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Implementing Best Management Practices Reduced Bacteria Loading
and Improved Biological Health in the Middle River Watershed
Waterbodies Improved ln 2008'twosegmentsof Middle River (23.15 miles and 2.92
miles) were listed as impaired on Virginia's Clean Water Act
(CWA) Section 303(d) Total Maximum Daily Load (TMDL) Priority List and Report. The segments
were not attaining Virginia's bacteria water quality standards (WQS) for designated recreation
(swimming) use. The 23.15-mile segment was later listed in 2010 for not attaining Virginia's WQS
for aquatic life use. Installing best management practices (BMPs) helped enhance water quality
and biological health in the Middle River by reducing bacteria and sediment transport. These
improvements prompted the two segments of the Middle River to be removed from the impaired
waters list in Virginia's 2016 305(b)/303(d) Water Quality Assessment Integrated Report.
Problem
The Middle River watershed (VAV-B12R) is in Augusta
County, Virginia, it empties into the South Fork of the
Shenandoah River, which is a tributary of the Potomac
River (Figure 1). The Middle River watershed spans
approximately 54,151 acres, with agriculture as the
primary land use (62%), followed by forest (31%) and
urban/developing area (7%) land uses.
The Middle River was sampled for bacteria at station
1BMDL022.09 under the Virginia Department of
Environmental Quality's (DEQ's) ambient monitoring
program. The 2001-2006 assessment of segments
VAV-B12R_MDL01A00 (23.15 miles) and VAV-B12R_
MDL01B10 (2.92 miles) showed that 2 of 10 samples
(20%) exceeded the Escherichia coli bacteria WQS of a
maximum value of 235 colony-forming units (cfu) per
100 milliliters (mL) for more than 10% of total samples.
Based on this, DEQ added both segments to Virginia's
CWA section 303(d) impaired waters list for the 2008
assessment period.
Bioiogical assessments were also conducted for
the 23.15-mile segment under DEQ's probabilistic
monitoring program in 2002, 2003 and 2008. The
biological integrity scores (Virginia Stream Condition
Index [VSCI]) included 58 (in spring and fall 2002),
58 (in spring 2003), 61 (in fail 2003) and 55 (in fall
2008). A VSCI score of 60 is required for WQS attain-
ment. Because It did not meet the WQS, DEQ added
Figure 1. Location of monitoring stations and delisted
segments in Augusta County's Middle River watershed
in western Virginia.
the segment to Virginia's CWA section 303(d) list of
impaired waters for the 2010 assessment period.
DEQ developed a bacteria and benthic TMDL for
Middle River watershed in 2004, which identified key
pollution sources for the bacteria impairments (live-
stock, failing septic systems, pets and wildlife) and for
the benthic impairment (sediment). In 2010, Virginia
Department of Conservation and Recreation (DCR)
developed an implementation plan with input from
federal and state agencies, Headwaters Soil and Water
Conservation District (HWSWCD), and watershed
stakeholders and landowners. The plan quantified
various control measures needed to reduce bacteria
and sediment transport to the Middie River.
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Story Highlights
Federal, state, and local agencies and stakeholders
cooperated to install BMPs. HWSWCD and other agencies
conducted outreach activities to increase environmental
awareness and promote BMP implementation in the water-
shed; these included watershed visits, group contacts,
presentations at stakeholder meetings and flyer mailings,
Data retrieved from DCR's BMP tracking system (for the
period 2006-2014) shows that BMPs installed included
59,922 ilnear feet (11.35 miies) of livestock exclusion
fencing (Figure 2); 22 acres of stream exclusion with grazing
iand management; 1,931 acres planted with cover crop; 901
acres of small grain and mixed cover crop for nutrient and
residue management; and 114 acres of long-term vegeta-
tive cover on crop and pasture lands. The stream fencing
excluded approximately 985 iivestock from water bodies.
Three animai waste control facilities treat 1,069 tons of
iivestock waste in the watershed annually. In addition,
86 acres of woodland and buffer filter area were planted;
33,894 feet of stream exclusion fencing was repaired and
maintained; 48 acres of legume-based cover crop was
planted and five animal waste control/composter facilities
were installed. Nutrient management pians were written
for 79 acres of cropland, and 9 acres were supported for
extension of Conservation Reserve Enhancement Program
(CREP) watering systems.
Results
DEQ collected bacteria samples through its ambient water
quality monitoring program for the 2016 assessment
period. Of 12 samples collected in 2009-2014 at station
1BMDL022.09 (segments VAV-B12R_MDL01A00 and VAV-
B12R_MDL01B10), none (0%) exceeded the E. coh standard
(Figure 3). Another 60 samples from an upstream station
(1BMDL036.08, within the same assessment unit) had only
five exceedances (8.3%) for E. coli. Both datasets show full
support of the designated recreation (swimming) use.
VSCI data used for the 2016 assessment period at station
1BMDL026.58 show improved scores of 64 and 67 (data
were collected in spring 2011 and fall 2012, respectively)
(see Figure 3). VSCI scores at an upstream station
(1BMDL036.08) were also well above the threshold value of
60. Both datasets indicate full support of aquatic life use.
As a result, DEQ removed both segments (26.07 miies
total)—a 23.15-mile segment for bacteria and benthic
Impairments and a 2.92-mile segment for bacteria
Figure 2. Stream livestock exclusion fencing.
Middle River E. coli Bacteria
(Station - 1BMDL022.09)
Middle River Biological Assessment
Virginia Stream Condition Index
(Station - 1BMDL026.58)
30%









10 (20%)








12 (0%)

2008
2016
Assessment Period
2010 2010 2016 2016
(Fall) (Spring) (Spring) (Fall)
Assessment Period
Figure 3. Middle River assessment data.
impairment—from the state's 2016 303(d)/305(b) Water
Quality Assessment Integrated Report.
Partners and Funding
Water quality improvements are due to partnerships
among the HWSWCD, local stakeholders and several
state and federal agencies, including DCR, DEQ, NRCS
and Virginia Cooperative Extension. BMP implementation
projects (2006-2014), administered by the HWSWCD,
were completed with state funds totaling $819,984, which
include contributions to CREP ($254,199), the Virginia
Agricultural Cost-share Program ($565,865), the Virginia
Natural Resources Conservation Fund (VNRCF) and the
Bay Targeted TMDL Program under VNRCF. DCR provided
technical assistance funds to HSWCD of at least $50,000
per year (total $300,000). During this period, Virginia CWA
Section 319(h) Program funds supported a full-time staff
person who provided technical services for the Middle
River TMDL implementation Project (prorated amount
of $25,000 per year from 2009-2013) for an estimated
contribution of $125,000.
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U.S. Environmental Protection Agency
Office of Water
Washington, DC
EPA 841-F-20-001K
June 2020
For additional information contact:
Sara Bottenfield
Virginia Department of Environmental Quality
540-574-7800 • sara.bottenfield@deq.virginia.gov
John Kaylor
Headwaters Soil and Water Conservation District
540-248-0148 • jkaylor@co.augusta.va,us

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