types of discharges
subject to section 401 certification, the scope of federal agency authority, and how withdrawals and
resubmittals of the same requests affect the one-year time limit for certifying authorities to exercise their
section 401 certification authority. See section II.F.4 of the proposed rule preamble for detailed discussion
of the relevant court decision on section 401.
5 Possible Effects of Proposed Section 401 Certification
Regulations
Executive Order 13868 on Promoting Energy Infrastructure and Energy Growth directs the EPA to review
and revise section 401 guidance to states, authorized tribes and federal agencies, and to publish a
proposed rule to revise the EPA's existing certification regulations. On June 7, 2019, the EPA issued the
revised guidance for states, authorized tribes, and federal agencies to provide recommendations
concerning the implementation of CWA section 401 (U.S. EPA, 2019a).
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The EPA is proposing the following clarifications, presented here across four categories, to its existing
certification regulations:22
1)	Timeline: The timeline for action on a section 401 certification is proposed to begin upon receipt
of a certification request by the certifying authority. Review timeline is reinforced as one year.
2)	Scope: The scope of a section 401 certification review, and the decision whether to issue or deny
a section 401 certification, is proposed to be limited to an evaluation of whether the potential
discharge will comply with applicable provisions of sections 301, 302, 303, 306, and 307 of the
Clean Water Act and EPA-approved state or tribal Clean Water Act regulatory program
provisions.
3)	When the EPA is the certifying authority, the EPA is proposing additional procedures for pre-
filing engagement and requests for additional information. Under the proposal, project proponents
would be required to request a pre-filing meeting with the EPA, when it acts as the certifying
authority, at least 30 days prior to submitting a request for certification to help ensure a timely
section 401 certification decision. As proposed, when EPA is the certifying authority, it would be
allowed to request additional data from the project proponent within 30 days of receipt of a
request for certification; the EPA would only request additional information that could be
collected or generated within the established reasonable period of time; and the EPA would
include a deadline for the project proponent response, allowing sufficient time to review the
information and act on the request within the federal agency's timeframe.
This section summarizes how each proposed revision differs from current implementation of CWA
section 401. The section also presents potential impacts of each proposed revision. Table 5-1 summarizes
potential impacts of the proposed revisions on certifying authorities and project proponents.
Table 5-1. Summary of possible impacts of proposed section 401 revisions
Revision
Certifying authorities
Project Proponent
Potential Pros
Potential Cons
Potential Pros
Potential Cons
Timeline
Improved clarity
Potentially less time to collect
Improved clarity
Potentially

of when clock
and generate information to
of when clock
more denials

starts; less
inform decision; may lead to
starts; less


litigation about
more denials or waivers
litigation about


delays/potential

delays/potential


waiver

waiver

Scope
In circumstances
Potential exclusion of conditions
Reduced wait
Additional legal

where the
if conditions extend beyond the
times; fewer
challenges from

proposed scope
proposed scope of certification;
non-water
certifying

is more narrow
potential waiver if reasons for
quality
authorities and

than current
denial extend beyond the
conditions on
environmental

state or tribal
proposed scope
certification
organizations

practices, the




proposal may




translate to




shorter section




401 request




review times



22 40 CFR S 121
15

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Table 5-1. Summary of possible impacts of proposed section 401 revisions
Revision
Certifying authorities
Project Proponent
Potential Pros
Potential Cons
Potential Pros
Potential Cons
Pre-Filing
Pre-filing
Not all EPA regions have the
Pre-filing
Increased labor
Engagement &
meetings result
budget/capacity to support pre-
meetings help
burden and
Additional
in fewer
filing meetings; limitations on
establish data
project
Information
incomplete
additional information request
needs for a
development
Requests
requests;
timeline could result in
timely review;
costs from pre-

additional
insufficient data for decision and
additional
filing meeting;

information
lead to more denials
information
additional

request

procedures limit
fee/burden if

procedures may

the timeline for
initial request

limit extended

requests to
denied due to

back and forth

make process
insufficient data

with project

more efficient


proponents



5.1 Timeline
5.1.1 Proposed Revision
The CWA establishes a time limit of "any reasonable period not to exceed one year" for certifying
authorities to complete their section 401 certification analysis and decision. The EPA's existing
certification regulations23 specify that the licensing or permitting agency determines the "reasonable"
time period within that one-year timeframe, and the proposed section 401 regulations reaffirm this
practice.
The proposed revision clarifies that the timeline for action on a section 401 certification begins upon
receipt of a certification request by the certifying authority. The CWA states that certifying authorities
must act on a request for certification "within a reasonable period of time (which shall not exceed one
year) after receipt of [a certification] request."24 Existing practice indicates that the certifying authority
determines what constitutes a "complete request" that starts the review clock. However, the statute does
not use the "complete application" term.
This proposal clarifies that for a review timeline to start, the project proponent must submit a written
request for certification to the certifying authority that includes the following information:
1.	Identification of the project proponent(s) and an appropriate point of contact;
2.	Identification of the proposed project;
3.	Identification of the applicable license or permit and includes a copy of all application materials
provided to the federal agency;
4.	Identification of any discharge that may result from the proposed project and the location of such
discharge and receiving waterbodies;
5.	A description of the methods and means used or proposed to monitor the discharge and the
equipment or measures employed or planned for the treatment or control of the discharge;
23	40 CFR § 121.16(b)
24	3 3 U.S.C. § 1341(a)(1)
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6.	A list of all other federal, interstate, tribal, state, territorial, or local agency authorizations
required for the proposed project, including all approvals received or denials already made; and
7.	The following statement: 'The project proponent hereby requests that the certifying authority
review and take action on this CWA section 401 certification request within the applicable
reasonable timeframe."
The EPA recommends that state and tribal requirements that go beyond the request requirements detailed
above be revised after the establishment of final EPA regulations to ensure consistency with the EPA's
regulations and those of other states. EPA is soliciting comment on the potential costs of revising these
requirements.
Additional proposed revisions reinforce the existing one year timeline for project review. The proposed
changes reiterate a firm one year review timeline from receipt of a certification request and prohibit a
certifying authority from taking actions for the purpose of extending the timeline beyond one year from
receipt of the section 401 request.
5.1.2 Potential Impacts of Revision
For both certifying authorities and project proponents, this revision would provide clarity regarding the
start of the review clock and reduce litigation about whether certifying authorities waived their section
401 authority by exceeding the section 401 timeframe. Recent New York State natural gas pipeline case
studies (see Sections 4.1.1, 9.2, and 9.3) demonstrate that the "complete application" standard for starting
the clock has caused confusion and delays. In these cases, the certifying authority requested additional
information from the project proponent before deeming the section 401 requests complete and starting its
review. Although the certifying authority issued a decision within a year of deeming the request complete,
FERC ultimately ruled that the certifying authority had waived section 401 authority by exceeding the
one year timeframe. The "upon receipt of certification request" standard would reduce confusion about
when the clock starts, reduce the number of inadvertent waivers and reduce delays.
Extended delay while waiting for a certification decision is an opportunity cost to the project proponent.
Any sidelined investment funds awaiting a permit decision could have been invested elsewhere. The
sooner the project proponent knows of a denial the sooner alternative investments can be considered
which could generate benefits. Similarly, faster granting of certification would allow proposed projects to
begin generating benefits sooner.
Legal risk and associated costs could also be minimized under the current proposed regulation. By
providing more transparency and better defining milestones and responsibilities, both project proponents
and other entities are less subject to the legal risk inherent in poorly defined approval processes.
Establishing that the review clock starts upon receipt of a request could lead to certifying authorities
having less information available to make a section 401 certification decision if initial certification
requests are incomplete. If the data gaps are significant, certifying authorities may respond by issuing
more denials. Based on recent survey results (ACWA, 2019), incomplete requests are the most common
cause of section 401 review delay. The list of information and materials required in a certification request
could help ensure that certifying authorities receive all information necessary to make a section 401
certification decision in the initial certification request.
The EPA expects that the proposed request requirement clarifications will, in cases where certifying
authority requirements go beyond these proposed requirements, reduce the burden placed on project
proponents and certifying agencies involved in the section 401 certification process. Clear and transparent
requirements allow all entities to make decisions with symmetrical information which should lead to
reduced ambiguity, confusion, and delay.
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The proposed revisions prohibiting actions by the certifying authorities to extend the clock is an attempt
to deter the "withdrawal and resubmit" process which allowed for a project timeline to be informally
extended beyond one year. By specifically addressing the mechanism whereby section 401 certifications
were allowed to be informally extended, the EPA expects that requests for certification will be acted upon
within the one year statutory timeline, allowing for a more streamlined and transparent process. If a
certifying authority approaches the end of the one-year timeline and is unable to certify a section 401
request, two options remain available: denial or waiver. The CWA does not prevent a project proponent
from reapplying for a section 401 certification once the original request is denied, and the proposal
reaffirms the ability for a project proponent to submit a new certification request. In the case of a denial,
the project proponent can submit a new request for certification that addresses the water quality issues
identified in the denial in addition to the other request requirements.
5.2 Scope
5.2.1 Proposed Revision
The CWA section 401 certification process allows the certifying authority to protect water quality of
federally regulated waters from adverse effects caused by discharges from federally licensed or permitted
activities by determining whether the discharges comply with sections 301, 302, 303, 306, and 307 of the
CWA.25 Section 401 regularly references requirements to ensure compliance with "applicable effluent
limitations" and "water quality requirements," prompting the EPA to propose that the scope of a section
401 certification review, and the decision whether to issue or deny a section 401 certification, be focused
on water quality impacts from point source discharges to navigable waters. Specifically, the EPA
proposes to define the scope of certification as follows: "The scope of a section 401 certification is
limited to assuring that a discharge from a federally-licensed or permitted activity will comply with water
quality requirements." See preamble section III.D for a full analysis of the proposed scope of certification.
Under the proposal, any condition added to a section 401 certification that is not within the proposed
scope of certification may not be included in the federal license or permit, and the condition does not
become federally enforceable. If a certifying authority denies section 401 certification for reasons outside
of the scope of certification (i.e., fails to meet the requirements of section 401), the EPA is proposing that
the federal agency will treat the action in a similar manner as a waiver (U.S. EPA, 2019a). For both
certifications with conditions and denials, the EPA is proposing that if a federal agency receives the
certification decision prior to the end of the reasonable time period and determines they are not consistent
with section 401, the federal agency may provide the certifying authority an opportunity to remedy any
deficiencies within the remaining time period.
Additional proposed changes clarify what information must be present for a valid condition under a
section 401 certification. Such information includes:
1.	A statement explaining why the condition is necessary to assure that the discharge from the
proposed project will comply with the applicable water quality requirements;
2.	A citation to federal, state, or tribal law that authorizes the condition; and
3.	A statement of whether and to what extent a less stringent condition could satisfy applicable
water quality requirements.
While these proposed requirements could produce an additional marginal administrative burden specific
to this rulemaking, such a burden is not likely to be substantive. Certifying authorities are likely already
consulting their respective water quality criteria and applicable requirements during their section 401
25 3 3 U.S.C. § 1341(a)(1)
18

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review. The proposed changes would require disclosure of the basis for conditions to the project
proponent, federal agency, and the public.
5.2.2 Potential Impacts of Revision
For states and tribes that currently review, condition or deny certifications on the basis of non-water
quality impacts, the proposed scope could reduce the time that certifying authorities spend reviewing
certification requests, potentially reducing labor costs. In these circumstances, reduced review times could
translate into reduced wait times for project proponents. The water quality requirements limitation could
also reduce the number of non-water quality related conditions required by the certifying authority,
potentially reducing compliance costs for project proponents. For the majority of states and tribes that
implement the section 401 certification program consistent with the CWA, these proposed revisions will
have no impact.
However, limitations on the scope of section 401 review could reduce the authority of certifying
authorities to protect against project impacts that could indirectly affect water quality and cause
environmental and public health impacts, such as air pollution impacts on water resources through
precipitation. Certifying authorities may respond by issuing more denials. Additionally, the water quality
impacts limitation could lead to additional legal challenges from certifying authorities and environmental
organizations, which could delay proposed actions and activities.
5.3 Pre-Filing Engagement and Additional Information
5.3.1 Proposed Revision
Pre-Filing Engagement: In its pre-proposal submittal to the docket,26 ACWA indicated that incomplete
requests are the most common cause of section 401 review delay (ACWA, 2019). In pre-proposal docket
submissions, outreach, and correspondence project proponents suggested the lack of clear state processes
and prolonged information requests contributed significantly to the delay in the 401 certification process.
The Agency has also been made aware of relatively low staffing availability in many state certification
programs.
In an effort to promote more complete requests, states have taken steps to inform project proponents
about the information required to make a section 401 certification determination. Twenty-one states have
used one of the following options to ensure completeness: (1) explain what constitutes a complete request
in state regulations, (2) accept the federal Army Corps of Engineers request in lieu of a separate section
401 request form (for section 404/10 permits), or (3) list information requirements on the section 401
request form. Many states also work with project proponents through early engagement to ensure
awareness of request requirements (ACWA, 2019).
The proposed revisions would make pre-request consultations more readily available when the EPA is the
certifying authority. Under the proposal, thirty days prior to filing a request for certification, project
proponents must submit a request for a meeting with the EPA. The proposed regulation would give the
EPA the option to meet with project proponents before receiving a certification request to learn more
information about a proposed project. The EPA would also have the option to deny the meeting request if
the parameters and impacts of the project are sufficiently clear.
Additional Information: When certifying authorities need more information to make a section 401
certification determination, they ask project proponents to submit additional data. Under the proposed
revisions, when the EPA acts as the certifying authority, it would need to issue the request for additional
information within 30 days of receipt of a request for certification, and the request could only cover
26 Docket No. EPA-HQ-OW-2018-0855
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information that can be collected or generated within the established reasonable period of time (i.e., no
National Environmental Policy Act review findings unless the request is submitted at or near the
conclusion of the NEPA process). Under the proposed revisions, the EPA would include a deadline for
the project proponent response, allowing sufficient time to review the additional information and act on
the request within the agency's section 401 review timeframe.
5.3.2 Potential Impacts of Revision
Pre-filing Engagement: Many states have already implemented pre-filing meetings, indicating states
believe the meetings are beneficial for improving communication of data needs and reducing the number
of incomplete certification requests. These efforts could similarly benefit the EPA when it acts as the
certifying authority by increasing the likelihood of receiving all necessary information in the initial
request and by reducing the need to contact project proponents for additional information. Pre-filing
meetings also benefit project proponents by helping them understand the data required for a timely
section 401 review.
However, certifying authorities currently engage in these efforts on an inconsistent basis. The proposed
revisions would require project proponents to submit written pre-filing meeting requests to the EPA,
which could place a burden on project proponents, especially those already familiar with section 401
certification request requirements. The pre-filing meeting could also place a burden on the EPA regions,
particularly those with limited staff and resources. To minimize this burden, the EPA could decline
meeting requests for routine or non-complex projects and only accept the meeting for larger or complex
projects where uncertainty exists.
Although the pre-filing meetings can place additional burden on both project proponents and the EPA, the
process could save burden elsewhere in the section 401 certification process. The existing "withdrawal
and resubmit" process highlights "unofficial" engagement currently occurring for larger and more
complex projects. The pre-filing meeting would make this back and forth communication between the
project proponent and the EPA more formal and shifts its occurrence to earlier in the process, which could
help project proponents better accommodate concerns in the original planning stages and reduce
confusion later in the process.
Additional Information: Limiting additional information requests to within 30 days of receiving the
section 401 request would make the section 401 certification process more efficient. The 30-day
limitation would also condense the time that the EPA and project proponents spend communicating about
the status of the certification request. Since the EPA would need the additional materials to make a permit
decision, they are more likely to receive the information they need to make a decision in a timely manner.
Project proponents would have great incentive to provide all requested materials prior to the end of the
reasonable period to minimize the risk of a denial. The EPA would have the remainder of the reasonable
period of time to receive and review the additional materials to inform the Agency's decision.
The 30-day limitation could prevent the EPA from obtaining enough information to make an informed
decision, particularly if project proponents do not submit additional information before the deadline,
which could lead to more denials. The requirement to submit a request for additional information within
30 days of receipt of a certification request could be problematic for EPA regions with limited resources,
particularly when the proposed project is complex. The 30-day limitation could result in rushed requests
that do not address all data gaps, ultimately resulting in more denials when the EPA does not have
sufficient information to make a section 401 certification determination. Project proponents may face
additional costs from the proposed 30-day limitation if their initial section 401 certification request is
denied due to insufficient information. They could incur labor burden costs to draft a second section 401
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certification request and may need to pay an additional fee upon resubmittal, depending on the certifying
authority's fee structure.
However, the EPA will learn about proposed projects at least 30 days prior to receiving section 401
requests through the proposed pre-filing meeting request. Since the EPA can begin to consider potential
information needs after receiving pre-filing meeting requests, it has 60 days total (30 days prior to request
receipt and 30 days after request receipt) to consider proposed projects and assess information needs. The
combined timeframe of these two proposed revisions will reduce the possibility of rushed additional
information requests and subsequent denials.
5.4 Effects on Partner Federal Agencies, States, and Tribes
Federal agencies play an important role in facilitating information collection, sharing that information
amongst involved parties and clearly communicating project milestones and deadlines during the section
401 certification process. The changes proposed in this rulemaking highlight how federal agencies are
uniquely poised to promote pre-request coordination to harmonize project planning activities, including
data needs and timelines. These proposed changes do not explicitly require any federal agencies to change
their existing regulations to reflect these updated requirements; however, the EO directs federal agencies
to update their regulations to ensure consistency with the EPA's final updated regulations. This proposal
highlights the need for clear communication between entities and outlines opportunities for federal
agencies to facilitate this communication. While this proposal encourages federal agencies to work
closely with certifying authorities and project proponents, formalization of this process via an agency
rulemaking may not be required. The EPA requests comment on whether these proposed changes would
necessitate any subsequent additional federal rulemakings from implementing agencies.
Similarly, states and tribes may decide to modify their existing regulations to comply with changes
proposed in this EPA rulemaking. Subsequent rulemakings promulgated by other federal agencies (i.e.
Corps, FERC, etc.) could further increase the need for additional state and tribal updates. The incremental
labor hours required for rulemaking efforts are likely specific to each state and authorized tribe and will
depend on existing requirements, the level of public interest, and administrative procedures.
6 Possible Effects on Case Studies
This section discusses how the proposed changes could have impacted the denial case studies presented in
Section 4.1.
6.1 New York Natural Gas Pipelines
Table 6-1 summarizes how the proposed changes could have impacted recent denial cases for natural gas
pipelines in New York State.
Table 6-1: Possible impacts of the proposed section 401 revisions on recent New York State pipeline denials
Proposed Revision
Constitution Pipeline
Valley Lateral Pipeline
Northern Access Pipeline
Timeline
Project proponent filed
section 401 request on
August 22, 2013. Under
revision, a decision would
have been required by
August 2014 (actually
issued April 2016).
Project proponent filed
section 401 request on
November 13, 2015. Under
revision, a decision would
have been required by
November 2016 (actually
issued August 2017).
Project proponent filed
section 401 request in
February 2016. Under
revision, a decision would
have been required by
February 2017 (actually
issued April 2017).
Scope
NYSDEC denied section
401 certification for
failing to demonstrate
NYSDEC denied section 401
certification because FERC's
environmental review of the
NYSDEC denied section
401 certification for failing
to demonstrate
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Table 6-1: Possible impacts of the proposed section 401 revisions on recent New York State pipeline denials
Proposed Revision
Constitution Pipeline
Valley Lateral Pipeline
Northern Access Pipeline

compliance with NYS
WQS, so the proposed
scope limitation would
not have impacted this
case.
project failed to consider
downstream greenhouse gas
emissions from the electric
generator shipper. Since this
reason is not related to water
quality, FERC may have
treated this denial as a waiver
under the proposed scope
limitation.
compliance with state
WQS, so the proposed
scope limitation would not
have impacted this case.
Overall, the proposed revisions that could have resulted in the biggest outcome changes for the New York
pipeline cases are the proposed timeline changes. The review timeline revision would have necessitated a
section 401 certification decision within one year of receiving the request for certification. Instead, a
decision took three years in the Constitution case, nearly two years in the Valley Lateral case, and 14
months in the Northern Access case.
NYSDEC may have still denied section 401 certification for these cases under the proposed revisions.
Under the proposed timeline revisions, NYSDEC may not have received enough information to make a
section 401 certification determination, or the information they received may have led to the same
conclusion. The process, however, would have been much faster under the proposed revisions. Extended
delays for a certification decision are an opportunity cost to the project proponent. Any sidelined
investment funds awaiting the certification decision could have been invested elsewhere. The sooner the
project proponent knows of a denial the sooner alternative investments can be considered which could
generate benefits. Similarly, granting certification sooner would allow proposed projects to begin
generating benefits sooner. The Valley Lateral pipeline denial is the most likely of the three cases to have
a different result under the proposed revisions. In this case, NYSDEC denied section 401 certification
because of greenhouse gas effects, which does not fall within the proposed scope of certification.
6.2 Millennium Bulk Terminals in Washington State
Millennium first submitted a 404 permit request to the Corps and a section 401 request to the Washington
Department of Ecology in February 2012 via a Joint Aquatic Resources Permit Application (JARPA),
which serves as a joint application for federal, state, and local aquatic resource permits.27 Millennium
withdrew its JARPA in February 2013 at the Corps' request to allow the federal agency more time to
complete its regulatory process,28 with the intention of resubmitting after the environmental review
process (Washington Department of Ecology, 2019). Millennium resubmitted its JARPA in July 2016.
Assuming the project proponent still withdrew its JARPA and resubmitted near the conclusion of the
environmental review process under the proposed revisions, the Washington Department of Ecology
would have needed to issue a section 401 certification determination by July 2017 to comply with the
proposed timeline revision and avoid waiving review. The Washington Department of Ecology actually
issued its decision two months later in September 2017, one year after the Corps issued its EIS. If the
project proponent no longer agreed to withdraw its section 401 certification request and resubmit near the
conclusion of the environmental review process, the Washington Department of Ecology would have
27	Millennium Bulk Terminals Longview, LLC v. Washington State Department of Ecology. Docket 18-2-00994-08.
Petition for Review
28	Millennium Bulk Terminals Longview, LLC v. Washington State Department of Ecology. Docket 18-2-00994-08.
Petition for Review
22

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been required to act on the initial request by February 2013, the same month that the project proponent
withdrew the initial request.
The Washington Department of Ecology's certification denial for the project, dated September 2017,
identified several reasons, including that the section 401 certification request did not provide reasonable
assurance that the project would meet state WQS, the project would have unavoidable, adverse impacts to
the local environment, transportation, public health, the local community, and tribal resources, increased
cancer risk from diesel pollution, more traffic congestion and delayed emergency response times,
increased vessel traffic on the Columbia River, and limited tribal fishing access. In this case, the State's
assertion that the certification request did not provide reasonable assurance that the project would meet
WQS would be within the proposed scope of certification.
7 References
Arizona Department of Environmental Quality. (2018, February 21). Why do I need a State Water Quality
Certification, CWA Section 401? Retrieved from Arizona Department of Environmental Quality:
https://azdeq.gov/why-do-i-need-state-water-quality-certification-cwa-section-401
Association of Clean Water Administrators (ACWA). (2019, May). 401 Certification Survey Summary.
Retrieved from: https://www.acwa-us.org/wp-content/uploads/2019/05/ACWA-State-401-Cert-
Survey-Summary .pdf
Association of State Wetland Managers (ASWM). (201 la, July). 401 Certification Program Summary:
Wisconsin. Retrieved from https://www.aswm.org/pdf_lib/401_cert/wisconsin_case_study.pdf
Association of State Wetland Managers (ASWM). (201 lb, July). 401 Certification Program Summary:
Delaware. Retrieved from https://www.aswm.org/pdf_lib/401_cert/delaware_case_study.pdf
Berk Consulting. (2012, April 12). Economic and Fiscal Impacts of Millennium Bulk Terminals
Longview. Seattle, Washington.
California Water Boards. (2018, December 5). Water Quality Certification. Retrieved from California
Water Boards: https://www.waterboards.ca.gov/sanfranciscobay/certs.htm
Cocklin, J. (2019, April 3). New York Cautions FERC on Waiving State's Constitution Pipe Review.
Retrieved from Natural Gas Intelligence: https://www.naturalgasintel.eom/articles/l 17917-new-
york-cautions-ferc-on-waiving-states-constitution-pipe-review
Colorado Environmental Records, (n.d.). State of Colorado Water Quality Certification. Retrieved from:
https: //environmentalrecords .Colorado .gov/HPRMW ebDrawer/RecordV ie w/1213810
Downey, J. (2019, March 4). Duke Energy's stalled Constitution Pipeline wins second hearing from
regulators. Retrieved from Charlotte Business Journal:
https://www.bizjournals.com/charlotte/news/2019/03/04/duke-energy-s-stalled-constitution-
pipeline-wins.html
Fairbanks, K. (2018, Oct 26). Judge dismisses claims against DNR leader in Millennium suit. Retrieved
from The Daily News: https://tdn.com/news/local/judge-dismisses-claims-against-dnr-leader-in-
millennium-suit/article_effdcd76-d2e6-5c44-972e-2e7efl 0ee23c.html
Federal Energy Regulatory Commission (FERC). (2018, August 14). Federal Energy Regulatory
Commission. Retrieved from What FERC Does: https://www.ferc.gov/about/ferc-does.asp
23

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Federal Energy Regulatory Commission (FERC). (2019a). Complete List of Active Hydropower
Licenses. Retrived from: https://www.ferc.gov/industries/hydropower/gen-info/licensing/app-
new.asp
Federal Energy Regulatory Commission (FERC). (2019b). Approved Major Pipeline Projects (2009-
Present). Retrieved from: https://www.ferc.gov/industries/gas/indus-act/pipelines/approved-
projects.asp
Ferguson, B. (2018, Nov 21). Letter to Lieutenant General Todd T. Semonite Re: Millennium Bulk
Terminals-Longview Proposed Coal Export Terminal. Retrieved from
https://ecology.wa.gOv/DOE/files/cf/cf06ca42-e617-4ccb-9edb-41eaf4ecb6cd.pdf
Marcellus Drilling News. (2019, April 5). FERC Overrules NY DEC on Northern Access Pipeline
Rehearing. Retrieved from https://marcellusdrilling.com/2019/04/ferc-overrules-ny-dec-on-
northern-access-pipeline-rehearing/
North Carolina Department of Environmental Quality, (n.d.). General Certifications. Retrieved from
North Carolina Environmental Quality: https://deq.nc.gov/about/divisions/water-resources/water-
quality-permitting/401 -wetlands-buffer-permitting/general
Norton, K. (2019, March 1). Letter from National Tribal Water Council to EPA Re: Early Engagement on
Updating and Improving Implementation of Clean Water Act Section 401.
Sunding, D. (2011). Economic Incentive Effects of EPA's After-The-Fact Veto of a Section 404
Discharge Permit Issued to Arch Coal. The Brattle Group, 1-16.
U.S. Army Corps of Engineers (USACE). (2016, September). Millennium Bulk Terminals—Longview:
Draft NEPA Environmental Impact Statement. Retrieved from:
https://www.millenniumbulkeiswa.gov/assets/01_executive_summary.pdf
U.S. Army Corps of Engineers (USACE). (2017, Jan 19). Army Corps of Engineers Releases 2017
Nationwide Permits. Retrieved from https://www.vnf.com/army-corps-of-engineers-releases-
2017 -nationwide-permits
U.S. Army Corps of Engineers (USACE). (n.d.-a). Obtain a Permit. Retrieved from U.S. Army Corps of
Engineers: https://www.usace.army.mil/Missions/Civil-Works/Regulatory-Program-and-
Permits/Obtain-a-Permit/
U.S. Army Corps of Engineers (USACE). (n.d.-b). Rivers and Harbors Act. Retrieved from US Army
Corps of Engineers, Sacramento District:
https://www.spk.usace.army.mil/Missions/Regulatory/Jurisdiction/Rivers-Harbors-Act/
U.S. Energy Information Administration. (2019, April 19). Nuclear Explained: U.S. Nuclear Industry.
Retrieved from U.S. Energy Information Administration:
https://www.eia.gov/energvexplained/index.php?page=nuclear use
U.S. Environmental Protection Agency (U.S. EPA). (2001, March). EPA Requirements for Quality
Assurance Project Plans. Retrieved from U.S. Environmental Protection Agency:
https://www.epa.gov/sites/production/files/2016-06/documents/r5-final_0.pdf
U.S. Environmental Protection Agency (U.S. EPA). (2013, February 20). Authorization to Discharge
Under the National Pollutant Discharge Elimination System. Retrieved from U.S. Environmental
Protection Agency: https://www3 .epa.gov/regionl/npdes/permits/2013/finalnh000062 lpermit.pdf
24

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U.S. Environmental Protection Agency (U.S. EPA). (2015, July). NPDES Program Authorizations.
Retrieved from U.S. Environmental Protection Agency:
https://www.epa.gov/sites/production/files/2015-10/documents/state_npdes_program_status.pdf
U.S. Environmental Protection Agency (U.S. EPA). (2017, Feb 21). Authorization Status for EPA's
Construction and Industrial Stormwater Programs. Retrieved from
https://www.epa.gov/npdes/authorization-status-epas-construction-and-industrial-stormwater-
programs#undefined
U.S. Environmental Protection Agency (U.S. EPA). (2019a, June 7). Clean Water Act Section 401
Guidance for Federal Agencies, States and Authorized Tribes. Retrieved from U.S.
Environmental Protection Agency: https://www.epa.gov/sites/production/files/2019-
06/documents/cwa_section_40 lgui dance .pdf
U.S. Environmental Protection Agency (U.S. EPA). (2019b, March 27). NPDES State Program
Information. Retrieved from U.S. Environmental Protection Agency:
https://www.epa.gov/npdes/npdes-state-program-information
U.S. Nuclear Regulatory Commission (NRC). (2018, Aug 17). U.S. Commercial Nuclear Power Reactors
- Operating Reactors. Retrieved from: https://www.nrc.gov/reading-rm/doc-collections/datasets/
Washington Department of Ecology. (2019). Millennium Bulk Terminals Longview. Retrieved from
https://ecology.wa.gov/Regulations-Permits/SEPA/Environmental-review/SEPA-at-
Ecology/Millennium
Weiler, S.A. and M.A. Stanford. (2018). New York's Denial of Water Quality Certification for Three
FERC-Authorized Pipelines: Flagrant Fiat or Valid Veto? Energy Law Journal, 503-530.
Western States Water Council. (2014, April). Summary of State Responses: Clean Water Act Section 401
Water Quality Certification Activities.
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8 Appendix A. Tables/Figures for Federal License/Permit
Overview
Figure 8-1. NPDES program authorizations as of July 2015.
\ V
U.S. Territories
I 1 American Samoa
I I Guam
I I Johnston Atoll
I I Midway/Wake Islands
I I Northern Mariana Islands
1 1 Puerto Rico
|^| Virgin Islands
Source: U.S. EPA, 2015
Note: The EPA is currently delegating NPDES authority to Idaho. Idaho is projected to be fully authorized by July
1, 2021.
State NPDES Program Status
I I Fully authorized
I I Fully authorized, including an approved biosolids program
Partially authorized
I I Unauthorized
Toronto
etroit
Figure 8-2. Interstate pipelines in the contiguous United States
Source: Esri, HERE, Garmin, FAO, SO. 1,1. VSGS, U.S. EPA, 2018
26

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Figure 8-3. Locations of nuclear power plants in the United States.
Missouri	rria w \|
Seattle
o
0
Lake Superior
•y
Q,
Lake
Huron
jiiawa l.to nt real
o o
Tofor

r^0'
Denver l' N ' 1H@

STATE S
San Francisco
0
Alii A,
0

0
sR.ii li
OM
rorjo
CP
Detroit
^ \Q©Hadelphia
00ashin':jton
0
ton
0*V
0
Los Angeles
0
0
©
0r
Dallas
0
Housto
0
Monterrey
0
%
°-"0- 0
0
Gulf of
Mexico
^¦lami
0
Source: U.S. Energy Information Administration, U.S. Energy!Mapping System, April 17, 2018
Table 8-1: State websites with public documentation of licenses/permits and section 401 certification
documents
State
Website title
Link
Arkansas
Instream 401
Certification and Short
Term Activity
Authorization
https://www.adea. state, ar.us/water/planning/instream/

California (San
Diego Region)
San Diego Region -
Wetlands and Riparian
Protection
https://www.waterboards.ca.gov/rwacb9/water issues/program
s/401 certification/
California (San
Francisco Bay)
Clean Water Act Section
401 Water Quality
Certification
https://www.waterboards.ca.gov/sanfranciscobav/certs.html

Maine
Hydropower and Dams
https://www.maine.gOv/dep/land/dams-hydro/index.htrnl#state
Mississippi
Recently Issued Permits
and Certifications
https://www.mdea.ms.gov/ensearch/recentlv-issued-permits-
certifi cations/
New Hampshire
Projects Requiring
Individual 401
Certification for Federal
Licenses or Permits
(other than FERC)
https://www.des.nh.gov/organization/divisions/water/wmb/secti
on401/coe ind.htm
27

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Table 8-1: State websites with public documentation of licenses/permits and section 401 certification
documents
State
Website title
Link
North Carolina
Environmental Request
Tracker
https://deq.nc.gov/permits-regulations/permit-
guidance/environmental-request-tracker
Oregon
Section 401 Hydropower
Certification
httos://www. oregon. gov/dea/wa/wcmermits/Pages/Section-401-
Hvdro oower.asox
Texas
401 Certification
Tracking System
httos://www6. tcea.texas.gov/cmDts/index.cfm
Washington
401 Water Quality
Certifications for non-
hydropower permits
httDs://ecologv.wa.gov/Regulations-Permits/Permits-
certifications/401-Water-aualitv-certification/non-hvdroDower-
401-certifi cations
28

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9 Appendix B. New York Natural Gas Pipelines Case Study
Details
9.1 Constitution Pipeline
The Constitution Pipeline, proposed by Constitution Pipeline Company LLC, is an interstate pipeline that
would provide up to 650,000 dekatherms per day of firm transportation service through approximately
124 miles of pipeline extending from Susquehanna County, Pennsylvania to Schoharie County, New
York (Weiler and Stanford, 2018). Since the proposed pipeline would cross 289 surface waterbodies,
Constitution's EIS focused on water issues (Weiler and Stanford, 2018). FERC concluded that the project
would have some adverse environmental impacts, but the proposed plan would reduce these impacts to
less-than-significant levels. On December 2, 2014, FERC granted Constitution certificate authorization to
construct and operate the proposed pipeline, subject to 43 environmental conditions and other
requirements.
9.1.1	Water Quality Certification Denial
Constitution filed a request for a FERC license on June 13, 2019.29 Constitution initially filed a request
with NYSDEC for section 401 certification on August 22, 2013 (Weiler and Stanford, 2018). However,
NYSDEC deemed the request incomplete until FERC issued a draft EIS and asked Constitution to
provide more information about stream crossings, freshwater wetlands, and related permits. Constitution
submitted additional information on November 27, 2013. NYSDEC requested additional time to comply
with section 401's one-year requirement on May 9, 2014, so Constitution withdrew and resubmitted its
request. NYSDEC continued to request additional information, which prompted Constitution to
supplement its request in August, September, November, and December of 2014. NYSDEC considered
the request complete in late December of 2014. In April 2015, NYSDEC again requested more time to
comply with the one-year requirement, prompting Constitution to again withdraw and resubmit its
request. In April 2016, nearly four years after NYSDEC first began working with Constitution on the
proposed pipeline, NYSDEC denied the section 401 certification request, stating that the Constitution
request failed to meaningfully address the significant water resource impacts that could occur from the
project and failed to provide sufficient information to demonstrate compliance with New York State
WQS. Constitution appealed this decision to the Second Circuit, but the court ruled in favor of NYSDEC.
Constitution's subsequent petition for certiorari to the U.S. Supreme Court and its request to FERC for a
declaratory order that NYSDEC had waived its section 401 certification authority by exceeding the
maximum one-year period were also denied (Weiler and Stanford, 2018).
9.1.2	Current Status
On November 5, 2018, FERC granted Constitution a two-year extension until December 2, 2020 to allow
Constitution to obtain the necessary approvals and complete construction of the pipeline.30 A recent D.C.
Court of Appeals Decision, Hoopa Valley Tribe v. Federal Energy Regulatory Commission31 (see Section
II.F.4.b of the preamble), prompted the D.C. Circuit to grant FERC a voluntary remand in February 2019
29	149 FERC 1(61,199
30	Constitution Pipeline Co., LLC, 165 FERC H 61,081 atP 24 (2018)
31	2019 WL 321025 (D.C. Cir. 2019).
29

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to consider whether NYSDEC waived its section 401 authority on the Constitution Pipeline project.32 The
Hoopa Valley decision stated that repeated withdrawals and resubmissions of the same section 401
certification request violated the one-year time limit for section 401 decisions. The court declined to
decide whether withdrawal of a section 401 request and submission of a new request can restart the one-
year period, or how different a request would need to be to restart the clock.33 The Hoopa Valley ruling
opened the possibility that NYSDEC waived its section 401 certification authority by exceeding the one-
year time limit. In February 2019, the U.S. Court of Appeals for the Washington D.C. Circuit granted
FERC's request to remand the pipeline question for a new review following the Hoopa Valley ruling
(Downey, 2019). NYSDEC informed FERC in April 2019 that they would appeal any decision that
waives the state's water quality certification review and stated that courts would likely reverse a finding
of a waiver (Cocklin, 2019).
9.2 Valley Lateral
Millennium Pipeline Company's Valley Lateral pipeline project includes a 7.8-mile extension of an
existing pipeline in Orange County, New York to serve a new gas-powered power plant in Wawayanda,
New York (Weiler and Stanford, 2018). In the Environmental Assessment, Millennium determined that
that the proposed route would cross 12 waterbodies (seven perennial, four intermittent, and one
ephemeral), and impact approximately 1.9 acres of wetlands. Millennium concluded that the primary
impact of the project would be the temporary alteration of wetland vegetation from clearing and
excavation and planned to use horizontal directional drilling and conventional bore construction methods
to minimize clearing. FERC concluded that Millennium's Environmental Construction Standards,
particularly the wetlands minimization and mitigation measures, met or exceeded the FERC's Waterbody
Construction Procedures and that approval of the Valley Lateral Project would not constitute a major
federal action that would significantly affect the quality of the human environment. FERC granted
certificate authorization for Millennium's Valley Lateral project, subject to compliance with 17 multi-part
environmental conditions. One of the conditions was to file documentation that it had received all
authorizations required under federal law, including section 401 certification from New York State
(Weiler and Stanford, 2018).
9.2.1 Water Quality Certification Denial
Millennium filed requests with NYSDEC for section 401 certification and other New York environmental
permits on November 13, 2015, the same date it filed the FERC request (Weiler and Stanford, 2018).
NYSDEC initially deemed the request incomplete pending FERC's completion of the Environmental
Assessment. After FERC issued the Environmental Assessment, NYSDEC still considered the request
incomplete and requested information needed to complete the request in June 2016, including an
assessment of the project's impacts on federal and state endangered species and clarifications about
impacts on water quality and wetlands. Millennium provided additional information in August 2016
(Weiler and Stanford, 2018).
After FERC issued certificate authorization in November 2016, Millennium urged NYSDEC to complete
its review after FERC issued certification authorization in November 2016, but NYSDEC said it would
continue reviewing the request to determine whether the request was complete and had until August 2017
to make a section 401 certification determination (Weiler and Stanford, 2018). In December 2016, more
than a year after filing the section 401 certification request, Millennium petitioned the D.C. Circuit for
32	Unopposed Motion of Respondent Federal Energy Regulatory Commission for Voluntary Remand, D.C. Cir. Case
No. 18-1251 (2019).
33	Hoopa Valley Tribe v. Federal Energy Regulatory Commission, 2019 WL 321025 (D.C. Cir. 2019).
30

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review of the NYSDEC's delay. The D.C. Circuit rejected Millennium's petition, holding that the
pipeline did not have standing to bring the petition because the pipeline was not injured by NYSDEC's
delay since the inaction operated as a section 401 waiver and enabled Millennium to bypass NYSDEC.
Millennium waited a few months after the D.C. Circuit's decision before submitting a request to FERC in
July 2017 to proceed with construction of the Valley Lateral project, arguing that NYSDEC had waived
its right to issue the section 401 certification. In August 2017, NYSDEC denied Millennium's request on
the grounds that FERC's environmental review of the project was inadequate because it failed to consider
downstream greenhouse gas emissions from Millennium's electric generator shipper (Weiler and
Stanford, 2018).
9.2.2 NYSDEC Decision Overturned
In September 2017, FERC issued a declaratory order stating that NYSDEC had waived its section 401
certification authority by waiting more than one year to issue a decision (Weiler and Stanford, 2018).
FERC subsequently issued a Notice to Proceed with Construction. NYSDEC appealed FERC's decision
in the U.S. Court of Appeals, but the court ruled in FERC's favor. In July 2018, with the construction
work of the pipeline completed, FERC authorized Millennium to place the new pipeline facilities into
service (Weiler and Stanford, 2018).
9.3 Northern Access Pipeline
The Northern Access Project, proposed by National Fuel Supply Corporation and Empire Pipeline Inc.,
includes approximately 99 miles of pipeline, one modified and one new compressor station, a new
dehydration facility, and ancillary facilities. The project would expand firm service on National Fuel's
system by 497,000 dekatherms per day and on Empire's system by 350,000 dekatherms per day.34
FERC's Northern Access Environmental Assessment, released in July 2016, found that pipeline
construction would not likely result in significant impacts on groundwater resources since most
construction would involve shallow, temporary, and localized excavation (Weiler and Stanford, 2018).
The Environmental Assessment stated that seven private water wells and no public water wells are
located within 150 feet of the project area. The project area includes 261 waterbodies, and the proposed
pipeline would cross 134 of these. Many of the impacted streams and wetlands in New York State support
several significant animal species, including trout (brown and rainbow) and the Eastern Hellbender,
which is a State-listed species of concern.35 FERC determined that the greatest potential impact from
pipeline construction would result from sediment loading, particularly from the wet open-cut crossing
method, but National Fuel planned to use that method for only one crossing at Buffalo Creek in Erie
County since other methods were not feasible. National Fuel proposed using dry crossing methods at 195
crossings and horizontal directional drilling at five crossings to minimize impacts. National Fuel provided
an Erosion and Sediment Control and Agricultural Mitigation Plan, which incorporated State and Federal
regulatory plans, procedures, and manuals, to mitigate impacts resulting from water crossings. On
February 3, 2017, FERC granted certificate authorization for National Fuel's Northern Access project in
February 2017, conditioned upon compliance with 27 multi-part environmental conditions (Weiler and
Stanford, 2018).
9.3.1 Water Quality Certification Denial
National Fuel filed requests with NYSDEC for section 401 certification and other New York
environmental permits in February 2016 (Weiler and Stanford, 2018). After NYSDEC did not notify
34	164 FERC If 61,084 (2018)
35	NYSDEC (April 7, 2017). National Fuel Denial Letter.
31

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National Fuel about whether the request was complete, National Fuel agreed to suspend interim
procedural deadlines in return for NYSDEC acknowledging that the request was received on March 2,
2016 and issuing a decision within the next year (Weiler and Stanford, 2018). In January 2017, NYSDEC
asked National Fuel to amend the prior agreement so that April 8, 2016 would be the deemed receipt date
instead of March 2, and National Fuel executed the amendment "to preserve its long-standing relationship
with [NYSDEC]."36 Shortly after receiving the amendment, NYSDEC determined that National Fuel's
request was complete. In April 2017, NYSDEC denied National Fuel's section 401 certification request,
stating that the request failed to demonstrate compliance with New York State WQS because the project
did not adequately mitigate impacts to water quality and would jeopardize biological integrity of affected
waterbodies (Weiler and Stanford, 2018). NYSDEC also stated that the project would impede the best
usages of many affected waterbodies by degrading the survival and propagation of balanced, indigenous
populations of shellfish, fish and wildlife that rely upon these waters.37
9.3.2 NYSDEC Decision Overturned
On August 6, 2018, FERC ruled that NYSDEC waived its section 401 certification authority by
exceeding the maximum one-year period allowed to make a section 401 certification determination.38
NYSDEC asked FERC to reconsider the decision. On April 2, 2019, FERC upheld its prior decision that
NYSDEC waived its section 401 review and stated that the recent Hoopa Valley decision (see Section
II.F.4.b of the preamble) reinforced their determination (Marcellus Drilling News, 2019).
36	Comments of National Fuel Gas Supply Corp. and Empire Pipeline, Inc. in Support of Petition for Declaratory
Order of Constitution Pipeline Co. at 10 n. 41, Constitution Pipeline Co., Docket No. CP18-5-000 (Nov. 9, 2017).
37	NYSDEC (April 7, 2017). National Fuel Denial Letter.
38	164 FERC If 61,084 (2018)
32

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