E PA/600/B- 15/XXX
Quantitative Microbial Risk Assessment Tutorial
HSPF Setup, Application, and Calibration of Flows and Microbial
Fate and Transport on an Example Watershed
Keewook Kima
University of Idaho
Idaho National Laboratory
Center for Advanced Energy Studies
Idaho Falls, Idaho
Gene Whelan
Kurt Wolfe
Rajbir Parmar
Michael Galvin
Marirosa Molina
Richard Zepp
U.S. Environmental Protection Agency
Office of Research and Development
National Exposure Research Laboratory
Athens, GA
8/3/17
aCurrently at Busan Development Institute, Busan, South Korea
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Summary
A Quantitative Microbial Risk Assessment (QMRA) infrastructure that automates the manual process of
characterizing transport of pathogens and microorganisms, from the source of release to a point of
exposure, has been developed by loosely configuring a set of modules and process-based models.
Tutorials describe functionality of a QMRA software infrastructure, guide users through software use
and assessment options, and provide step-by-step instructions for implementing a mixed-use,
watershed-based QMRA. The tutorials are applications to portions of watersheds which provide short
descriptions and discussions that allow users to easily move through the QMRA assessment process
without having to implement all of the steps. These include:
• Installation of software for watershed modeling in support of QMRA
• Navigation of software that automates data collection and identifies an 8-digit HUC of interest
• Importation of local data files to identify and modify contamination sources and input
parameters
• Mathematical formulation of the Microbial Source Module (MSM) that determines microbial
loading rates to a watershed
• Implementation of land-applied microbial loadings within a 12-Digit HUC
• Pour-point analysis of land-applied microbial loadings and comparison of simulated and gaging
station results
• NLDAS and NCDC meteorological data
• Point source and land-applied microbial loadings within a 12-digit HUC
• Publication of a microbial density time series as a TXT File
This tutorial combines several shorter tutorials and applies them to a complete watershed basin, from
source to receptor. Prior to implementation, it is recommended that users become familiar with earlier
boutique tutorials since many questions may be answered more concisely by them. This tutorial
demonstrates how to
• Identify locations of flow gage stations in a watershed of interest.
• Download flow and microbial observations from a USGS gaging station and text file, respectfully.
• Export flow and microbial observations.
• Prepare PEST input files for HSPF flow and microbial parameter calibrations.
• Calibrate HSPF flow and microbial parameters with PEST.
• View results of HSPF flow and microbial parameter calibration with PEST.
• Compare observed, uncalibrated, and calibrated results.
The Manitowoc watershed is a 525 mi2 basin that is used to illustrate a complete source-to-receptor
assessment on a full-size watershed. The results published here are for illustrative purposes only and do
NOT represent a final or verified assessment of the Manitowoc watershed.
1
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HSPI Application, ,i i port on ,
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• Compare uncalibrated, calibrated, and observed simulations at the watershed pour point with
BASINS
• Visualize and overlay time series of flow and microbial densities at the watershed pour point
with BASINS
This tutorial implements an assessment on a complete river basin, based on a series of tutorials that had
previously been developed to aid users in implementing QMRA-related software to assess release,
migration, and fate of microbes in a mixed-use watershed setting, as described by Whelan et al. (2017a).
For example, Whelan et al. (2017b) presents a shorter version of the assessment presented here, since it
demonstrates a pour-point analysis of land-applied microbial loadings and a comparison of simulated
and gaging station results by simulating microbial fate and transport using HSPF; it then analyzes and
visualizes results at multiple locations in the watershed using BASINS.
3
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TUTORIAL - TABLE Of CONTENTS
SECTION 1: CHOOSING A WATERSHED AND EXECUTING HSPF FOR FLOW AND MICROBIAL
FATE AND TRANSPORT
• SOFTWARE ACCESS, RETRIEVAL, AND DOWNLOAD
• NAVIGATING THE SDMPB AND IDENTIFYING A WATERSHED OF INTEREST
o Executing the SDMProjectBuilder
o New SDM Project
o Navigation Helper
o Identify, Modify, and Import Local Source-term Data
¦ Identify Local Source-term Data
¦ Modify Local Source-term Data
• BoundaryPointsLL.csv
• FCProdRates.csv
¦ Import Local Source-term Data
o Identify the Pour Point Gaging Station
o Run Project Builder
• LABEL SUBWATERSHED WITH AN IDENTIFICATION NUMBER
• MODIFY MICROBIAL LOADING RATES IN THE HSPF *.UCI FILE
o Identify Microbial Loading Rates in the HSPF *.uci File which need to be Set Equal to
Zero
o Modify Microbial Loading Rates in the HSPF *.uci File by Using a Text Editor
¦ Identify Land-use Types by Subwatershed
¦ Modify Microbial Loading Rates
o Modify Microbial Loading Rates in the HSPF *.uci File by Using the HSPF User Interface
• EXECUTING HSPF
SECTION 2: CALIBRATING FLOW-RELATED PARAMETERS
• DOWNLOADING AND EXPORTING A TIME SERIES OF FLOW OBSERVATIONS
o Register Simulation Results for the Manitowoc River Basin
o Download Discharge Data Associated with Gage Stations in the Manitowoc River Basin
¦ Daily Discharge Time Series for USGS Gaging Stations on the Manitowoc River
Basin
¦ Daily Discharge Time Series for USGS Gaging Station 04085427
o View Observed Data
o Export Flow Data as a Text File for Parameter Calibration
• PREPARING PEST INPUT FILES FOR HSPF FLOW PARAMATER CALIBRATION
o Prepare HSPF for the Flow Calibration Period
o Execute HSPF for the Flow Calibration Period
• CALIBRATING HSPF FLOW PARAMETERS WITH PEST
• VIEWING OUTPUT FILES OF THE FLOW CALIBRATION RESULTS
o View PEST Output Files of Flow Calibration Results with a Text Editor
o View Calibrated Flow Parameter Values with WinHSPF
4
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SECTION 3: VISUALIZING HSPF FLOW CALIBRATION AND SIMULATION RESULTS
• REGISTERING CALIBRATION RESULTS WITH BASINS
• COMPARING HSPF FLOW SIMULATION RESULTS BY PLOTTING MULTIPLE TIME SERIES
o Identify Data Sources Containing Daily Flow
o View for a Daily Time Step
SECTION 4: CALIBRATING MICROBIAL-RELATED PARAMETERS
• PREPARING MICROBIAL OBSERVATION DATA
• PREPARING PEST INPUT FILES FOR HSPF MICROBIAL PARAMETER CALIBRATION
o Create Microbial Folder and Populate with Necessary Files
o Execute Microbial Calibration using PEST
• CALIBRATING HSPF MICROBIAL PARAMETERS WITH PEST
SECTION 5: VISUALIZATING HSPF MICROBIAL CALIBRATION AND SIMULATION RESULTS
• VIEWING OUTPUT FILES OF THE MICROBIAL CALIBRATION RESULTS
o View Microbial Results Using a Text Editor
o View Microbial Results Using WinHSPF
• REGISTERING CALIBRATED SIMULATION RESULTS AND OBSERVATIONS WITH BASINS
o Register Calibrated Microbial Simulation Results
o Register Microbial Observations
• COMPARING HSPF MICROBIAL SIMULATION RESULTS BY PLOTTING MULTIPLE TIME SERIES
DISCLAIMER
REFERENCES
APPENDIX A: USGS Instantaneous Data Archive for Instantaneous Discharge Data using the
BASINS Download Data Tools
APPENDIX B: Flow Calibration: Details of "HSPF_PEST_flow.exe" and "lnput_flow.in"
APPENDIX C: Flow Calibration: Heuristic Relationships between Land Use Types and Various
Calibration Parameters
APPENDIX D: Microbial Calibration: Details of "HSPF_PEST_microbe.exe" and
"lnput_microbe.in"
5
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SECTION 1
CHOOSING A WATERSHED AND
EXECUTING HSPF FOR FLOW AND MICROBIAL FATE AND TRANSPORT
SOFTWARE ACCESS, RETRIEVAL, AND DOWNLOAD
Instructions for accessing, retrieving, and downloading the following software, to install on a host
computer in support of Quantitative Microbial Risk Assessment (QMRA) modeling, are provided by
Whelan et al. (2017c):
• SDMProjectBuilder (including the Microbial Source Module as part of the installation)
• BASINS (including WinHSPF and WinHSPFIt)
• SARA Timeseries Utility
• HSPF_PEST_flow and HSPF_PEST_microbe
• FORTRAN Library
• PEST
WinHSPF3.0
When installed, three shortcut icons appear on the desktop
6
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NAVIGATING THE SDMPB AND IDENTIFYING A WATERSHED OF INTEREST
Executing the SDMProjectBuilder
1. Execute the SDMProjectBuilder (SDMPB) by clicking on the shortcut icon displayed on the
computer screen:
2. If the icon cannot be found on the Desktop, locate the executables on the hard drive (i.e.,
SDMProjectBuilder.exe), which are typically in \SDMPB\bin\, as illustrated below. A detailed, more
comprehensive tutorial describing how to identify an 8-digit HUC is provided in Whelan et al.
(2017d); an abbreviated version follows.
1 .. ~ Computer ~
OS (CO
~
SDMPB ~ bin ~
-
*t | Search
Organize ~ j§] Open
Burn
New folder
m
- a €
.j. Documents
Name
Date modified
Type
Size
Music
LF90.EER
6/12/2015 4:09 PM
EER File
41KB
vS- Pictures
LF90WIOD.DLL
6/12/2015 4:10 PM
Application extens...
88 KB
% Videos
MapWinUtility.dll
6/12/2015 4:10 PM
Application extens...
82 KB
^ MSM.DLL
6/12/2015 4:09 PM
Application extens...
74 KB
V Computer
~j
NewtonsoftJson.DLL
6/12/2015 4:11 PM
Application extens...
484 KB
^ OS (C:)
:: ogr_csharp.DLL
6/12/2015 4:11 PM
Application extens...
66 KB
Apps
=4' osr_csharp.DLL
6/12/2015 4:10 PM
Application extens...
46 KB
b7flb031bf7552738391fcal2c0
~ SDM_Project_Builder_Batch.EXE
6/12/2015 4:10 PM
Application
68 KB
BASINS41
- SDM_Project_Builder_Batch.xml
6/12/2015 4:10 PM
XML Document
6KB
V dell
¦ SDMProjectBuilder.exe
6/12/2015 4:12 PM
Application
77 KB
J Drivers
_
ill SDMProjectBuilder.exe.config
6/12/2015 4:11 PM
XML Configuration-
1KB
I e074ebaeb37f0ef5b0
SDMProjectBuilderPlugin.dll
6/12/2015 4:09 PM
Application extens...
124 KB
i Intel
- SDMProjectBuilderPlugin.xml
6/12/2015 4:10 PM
XML Document
3 KB
J PerfLogs
81 Shapelltil.exe
6/12/2015 4:10 PM
Application
176 KB
j PEST
StatusMonitor.exe
6/12/2015 4:11 PM
Application
39 KB
Program Files
• stdole.dll
6/12/2015 4:12 PM
Application extens...
32 KB
i Program Files (x86)
: SwatObject.dll
6/12/2015 4:10 PM
Application extens...
193 KB
i Python27
-1
us_ppt_ann.dbf
6/12/2015 4:10 PM
DBF File
1,211 KB
, SDMPB
us_tmax_ann.dbf
6/12/2015 4:12 PM
DBF File
1,297 KB
i bin
us_tmin_ann.dbf
6/12/2015 4:11 PM
DBF File
1,232 KB
i etc
WebDownload.dll
6/12/2015 4:10 PM
Application extens...
76 KB
1 SWAT
H WinHspfLt.exe
6/12/2015 4:11 PM
Application
72 KB
TemD
~
fii
i ~
SDMProjectBuilder.exe Date modified: 6/12/2015 4:12 PM
Application Size: 77.0 KB
Date created: 6/12/2015 4:12 PM
7
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3. The User Interface (Ul) of SDMPB appears.
File SDMProjectBuilder Extensions
gjtii ct»c* # Bkgj] a ^ 4* i,
Legend [selection I I Map |
El ^ Map Layers
4. Before beginning the application, it is important to understand the meaning of the tool bar icons.
For additional information, see Whelan et al. (2017d).
SDM Project Builder
File SDMProjectBuilder Extensions
Q Q,
Add A
Layer...
Remove
Layer
€i New SDM Project" to begin identifying a
watershed of interest.
SDM Project Builder^J
File
~ E
CriMPppjpptRnilrjpr 1
4^ New SDM Project
1 '~t> '~e # L«
1 Leger
Ndv neipei
Import Local Data Files
Run Project Builder
Options
_
8
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6. Create a folder where you have administrative rights. Below, a new project file was created as
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\ HSPF-PEST_l.dspx" Click "Save".
File Edit View Tools Help
Organize* Include in library ~ Share with * Burn
7. A map of the Unites States including Alaska, Hawaii, and Puerto Rico should appear.
File SDMProjectBuilder Extensions
:g]®l E <8 * S O % i::*
Legend [ Selection
El Map Layers
8. In the "Legend", layers are sequentially displayed, top to bottom. They can be moved by holding
the left mouse button down and moving it up or down to the desired position. Layers can be turned
on or off by checking ("V") or un~checking the box at the left of the layer's name. The map layers'
definitions are shown below.
9
-------
:
SDM Project Buildi
File SDMProjectBui
a n
Legend Selection
~ iP Map Layers
B
0 States
~
S
0 HUC-S
~ N
~ y
S
0 Counties
~
US States
All 8-digit HUCs
N: not headwater
Y: headwater catchment
US Counties
9. To find a watershed and collect the desired data, identify each 8-digit HUC and its unique ID called
the Hydrologic Unit Code (HUC) Catalog Unit (CU). Assign CU numbers to the HUC-8s:
a. Add 8-digit HUC labels by right-clicking on the "HUC-S" Layer.
DM Project Buildi
File SDMProjectBui
: Q Q :
I-
Selection
Legend
B £P Map Layers
B 0 States
b. Select "Labeling>Label Setup" and double-click left on "CU"; make sure "[CU]" shows in the
"SELECT" box at the bottom of the screen. Click "Apply", then "OK".
10
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File SDMProjectBuilder Extensions
: ES Q $
LO
® ® fei, E3 I?) ^ -t* 1| |
Legend | Selection
~ Map Layers
Map
B S Stales
~
b El 1ST
~ '
r Zoom to Layer
~ E (jll Attribute Table Editor
_ Set Dynamic Visibility Scale
Data *
Labeling
L*i Selection *
•23 Properties
^ Join Excel file Data' Label
mic Visibility Scale
Feature Labeler J
Categories:
TT] x
Expression j^Basic Properties j Advanced Properties j * *
Field Names:
Unique Values
[And 1 fo~] 1 Not i
SELECT * FROM [Attributes] WHERE
21020002
Each symbol group can define a
separate string expression that includes
attribute values. Double click fields to
add it to the expression.
AddIv
c. The following screen should appear. [Note: All HUC-8s should now have associated CU
numbers.]
Ready. X:-7334658.29897 Y: 4664985.83161 HUC-8:1 feature selected X:-7334658.29897 Y: 4664985.83161 HUC-8:1 feature selected
SDM Project Builde
File SDMProjectBuilder Extensions
iQB,i« ® ® B O [I %
Legend Selection Map
B £1? Map Layers
B 0 States
~
B BjHUC-8
~ N
~ y
0 IS Counties
~
i£l J- -I* ~1
11
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10. We are interested in the Manitowoc River Basin in the County of Manitowoc, Wl (see blue box in
figure below), but there are many ways to identify it. For example, we can zoom to the general area
using the "Zoom In" button
H
on the tool bar. Click it, then go to the "Map" screen and identify
the area to zoom in on, as with the blue box in the figure below.
Ready. X: -7148314.61292 Y: 2421097.27886 HUC-8:1 feature selected X: -7148314.61292 Y: 2421097.27886 HUC-8:1 feature selected
SDM Project Builderj
File SDMProjectBuilder Extensions
ibb,; i¦-»>lao1
Legend | Selection |
P Map Layers
B M States
~
a L^l HUC-8
b n
~ y
B 0 Counties
~
11. The result looks like this.
File SDMProjectBuilder Extensions
Legend Selection
S & Map Layers
B M States
~
B ®|HUC-8!
~ N
~ y
B IS Counties
~
> 12 0 *3) SI O # \jt ik HI:£) & *1* Ml,
I Map I
Ready.
X: -9823874.32548 Y: 5326066.2172 HUC-8:0 features selected X: -9823874.32548 Y: 5326066.2172 HUC-8: 0 features selected
We are interested in the HUC with a CLJ of 04030101.
12
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Navigation Helper
12. Use the "Navigation Helper" to collect the first map layers. On the menu bar, select
"SDMProjectBuilder>Nav Helper".
E
Import Local Data Files
Run Project Builder
Options
£j Luir iui'» |
N
Y
13. The following window appears.
Navigation Help
Base Layers
State:
County:
HUC 8:
Layers:
~ NHD+ ~ HUC 12s
Close
Zoom
Zoom
Zoom
Get Data
Show Attributes
13
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14. With the "Navigation Helper", zoom to State, County, or HUC-8. If you do not know the HUC 8
identification number, but you do know the location, type in the "State" and "County" and choose
"Zoom". Our example is for the watershed in Manitowoc County, Wisconsin.
Navigation Helper
Base Layers
State: Wisconsin
County: IWiM*1443!5iH
HUC 8:
Layers:
B NHD+ ~ HUC 12s
Zoom
Get Data
Show .Attributes
Close
15. The following shows
a. a close-up of HUC 04030101 and
File SDMProjectBuilder Extensions
14
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b. a regional view, including HUC 04030101
•egend , Selection
-I ^ Map layers
07070001
0403011
B ® HUC-8
0403011
04070003
04030^04
1060105
04070006
1080300
04030202
040301<
04070007
0406011
04080101
04060200
04030101
040601!
04030201
04060101
1080103
04080202
040805
04080205
07090002
04090001
04050006
04050005
04050007
04050004
04050003
04090004
07090006
04100002
04120200
07120004
r090005
04050001
, 07120007
04040001
X:-9192880.68514 Y: 5510373.62965 No selected layer X; -9192880.68514 Y: 5510373.62965 HUC-8:0 featur
16. From the figure, we see that the HUC-8 CU identification number is 04030101, which we will need
for collecting data. Type or choose "04030101" for the "HUC 8", check "NHD+" and "HUC-12"
boxes, then click "Zoom" beside "HUC 8".
Navigator! l-Mpf-r
I isi- i
&SM Uty#*
Sit* i7iT??n
Zeam
County: Mantowoc Carty
Zoom
HUC #; EEED
£ NHD- HUC 13?
Liytri
Oose
Zoom
Get
Shtm
15
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17. The following appears, with blue highlighting.
File SDMProjectBuilder Extensions
QQ: i,;iS®8®i#80 ; [f51 # Qi B ^ <1* B ,
Legend Selection
B Map Layers
E El States
~
E 0 HUC-8
~ N
~ y
B ® Counties
~
Map
TT
<
r
04030204
I /
A /
jr
04030101
_04030203
04030201
~^T
X
. 07090002
f
c
X
Iv
i.
07i
,090001
04060200
Jr
k 0406010
Ready. X: -9690294.62222 Y: 5626620.54953 HUC-8:1 feature selected X: -9690294.62222 Y: 5626620.54953 HUC-8:1 feature selected
18. In the Navigation Helper window, click "Get Data" beside "HUC 8".
Navigation Helper
Base Layers
Layers:
iV NHDh
N/J HUC 12s
Oose
~
Zoom
Manitowoc County
W
Zoom
w
Zoom
Get Data
Show /Wnbutes
16
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19. A screen like the following appears.
* -MUUUtti) * Miwonw »c-04anwi o r«r^ * swiv*i«n v u*6o»n«i <*<>—**« <0.0*3 met oi^n^w
Hi IM
tM |
a a ffi] , *cr 0*»X*C
* / WX-K'I
II K*ct]l»0«0)OW
IB
~r
» V, MUC-I
~ «
~ *
a i!c
20. Click "Close".
Navigation Helper
E)
Base Layers
State:
County: Manitowoc Court1/
HUC 8:
Layers:
D4DSD1D1
NHD+ |V] HUC 12s
Qose
Zoom
Zoom
Zoom
Get Data
Show Attributes
17
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21. Colors associated with map layers can be modified for clarity: for example, turn on "nhdflowline
for 04030101", "hue 12 for 04030101" and "HUC-8", with other layers turned off.
File SDMProjectBuilder Extensio
Legend j Selection
E ^ Map Layers
El Li nhdwaterbody for 04030101
El 0 nhdflowline for 04030101
El 0 hue 12 for 04030101
~
El ~ States
~
B D catchment for 04030101
~
B HI [HUC-8
~ N
eh y
B ~ Counties
~
22. To adjust width and color of flowline associated with "nhdflowline for 04030101", double-click left
on the symbol below "nhdflowline for 04030101".
File SDMProjectBuilder Extensic
: c~7i pvn : a • r
-------
23. The "Line Symbol" window appears. Modify the color by left-clicking on the rounded rectangle to
open the "Color" window.
Stroke Type nple
Simple Line
o
Width 3
Dash Slyh Sohd
Opacity
Opacity |
OK Cances ] CAoptv
24. A color palette will appear. Select blue and click "OK".
Color
Basic colors:
r
r r
¦
r
r r
z
m
¦ ¦
Custom colors:
Or
r r
Define Custom Colors »
OK
Cancel
19
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25. Make sure the color of the rounded rectangle changed to blue, like the screen below. Change
"Width" to "1" in the "Line Symbol" window. Click "Apply", then "OK".
IQB
i I * .1
Line Symbol
W\ Smoothing
Stroke Type: nple
Simple Line
Color:
Opacity:
Opacity j
Width:
o
Dash Style Solid
OK | | Cancel 1 [ Apptv I
26. Now there is a better view of the watershed.
,939.61822 Y: 5381356.29014 nhdwaterbody for 04030101: 0 features selected X:-9641939.61822 Y: 5381356.29014 HUC-8: 0 features selected
B ® huc12for 04030101
~
0 O States
~
B D catchment for 04030101
~
b ®|huc-s
~ N
~ Y
B O Counties
~
File SDMProjectBuilder Extensions
; Li ~ : # u® ¦ ffl,
Legend Selection
B ^ Map Layers
El ILI nhdwaterbody for 04030101
B I?] nhdflowline for 04030101
20
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27. If you see the Projection Mismatch screen (which may appear more than once), choose 'Yes' since
you want to re-project these map layers to match the coordinate system.
Identify, Modify, and Import Local Source-term Data
This section identifies and modifies local data files, and imports local data files to the SDMPB. Local
source-term data are described in Whelan et al. (2017e) which also describes how to edit the files and
register them as map layers in the SDMPB. The user can modify certain source-term parameters and
influence the degree of resolution of the watershed through 12 local-data files that are installed when a
user begins a new project. They are located in the "...\LocalData" folder within the working folder.
Whelan et al. (2017d, 2017f, 2017g) provide additional examples identifying and modifying the local
source-term data example default files. Metadata associated with the parameters contained within each
file, including definitions and units, are summarized in Whelan et al. (2017e). Five of the 12 files denote
locations: point sources (PointSourceLL.csv), animal locations (AnimalLL.csv), septic systems
(SepticsLL.csv), boundary conditions (BoundaryPointsLL.csv), and locations for output results
(OutputPointsLL.csv).
21
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Modifications are made to the following local data files:
• BoundaryPointsLL.csv - Identifies boundary condition locations. The boundary point location
(44.027308, -88.164316) was changed to (0.0, 0.0), outside of the watershed and will not
impact the assessment. Although no boundary condition is consumed for this example and
this modification is unnecessary, it illustrates how one can modify this CSV file.
• FCProdRates.csv - Identifies 1) production or shedding rate of microbes from each domestic
animal, which equals the multiple of the (a) domestic animal shedding rate in mass of waste
(wet weight) per time and (b) microbial concentration based on mass of waste shed by the
domestic animal; and 2) identifies typical microbial production or shedding rate per wildlife
per unit area. The shedding rate of "BeefCow" was changed to the value for "DairyCow"
because half of dairy cows are grazed.
The following local data files will not be changed for this example:
• AnimalLL.csv - Identifies domestic animal locations by Latitude and Longitude and domestic
animals by numbers and by type.
• GrazingDays.csv - Identifies the 1) number of grazing days per domestic animal per month
and 2) fraction of the number of grazing days that Beef Cattle spend in a stream per month.
• ManureApplication.csv - Identifies the 1) fraction of manure applied to soil each month per
domestic animal and 2) fraction of amount of manure shed by the domestic animal
incorporated into soil.
• MonthlyFirstOrderDieOffRateConstants.csv - Defines monthly microbial first-order die-off
rate constants.
• OutputPointsLL.csv - Identifies intermediate points, where the user would like the watershed
model to produce simulation results, and only exist at subwatershed boundaries; therefore,
these locations impact delineation of the watershed, in particular the number and location of
subwatersheds.
• PointSourceLL.csv - Identifies point source locations.
• PointSourceData.csv - Identifies the annual-average flow, and microbial and/or chemical
loading rates for each point source.
• SepticsDataWatershed.csv - Identifies the number of people per septic unit, average fraction
of septic systems that fail, average septic overcharge rate per person, typical microbial
density of septic overcharge reaching the stream.
• SepticsLL.csv - Identifies septic system locations by Latitude and Longitude.
• WildlifeDensities.csv - Identifies typical number of wildlife per unit area by land use type.
22
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Identify Local Source-term Data
28. The 12 default files are located in the "LocalData" directory, as illustrated below
("C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\LocalData").
BL^
~ Computer ~ OSDislc(O) ~ Users ~ gwhelan ~ ienr
File Edit View Tools Help
Organize
» Include in library * Share with ~ Burn N
SDMPB
bin
etc
. HSPF-PEST
HSPF-PEST_1
EPAWaters
. HSPF
HSPF-PEST
hucl2
LocalData
met
NHDPIus
NLCD
NWIS
pes
28 items
28 items
Modify Local Source-term Data
Modifications are made to the following local data files: BoundaryPointsLL.csv and FCProdRates.csv.
BoundarvPointsLL.csv
29. Open BoundaryPointsLL.csv using Notepad, Notepad, WordPad, Excel, or other pertinent editor.
Using Notepad, the Latitude and Longitude of the default boundary point locations are as follows:
1 BoundaryPointsLLCSV - Note.J.C
i-w«
File Edit Format View Help
Lati tude,Longi tude
44.027308,-88.164316
jtk
<
~
Ln 1, Co
23
-------
30. Change the Latitude and Longitude to <0.0, 0.0>. Save the file and exit.
BoundaryPointsLL.CSV - Note...
File Edit Format View Help
|_ati tude, Longi tude
0.0,0.0
'WFM
Ln 1, Co
FCProdRates.csv
31. Open FCProdRates.csv using TextPad, Notepad, WordPad, Excel, or other pertinent editor. Using
Notepad, the original file includes the production or shedding rate of microbes from each domestic
animal, wildlife, or land use.
^FCProdRaie;.
File Edit Format View Help
Sou rce, Val ue,Uni ts
DairyCow,2. 50E+10,CountPerAnimalPerDay
BeefCow,3.30E+10,CountPerAnimalPerDay
Swi ne,1.10E+10,CountPerAni malPerDay
Sheep,1.20E+10,CountPerAni malPerDay
Horse,4.20E+08,CountPerAnimalPerDay
Poultry,l.31E+08,CountPerAnimalPerDay
Duck,2.40E+09,CountPerAni malPerDay
Goose,8.00E+08,CountPerAnimalPerDay
Deer,3.50E+08,CountPerAnimalPerDay
Beaver,2.50E+08,CountPerAni malPerDay
Raccoon,1.25E+08,CountPerAnimalPerDay
OtherAgAnimal,0.00E+00,CountPerAnimalPerDay
OtherWildlife,0.00E+00,CountPerAnimalPerDay
Road,2.00E+05.CountPerAcrePerDay
Commercial,6.21E+06.CountPerAcrePerDay
Si ngleFamilyLowDensity,1.03E+07,CountPerAcrePerDay
Si ngleFamilyHi ghDensity.l.66E+07,CountPerAcrePerDay
Mul ti familyResi denti al,2.33E+07,CountPerAcrePerDay
< i
Ln 1, Col 1
32. Change the shedding rate for "BeefCow" to 2.50E+10. Save the file and exit.
File Edit Format View Help
|sou rce,Value,uni ts
Dai ryCow,2.50E+10,CountPerAnimalPerDay
BeefCowi2j50E+l(^ CountPerAnimalPerDay
Swi ne,1 10E+10.CountPerAnimalPerDay
Sheep,1.20E+10,CountPerAnimalPerDay
Horse,4.20E+08,CountPerAnimalPerDay
Poultry,1.31E+08,Cou ntPerAnimalPerDay
Duck,2.40E+09,CountPerAni malPerDay
Goose,8.00E+08,CountPerAnimalPerDay
Deer,3.50E+08,CountPerAnimalPerDay
Beaver,2.50E+08,CountPerAni malPerDay
Raccoon,1.25E+08,CountPerAnimalPerDay
OtherAgAni mal,0.00E+00,CountPerAnimalPerDay
OtherWi1dlife,0.00E+00.CountPerAni malPerDay
Road,2.00E+05,CountPerAcrePerDay
Commercial,6.21E+06,CountPerAcrePerDay
SingleFamilyLowDensity,1.03E+07,CountPerAcrePerDay
Si ngleFamilyHi ghDensity.l.66E+07,CountPerAcrePerDay
Multi familyResi denti al,2.33E+07,CountPerAcrePerDay
Ln 1, Col 1
24
-------
Import Local Source-term Data
Ensure that the old files have been replaced with the new files in the "...\LocalData" working folder.
All files in the "LocalData" folder, which is within the working folder, are used, where appropriate,
even if the files are not registered as map layers on the SDMPB screen.
33. To register source locations in the folder
"C:\Users\gwhelan\iemTechnologies\5DMPB\HSPF-PEST_l\LocalData" as Map Layers, select
"SDMProjectBuilder>lmport Local Data Files".
Lege
SDMProjectBuilder Extensions
New SDM Project
I lnl|—
Import Local Data Files'^
un PIUjiLl Du.lUUr
Options
En3~rTTTnnowTnTErroTTjro3(JTUT"
B 0 huc12for 04030101
~
4> '• <
S& ^
Map
34. The "Edit Local Data" window appears. Select "AnimaILL" in "Local Data Files" section, and click
"Open File".
Local Data Files
AnimaILL
B
BoundaryPointsLL
m
OutputPointsLL
H
PointSourceLL
SepticsLL
Open File
Edit File
Start Adding Points
Delete Selected Point(s) on Map
Close
Close File
25
-------
35. The "Edit Local Data" window will change, as shown below.
Local Data Files
BoundaryPointsLL
OutputPointsLL
PointSourceLL
SepticsLL
Open File
Edit File
Start Adding Points
Delete Selected Point(s) on Map
Close File
Close
_ a x
36. The "AnimaILL" Map Layer will be added to the SDMPB screen as illustrated below.
File SDMProjectBuilder Extensions
Legend I Selection j
P Map Layers
B 15 [AnimaILL]
B D nhdwaterbody for 04030101
B 0 nhdflowline for 04030101
B @3 huc12 for 04030101
~
B D States
B 0 HUC-8
~ N
~ Y
0 O catchmentfor04030101
~
El 0 Counties
~
M k, ID |l :£l £ 19
Map
Ready. X: -9784546.29823 Y: 5416390.22786 AnimaILL: 1 feature selected X: -9784546.29823 Y: 5416390.22786 AnimaILL 0 features selected
26
-------
37. When the screen changes, click "Close File."
ab1 Edit Local Data i — I ^ ¦rffapl
Local Data Files
H
Boundary Points LL
PI
Output Points LL
a
Point Source LL
SepticsLL
Open File
Edit File I
[ Start Adding Points
Delete Selected Point(s) on Map |
Identify the Pour Point Gaging Station
There are several methods for identifying USGS gaging stations associated with watersheds. As
described by Whelan et al. (2017b), one uses BASINS software to download and identify the USGS
National Water Information System (NWIS) stations. A second approach, described below, goes directly
to the USGS NWIS web site and identifies the location.
38. The Manitowoc River Basin exists within the HUC-8 "04030101", as highlighted below. To compare
monitored and simulated flows and microbial densities, the watershed must be delineated through
the sampling/monitoring location, where the SDMPB allows the user to delineate watersheds at
intermediate locations like gaging stations.
SDM Project Builder^
File SDMProjectBuilder Extensions
BQj
Map
Legend [Selection
S Map Layers
I5t) ^ "l* ^1
S ~ nhdwaterbody for 04030101
B ~ nhdflowline for 04030101
B 0 huc12 for 04030101
~
B ~ States
~
B ~ HUC-8
~ N
0Y
B ~ catchment for 04030101
~
B ~ Counties
~
Re X: -9651825.6456 Y: 5409575.19832 HUC-8:1 feature selected X: -9651825.6456 Y: 5409575.19832 Streamgage Events: 0 features selected
27
-------
g usgs.gov P - Q j ^ USGS Site Map for USGS 04... v]
USGS 04085427 MANITOWOC RIVER AT MANITOWOC, WI
Manitowoc County, Wisconsin
Hydrologic Unit Code 04030101
Latitude 44°06'26", Longitude 87°42,55" NAD83
Drainage area 526 square miles
Gage datum 590.10 feet above NAVD88
Location of the site in Wisconsin
39. The USGS gaging station near the mouth of the watershed, which will represent the pour point in
the watershed delineation, is USGS Manitowoc River at Manitowoc, WI gage station (04085427). To
identify the location, click on
http://waterdata.usgs.gov/nwis/nwismap/7site no=04085427&agencv cd=USGS; the following
USGS webpage appears, with the gaging station highlighted by the red circle.
Questions about sites/data? Data Tips
Feedback on this web site Explanation of terms
40. By zooming in, an approximate location of the gage within the Manitowoc River Basin can be
clearly identified (within the red circle), as illustrated below.
Manitowoc County, Wisconsin
Hydrologic Unit Code 04030101
Latitude 44°06'26", Longitude 87°42'55" NAD83
Drainage area 526 square miles
Gage datum 590.10 feet above NAVD88
Location of the site in Wisconsin
O.S lmi
M
Esri, HERE, DeLorme, METI/NASA, USGS, EPA, USDA
Questions about sites/data?
Feedback on this web site
Data Tips
Explanation of term?
28
-------
41. With this information, the USGS gaging station location can be identified on the SDMPB map layer.
Turn on Flowline ("nhdlfowline for 04030101") to see the shape of the river, and zoom to the area
of interest (see boxed area below).
SDM Project Buildei
File SDMProjectBuilder Extensions
8«®BO
Legend | Selection
0 ^ Map Layers
B ~ nhdwaterbody for D4Q30101
B 0 huc12 for 04030101
~
B ~ States
~
B ~ HUC-8
~ N
~ y
B ~ catchment for 04030101
~
B B Counties
~
'"'fe <
> El is?) £ ,
Map
IX: -9651124.02066 Y: 5387123.20008 HUC-8:1 feature selected X: -9651124.02066 Y: 5387123.20008 Streamgage Events: 0 features selected
42. An approximate location of the gage station can be estimated on the map layer, as illustrated by
the red circle below.
k I Re X: -9752117.7762 V: 5479305.14986 HUC-8:1 feature selected X: -9752117.7762 V: 5479305.14986 Streamgage Events: 0 features selected
File SDMProjectBuilder Extensions
njjMBJLijB]* K9ift o ji %(
Legend | Selection I Map
B 0 Map Layers
B B nhdwaterbody for 04030101
B 0 nhdflowline for 04030101
B M huc12for 04030101
~
B ~ States
~
a ~ HUC-8
~ N
~ y
a — catchment for 04030101
~
a . Counties
~
29
-------
Run Project Builder
43. From the Menu Bar, choose "SDMProjectBuilder", then "Run Project Builder".
File
;B1
Lege
a £?
SDMProjectBuilder Extensions
New SDM Project
Nav Helper
Imnnrt I nral flata Files
Options
a^r'miTTnrrowniTFroruTOSOTOT"
H 0 huc12for 04030101
~
B d States
-i
44. The "Build Frames SDM Project" window appears. Choose "Pour Point" for "Select By". For
"Maximum Upstream", pick a distance that goes at least to the watershed divide - arbitrarily use
1000 km, as the delineation will automatically stop at the watershed divide.
Select Area Of Interest On Map Or Enter Key(s) Below
Select By: 0 HUC-8 © HUC-12 ©Catchment ©County
Press the button below when ready to select a pour point
Current Map Layer © Pour Point 0 Box
Maximum Upstream: km | Select Pour Point On Map |
45. Click "Select Pour Point On Map".
Select Area Of Interest On Map Or Enter Key(s) Below
Select By: HUC-8 HUC-12 ©Catchment C County 0 Current Map Layer (<*' Pour Point ©Box
Press the button below when ready to select a pour point a
Maximum Upstream:
Select Pour Point On Map
30
-------
46. Go back to the map, and zoom in on the gage station location (representing the pour point of the
0
watershed); use the Zoom icon to clearly see the location highlighted with the red cross.
Zoom in because identifying the location is crucial to placing the pointer; if this location is
incorrectly identified, you may include more area than is needed for the assessment by
inadvertently getting too close to the HUC-12 boundary. On the map, move the cursor to the
location of the USGSgage station, and click (see red cross below).
SDM Project Builde
File SDMProjectBuilder Extensions
hi m j 41 iiMI* aesio
Legend | Selection |
B ^ Map Layers
B ~ nhdwaterbody for 04030101
B 121 nhdflowline for 04030101
B US huc12for 04030101
~
B ~ States
~
B D HUC-8
~ N
~ Y
~ O catchmentfor04Q30101
~
~ O Counties
~
IX:-9764495.54674 Y: 5482139,31227 HUC-8:1 feature selected X:-9764495.54674 Y: 5482139.31227 Streamgage Events: 0 features selected .
31
-------
48. When the window disappears, the delineated watershed with the selected pour point is indicated
on the map.
B 0 huc12 for 04030101
~
B ~ States
~
B B HUC-8
~ N
~ y
B B catchmentfor04030101
~
B D Counties
~
B H nhdflowline for 04030101
SDM Project Builder
File SDMProjectBuilder Extensions
oa,i«,;[!]• m ©® iso,
(::i ^ [ik fei 11
Legend Selection
B Map Layers
El H] [EPAWaters Catchment Polyc;
¦
B D Pourpoint Watershed
~
El D nhdwaterbody for 04030101
EPAWaters Catchment Polygons: 0 features selected X: -9720187.00445 Y: 5464147.26158 EPAWaters Catchment Polygons: 0 features selected
d £¦ * 1
49. Click "Next" on the "Build FRAMES SDM Project" interface.
fa Build Frames SDM Projec
X
Select Area Of Interest On Map Or Enter Key(s) Below
Select By: ©HUC-8 © HUC-12 ©Catchment ©County Current Map Layer 9 Pour Point . _' Box
Pourpoint Watershed from NHDPIus
COMID = 12173792
Press the button below to select a different pour point
Maximum Upstream:
Cancel
1000
km Select Pour Point On Map
Next
32
-------
50. Complete the "Build FRAMES SDM Project" as shown, using values included in this figure.
a. To ensure adequate sizes, define the "Minimum Catchment Size" and "Minimum Flowline
Lengths" as "15" and "15", respectively. The Minimum Catchment Size and Minimum
Flowline Length ensure that subwatersheds and stream segment length are not too small.
b. Land areas that are less than 5% of the total have been factored into other Map Layers, as
noted by the "Ignore Landuse Areas Below Fraction" of "0.05".
c. Check "HSPF."
d. The "Degree Day" method is chosen to account for snow accumulation and melt.
e. Select "Microbes" for the contaminant of concern.
f. Output is "Hourly".
g. Segmentation is "Individual", which allows model segments to be associated with each
subwatershed (not each meteorological station, which can have multiple subwatersheds
assigned to them).
Ufa Build Frames SDM Project!
Parameters For Model Generation
Minimum Catchment Size (square kilometers)
15 Minimum Flowline Length (kilometers)
0.05 Ignore Landuse Areas Below Fraction
2000 Simulation Start Year
2012 Simulation End Year
|V| HSPF Output Interval: Hourly
Snow: Degree Day
@ Microbes
Land-Applied Chemical
Chemical Properties
Segmentation: Individual ~
~ SWAT SWAT 2005 Database [C:\BASINS41\bin\Plugins\SWAT\Databases\SWAT2005.mdb
Report Flow Units @ Linear O Log
Cancel
Previous
Next
33
-------
51. Click "Next" and the following screen appears. Use the choices illustrated in the screen below.
Build Frames SDM Project J
Data Options
Soil
® STATSGO
© SSURGO
Elevation
Delineation
Meteorologic
BASINS
0 NCDC Enter NCDC Token Here
® NLDAS Project Time Zone - UTC minus 6
NHDPIus Elevation
NHDPIus
Save Project As C:\Temp\SDMProject\Manitowoc\Manitowoc.mwprj
[71 Add Layers To Map During Project Creation
~
Cancel
Previous
Build
Use the choices and values:
• Choose "STATSGO" which is less detailed than SSURGO for soil options.
• Choose "NLDAS" under Meteorologic which refers to MET data. NLDAS is the North American
Land Data Assimilation System and contains automatic quality control (QC), uses hourly gauge
station data and modeled precipitation, provides estimates at hourly intervals with a l/8th-
degree resolution, and provides precipitation time series at specified locations (Kim et al., 2014;
Whelan et al., 2017h). This is used in conjunction with NCDC NOAA meteorological data which
supplies information for regional data, such as air temperature. BASINS uses cached NCDC data
up to 2009. For direct access to hourly NCDC data, one would choose "NCDC", but the user must
obtain a Token ID. MET stations are assigned to the nearest subwatersheds (based on centroid).
• Choose the "NHDPIus Elevation" for Elevation and "NHDPIus" for Delineation.
• The name of the file should already be identified, but a different name or location can be selected
by choosing the name of the file (e.g., *.mwprj) and where it is saved. The .mwprj file is a
MapWindow (mw) Project (prj) file directly consumed by BASINS. The program will automatically
identify the working folder structure the user originally created. If a special location and name is
chosen, the user may identify a special folder using "Save Project As".
• To allow data retrieval, check "Add Layers To Map During Project Creation".
• Coordinated Universal Time (UTC) is the world standard for civil time, irrespective of the local
standard time [i.e., Greenwich Mean Time (GTM)]. Update the "Project Time Zone - UTC minus"
to the civil time zone of the study area (i.e., Manitowoc, Wl). This can be obtained from Figure 1
as "-6".
34
-------
ime Zones of the North America [ | UTQ12 | | UTC-9 [^j] UTC-8 UTC-7 UTC-6 | ] UTC-5 | | UTC^t
Figure 1. Coordinated Universal Time (UTC) for North America (For Daylight Savings time, increase one
hour in those areas that adhere.)
[https://en.wikipedia.0rg/wiki/Eastern_Time_Z0ne#/media/File:Timez0neswest.PNG]
52. Click the "Build" button; progress windows like the one below will appear and disappear several
times.
35
-------
53. The message in the window below will appear several times during the process. Click "Yes" each
time.
Projection Mismatch.
Reproject map layer to match the map coordinate system? This will not
affect the source file.
Yes
No
54. When the process is complete, the following screen appears. Click "Open in BASINS".
Finished Building Project
C:\Temp\SDMProject\Manitowoc\Manitowoc.mwprj
Ok
Open Folder Open in BASINS
55. The following map layer appears.
H unnamed ~ X: 579,353.069 Y: 2,371,042.391 Meters Lat: 44.130 Long: -88.729
1:561809
¦ BASINS 4.1 - Manitowoc*]
File W Watershed Delineation Models ,4! Compute H Launch Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
O i i s 4
New Open Save Print Settings
* ra & n t
Add Remove Clear Symbology Categories Query Properties Table
«*, a II' O
Pan | In | Out Extent Selected Previous Next Layer Select Deselect Measure Identify Label Mover New Insert Add Remove Copy Paste Merge Erase Erase beneath
Legend * x *
Layers Toolbox
SB £3 Point Sources and Withdrawals
~ ~ Permit Compliance System
~
30 NLDAS Grid Center
~
30 Output Points
~
B0 Septic
~
B0 Animals ^
~
30 Point Sources ^
~
BED Bacteria
B0 Reach File. V1
BD NAWQA Studv Area Unit Boundarie
Preview Map
36
-------
LABEL SUBWATERSHED WITH AN IDENTIFICATION NUMBER
56. Unclick the Septic and "Animals" map layers on the left side of the screen, which simplifies the
screen.
I BASINS 4.5 - HSPF-PEST* 1
File , Watershed Delineation , I Models «, 1 Compute . J Launch Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
Qj fc * S « La .B Lq m » m m -ft; * o ^
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table Select Deselect Measure Identify Label Mover
J® ;) > iS > (P IS shp j ® • <3D f-Ji (3 s n+ •" >/
In Out Extent Selected Previous Next Layer New Insert Add Remove Copy Paste Merge Erase Erase beneath Move Rotate Resize Move vertex Add vertex Remove vertex Cleanup Undo
Legend
Layers | Toolbox |
ED NLDAS Grid Center ^
~
~ ~ Bacteria
~ ~ Reach File, V1 <$>
~ ~ NAWQA Study Area Unit Boundaries s^>
~
~ ~ Accounting Unit Boundaries ^
~ ~ Cataloging Unit Boundaries ^
~
~ O County Names ^
~ ~ County Boundaries
~
~ ~ EPA Region Boundaries
~
BD State Boundaries s$>
~
SD Major Roads ^
~ O Ecoregions (Level III)
~
~ ~ Land Use Index
~
~ ~ State Soil ^
~
~ 0 Simplified Flowtine
00 Simplified Catchment
1=1
~ ~ Area of Interest
Preview Map
01 unnamed - X: 675,819.449 Y: 2,369,089.711 Meters Lat: 44.041 Long: -87.527
~ ~ ~~~~
~~
37
-------
57. To label subwatersheds with an identification number, so they match the numbering scheme in the
HSPF workflow, double-click on the map layer "Simplified Catchment" (the red arrow in the screen
capture below):
File 1 Watershed Delineation l. ' Models :L Compute . Launch Analysis Layer View Bookmarks Plug-ins Shapefile Editor
.. i * * ¦ « : l« La La m tt» m m » i a n* o
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table Select Deselect Measure Identify
iS o
*
Pan
Legend
*' J-l shp shp j &
Out Extent Selected Previous Next Layer New Insert Add Remove Copy Paste Merge Erase Erase beneath Move Rotate
^ X
Layers Toolbox
~ ~ Reach File, V1
~ ~ NAWQA Study Ar
~
~ ~ Accounting Unit B
BD Cataloging Unit B
~
BD County Names
~ ~ County Boundarie
~
BD EPA Region Bou
~
B D State Bo un d ari es
n
BD Major Roads
B ~ Eco reg i o ns (Level
n
BD LandUselndex
~
BD State Soil
~
B0 Simplified Flowlin
|BE Simplified Catch
n
BD Area of Interest
BD & Other
BD NWISDaily Disch
Preview Map
¥ X
H unnamed - | X 682,836.754 Y: 2,332,781,072 Meters Lat 43.712 Long: -87.480
58. Choose the "Labels" tab, then "Setup":
Layer properties: Simplified Catchment
General Mode Appearance j Categories ]i Labels j1 Charts Visibility
Labels preview
Setup...
~ear
Appearance
[71 Labels visible D1 Frame visible
I™ mite huh
Ok ] | Cancel
38
-------
59. Under "Expression",
• choose "SUBBASIN" under "Fields"
• change the Font size to 20.
• click "Ok"
I—-
Preview
[71 Labels visible
Font size
Transparency
c
0
Expression is correct
Expression Font Frame | Position | ViatMtty | Sytes
Expression
[SUBBASIN]
Fields
Clear
AREAVVTMAP
AREAWTMAT
CUMLENKM
LOCD RAIMA
Boundaiy
Output
SUBBASIN
SUBBASINR
LEN2
LAREA
TAREA
00
New Line
Example
[Area] + "ha" +
[PopulationJ/1000 + "thsnd."
Description
[Area] -the name of field
"ha"-string constant
Apply
Ok
Cancel
60. Choose "middle segment" for the location of the label and click "Ok".
Label generation
Position
(_) First segment
© Last segment
« Middle segment
Longest segment
Orientation realtive to line Parallel
I Label every part of shape
Ok
Cancel
39
-------
61. Click "Ok" again, and the subwatershds (i.e., subbasins) are labeled.
jm
ul BASINS 4.5 - HSPF-PEST-1'J
File Watershed Delineation . 1 Models ^ Compute i 'Launch . 'f Analysis Layer View Bookmarks Plug-ins Shapefile Editor
\m * M m * i ta La Ua I m m • m Ift j * o K7 O
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table Select Deselect Measure Identify
*
Pan
Legend
\£> i-i & ;. iP i shp ~ • • Jvi u
In | Out Extent Selected Previous Next Layer New Insert Add Remove Copy Paste Merge Erase Erase beneath Move Rotate
* X
Layers Toolbox
BQ Reach File, V1
BD NAWQAStudyAr
~
B ~ Accounting Unit B
B ~ Cataloging Unit B
BD County Names
BD County Boundarie
~
BD EPARegion Bou
~
BD State Boundaries
~
BD Major Roads
BD Ecoregions (Level
~
BD Land Use Index
~
BD State Soil
~
B@ Simplified Flowlin
|BB Simplified Catch
o
B ~ Area of Interest
BD Other
BD NWISDaily Disch
Preview Map
I? X
_\J unnamed - X: 683,420.503 Y: 2,340,520.440 Meters Lafc 43.780 Long: -87.464
62. Click "File>Save", then "File>Exit".
63. We still need to exit the SDMPB
SDM Project BuilderJ
File SDMProjectBuilder Extensions
o New
O i H ~
B Open...
Map
H Save
Hi Save As...
®i Print Layout...
IS Reset Window Layout
OExiTj)
S&" Lxtension Manager...
S& Open sample project..
B EJ NHDPius Elevation (elev r
[] 17.680-26,122
40
-------
In this example, HSPF input files can be found in "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-
PEST_1\HSPF". Three input files are required for HSPF modeling:
1. 04030101.uci: The User Control Input File, a flat file that contains all non-time series data,
including model parameters.
2. 04030101.wdm: The binary Watershed Data Management file that captures modeling flow
results such as time series of flow calculation
3. met.wdm: The binary Watershed Data Management file that contains meteorological data
(precipitation, temperature, potential evapotranspiration, etc.) for HSPF modeling.
File Edit View Tools Help
Organize* Include in library * Share with » Burn »
A
SDMPB
> j
bin
> J
etc
£> j
HSPF-PEST
A
HSPF-PEST1
>
EPAWaters
HSPF
HSPF-PEST
£
>
hud.2
LocalData
met
t>
NHDPIus
NLCD
NWIS
pes
- 4
15 items
15 items
The microbial loading rates published in the HSPF *.uci file will need to be updated; these vary by
land-use type and subwatershed.
41
-------
MODIFY MICROBIAL LOADING RATES IN THE HSPF *.UCI FILE
HSPF considers up to nine land-use types. For this application only four land-use types will be populated
with microbial loading rates in the example. This section describes how the user can modify the
microbial loading rates to land-use types.
Identify Microbial Loading Rates in the HSPF *.uci File which need to be Set Equal to Zero
The Microbial Source Module (MSM) estimates microbial loading rates to four land-use types:
Urbanized/Built, Forest, Cropland, and Pasture. The SDMPB retrieves these estimates and automatically
pre-populates the HSPF input *.uci file with microbial loading rates in Cells/ac/d. [Note: The UCI file
writes the units as "Lbs/ac.d".] These rates are published for nine HSPF-designated land-use types:
• Water/Wetlands
• Urban
• Barren or Mining
• Forest
• Upland Shrub Land
• Agriculture - Cropla
• Grass Land
• Agriculture - Pastur
• Traditional
where Urban, Forest, Agriculture - Cropla, and Agriculture - Pastur correspond to Urbanized/Built,
Forest, Cropland, and Pasture, respectively, in the MSM documentation (Whelan et al., 2017i). The
remaining land-use types are pre-populated with loading rates that represent holding places and at
levels significantly smaller than those associated with Urban, Forest, Cropland, and Pasture.
This section describes the process for modifying microbial loading rates in the HSPF *.uci file by using a
text editor or the HSPF user interface. In this example, microbial loading rates will be zeroed-out for the
following five land-use types while leaving the others (Urban, Forest, Cropland, and Pasture) unchanged:
• Water/Wetlands
• Barren or Mining
• Upland Shrub Land
• Grass Land
• Traditional
Two different procedures for zeroing out microbial loading rates are discussed, of which only one should
be implemented:
• Modify Microbial Loading Rates in the HSPF *.uci File by Using a Text Editor
• Modify Microbial Loading Rates in the HSPF *.uci File by Using the HSPF User Interface
42
-------
Modify Microbial Loading Rates in the HSPF *.uci File by Using a Text Editor
64. Using a text editor (e.g., WordPad), open the *.uci file, in this case "04030101.uci", located in the
working folder: <...\HSPF\
e.g., "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF").
File Edit View Tools Help
Organize 1
QD Edit ~ Share with '
EPAWaters
HSPF
HSPF-PEST
hud.2
LocaiData
met
NHDPIus
NLCD
NWIS
pes
Burn New folder
Name
Q 04030101.wsd
[S?j met.wdm
[TJ 04030101.wdm
m - 13 ®
Date modified J
6/30/20171:16 PM
6/30/201711:11 AM
6/30/20171:21 PM
| J ] a 04030101.uci
L_, HSPF.log
~ 04030101.seg
~ 04030101.rch
ndn^rnm ntf
tm/mm,'!') nhii
L
04030101.uci Date modified: 6/30/20171:22 PM
UO File Size: 106 KB
Date created: 6/30/20171:16 PM
Opens the document with WordPad.
Edit
Scan for Viruses...
Open with
Share with
Zip and Share (WinZip E
WinZip
Restore previous versioi
65. A file, similar to the following, will open
~
f T04030101.ucP"WordPac!^
r
Courier New * 11
B I 2 abt X. x' .
Font
a#
== Picture Paint Date and Insert
drawing time object [91 Select all
|rdn
GLOBAL
OCI Created by WinHSPF for 04030101
START 2000/01/01 00:00 END 2012/12/31 24:00
RON INTERP OOTPT LEVELS 1 0
RESUME 0 RON 1 UNITS
END GLOBAL
FILES
'
MESSU 24
91
WDMl 25
WDM2 26
BINO 92
END FILES
OPN SEQUENCE
INGRP
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
IMPLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
IMPLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
PERLND
•*< FILE NAME--
04030101.ech
04030101.out
04030101.wdm
met.wdm
04030101.hbn
INDELT 01:00
501
502
503
504
505
506
507
508
502
401
402
403
404
405
406
407
408
402
901
902
903
904
905
906
907
100% @
43
-------
Identify Land-use Types by Subwotershed
66. To identify which land-use types are associated with which subwatersheds (or subbasins), scroll
down to the "GEN-INFO" section.
Picture Paint Date and Insert
drawing time object
GEN-INFO
www
Unit-systems Printer
t-series Engl Metr
BinaryOut
Engl Metr
x -
X
in out
101
Water/Wetlands
1 1
0
0
92
0
102
1 1
0
0
92
0
103
barren or Minmcr
1 1
0
0
92
0
104
1 1
0
0
92
0
105
[Jr-i 1 snrl Hhriih tanrl
1 1
0
0
92
0
ioe
| Agriculture - Cropla |
1 1
0
0
92
0
107
1 1
0
0
92
0
108
I Agriculture - Pastur |
1 1
0
0
92
0
201
water/ wet^nos
1 1
0
0
92
0
202
Urban
1 1
0
0
92
0
203
Barren or Mining
1 1
0
0
92
0
204
Forest
1 1
0
0
92
0
205
Upland Shrub Land
1 1
0
0
92
0
206
Agriculture - Cropla
1 1
0
0
92
0
207
Grass Land
1 1
0
0
92
0
208
Agriculture - Pa3tur
1 1
0
0
92
0
301
Water/Wetlands
1 1
0
0
92
0
302
Urban
1 1
0
0
92
0
304
Forest
1 1
0
0
92
0
305
Upland Shrub Land
1 1
0
0
92
0
306
Agriculture - Cropla
1 1
0
0
92
0
307
Grass Land
1 1
0
0
92
0
308
Agriculture — Pastur
1 1
0
0
92
0
401
Water/Wetlands
1 1
0
0
92
0
402
Urban
1 1
0
0
92
0
403
Barren or Mining
1 1
0
0
92
0
404
Forest
1 1
0
0
92
0
405
Upland Shrub Land
1 1
0
0
92
0
406
Agriculture - Cropla
1 1
0
0
92
0
407
Grass Land
1 1
0
0
92
0
408
Agriculture - Pastur
1 1
0
0
92
0
501
Water/Wetlands
1 1
0
0
92
0
502
Urban
1 1
0
0
92
0
503
Barren or Mining
1 1
0
0
92
0
504
Forest
1 1
0
0
92
0
505
Upland Shrub Land
1 1
0
0
92
0
506
Agriculture - Cropla
1 1
0
0
92
0
507
Grass Land
1 1
0
0
92
0
508
Agriculture - Pastur
1 1
0
0
92
0
100% © ' Q-
©
44
-------
Note that the subwatersheds are numerically numbered (e.g., 101, 102,etc.), where each
subwatershed ID is represented by the first character in number (e.g., "1" in "101" refers to
Subwatershed 1). The last two numbers represent the land-use type ID (e.g., 01 is Water/Wetlands,
02 is Urban, etc.). So, if Subwatershed 5 contains an Urban land-use type, then "502" will be in the
listing. In this example, eight of the nine land-use types are represented in the basin. The four land-
use types that will not be zeroed out, have been highlighted whose IDs are as follows:
x02 Urban
x04 Forest
x06 Agriculture - Cropla
X08 Agriculture-Pastur
Modify Microbial Loading Rates
67. Scroll to the section, titled "MON- ACCUM".
Home View
Cut I j
Courier New
s) Copy —
Paste b I U s
Clipboard '
~
1
'111
K X, X2
Font
, 2 , • •
- A" a' iF := ' *=
13E Mi
Picture Paint Date and Insert
drawing time object
Find
5ac Replace
Igj Select all
Editing
• • 7 •
MON-ACCUM
** Value at start
** _x^^j^JA*^FE]^MAR
^^^TOoc^oocOTooc^
of each month
APR MAY JUN
for accum
JUL AUG
rate of QUALOF (lb/ac.
SEP OCT NOV DEC
day)
S
* x -
105
* Value at start
x JAN FEB MAR
8.6e68.6e68.6e68
> Value at start
x JAN FEB MAR
100001000010000
> Value at start
x JAN FEB MAR
6.7e76.7e76.7e76
> Value at start
x JAN FEB MAR
100001000010000
> Value at start
x JAN FEB MAR
6.7e76.7e76.7e75
> Value at start
x JAN FEB MAR
100001000010000
> Value at start
x JAN FEB MAR
6.7e76.7e76.7e7
le5 le5 le5
of each month
APR MAY JUN
.6e68.6e68.6e68
of each month
APR MAY JUN
le5 le5 le5
of each month
APR MAY JUN
.7e76.7e76.7e76
of each month
APR MAY JUN
le5 le5 le5
of each month
APR MAY JUN
.2e9 lel06.9e9
of each month
APR MAY JUN
le5 le5 le5
of each month
APR MAY JUN
lelO 2el0 2el0
le5 le5le5100001000010000
for accum rate of QUALOF (lb/ac. day)^
JUL AUG SEP OCT NOV DEC
6e68.6e68.6e68.6e68.6e68.6e6
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
le5 le5 le5100001000010000 /
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.7e76.7e76.7e76.7e7 6.7e7 6.7e7
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
le5 le5 le5100001000010000 /
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
5e93.4e91.8e91.7e96.7e76.7e7
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
le5 le5 le5100001000010000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
lelO lelO lelO Iel06.7e76.7e7
*** - Value at start
c JAN FEB MAR
8.6e68.6e68.6e68
>¦ Value at start
c JAN FEB MAR
100001000010000
>- Value at start
c JAN FEB MAR
6.7e76.7e7 6.7e76
*¦ Value at start
c JAN FEB MAR
100001000010000
> Value at start
c JAN FEB MAR
6.7e76.7e76.7e7
»¦ Value at start
c JAN FEB MAR
ot each month
APR MAY JUN
le5 le5 le5
of each month
APR MAY JUN
.6e68.6e68.6e68
of each month
APR MAY JUN
le5 le5 le5
of each month
APR MAY JUN
.7e76.7e76.7e76
of each month
APR MAY JUN
le5 le5 le5
of each month
APR MAY JUN
7e9 lel09.3e96
of each month
APR MAY JUN
tor accum rate ot QUALOF (lb/ac .^iay)
JUL AUG SEP OCT NOV DEC
le5 le5 le5100001000010000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.6e68.6e68.6e68.6e68.6e68.6e6
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
le5 le5 le5100001000010000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.7e76.7e7 6.7e76.7e76.7e76.7e7
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
le5 le5 le5100001000010000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.8e94.6e92.4e92.3e96.7e76.7e7
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
ioo% Q
©
45
-------
The first subwatershied with its eight land-use types have been highlighted. The arrows represent the
rows in the first subwatershed that need to be zeroed out. Obviously, this is repeated for each
subwatershed.
68. Zero out those rows that are represented by the following land-use types:
xOl Water/Wetlands
x03 Barren or Mining
x05 Upland Shrub Land
x07 Grass Land
04030101.uci -
I- I ¦
Copy
Clipboard
Courier New T 11
| B j I U at* x2 xi
Font
A a"
Paragraph
. . . 4 . .
Picture Paint Date and Insert
T drawing time object
MON-ACCUM
***
x - x
101
www
v,** x - X
102 8.
www
*** X - X
103
WWW
X -
104 6,
***
WWW X — X
105
WWW
*** X ~ X
106 6,
***
*** x - x
107
www
*** x - x
108 6.
www
www x - x
201
www
www x - x
202 8.
www
www x - X
203
www
WWW x — x
204 6,
www
www x - X
205
www
WWW X - X
206 6
www
Value
JAN
0
Value
JAN
6e68.
Value
JAN
0
Value
JAN
7e76.
Value
JAN
0
Value
JAN
7e76.
Value
JAN
0
Value
JAN
7e76.
Value
JAN
0
Value
JAN
6e68.
Value
JAN
0
Value
JAN
7e76.
Value
JAN
0
Value
JAN
7e7 6.
Value
at
FEB
0
at
FEB
6e68
at
FEB
0
at
FEB
7e7 6
at
FEB
0
at
FEB
7e76
at
FEB
0
at
FEB
7e7 6
at
FEB
0
at
FEB
6e68
at
FEB
0
at
FEB
7e7 6
at
FEB
0
at
FEB
7e7 6
at
start
MAR
0
start
MAR
. 6e68
start
MAR
0
start
MAR
. 7e7 6
start
MAR
0
start
MAR
. 7e75
start
MAR
0
start
MAR
. 7e7
start
MAR
0
start
MAR
. 6e68
start
MAR
0
start
MAR
. 7e7 6
start
MAR
0
start
MAR
. 7e7
start
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
.6e68.6e68.6e68
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
.7e76.7e76.7e76
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
.2e9 lel06.9e9
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
lelO 2el0 2el0
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
.6e68.6e68.6e68
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
.7e76.7e76.7e76
of each month
APR MAY JUN
0 0 0
of each month
APR MAY JUN
7e9 lel09.3e96
of each month
for accum
JUL AUG
0 0
for accum
JUL AUG
.6e68.6e68
for accum
JUL AUG
0 0
for accum
JUL AUG
.7e7 6.7e7 6
for accum
JUL AUG
0 0
for accum
JUL AUG
5e93.4e91
for accum
JUL AUG
0 0
for accum
JUL AUG
lelO lelO
for accum
JUL AUG
0 0
for accum
JUL AUG
. 6e68.6e68
for accum
JUL AUG
0 0
for accum
JUL AUG
.7e76.7e76
for accum
JUL AUG
0 0
for accum
JUL AUG
.8e94.6e92
for accum
rate
SEP
0
rate
SEP
. 6e68
rate
SEP
0
rate
SEP
. 7e7 6
rate
SEP
0
rate
SEP
. 8e91
rate
SEP
0
rate
SEP
lelO
rate
SEP
0
rate
SEP
. 6e68
rate
SEP
0
rate
SEP
. 7e7 6
rate
SEP
0
rate
SEP
. 4e92
rate
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
.6e68.6e68
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
.7e76.7e76
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
.7e96.7e7 6
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
lel06.7e7 6
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
. 6e68.6e68
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
.7e76.7e76
of QUALOF
OCT NOV
0 0
of QUALOF
OCT NOV
.3e96.7e76
of QUALOF
(lb/ac
DEC
0
(lb/ac
DEC
. 6e6
(lb/ac
DEC
0
(lb/ac
DEC
. 7e7
(lb/ac
DEC
0
(lb/ac
DEC
. 7e7
(lb/ac
DEC
0
(lb/ac
DEC
. 7e7
(lb/ac
DEC
0
(lb/ac
DEC
. 6e6
(lb/ac
DEC
0
(lb/ac
DEC
. 7e7
(lb/ac
DEC
0
(lb/ac
DEC
. 7e7
(lb/ac
.day)
. day)
-day)
-day)
day)
day)
day)
day)
-day)
• day)
-day)
day)
day)
~
100% ©
-day)
-day)
¦—o-
©
46
-------
There is no "Traditional" land-use type in the file.
69. Save the file and exit.
Modify Microbial Loading Rates in the HSPF *.uci File by Using the HSPF User Interface
70. Open WinHSPF by double-clicking (left) on the icon to execute WinHSPF3.0. If the icon cannot be
found on the Desktop screen, locate the executables on the hard drive (WinHSPF,exe), typically in
<...\BASINS45\models\WinHSPF30\bin\>.
71. The following WinHSPF window appears.
f|n*i Hydrological Simulation Program - Fortran
X II
| Point Sources | Met Segs | Land Surface ^
2
i
o
3
X
rD
TJ
u
fill
¦ ®k>i m
72. Select "File>Open".
Hydrological Simulation Program - Fortran (h
File
Edit Functions Help ~ £
C Open }
i Close
Save
Ij Save As...
¦ Exit
II 1
47
-------
73. The following window appears. Browse to the *.uci folder. In this example, it can be found at
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily\04030101.uci",
then click "Open".
Locate UCI file to open * • ^
,v\ « HSPF-PEST ~ Flow ~ Daily
~ | I) Search Daily p
Organize ~ New folder
iee - a ®
J| SDMPB
•. bin
, etc
iJ HSPF-PEST
jj HSPF-PEST1
EPAWaters
lit HSPF
J* HSPF-PEST
j.. Flow
il
Name
| a 04030101. uci
. Daily
Microbe
Jjl hudL2
. Local Data
< i 1
-fe 04030101.uci Date modified: 7/14/20171 2j22 PM
B UCI File Size: 106 KB
Fi 1 e name: 04030101 .uci
Date created: 7A0/201710:31 AM
^ [ UCI files (*,ud)
Open ] [ Cancel
74. The HSPF project workflow for the Manitowoc River Basin appears.
The user may want to copy the original UCI file and save it someplace safe, in case an unforeseen
accident occurs with the one being edited.
48
-------
75. Select "Functions>lnput Data Editor" or click in the tool bar to view the calibrated HSPF
microbial parameters.
Hydrological Simulation Program - Fortran (HSPF): 04030101_flow.u J
File Edit
Functions Help ~ id ¦ ® 6 A
Reach Editor
Simulation Time and Met Data
Land Use Editor
¦_ _ ¦ ¦
RCHRES 8J-
1 &
^ Input Data Editor)
1 i
KUllULdllL liyitiLTIOn
Point Source Editor
Output Manager
76. The following "Input Data Editor" window appears. Only bolded sections have records in the UCI
file. For example, "FORMATS" does not contain data, but "FTABLES" does.
a. Expand "PERLND" by clicking "+" at the left and "PQUAL".
b. Choose "MON-ACCUM".
GLOBAL
OPN SEQUENCE
FTABLES
EXT SOURCES
FORMATS
NETWORK
EXT TARGETS
SPEC-ACTIONS
SCHEMATIC
MASS-LINK
EI PERLND
0 GENERAL
0 ATEMP
0- SNOW
0 PWATER
0- SEDMNT
0- PSTEMP
0- PWTGAS
E PQUAL
NQUALS
PQL-AD-FLAGS
QUAL-PROPS
QUAL-INPUT
MON-POTFW
MON-POTFS
MON-ACCUM
MON-SQOLIM
MON-IFLW-CONC
MON-GRND-OONC
MSTLAY
0 PEST
0 NITR
0 PHOS
TRACER
[±1- IMPLND
0- RCHRES
A-COPY
1-PLTGEN
i- DISPLY
0 DURANL
i-GENER
0 MUTSIN
0 BMPRAC
i- REPORT
FILES
CATEGORY
MONTH-DATA
PATHNAMES
Close
49
-------
77. The screen containing the parameter values of "ACQOP" ("MON-ACCUM") appear.
i| Edit Table PERLND:MON-ACCUM^
W Show description Occurrence 11 - Microbe
"3
I ricf-rjrtfjf.p.
1 m IA 1 AM
I ni IACCD
Ini IAMAD
I ni IAADD
Ini IAMAV
I Ol IA 11 IM
Ini ia ii ii
I ni i a a i m
Ini IACCD
Ini lAnrT
Ini lAMnv
Ini lAncr
101
Water/Wetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000 4
102
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
103
Barren or Mining
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000 4
104
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
105
Upland Shrub Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000 4
106
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
5.2e9
1E+10
6.9e9
5E+09
3.4e9
1.8e9
1.7e9
6.7e7
6.7e7
107
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000 4
JOS
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
1E+10
2E+10
2E+10
1E+10
1E+10
1E+10
1E+10
6.7e7
6.7e7
201
Water/Wetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000 4
202
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
203
Barren or Mining
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000 4
204
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
205
Upland Shrub Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
206
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
7E+09
1E+10
9.3e9
6.8e9
4.6e9
2.4e9
2.3e9
6.7e7
6.7e7
207
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
208
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
2E+10
3E+10
2E+10
2E+10
2E+10
2E+10
2E+10
6.7e7
6.7e7
301
Water/Wetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
302
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
304
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
305
Upland Shrub Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
306
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
1.8e9
3.3e9
2.3e9
1.7e9
1.2e9
6.3e8
6.1e8
6.7e7
6.7e7
307
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
308
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
3.5e9
4.8e9
3.8e9
3.2e9
2.8e9
2.5e9
2.5e9
6.7e7
6.7e7
401
WaterAVetiands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
402
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
403
Barren or Mining
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
404
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
405
Upland Shrub Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
406
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
5.4e9
1E+10
7.2e9
5.2e9
3.5e9
1.8e9
1.8e9
6.7e7
6.7e7
407
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
408
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
8.9e9
1E+10
9.9e9
8.3e9
6.9e9
5.9e9
5.9e9
6.7e7
6.7e7
501
Water/Wetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
CAT
i i-i
rtr-r
Table: HON-ACCDM, Monthly values of accumulation rate of QUALOF at start of each month. This table is only required if VQOFG in
Table-type QUAL-PROPS is 1- This table should be repeated for each quality constituent.
*** Value at start of each month for accum rate of QUALOF (lb/ac.day)
*** x - x JAN FSB MAS APR MAY JON JUL AUG SSP OCT NOV DEC
The first subwatershed (i.e., lxx) with its eight land-use types (e.g., 101, 102, 103, ..., 108) have been
circled in red. Example rows needing to be zeroed-out are xOl, x03, x05, and x07, where the example
arrows are shown.
50
-------
78. Zeroed-out rows designated by xOl, x03, x05, and x07, of which the first subwatershed is circled in
red.
|| Edit Table PERLND:MON-ACCUM *
W Show description Occurrence 11 - Microbe
QpNum I Description
Iquajan Iquafeb Iquamar Iquaapr Iquamay Iquajun Iquajul Iquaaug Iquasep Iquaqct Iquanqv Iquadec a
Water/Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
102
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
103
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
104
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
105
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
106
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
5.2e9
1E+10
6.9e9
5E+09
3.4e9
1.8e9
1.7e9
6.7e7
6.7e7
107
Grass Land
0
0
0
0
0
0
0
0
0
0
0
|jp8
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
1E+10
2E+10
2E+10
1E+10
1E+10
1E+10
1E+10
6.7e7
6.7e7
201
WaterAVetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
202
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
203
Barren or Mining
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
204
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
205
Upland Shrub Larvd
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
206
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
7E*09
1E+10
9.3e9
6.8e9
4.6e9
2.4e9
2.3e9
6.7e7
6.7e7
207
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
208
.Agriculture - Pastur
6.7e7
6.7e7
6.7e7
2E+10
3E+10
2E+10
2E+10
2E+10
2E+10
2E+10
6.7e7
6.7e7
301
WaterAVetiands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
302
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
304
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
305
Upland Shrub Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
306
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
1.8e9
3.3e9
2.3e9
1.7e9
1.2e9
6.3e8
6.1e8
6.7e7
6.7e7
307
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
308
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
3.5e9
4.8e9
3.8e9
3.2e9
2.8e9
2.5e9
2.5e9
6.7e7
6.7e7
401
Water/Wetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
402
Urban
8.6e6
8.6e6
B.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
403
Barren or Mining
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
404
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
405
Upland Shrub Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
406
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
5.4e9
1E+10
7.2e9
5.2e9
3.5e9
1.8e9
1.8e9
6.7e7
6.7e7
407
Grass Land
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
408
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
8.9e9
1E+10
9.9e9
8.3e9
6.9e9
5.9e9
5.9e9
6.7e7
6.7e7
501
WaterAVetlands
10000
10000
10000
100000
100000
100000
100000
100000
100000
10000
10000
10000
Table: MQN-ACCUM, Monthly values of accumulation rate of QUALQF at start of each month- This table is only required if VQGFG in
Table-type QUAL-PRQPS is 1. This table should be repeated for each quality constituent -
Parameter:
*** Value at start of each month for accum rate of QUALOF (lb/ac.day)
*** x - x JAN FEB MAR APR MAY JUN JUL AUG SEP OCT NOV DEC
Apply
Help
51
-------
79. When all appropriate rows have been zeroed-out, the screen will look like the following:
W Show description Occurrence [1 - Microbe
QpNum | Description
Iquajan Iquafeb Iquamar Iquaapr Iquamay Iquajun Iquajul Iquaaug IqUASEP IqUAOCT IqUANOV IQUADEC *
101
Water/Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
102
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
B.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
103
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
104
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
105
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
106
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
5.2e9
1E+10
6.9e9
5E+09
3.4e9
1.8e9
1.7e9
6.7e7
6.7e7
107
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
108
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
1E+10
2E+10
2E+10
1E+10
1E+10
1E+10
1E+10
6.7e7
6.7e7
201
Water/Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
202
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
203
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
204
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
205
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
206
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
7E+09
1E+1Q
9.3e9
6.8e9
4.6e9
2.4e9
2.3e9
6.7e7
6.7e7
207
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
208
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
2E+10
3E+10
2E+10
2E+10
2E+10
2E+10
2E+10
6.7e7
6.7e7
301
Water/Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
302
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
304
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
305
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
306
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
1.8e9
3.3e9
2.3e9
1.7e9
1.2e9
6.3e8
6.1e8
6.7e7
6.7e7
307
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
308
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
3.5e9
4.8e9
3.8e9
3.2e9
2.8e9
2.5e9
2.5e9
6.7e7
6.7e7
401
Water/Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
402
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6eS
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
403
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
404
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
405
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
406
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
5.4e9
1E+10
7.2e9
5.2e9
3.5e9
1.8e9
1.8e9
6.7e7
6.7e7
407
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
408
Agriculture - Pastur
6.7e7
6.7e7
6.7e7
8.9e9
1E+10
9.9e9
8.3e9
6.9e9
5.9e9
5.9e9
6.7e7
6.7e7
501
Water/Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
502
Urban
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
8.6e6
503
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
504
Forest
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
6.7e7
505
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
506
Agriculture - Cropla
6.7e7
6.7e7
6.7e7
4.4e9
8.5e9
5.9e9
4.3e9
2.9e9
1.5e9
1.5e9
6.7e7
6.7e7
507
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
Table:
MON-ACCOM, Monthly
values
of accumulation r
ite of QUALOF at start of each
month-
This table
is only
required
if VQOFG
n Table-
type QUAL-PROPS is 1- This table should be repeated for each quality constituent.
¦ Value at start of each month for accum rate of QUAIiOF (Ib/ac.day)
x - x JAN FSB MAR APR MAY JUN JUL AUG SEP OCT NOV DEC
80. Click "Apply", then "Ok".
81. Click "File>Save", then "File>Exit".
52
-------
EXECUTING HSPF
82. If HSPF is not open, activate the WinHSPF3.0 icon on the Windows desktop:
83. if the icon cannot be found on the Desktop, locate the executable on the hard drive (WinHSPF.exe),
typically in "C:\BASINS45\models\WinHSPF30\bin\".
~ Computer ~ OSDisk (CO ~ BASINS45 ~ models ~ WinHSPF30 ~ bin ~
File Edit View Tools Help
Organize ~ |sg] Open
£ BASINS45
bin
data
docs
etc
models
GWLF-E
Burn
New folder
0
Jii HSPF
jj WinHSPF30
bin
Jill logs ~ 4
WinHSPF.exe Date modified: 9/10/2015 3:34 PM
Application Size: 559 KB
Name
starter
Q HspfEngineNet.exe
HI StatusMonitor.exe
WinHSPF.exe
1'%] atcControls.dll
I'Cj atcData.dll
l'%j atcFtableBuilder.dll
|"%>i atcSegmentation.dll
[%1 atcUQ.dll
Date modified
2/13/2017 10:23 AM
12/17/2012 4:33 PM
12A7/2012 4:26 PM
i~ ' a ®
Type
File folder
Application
Application
9/10/2015 3:34 PM Application
11/18/20141:41 PM
11/18/20141:41 PM
1/8/2015 3:33 PM
11/18/20141:41 PM
9/1/2016 2:58 PM
Date created: 2/13/2017 10:23 AM
1 item selected
^ , Computer
Application extens...
Application extens...
Application extens...
Application extens...
Application extens...
84. The following WinHSPF window appears.
File Edit Functions Help ~ £3? SI ~ *1
53
-------
85. In the window below, select "File>Open".
fell Hydrological Simulation Program - Fortran ({-
File
Edit Functions Help lJ ill
j| Q^Open ^
Close
Save
i
Ij Save As...
¦ Exit
1 i
86. The following window appears. Browse
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF\04030101.uci" and click "Open".
Locate UCI file to open
i^r
« SDMPB ~ HSPF-PEST 1 ~ HSPF
Search HSPF
Name
Organize » New folder
iJLi PEST14
SARATi m eSeri esllti I ity
Ji) SDMPB
.Ji bin
etc
HSPF-PEST
HSPF-PEST1
EPAWaters
HSPF
. HSPF-PEST
. Flow
X- Microbe
hud.2 4 |
04030101,uci Date modified: 7/13/2017 10:33 AM
UCI File Size; 106 KB
1=2
a ®
Date it
,tt! 04030101.uci
7/13/21
a
Filename: 04030101.1
Date created: 6/30/20171:16 PM
Ltd files (*.uci)
~
Open
Cancel
The HSPF project on Manitowoc River Basin will appear in the HSPF GUI, with the workflow schematic
shown below. The WinHSPF UI shows linkage of subwatersheds, proportion of land use type in each
subwatershed, etc. Details about WinHSPF Ul can be found in the WinHSPF Manual, typically in
"...\BASINS45\docs\WinHspf30.chm".
54
-------
87. The following screen appears presenting the basin workflow.
88. To run the HSPF simulation, click the "Run Simulation" icon. Save the HSPF project by clicking "File",
then "Save" on the main menu bar. Leave the HSPF workflow schematic screen open, since you
may want to refer to it while operating in the BASINS interface.
4
Run Simulation
89. A progress window appears.
55
-------
90. When the simulation finishes, the progress window will disappear, and you will find output files in
the working folder, similar to the following.
File Edit View Tools Help
Organize *
[gEdit ~
SDMPB
bin
etc
HSPF-PEST
HSPF-PESTJL
EPAWaters
Share with *
HSPF
l> HSPF-PEST
> hucl2
LocalData
met
> NHDPIus
NLCD
NWIS
pes
UCI Modified Files
Pour_Point
CHh.^DR Annlirafinnr^llVorr
Burn »
Name
£] 04030101. ech
~ 04030101.hbn
~ 04030101.hbnhead
g 04030101.out
~ 04030101.psr
~ 04030101.ptf
~ 04030101.rch
~ 04030101.seg
[ffi] 04030101.uci
@ 04030101.units.dbf
,ff 04030101.wdm
Q 04030101 .wsd
IT ERROR.HL
~ HSPF,log
jgj met.wdm
1== " SI #
- < I
rrr
04030101.UCI Date modified: 7/13/2017 10:33 AM
UCI File Size: 106 KB
1 item selected
Computer
56
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SECTION 2
CALIBRATING FLOW-RELATED PARAMETERS
DOWNLOADING AND EXPORTING A TIME SERIES OF FLOW OBSERVATIONS
For flow-related parameter calibration, observed discharge data are required. This section describes
discovery, access, and retrieval of observed discharges associated with the USGS gaging station near the
pour point of the Manitowoc River basin. BASINS will be used initially to download a time series of flow
observations and export those data in a form consistent with input requirements of PEST.
91. A BASINS shortcut icon should appear on the computer's desktop.
If the icon cannot be found on the Desktop, locate the executable ("BASINS.exe") on the hard drive,
typically in ...\BASINS45\bin\, as illustrated below.
File Edit View Tools Help
O rg a
§ Ope
Buri
Newfolde
BASIN S45
bin
ApplicationPlugins
Ju Cligen
,. cs
D4EMDownload
de
. el
Jk en
es-ES
l. fa
BASINS.exe Date modified: 12/20/2012 4:42 PM
Application Size: 2.73 MB
Name
g ERROR.RL
[ i UpdateURL.txt
1%1 MapWinUtility.dll
11 default.mwcfg
m StatusMonitor.exe
|%j DynamicInterop.dll
BASINS.e
|%'| MapWinGeoProc.dll
B Loao.Dna
Date modified
6/20/20171:54 PM
12/23/2016 1:28 PM
12/22/2016 5:40 PM
12/22/2016 4:52 PM
8/31/2016 2:40 PM
9/1/2015 4:08 PM
i=' a i
Type
FIL File
Text Document
Application extens..
MWCFG File
Application
Application extens..
12/20/2012 4:42 PM Application
< L
9/21/20123:25 PM
8/6/2012 2:16 PM
Application extens..,
PNG imaae
Date created: 2/13/201710:22 AM
1 item selected
, Computer
57
-------
92. Double-click left on the icon to execute BASINS. The User Interface (Ul) of BASINS appears. Click
"Close" on the "Welcome to BASINS 4.1" window, even though BASINS4.5 is being executed.
File Watershed Delineation ¦Models wi Compute ."Launch H Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
i ID £i 4l : Lq ig I43 ® 1%
New Open Save Print Settings Add Remove Clear i Symbology Categories Query Properties Table
; ® JB> y, £1 JS ^ % SI' © 5- Qpen Project".
58
-------
94. To open your Mapwindow project file (in this case, "Manitowoc.mwprj"), which was created by
SDMPB and is located C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\" in this
example, select "Manitowoc.mwprj", and click "Open".
| Open
IQS
« SDMPB ~ HSPF-PEST 1 ~
Search HSPF-PEST 1
Organize ~
New folder
SDMPB
bin
etc
. HSPF-PEST
HSPF-PEST1
. EPAWaters
M hspf
. HSPF-PEST
J, hud2
LocalData
met
NHDPIus
1. NLCD
NWIS
iee - a #
Name
EPAWaters
ill HSPF
HSPF-PEST
. hud.2
LocalData
met
NHDPIus
NLCD
NWIS
pes
U UCI Modified Files
JT HSPF-PEST-l.mwprj
rrr
T
HSPF-PEST-l.mwprj Date modified: 8/2/2017 11:11 AM
MWPRJ File Size: 23.0 KB
Filename: HSPF-PEST-l.mwprj
Open
Cancel
^BASINS 4.1 - Manitowt
File till Watershed Delineation »* Models - * Compute 11 Launch k11 Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
; U h b s ©¦ : La La io 9 IS l» B» is
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table
~ p®| £> P - IP ^ II' O ^ ib shp shp J ®
Pan | In | Out Extent Selected Previous Next Layer Select Deselect Measure Identify Label Mover New Insert Add Remove Copy Paste Merge Erase Erase beneath
ta-a-a-?-/-«
Legend ** x 7* ~ . ~ * * ~ '~ ~ L 7
Layers [Toolbox| ~* *~~~* ~ ~ ~ ~ IcALA?* ~ f * /
B@ Point Sources and Withdrawals
~~ Permit Compliance System
~
30 NLDAS Grid Center <$>
~
B0 Output Points
~
B0 Septic
~
B0 Animals ^
~
B0 Point Sources
~
~~ Bacteria ^
95. The following map layer appears.
[1 unnamed ~ X: 579,353.069 Y: 2,371,042.391 Meters Lat: 44.130 Long:-88.729
BE Reach File. V1
BD NAWQA Studv Area Unit Boundarie
Preview Map
59
-------
Register Simulation Results for the Manitowoc River Basin
96. Go to the "File", "Manage Data" menu in the BASINS menu bar. With the "Data Sources" window
open, see that no times series data sources are pre-loaded except, possibly, a met.wdm file. Time
series data sources from the HSPF simulation are needed to view the simulation results, so they will
be added.
il| Data Sources
[=¦
©
File Analysis Help
Ei
i ¦C:\Users''.gwhelarv.iemTechnologies'SDMPB\HSPF-PEST\meftmet.wdm (S3)
97. To add time series data source, select "File", then "Open" from the "Data Sources" window. A
selection window appears:
Select a Data Source
File
Basins Observed Water Quality DBF
¦ CliGen Output
HSPF Binary Output
Integrated Surface Hourly Data
¦ NASA GDS File
• NOAA Hourly Precip Data, Archive Format. TD-3240
NOAA Summary of the Day, .Archive Format, TD-320D
Read Data With Script
STORET Water Quality
• SWAT Data Files
¦SWATOutput DBF
¦ SWMM Input
Timeseries DBF
Timeseries EXCEL
Timeseries SWMM5 Output
¦ USGS RDB File
WDM Time Series
WRDB Archive
Ok
Cancel
60
-------
98. Select "WDM Time Series", then "OK". Navigate to the project folder, and select the
"04030101.wdm". It contains the output time series written from HSPF to WDM.
file
dijl Select WDM Time Series file to open
(Wl
« SDMPB ~ HSPF-PEST 1 ~ HSPF
Search HSPF
Organize ~ New folder
SDMPB
bin
etc
HSPF-PEST
HSPF-PEST1
EPAWaters
HSPF
HSPF-PEST
. hud2
LocalData
met
NHDPIus
NLCD
NWIS
pes
m - a
IT
Name
H 04030101 .wdm
jBP'l met.wdm
04030101.wdm Date modified: 7/13/2017 10:32 AM
WDM File Size: 48.8 MB
Date created: 6/30/2017 1:16 PM
Filename: 04030101 .wdm
WDM Files (*,wdm)
Open
Cancel
Note: For the pour point simulation, the *.wdm file name may be "SDMProject" (e.g.,
SDMProject.wdm) for a pour point analysis. The name may reflect the HUC-8 ID number (i.e.,
"Q4030101.wdm") as in this case. Do not select the met.wdm file.
99. With this data source open, the file name similar to the following appears in the "Data Sources"
window.
||| Data Sources
El
File Analysis Help
B-WDM
¦C:'1,Users\§whelan',.iemTechrK5logies\SDMP&HSPF-PESTVrsef,rriet.wtIm (63)
J:\Users\gwhelan,iemTechnologies\SDMPBliHSPF-PEST\HSPF\04030101.wdm (185)
Timeseries::WDM
61
-------
Download Discharge Data Associated with Gage Stations in the Manitowoc River Basin
This Section describes the procedure for downloading USGS gage station daily flow observations for the
entire Manitowoc River Basin and daily and instantaneous flow observations at the pour point of the
Manitowoc River Basin.
Daily Discharge Time Series for USGS Gaging Stations on the Manitowoc River Basin
100. To download locations of observed discharge data associated with flow gage stations in the
Manitowoc River Basin, select "File>Download Data" on the menu bar.
File Watershed Delineation
Model
(LI New
Open Project
£¦ Save
& Save As
revious
4 Archive/Restore Project...
^Download Data)
Opel! uaia
H Manage Data
1 i| New Data
s$> «
? Save Data In... ~
101. The "Download Data" window appears; check "Discharge", then click "Download".
Region to Download | Hydrologic Unit04030101
BASINS
I i DEM Shape | GIRAS Land Use Q NED Q Census ) 1 Met Stations
~ DEM Grid ~ Legacy STORET ~ NHD ~ 303(d) ~ Met Data
National Hydrography Dataset Plus
~ All
Elevation Grid
Catchments
Hydrography
StationLocations from US Geological Survey National Water Information System
Water Quality Measurements Daily GW Periodic
Data Values from US Geological Survey National Water Information System
Station Locations must be selected on the map before data value download
National Land Cover Data 2001
_ Land Cover (_' Impervious |_J Canopy
1992 Land Cover
EPA STORET Water Quality
I | Stations
North American Land Data Assimilation System
B] Grid O Precipitation (available after grid selection on map)
Merge
Clip to Regit
Help
Cancel
Download
62
-------
102. When the following screen appears, click "OK".
Data Download
X
=P
|| Downloaded Layer: NWIS Daily Discharg
e Stations
OK
BASINS 4.1 - Manitowoc*]
File kS Watershed Delineation Models i4 Compute J'Launch •. 'Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
lifers * :: a ~ « ^ ^
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table
~ ® £ U i & ;< £> o S ab shp si* j
Pan | In | Out Extent Selected Previous Next Layer Select Deselect Measure Identify Label Mover New Insert Add Remove Copy Paste Merge Erase
(X)
Erase beneath
ir?-/-l
Legend
Layers Toolbox
c>iaie oounaanes
•V
n
BD Maior Roads
BD Ecoreqions (Level III)
mr
BD Land Use Index
~
BD State Soil
~
B0 Simplified Flowline
103. BASINS will download locations of USGS gage stations, and it will be displayed at the bottom of
the "Legend" on the left-hand side of the screen and on the map.
d unnamed - X: 609,443.516 Y: 2,402,685.124 Meters Lat: 44.392 Long: -88.321
B@ Simplified Catchment
m
~ 0 Area of Interest ~
EZ3
Bpl^/ Observed Data Stations
|BE1 NWIS Daily Discharge Stations • i ~
Preview Map 9 x
Map layers can be turned off, symbols for the gage stations can be changed, and labels can be added
to see the stations more clearly on the map.
63
-------
104. In the "Legend" panel, turn off the "Animals" and "Septic" map layer by clicking on the box at
the left to remove the check mark (V).
Legend ^ x
Toolbox
Layers
B0L' Observed Data Stations
BB NWIS Daily Discharge Stations
BBu Point Sources and Withdrawals
~ ~ Permit Compliance Svstern
00 NLDAS Grid Center
i
BE Output Points
~
eptic
~
nimals
~
~ 0 Point Sources
~
SIT Bacteria
~
~ 0 Reach File. V1
105. On the "Legend" panel, click on "Observed Data Stations" (including the "NWIS Daily Discharge
Stations" layer) and drag it to the top.
Legend ^ x
Layers
Toolbox
El 15! V-j Observed Data Stations
|0 0 NWIS Daily Discharge Stations
0 0 Point Sources and Withdrawals
0D
Permit Compliance System
~
00
NLDAS Grid Center
~
(±10
Weather Station Sites 2006
•
00
Animals
~
B0
Point Sources
~
00
Bacteria
~
00
Reach File. V1
—
ED
NAWQA Study Area Unit Boundanes
~
0D
Accountinq Unit Boundaries
00
Cataloqinq Unit Boundaries
~
00
Countv Names
N*>
0O
Countv Boundaries
~
0O
EPA Reqion Boundaries
~
00
State Boundaries
~
00
Major Roads
-
0O
Ecoreqions (Level llll
~
0D
Land Use Index
~
00
State Soil
~
0 0
Simplified Flowline
N$>
00
Simplified Catchment
n
00
Area of Interest
~
64
-------
106. Click the symbol at the right of the "N WIS Daily Discharge Stations" layer.
Legend ^ x
Toolbox
Layers
B0 & Observed Data Stations
gn i—i UDservea uaia axauons
|00 NWIS Daily Discharge Stations ~ ( • J
0 0 L5 Point Sources and Withdrawals
an
Permit Compliance System
~
00
NLDAS Grid Center
~
00
Weather Station Sites 2006
•
sn
Animals
~
as
Point Sources
~
sn
Bacteria
~
s0
Reach File. V1
•$>
—
0D
NAWQA Studv Area Unit Boundaries
-$>
~
0D
Accountina Unit Boundaries
00
Cataloqinq Unit Boundaries
<$>
~
0D
County Names
00
County Boundaries
~
00
EPA Reqion Boundaries
n
00
State Boundaries
n
00
Maior Roads
-
0D
Ecoreqions (Level III)
~
0D
Land Use Index
~
0D
State Soil
~
00
Simplified Flowline
00
Simplified Catchment
~
00
Area of Interest
~
107. The "Point style" window appears. Put "10" for "Size", click the circle in the "Symbols" tab, click
"Apply", then "Ok".
Point sty I el
Preview
Size
Rotation
Fore color
K0 1
Symbols | Characters ] Icons ] Options]
Point shape # Circle
Number of sides [l
Side ratio 0
¦ O ~ T a f -~*<-# F
Transparency
2551
0
Apply
Ok
Cancel
65
-------
108. Right-click on the name of the layer, then select "Label Setup".
Legend ^ x
Layers
Toolbox
00U Observed Data Stations
00 nwis r
BR ^ Point J
0D Permit
0 0 NLDAS
0 0 We at he
EH Animal;
01? Point S
0T Bacteri
0 0 Reach
0D NAWQj
0D Accour
0 0 Cataloc
~
Add Group
Add Layer
Remove Layer
Clear Layers
Zoom to Layer
Label Setui
Charts
View Metadata
% Shapefile categories
109. The following window appears. Double-click "site_no" under "Fields", and ensure "[site_no]"
appears under the "Expression" box. Click "Ok".
¦04085281
\V] Labels visible
10 ^ Font size
Transparency
255
0
Fields
cd
Clear
4 site_no
sT37fOfi_nm
site_tp_cd
dec_lat_va
dec_long_v
coord_acy_
dec_coord_
district_c
state_cd
county_cd
country_cd
NewLine
Example
[Area] + "ha" +
[Population]/! 000 + "thsnd."
Description
[Area] - the name of field
"ha" - string constant
Expression is correct
Apply
Ok
Cancel
66
-------
110. In the window below, select the appropriate position of the label, then click "Ok".
111. The following figure appears with larger symbols and codes of the USGS gage stations in the
Manitowoc River Basin.
" BASINS 4.1 - Manitowoc*!
H unnamed - X: 579,711.289 Y: 2,388,833.965 Meters Lat: 44.289 Long: -88.708
1:561809
File u•* Watershed Delineation i'' Models < * Compute . I Launch u.* Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
. * & a O La La in « * m i* IB
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table
* pi Sr> JJ r ,l if ci HI7 O T- shp s(i j ®
Pan [ In | Out Extent Selected Previous Next Layer Select Deselect Measure Identify Label Mover New Insert Add Remove Copy Paste Merge Erase Erase beneath
m- a-
Legend
Layers ] Toolbox]
0 EZi 'kJr Observed Data Stations
100 NW1S Daily Discharge Stations ~
SBlJ1 Point Sources and Withdrawals
SO Permit Compliance System ^ ~
00 NLDAS Grid Center ^ ~
0D Output Points ~
ED Septic ~
0D Animals ~
00 Point Sources ^ ~
0D Bacteria ^ *
00 Reach File. V1 •$> -
0D NAWQA Study Area Unit Boundarie
0D Accounting Unit Boundaries ^
00 Cataloqina Unit Boundaries ^ ~
0D County Names ^
0D County Boundaries ^ ~
0D EPA Reqion Boundaries Q
00 State Boundaries ^ D
Fin i^>
Preview Map
67
-------
In the figure, three gage stations in the Manitowoc River Basin have been highlighted with red boxes:
04085427 is located at the outlet (near the pour point) of the watershed, and 04085395 and
04085425 are within the watershed. Flow observations at the 04085427 gage station will be
downloaded in this example, first for the daily flow observations, then for the "instantaneous" flow
observations.
Daily Discharge Time Series for the USGS Gaging Station 04085427
112. To download discharge data at the 04085427 gage station,
a. Highlight the "NWIS Daily Discharge Stations" layer in the "Legend" panel (bottom, left-side
of screen).
. ^
b. On the tool bar, click , then click on each gage station on the map while holding the
Ctrl key down. The gage stations will be highlighted.
jfl BASINS 4.5 - HSPF-PEST*
File i... If Watershed Delineation i.. (Models .. 1 Compute ... Launch . '"Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
;y i *¦ « ib la la1 • fro n
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table Select Deselect Measure Identify Label Mover
J? J3 P ia , li_- ^ ?o sli -i^) Q • • IB O V
| Pan | In Out Extent Selected Previous Next Layer New Insert Add Remove Copy Paste Merge Erase Erase beneath Move Rotate Resize Move vertex I
>/ ft].
d vertex Remove vertex Cleanup Undo
Legend
¥
X
Layers Toolbox
~
>
BD Animals
•
BD Point Sources
~
BD Bacteria
BD Reach File, V1
BD NAWQAStudy Area Unit Boundaries
~
*
BD Accounting Unit Boundaries
BO Cataloging Unit Boundaries
[=~
BD County Names
BD County Boundaries
~
BD EPA Region Boundaries
~
BO State Boundaries
~
BD Major Roads
BD Ecoregions (Level III)
~
BD Land Use Index
~
BD State Soil
~
N>
B0 Simplified Flowfine
B0 Simplified Catchment
~
BD Area of Interest
*
B 0 Other
|B0 NWIS Daily Discharge Stations
•
u
Preview Map
¥
X
• 04085281
• 04085330
~ ~ • 0408543802
~~
~ 4 „• 0408543907
« ~~~~
J unnamed ~ X: 699,253505 Y: 2.360,922141 Meters Lat: 43.949 Long: -87.244
68
-------
113. Choose "File", then "Download Data" again, this time specifying download "Daily Discharge"
data values. Click "Download".
Download Data
Region to Download j Hydrologic Units
BASINS
~ Met Stations 0 GIRAS Land Use ~ NHD
n Met Data 0 Legacy STO RET 0 Census
~ DEM Grid
National Hydrography Dataset Plus
O All
0 Catchments
0 Elevation Grid
0 Hydrography
Station Locations from US Geological Survey National Water Information System
I I Discharge 0 Water Quality 0 Measurements 0 Daily GW 0 Periodic
Data Values from US Geological Survey National Water Information System
P71 Daly Discharge 0 Water Quality 0 Measurements 0 Daily GW 0 Periodic
I I Instantaneous Discharge
National Land Cover Data from National Map
I I 2011 Land Cover 0 2006 Land Cover 0 20D1 Land Cover 0 1992 Land Cover
0 2011 Impervious 0 2006 Impervious 0 2001 Impervious 0 2001 Canopy
EPA STORET Water Quality
1 I Stations
North American Land Data Assimilation System
I I Grid
Project Time Zone - UTCminus |0
n Clip to Region 0 Get Newest
Help
Cancel
Download
114. The window similar to the following appears. The daily flow observation time series file name
will already be identified, but you can pick a different name or folder location. Choose "Add data to
new WDM file". Click "Ok".
|j|| Daily Discharge Processing Options
rfter downloading Row data.
Add individual files {one per station) to project
(<§) Add data to new WDM file:
Add data to existing WDM file:
© Do not add data to project
CAUsereXgwhelanNjemTechnologiesXS D M P B\HS P F-P ESTViwis'^flow .wdm
Browse...
Browse...
Ok
115. When the download is complete, this message appears. Click "OK":
69
-------
116. When a screen similar to the following appears, click "OK".
117. The "Data Sources" window appears, indicating NWIS data have been added to the project.
Choose "file", then "Exit".
File Analysis Help
B-WDM
¦C:\U3ers'vgwhelan'l.ien'jTeehnologie3,,,SDMPB\HSPF-PEST_T',rnefl.metwdrri (S3)
C:\Usersvgwhelan\ieniTechnologie3\SDMPB\HSPF-PEST_T',nwis\flcw.wdn-i (1)
.:\Users\gwhdan'',iemTechr»logies\SDMPBl
Rle u"IWatershed Delineation 1. * Models t ^ Compute 1, ^ Launch 1. '• Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
m m b m * ¦ la la to » » % % ^ . SI' 0 1
New Open Save Print Settings Add Remove Clear Symbology Categories Query Properties Table Select Deselect Measure Identify Label Mover
70
-------
Instantaneous Discharge Data for USGS Gage Station 04085427
The USGS Instantaneous Data Archive (IDA) for Instantaneous Discharge data provides hourly and
sub-hourly discharge data at USGS gaging stations. As of June 23, 2017, access to USGS Instantaneous
Data Archive (IDA) for Instantaneous Discharge data is not available on the USGS web site, as
illustrated in the following screen capture.
V Q USGS Instantaneous Da" x % ^
0 1 © file.y//C:/Users/Keewook%20Kim/AppData/Local/Temp/IDA_Error.html ^ 1 Q Q O 5
i" Apps ~ Bookmarks 3 Personal Data Q Work |Q MHMH hi Ml- Q MIOIN M-21 3 amazon.com Online (JJ TorrentTVZIL ^ PowerSchool Q »
t!)USGS - science for a
changing world
USGS Home
Contact USGS
Search USGS
Instantaneous Data Archive - IDA
Update:
Starting in December 2016 and over the following seven months, discharge data from IDA are being migrated to the National Water Information Svstem Web Interface (NWISWebl.
This migration will occur one Water Science Center at a time (roughly by State). Once the transition is complete IDA will be discontinued. Please address any questions through the
"Questions and Feedback" link above.
Error
• RETRIEVE FROM DATE is a required field.
• RETRIEVE TO DATE is a required field.
Please go back, correct the information and resubmit the form.
Accessibility FOIA Privacy Policies and Notices
U.S. Department of the Interior 1 U.S. Geoloeical Survey
URL: http://ida.water.usgs.gov/ida/available_records_process.cfhi
Paee Contact Information: IDA Support Team or GS-W Helo IDA(®uses.sov
Last Modified: 11/21/2016
n the event that USGS IDA for Instantaneous Discharge data become available and the web service is
activated within the SDMPB, Appendix A describes how the user can access and retrieve the
instantaneous discharge data using the BASINS download data tools.
View Observed Data
119. Flow observation data must be exported to prepare files for flow-related parameter calibration
using the PEST inverse model. On the menu bar, select "Analysis>List".
Analysis Layer View Bookmarks Plug-iris Si-
Data Tree
rr
Watershed Characterization Reports
Seasonal Attributes
Graph
Reclassify Land Use
shp
Add
71
-------
120. The following "Select Data" window appears.
if Select Data
File Attributes Select Help
Select Attribute Values to Filter Available Data
Scenario
04030101
NLDAS
OBSERVED
FT-OBS
Matching Data (1,000+ of 5,546)
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
Selected Data (0)
Location
Date Range of Selected Data
All Common
Start none none
End none none
040S5427
1:102
1:202
1:302
1:402
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
~ Constituent
' AG WET
U AGW1
AGWO
AGW5
AIF.T
AinTiin
PFtEC
ATEM
WIND
SOLR
PEVT
DEWF
CLOU
WINDV
~
LU Subset, Split, or Fitter Selected Data
Ok
Cancel
121. To review the time steps associated with the time series, select "Attributes>Add". Repeat once.
t, Select Data
File
Attributes
Select Hel
Select
C^dd)
ter Ave
Scenar
Remove ~
COMPUTED
NLDAS
72
-------
122. Two additional attribute columns will be added in the "Select Data" window.
j|| Select Data
File Attributes
Select Help
Select .Attribute Values to Filter Available Data
(r-
T Location
j Constituent
AGENCY "| Clntvl
.
.
' I
04030101
04085427
*¦
AGWET
USGS True
NLOAS
1:102
J
AGWI
U
"Missing" ""Missing"
OBSERVED
1:202
AG WO
PT-OBS
1:302
AGWS
1:402
AIRT
I.CA1
a in-run
Matching Data (1 {XXk of 5,546)
NLDAS
X295Y153
PREC
-
NLDAS
X295Y153
ATEM
~
NLDAS
X295Y153
WIND
NLDAS
X295Y153
SOLR
NLDAS
X295Y153
PEVT
NLDAS
X295Y153
DEWP
NLDAS
X295Y153
CLOU
NLDAS
X295Y153
WINDV
-
Selected Data (0)
Date Range of Selected Data
All
Start none
End none
Common
none
none
H Subset, Split, or Filter Selected Data
Ok ] j Cancel
123. For the two additional attribute columns, select "time step" and "Time Unit".
interval
VI
Time Unit ~
Summary File
>
Summary File >
TGROUP
TGROUP
TMZONE
TMZONE
TSBYR
TSBYR
TSFILL
TSFILL
TSFORM
TSFORM
TSTYPE
TQT_V_DI=
Time Unit
Time Unit
UBC200
Units
Units
interval
interval
retrieved
time step
time step
Calculated Attributes:
Calculated Attributes:
1 Highl 00
IHighlOO
7Q10
7Q10
Coefficient of Variation
n
Coefficient ofVariation
r> x
73
-------
124. After being chosen, the data time step appears in "Matching Data". For example, in the figure
below, "OBSERVED" "PREC" (precipitation) at "X295Y153" has a "1" "Hour" time step.
(if Select Data
File Attributes Select Help
Select Attribute Values to Filter Available Data
~ | [ Location
~ | | Time Step
Scenario
~ Constituent
04030101
NLDAS
OBSERVED
PT-OBS
04085427
1:102
1:202
1:302
1:402
Matching Data (1.00Ck of 5.546)
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
Selected Data (0)
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
Date Range of Selected Data
All Common
Start none
End none
none
none
* AGWET
Q AGWl
AG WO
AGWS
AIRT
PREC
ATEM
WIND
SOLR
PEVT
DEWP
CLOU
WINDV
a
Hour
Day
Month
Hour
Hour
Hour
Hour
Hour
Hour
Hour
~
~ Subset. Split, or Rlter Selected Data
125. in the "Constituent" column, find "FLOW" for daily flows by clicking on "FLOW", in the
"Matching Data" section, the "Time Unit" for "FLOW" is daily ("Day"). "Time Step" and "Time Unit"
can be easily determined by opening tabulated data.
Select Data —-—i
1 File Attributes
Select Help
aeieci .^iinDuie values 10 niter nvaiiaDie uaia
Scenario
~ | Location
~ ] Constituent
I I t: l l_i
.
iep ~ i nme unn -
04030101
04085427
- DIAZINON
a
1 Hour
NLDAS
1:102
LI DQAL
Day
OBSERVED
1:202
¦flow
P
Month
PT-OBS
Matching Data (4 of 5
1:302
1:402
,546)
GAGE
GWVS
a
04030101
RCH9
FLOW
Day
PT-OBS
RCH1
FLOW
1 Day
PT-OBS
RCH1
FLOW
1 Day
OBSERVED
04085427
FLOW
1 Day
Selected Data (0)
Date Range of Selected Data
All
1 Start none
Common
none
[H Subset, Split, or Filter Selected Data
End none
none
I Ok I I
Cancel
74
-------
126. To check the "Time Unit", select "04085427" in "Matching Data". Ensure that "04085427"
appears in "Selected Data" section. This ensures that data with their own time step will appear.
Click "Ok".
j|f Select Data
File Attributes Select Help
Select Attribute Values to Filter Available Data
Scenario
Location
04030101
NLDAS
OBSERVED
FT-OBS
Matching Data {4 of 5.546)
040301D1 RCH9
PT-QBS RCH1
PT-OBS RCH1
OBSERVED
04085427
Selected Data (1 of 5546)
OBSERVED 04085427
Date Range of Selected Data
All Common
Start 1972/07/26 1972/07/26
End 2017/06/23 2017/06/23
Constituent
DIAZINON
- DQAL
GAGE
GWVS
FLOW
FLOW
FLOW
FLOW
~ Time Step
.~
1
Time Unit
Hour
Day
Month
Day
Day
Day
Day
Subset. Split, or Filter Selected Data
Ok
Cancel
75
-------
127. The following window appears. The "Time Unit" of the data can be easily identified as daily
increments. Close the "Timeseries List" window.
File Edit View Analysis
Help
History 1
from flow.wdm
¦A
Constituent
FLOW
u
Id
1
Mi n
7
Max
8.000
Mean
324.31
07/26/1972 24:00
69
07/27/1972 24:00
65
07/28/197224:00
57
07/29/1972 24:00
5S
07/30/1972 24:00
57
07/31/1972 24:00
54
03/01/1972 24:00
4B
08/02/197224:00
66
08/03/1972 24:00
64
03/04/197224:00
63
08/05/1972 24:00
60
OS/06/1972 24:00
70
08/07/1972 24:00
84
nn in n n rtrr*\ j n.n.
n n.t~
In this example, HSPF input flow parameters will be calibrated with daily flow observations. If the user
would like to use 15-minute or hourly flow observation data for the HSPF flow parameter calibration,
a similar procedure could be used for these data sets, using the observation data download described
in Appendix A.
76
-------
Export Flow Data as a Text File for Parameter Calibration
Parameter calibration will be performed using daily flow observations. This section describes the
procedure used in preparing a text (*.txt) input file of observed flow for use in the calibration of HSPF
flow-related parameters by PEST. Because calibration is iterative and over writes existing files,
files associated with the initial HSPF simulation must be maintained in a different folder location. The
time period associated with this calibration is from January 1, 2000 (2000/01/01) to December 31, 2012
(2012/12/31), respectively.
128. To export flow observation data, open the "Select Data" window again (from "analysis" and
"List" from the BASINS menu icons). In the "Constituent" column, choose "FLOW". In "Matching
Data", select "04085427" which is the gaging station that is nearest to the outlet of the Manitowoc
River Basin and will be used for HSPF flow parameter calibration. Ensure that "04085427" appears
in "Selected Data".
j|| Select Data
0
File Attributes Select Help
Select Attribute Values to Filter Available Data
Scenario
* Location
04030101
NLDAS
OBSERVED
F'T-OBS
04DB5427
1:102
1:202
1:302
1:402
Matching Data (4 of 5,546)
04030101 RCH9
PT-QBS RCH1
PT-QBS RCH1
OBSERVED
04085427
Selected Data (1 of 5546)
OBSERVED 040S5427
Date Range of Selected Data
All Common
Start 1972/07/26 1972/07/26
End 2017/06/23 2017/06/23
Constituent
DEWTMP
DIAZINON
DQAL
GAGE
FLOW
FLOW
FLOW
FLOW
Time Unit
* Hour
~ Da>''
Month
Day
Day
Day
Day
Time Step
1
J Subset, Split, or Filter Selected Data
Ok
Cancel
77
-------
Although we are going to perform HSPF modeling from 2000 to 2012, the "Date Range of Selected
Data" section indicates the daily flow observations are available from 1972/07/26 to 2017/06/23. This
will affect to model parameter calibration and validation period; therefore, the start and end dates
need to be changed to 2000/01/01 and 2012/12/31, respectively.
129. Click the "Subset, Split, or Filter Selected Data" box.
Select Data
File Attributes Select Help
Select .Attribute Values to Filter Available Data
Scenario
Location
D4D301D1
NLDAS
OBSERVED
PT-DBS
04085427
1:102
1:202
1:302
1:402
i.cm
Matching Data (4 of 5,546)
04030101 RCH9
PT-OBS RCH1
PT-OBS RCH1
Selected Data (1 of 5546)
OBSERVED 040S5427
Date Range of Selected Data
All Common
Start 1972/07/26 1972/07/26
End 2017/06/23 2017/06/23
Constituent
~ Time Unit
DEWTMP
DIAZINQN
DQAL
GAGE
* ft /r-
FLOW
FLOW
FLOW
FLOW
* Hour
J Day
Month
Day
Day
Day
Day
~ Time Step
1
OBSERVED
04085427
FLOW
Day
1
Ok
Cancel
130. The "Filter Data" screen appears. Under the "Subset By Date" tab, change the "Start" and "End"
dates to 2000/01/01 and 2012/12/31, respectively. Click "Ok".
~S1 Filter Data
[Reasons ] Filter By Value j Change Time Step | Timeseries Math
All
Start 1972/07/26 1972/07/26
End 2017/06/23 2017/06/23
j Apply month/day range to each year
1972/07/26
2017/06/23
n-J Filter Data
Subset By Date Seasons Filter By Value Change Time Step Timeseries Math
Start 1972/07/26 1972/07/26
End 2017/06/23 2017/06/23
[PI Apply month/day range to each year
2000/01/01
78
-------
131. The following "Timeseries List" window appears.
' 1
4 1
JEU
£
File Edit View Analysis
Help
History 1
from flow.wdm
Constituent
FLOW
Id
1
Min
9.99
Max
4.7G0
Mean
294.3G
01/01/200024:00
33
01/02/200024:00
35
01/03/2000 24:00
36
01/04/2000 24:00
36
01/05/2000 24:00
37
01/05/200024:00
35
01/07/200024:00
34
01/OB/2000 24:00
33
01/09/2000 24:00
31
01/10/2000 24:00
32
01/11/2000 24:00
33
01/12/200024:00
34
01/13/2000 24:00
33
01/14/2000 24:00
32
01/15/200024:00
32
01/1G,'2000 24:00
31
01/17/2000 24:00
31
Formats associated with the dates and values may need to be checked and changed, if necessary. The
dates need to have a format of yyyy/mm/dd. The values must not contain commas, so they must be
removed from the numbers, if they exist (e.g., change 1,240 to 1240).
79
-------
132. Select "View", then "Data and Value Formats...".
History 1
Constituent
Min
Max
Mean
File Edit | View ] Analysis Help
01/01/2000 2
01/02/2000 2
01/03/2000 24OT-*
01/04/200024:00
01/05/200024:00
01/06/200024:00
01/07/200024:00
01/0^200024:00
01/09/200024:00
01/1(1200024:00
01/11/2000 24:00
01/12/2000 24:00
01/13/200024:00
01/14/2000 24:00
01/15/200D 24:00
01/16/2000 24:00
01/17/2000 24:00
01/18,200024:00
01/19/200024:00
Attribute Rows
Attribute Columns
Size Columns To Contents
Time Series Values
Value Attributes
Filter NoData
I Date and Value Formats...
36
37
35
34
33
31
32
33
34
33
32
32
31
31
31
31
133. The "Formats" window appears as follows.
a. If a comma (,) appears in the "Standard Format" remove it. In this case, no comma appears.
b. Choose "Year Month Day", if not chosen.
c. Click "Apply", then "Ok".
(If Date and Value Formats
Date Format
Value Format
o Year Month
Day|
Standard Format
Month Day Year
© Day Month Year
Days starting 1900
[yl Years O Two Digit Years
W\ Months n Month Names
[V] Days
O Hours
Ft/1 Minutes
IH Seconds
0 Midnight as 24:00
Date Separator
Time Separator
Help
Cancel
Exponent Format #.#e#
Significant Digits
Maximum Length
If Value Cannot Fit
Title
5
10
#
Apply
Ok
80
-------
134. The following screen with corrected formats for dates numbers appears.
B I
File Edit View
Analysis
Help
History 1 [
frorr, flow.wdm | *
Constituent
FLOW
Id
1 i
Min [
9.99 |
Max
4,760 |
a Mean |
294.36 | .
2000101/01 24:00
33
2000/01/0224:00
35
2000/01/03 24:00
36
2000/01/0424:00
36
2000/01/0524:00
37
2000/01/0624:00
35
2000/01/0724:00
34
2000/01/08 24:00
33
12000/01/09 24:00
31
2000/01710 24:00
32
2000/01/11 24:00
33
2000/01/12 24:00
34
2000/01/13 24:00
33
12000/01/1424:00
32
2000/01/1524:00
32
2000/01/16 24:00
31
2000/01/1724:00
31
2000/01/18 24: DO
12000/01/1924:00
31
31
2000/01/2024:00
30
2000/01/21 24:00
30
2000/01/22 24:00
30
135. To export the data for use by other models such as PEST, select "File>Save Grid As Text".
Timp^) Ctrl+S
1990/03/15 02:00 1455
1990/03/15 03 fin 1435
81
-------
136. In the window below, file name and the location can be defined. Here, the time series will be
stored as
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\NWIS\04030101_obs_daily.txt". Once
the file name and folder path are defined, click "Save".
File Edit View Tools Help
Organize ~
J) °P
en
Share with ~
Print
!= ' SI
HSPF-PEST_1
EPAWaters
. HSPF
HSPF-PEST
hucl2
LocalData
met
NHDPIus
NLCD
NWIS
pes
Name
04030101_obs_daily.txt
.E1, flow.wdm
NWIS_Stations_discharge,dbf
| | NWIS_Stations_discharge.lbl
NWIS_Stations_discharge.mwsr
NWIS_Stations_discharge,prj
N WIS_Stati o n s_d i sch a r g e, rd b
I "| NWIS_Stations_discharge.rdb.html
iNWIS Stations discharqe.shp
jtml
rrr
04030101_obs_daily.txt Date modified; 7/10/2017 10:17 AM
Text Document Size: 102 KB
1 item selected
Computer
137. Close the "Timeseries List" window, using the upper right-hand corner "x".
82
-------
PREPARING PEST INPUT FILES FOR HSPF FLOW PARAMATER CALIBRATION
Parameter calibration will be performed using daily flow observations. This section describes the
procedure to prepare PEST input files for calibration of HSPF flow-related parameters. Because
calibration is iterative and writes over existing files, files associated with the initial HSPF simulation that
are over-written must be saved in a different location.
138. Create a new folder ("...\Flow\Daily\") in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\".
File Edit ;/iew Tools Help
Organize ~ rJ Open Include in library * » |EE ~ ©'
!> jj
PEST14
** Name
> JH
J
SARATimeSeriesUtility
SDMPB
Daily
t> j
bin
> j
etc
> j
HSPF-PEST
J
HSPF-PESTJL
N
>
EPAWaters
HSPF
J
HSPF-PEST
d Flow
Daily
Microbe
- * hi j
Daily Date modified: 7/16/2017 3:05 PM
File folder
1 item selected j Computer
83
-------
139. Copy the meteorological and flow time series data, and HSPF input files to new folders.
a. Copy three HSPF input files (04030101.ua, 04030101.wdm, and met.wdm) from
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF"
to the new "...\Flow\Daily" folder:
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily"
b. Copy "04030101_obs_daily.txt" from
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\NWIS"
to the new "...\Flow\Daily" folder:
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily", and
change the name of the file to "04030101_obs.txt".
c. Copy "HSPF_PEST_flow.exe" and "lnput_flow.in" from
"C:\Users\gwhelan\iemTechnologies\SDMPB\bin\Data\HSPF-PEST" to
• "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST"
• "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily".
id*
loots tHP
Organize »
3 °P«n
Share with » Burn
New folder
85
* 3 •
EPAWat eo
*
Name
Date modified
Type
J. HSPF
HSPF-P£ST
i. Flow
« 04030101 .uci
f 04030101. wdm
7/1 J/201710-33 AM
7/11/20X710--32 AM
UCI File
WDM File
04030101_obs.txt
7/10/201710J7 AM
Text Document
Oaily
HSPf_PEST_flow.exe
2/27/2017 5:20 PM
Application
J« hud2
localData
J. met
w lnput.flow.in
7/10/201711-46 AM
IN File
-------
The executable "HSPF_PEST_flow.exe" prepares files necessary for HSPF flow parameter calibration with
PEST.
A. Three PEST input files
a. PEST control file (.pst): PEST parameters, model parameters metadata (names, initial
values, ranges, etc.), parameter groups, observed flow data, and path of model
executables.
b. PEST template file (.tpl): Structure of the model input file and location of where the
calibrating parameter values are to be placed.
c. PEST instruction file (.ins): How PEST will read the model output file.
B. Two batch files
a. "runHSPF.bat": Executes HSPF (i.e., WinHSPFIt.exe)
b. "runPEST.bat": Executes HSPF parameter calibration with PEST
C. Flow observation time series file: Flow observation date with missing values as "-9999". This file is
not used for parameter calibration.
"lnput_flow.in", the default input file used with the "HSPF_PEST_flow.exe", contains details for preparing
PEST input files: "HSPF_PEST_flow.exe" and "lnput_flow.in" which can be found in Appendix B.
"lnput_flow.in" defines
A. Folder paths of HSPF (i.e., WinHSPFIt.exe), PEST (i.e., pest.exe) and a working folder where HSPF
input files, generated by SDMPB, are located. In this example, the folder path for the daily
calibration is
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily"
B. Calibration parameter names and ranges for each land use group.
C. Land use groups that have different parameter values.
D. Number of years for model warm-up.
As the default, "HSPF_PEST_flow.exe" and "lnput_flow.in" are located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\bin\Data\HSPF-PEST", created by SDMPB, and copied to
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST". These files can be located in any
folder, but both must be in the same folder. In this example for parameter calibration with daily flow
observations, "HSPF_PEST_flow.exe" and "lnput_flow.in", respectively, must be located in working folder
(e.g., "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily").
The working folder paths in "lnput_flow.in" must be updated to reflect the locations of the 1) batch
version of HSPF (i.e., WlnHSPFLt.exe), 2) working folder, and 3) inverse model PEST. This information is
captured in the first three lines of the "lnput_flow.in" file, as discussed in Appendix B. The inverse model,
PEST, estimates specific HSPF input parameters to minimize differences between observed and simulated
results (flows and microbial densities). When automating the calibration process, a non-Windows-based
version of HSPF (i.e., WinHSPFLt.exe) is required, one which allows batch runs with no user interaction.
Because different organizations constructed software builds for BASINS and SDMPB installation, the
current software installation process installs WinHSPFLt.exe in two different locations:
• C:\BASINS45\models\HSPF\bin\ and
• <...\SDMPB\bin\>
as both include WinHSPFLt.exe; hence, there is the possibility that two different versions of the software
might exist. To ensure consistency, the version ofWinHSPFLt.exe contained in the SDMPB build (i.e.,
<...\SDMPB\bin\) will be the one used in the calibration process.
85
-------
140. Open "lnput_flow.in" in each folder with a text editor.
File Edit Format
View Help
c:\SDMPB\bin\
*-
c:\Temp\SDMProject\Manitowoc\nspF-PEST\Flow\Daily\
c:\PEST\
1
1
9
water/wetlands
urban
Barren or Mining
Forest
upland shrub Land
Agriculture -
cropl a
Grass Land
Agriculture -
Pastur
Transiti onal
KMELT
0.0000
0.2000
LZSN
2.0000
15. 0000
INFILT
0. 001
0. 5000
KVAFtY
£
0.0000
5.0000
AGWRC
0.8500
0.9990
DEEPFR
0. 0000
0. 5000
BASETP
0.0000
0.2000
AGWETP
0.0000
0. 2000
CEPSC
0. 01
0.4000
UZSN
0.0500
2.0000
NSUR
0. 0500
0.5000
INTFW
1.0000
10.0000
IRC
0.3000
0. 8500
LZETP
0.1000
0.9000
—
-
~
~
The following lines in "lnput_flow.in" may need to be updated. Ensure that these lines are correct.
• Line 1 identifies the path of the folder location of WinHSPFLt.exe.
• Line 2 identifies the path of the working folder here input UCI file, WDM files, and a flow
observation file are located, and output files of "HSPF_PE5T_flow.exe" will be generated.
• Line 3 identifies the path of the folder location of PEST.exe.
• Line 4 identifies the number of years for model warm-up, from start of the simulation as it
appeared in the input UCI file
Refer to Appendix B for additional information on modifying the "!nput_flow.in" file. Ensure that
the name of the folder locations end with a backslash (\) for the first three lines.
The time period associated with this calibration is from January 1, 2000 (2000/01/01) to December
31, 2012 (2012/12/31), respectively. For this example, parameter calibration with daily observations
will use the first seven years (i.e., 2000-2006) for model warm up and the final five years for
calibration (i.e., 2007-2012). As such, the fourth line will need to contain a "7".
86
-------
141. For this example, change the
• first three lines to the appropriate folder locations.
• fourth line from a "1" to a "7".
• Save and exit.
File Edit Format View Help
I: \users\gwhel an\i emTechnol ogi es\SDMPB\bi n\
I:\users\gwhelan\iemTechnologi es\SDMPB\HSPF-PEST_l\HSPF-PEST\FlovA Dai 1y
::\pest\
water/wetlands
urban
Barren or Mining
Forest
Upland shrub Land
Agriculture - cropla
Grass Land
Agriculture - Pastur
Transiti onal
KMELT
0.0000
LZSN
2.0000
INFILT
0. 001
KVARY
0.0000
AGWRC
0.8500
DEEPFR
0.0000
BASETP
0.0000
AGWETP
0.0000
CEPSC
0. 01
UZSN
0.0500
NSUR
0.0500
INTFW
1.0000
IRC
0.3000
LZETP
0.1000
0.2000
15.0000
0.5000
5.0000
0.9990
0.5000
0.2000
0.2000
0.4000
2.0000
0.5000
10.0000
0.8500
0.9000
Prepare HSPF for the Flow Calibration Period
HSPF input files were prepared with MET data from 2000 to 2012 which needs to be divided into two
sub-periods: one for parameter calibration and one for validation. In this example, parameter calibration
with daily flow observations will be performed for 2007 to 2012, with first seven years as model warm-
up.
87
-------
142. Open WinHSPF by double-clicking (left) on the icon to execute WinHSPF3.0. If the icon cannot be
found on the Desktop screen, locate the executables on the hard drive (WinHSPF.exe), typically in
<...\BASINS45\models\WinHSPF30\bin\>.
1
o.
WinHSPF3.0
143. The following WinHSPF window appears.
3 Hydroiogical SimuiatioM>rogra>T^^rtraMHSP^fl
File Edit Functions Help ~l^tl I 0 iia y* 1 3 ~ to
_ ~ X
144. Select "Fi!e>Open".
Si Hydroiogical Simulation Program - Fortran (F
File
Edit Functions Help ~ _? it
j Close
j Save
lj Save As...
¦ Exit
1 1
88
-------
145. The following window appears. Browse to
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily\04030101.uci", then
click "Open".
Organize » New folder
EPAWaters
j. HSPF
HSPF-PEST
Flow
Daily
j. hud.2
LocalData
met
NHDPIus
NLCD
NWIS
pes
I- *¦ si
Name
Date rt
0 04030101.uci
7/13/2
04030101.uci Date modified: 7/13/2017 10:33 AM
UCI File Size: 106 KB
Date created: 7/10/2017 10:31 AM
Filename: 04030101.uci
t UCI files C.uci)
Open
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146. The HSPF project workflow for the Manitowoc River Basin appears.
Hydrologicai Simulation Progiam - Fortran (HSPF): OaOgQlOLtiq]
File Edit Functions Help L3 f I 0 i
¦ i a " • -s M
Upland Shrub Land
Agriculture - Cropls
Agriculture - Pastur
I Reaches
I Implnd (Acres)
I Perlnd (Acres)
I Total (Acres)
89
-------
147. To change the simulation period to reflect the calibration period (2007-2012), select
"Edit>GLOBAL".
wS Hydrological Simulation Program - Fortran (b
File
Edit
Fi igrtinn*; Help
~ ^ 6
CD
O
(global)
w ¦
"O
C
CD
otFTSequence
FTABLES
EXT SOURCES
(/> ta
c
1PM ATC
148. The "Global Block" window appears. Check to ensure that the simulation time goes January 1,
2000 (2000/01/01) to December 31, 2012 (2012/12/31). Click "Apply", then "Ok".
Run I nformation:
Span
UCI Created by WinHSPF for 04030101
Year Mo
Start: pOOO [1
Day Hr
h F"
Min
OK
¥
End: [2012 Jl2 [31 (24 |o~
Cancel Apply Help
Output Level:
General: fT"
Actions:
Special j^-
~ | Run Flag: [Run
T1 Units: (English
149. In the WinHSPF Ul, save the changes by clicking or "File>Save". Close WinHSPF.
150. "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily\04030101.uci"
does not need to be modified.
Execute HSPF for the Flow Calibration Period
151. In "C:\Users\gwhelan\ierriTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily", execute
"HSPF_PEST_flow.exe". The following command window will appear.
90
-------
152. In this example, we calibrate parameters at the outlet of the watershed. From the figure in the
Step 124, one can easily indicate the watershed outlet is Subwatershed 9 (i.e., RCHRES 9). Put "9"
in the command window and press ENTER. When the command window appears (shown below),
press ENTER to close it. The command window indicates simulation and calibration periods.
153. Once "HSPF_PEST_flow.exe" is executed, the three PEST input files, two batch files, and a flow
observation time series file will appear in the folder.
Organize ~ Q Open
Share with ~
Burn
New folder
12 - E0 ®
EPAWaters
iaj HSPF
. HSPF-PEST
Flow
Daily
hucl2
Local Data
Jn met
NHDPIus
JJ NLCD
J4 NWIS
pes
. UCI Modified Files
. Pour_Point
SDMPB Applications&Versions
Shape Files
i>' inc
Jii lib
Ji Links
MaxStat Lite
MicrobialPropertyDB
HSPF_PEST_flow.exe Date modified:
Application Size
Name
iff, 04030101_echo.out
~ 04030101_flow.ins
ij 04030101_flow.pst
jj 04030101_flow.tpl
iff, 04030101_obs.out
1^1 runHSPF.bat
f^1 runPEST.bat
[ft, 04030101. uci
iff ERROR.FIL
Lj HSPF.log
gj 04030101. ech
Q 04030101. hbn
[IT 04030101. out
jffj 04030101 .wdm
|3l Input_flow.in
|j 04030101_obs.txt
ff met.wdm
I lil HSPF_PEST_flow.exe
2/27/2017 5:20 PM
865 KB
1 item selected
j Computer
Now PEST input files for HSPF flow parameter calibration process have been prepared for daily flows.
91
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CALIBRATING HSPF FLOW PARAMETERS WITH PEST
"runPEST.bat" is a batch file that executes calibration for HSPF flow input parameters located in the
following folder (for this example):
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily".
154. Execute "runPEST.bat" in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily".
C:\Temp\SDMProj ect\Manitowoc\HSPF"PEST\Flow\Hourly>"C:\PEST\pest.exe" "04030101_
flow.pst"
PEST Uersion 13.3. Watermark Numerical Computing.
PEST is running in parameter estimation mode.
PEST run record: case 04030101_flow
(See file 04030101_flow.rec for full details.)
Model command line:
runHSPF.bat
Running model
Running model 1 time....
C:\Temp\SDMProject\Manitowoc\HSPF-PEST\Flow\Hourly>"C:\Basins41\models\HSPF\bin\
WinHSPFlt.exe" C:\Temp\SDMProj ect\Manitouoc\HSPF-PEST\Flow\Hourly\04030101 _flow.
During parameter calibration, a command window will show calibration progress as it processes, and
the HSPF monitoring window will appear and disappear multiple times, illustrated in the following
figure.
155. HSPF flow parameter calibrations with PEST will conclude when the command window
disappears.
92
-------
VIEWING OUTPUT FILES OF THE FLOW CALIBRATION RESULTS
View PEST Output Files of Flow Calibration Results with a Text Editor
The parameter calibration results are recorded in the ".rec" file In this example, "04030101_flow.rec" in
"C:\Users\gwhelan\iemTechnolagies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily" contains parameter
calibrations with daily flow data.
156. To view results of daily flow calibrations, open "04030101_flow.rec", located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily\" with a text editor.
File Edit View Tools Help
Organize ~
2 op
en
¦
HSPF-PEST_1
EPAWaters
HSPF
HSPF-PEST
Flow
Daily
Microbe
hucl2
LocalData
met
NHDPIus
NLCD
NWIS
pes
Share with » Burn
Name
Input_flow,in
Flows.png
IT ERROR.RL
Lj 04030101_flow.log
04030101 flow.rec
4
04030101_flow.res
~ 04030101_flow,rst
~ 04030101_flow,sen
04030101_flow.seo
£ 04030101.wdm
@ 04030101_flow.ech
i_j_04030101 flow.p93
m I
0403010l_flow.rec Date modified: 7/14/2017 4:25 PM
REC File
Size: 413 KB
m
1 item selected
Computer
93
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157. Daily results are presented in the figure below In the example, daily flow parameter calibration
results are summarized in "OPTIMISATION RESULTS" which contains calibrated parameter values
(under "Estimated value") and their confidence limits, followed by iterative comparisons of flow
calculations and observations (see "Observations >"). For additional insight on relationships
between calibration parameters and environmental factors, Appendix C provides heuristic
relationships between land use types and various calibration parameters.
file Edit Format View Help
OPTIMISATION RESULTS
at
arameters
parameter
Estimated
95% percent
confidence limits
val ue
1ower 1i mi t
upper limit
kmeltl
0.200000
0.171671
0.228329
1 zsnl
6.25001
3.81206
8.68795
i nfiltl
0.180450
8. 087438E-02
0. 280025
kvaryl
2.21814
1.53680
2.89948
agwrcl
0.992329
0.990307
0.994350
deepfrl
5.533800E-04
-0.154259
0.155366
basetpl
3.603869E-02
1.102262E-02
6.105476E-02
agwetpl
0.133185
-0.327751
0.594122
cepscl
0.171933
9.780593E-02
0.246061
uzsnl
0. 850273
0.458130
1.24242
nsurl
0.273034
1.920955E-03
0.544148
i ntfwl
5.43476
-52.8031
63.6726
i rcl
0.673000
0.580706
0.765293
^1 zetpl
0.404 542
0.362726
0.446358 i
Note: confidence limits provide only an indication of parameter uncertainty.
They rely on a linearity assumption which may not extend as far in
parameter space as the confidence limits themselves - see pest manual.
See file 04030101_f1ow.sen for parameter sensitivities.
~
observations —
>
observati on
Measured
cal cul ated
Resi dual
wei ght
Group
val ue
val ue
obs_l
698.000
544.929
153.071
1. 000
obs
obs_2
676.000
517.736
158. 264
1. 000
obs
obs_3
649.000
468.664
180.336
1. 000
obs
obs_4
634.000
462.105
171.895
1. 000
obs
obs_5
611.000
495. 753
115. 247
1. 000
obs
obs_6
586.000
462. 543
123.457
1. 000
obs
obs_7
556.000
431.174
124.826
1. 000
obs
obs_8
524.000
409. 333
114.667
1. 000
obs
obs_9
478.000
384.002
93. 9980
1. 000
obs
obs_10
270.000
365.241
-95.2408
1. 000
obs j
94
-------
158. Statistics between calculations and observations are listed in "Objective Function >" and
"Correlation coefficient —>", as illustrated below. The sum of squared weighted residuals is a
measure of the discrepancy between the data and an estimation model The correlation coefficient
(V) is a statistical measure of the degree in the change of one parameter because of change in
another. When done, close the file.
04030101_flow.nec - Notepad
File Edit Format View Help
obs_2182
obs_2183
obs_2184
obs_21S5
obs_2186
obs_2187
obs_2188
obs_2189
obs_2190
obs_2191
obs_2192
133.000
170.000
150. 000
139.000
132.000
130.000
133.000
129.000
123.000
118.000
124.000
245. 232
223.739
202.358
187.191
176.284
167. 943
161.792
160.793
166.421
161.750
154.086
-112.232
-53.7391
-52.3582
-48.1913
-44.2840
-37.9429
-28.7920
-31.7933
-43.4210
-43. 7502
-30.0859
1. 000
1. 000
1. 000
1. 000
1. 000
1. 000
1. 000
1. 000
1. 000
1. 000
1. 000
obs
obs
obs
obs
obs
obs
obs
obs
obs
obs
obs
See file 04030101_f 1 ow. res for more details of residuals in graph-ready format,
see file 04030101_f 1 ow. seo for composite observation sensitivities.
objective function >
Sum of squared weighted residuals (ie phi)
1.5852E+08
Correlation Coefficient >
Correlation coefficient
0.85832
Analysis of residuals >
All residuals:-
Number of residuals with non-zero weight
Mean value of non-zero weighted residuals
Maximum weighted residual [observation "obs_72"]
Minimum weighted residual [observation "obs_466"]
Standard variance of weighted residuals
Standard error of weighted residuals
2192
15. 53
1897.
-1832.
7. 2784E+04
269. 8
*
Note: the above variance was obtained by dividing the objective
function by the number of system degrees of freedom (ie. number of
observations with non-zero weight plus number of prior information
articles with non-zero weight minus the number of adjustable parameters.)
If the degrees of freedom is negative the divisor becomes
the number of observations with non-zero weight plus the number of
prior information items with non-zero weight.
95
-------
159. The HSPF UCI file written by PEST ("04030101_flow.uci") contains parameters calibrated by
PEST, which represents the final HSPF simulation associated with flow calibration. Daily calibrated
flow results in "04030101_flow.uci" are located, respectively, in the following folders:
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily".
File
:dit View lools Help
Organize Edit ~ Share with Burn New folder |EE * Qi] (j©'
EPAWaters
* Name
A
J. HSPF
| Inputflow.in
HSPF-PEST
B HSPF_PEST_flow.exe
_
Flow
J HSPF.log
Daily
II ERROR. HL
. hucl2
_ 04030101_obs.txt
LocalData
[sf| 04030101_obs.out
met
jaf 04030101_f 1 ow. u ci
NHDPIus
_ 04030101_flow.tpl
j. NLCD
04030101_flow.seo
NWIS
[j 04030101_flow.sen
J- PCE
" * | iir _j| >
04030101_flow.uci Date modified: 7/14/2017 4:25 PM
UCI File Size: 119 KB
1 item selected
_ j Computer
160. Open "04030101_flow.uci" in "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-
PEST\Flow\Daily" with any text editor, and go to the "SNOW-PARM1" section, where the calibrated
parameter value of "KMELT" can be found.
v 04030101_flow.uci - WordPad
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•Hi'
SNOW-PARMl
*** < PLS>
101
102
103
104
105
106
107
ioa
201
202
203
LAT
degrees
44.09
44.09
44.11
44.1
44.09
44 .09
44.09
44.08
44.05
44.04
44.04
MEXEV
(ft)
aee
902
922
925
875
900
896
877
846
870
936
SHADE
0.3
0.3
0.3
0.3
0.3
0.3
0.3
0.3
0.3
0.3
0.3
SNOWCF
1.2
1.2
1.2
1.2
1.2
1.2
1.2
1.2
1.2
1.2
1.2
COVXND
(in)
10.
10.
10.
10.
10.
10.
10.
10.
10.
10.
10.
(in/ d. F)
,20000000
.20000000
,20000000
.20000000
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32.
32.
32.
32.
32.
32.
32.
32.
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32.
32.
lOOQt
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96
-------
161. In "PWAT-PARM2" section, calibrated parameter values of "LZSN", "INFILT", "KVARY", and
"AGWRC" can be found.
ou Courier New
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T A A
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PWAT-PARM2
df W ilr
101
102
103
104
105
106
107
108
201
202
203
204
205
206
207
208
301
302
304
PI»S>
- x
FOREST
0.
0.
0.
1.
1.
0.
1.
0.
0.
0.
0.
1.
1.
0.
1.
0.
0.
0.
1.
1_
LZSN
(in)
.2500050
.2500050
.2500050
.2500050
.2500050
.2500050
,2500050
.2500050
,2500050
,2500050
,2500050
,2500050
,2500050
,2500050
,2500050
,2500050
.2500050
,2500050
,2500050
INFIIT
(in/hr)
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
.18044987
1fl»44Qfl7
LSUR
(ft)
500
500
500
500
500
500
500
500
500
500
500
500
500
500
500
500
500
500
500
^nn
S1SUR,
0.000151
0.000151
0.000151
0.000151
0.000151
0.000151
0.000151
0.000151
0.000309
0.000309
0.000309
0.000309
0.000309
0.000309
0.000309
0.000309
0.000146
0.000146
0.000146
n nnnmc
KVARY
(1/in)
.2181366
,2181366
,2181366
,2181366
,2181366
,2181366
,2181366
.2181366
.2181366
,2181366
,2181366
,2181366
,2181366
,2181366
,2181366
,2181366
,2131366
.2181366
,2181366
91 ftl uc
(1/day)
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
. 99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
.99232890
~
©
97
-------
162. In the "PWAT-PARM3" section, calibrated parameter values of "DEEPFR", "BASETP", and
"AGWETP" can be found. Note that "AGWETP" was only calibrated for "Water/Wetlands", and the
value was fixed as "0" for other land uses, (EPA, 2000).
PWAT-PARM3
'* < PLS>
PETMAX
PETMIN
INFEXP
INFIID
^^DEEPFR
BASETP
AGWET^V
1 * x - X
(deg F)
(deg F)
(
1
101
40.
35.
2.
2.
5 .5338E-4
.03603869
.13318532
102
40,
35.
2.
2.
5.5338E-4
.03603869
0.
103
40.
35.
2.
2.
5.5338E-4
.03603869
0.
104
40.
35.
2.
2.
5.5338E-4
.03603869
0.
105
40.
35.
2.
2.
5.5338E-4
.03603869
0.
106
40.
35.
2.
2.
5.5338E-4
.03603869
0.
107
40.
35.
2.
2.
5.5338E-4
.03603869
0.
108
40.
35.
2.
2.
5.5338E-4
.03603869
0.
201
40.
35.
2.
2.
5.5338E—4
.03603869
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202
40.
35.
2.
2.
5.5338E-4
.03603869
0.
203
40.
35.
2.
2.
5.5338E-4
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0.
204
40.
35.
2.
2.
5.5338E-4
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0.
205
40.
35.
2.
2.
5.5338E-4
.03603869
0.
206
40.
35.
2.
2.
5.5338E-4
.03603869
0.
207
40.
35.
2.
2.
5.5338E-4
.03603869
0.
208
40.
35.
2.
2.
5.5338E-4
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0.
301
40.
35.
2.
2.
5.5338E-4
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.13318532
302
40.
35.
2.
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304
40.
35.
2.
2.
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305
40.
35.
2.
2.
.5338E-4
.03603869
0. 1
306
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98
-------
163. In the "PWAT-PARM4" section, calibrated parameter values of "CEPSC", "UZSN", "NSUR",
"INTFW", "IRC", and "LZETP" can be found.
,1
pr
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Courier New
11
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.
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©
For details about the HSPF UCI file, see Bicknell et al. (2005) or "C:\BASINS45\docs\HSPF.chm".
View Calibrated Flow Parameter Values with WinHSPF
The WinHSPF user interface can be used to view calibrated parameter values.
164. Double-click (left) on the icon to execute the WinHSPF.
i
i
&
~
I ¦
WinHSPF3.0
99
-------
165. The following WinHSPF window appears.
P[~Hydrological Simuiatio^rogra^
File Edit Functions Help Ji-S'id HOii.-'AQi/Io ~ ki
166. In the window above, select "File>Open".
Hydrological Simulation Program - Fortran (h
File Edit Functions Help ~ Ik
| QjOpen ^
Close
Save
Save As...
1 ^
1 O)
II -1
167. The following window appears. Browse and choose
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily\04030101_flow.uci",
then click "Open". Make sure NOT to select "04030101.uci", since it is the initial UCI file prepared by
SDMPB.
*41 Locate UCI file to open
•
1—eM
C3K J^ " HSPF-PEST ~ Flow ~ Daily
~ | | | Search Daily p |
Organize ~ New folder
1= •* Q| 0
i* PEST14
SARATi m eSeri esllti 1 ity
J, SDMPB
ijii bin
etc
£ HSPF-PEST
i* HSPF-PEST.1
. EPAWaters
HSPF
^ HSPF-PEST
Jy Flow
Name
§J 04030101.uci
0^ 04030101_flow.uci
II
Daily
J. Microbe
¦qtjs 0403010l_flow.uci Date modified: 7/14/2017 4:25 PM
*1 UCI File Size: 119 KB
Filename: 0403Q101_flow.uci ~ [ UCI files (\uci) ~
Open ^ [ Cancel
100
-------
168. The HSPF project on the Manitowoc River Basin will populate the WinHSPF Ul which illustrates
linkage of subwatersheds, proportion of land use types in each, etc. Details about WinHSPF Ul can
be found in the WinHSPF Manual, typically in the install folder "\BASINS45\docs\WinHspf30.chm".
x
Ire og ca Simulation Program - Fortran (HSPF): 04030101_flcw.u<
¦ ~ L3 A if ¦ ©
Functions Help
Water/Wetlands
¦A ti 3
~
Barren or Mining
Upland Shrub Land
Agriculture - Cropla
Agriculture - Pastur
| Reaches
- ¦
RCHRES5
llmplnd (Acres)
| Perlnd (Acres)
I Total (Acres)
169. To view the calibrated HSPF flow parameters, select "Functions>lnput Data Editor" or click on
in the tool bar.
Hydrological Simulation Program - Fortran (HSPF): 0403Q101_flow.uci
File Edit
O
Point Source Editor
Output Manager
101
-------
170. The following window appears. Note that only bolded sections have records in the UCI file. For
example, "FORMATS" has no records in the UCI fi
1 WinHSPF - Input Data Edit*
GLOBAL
OPN SEQUENCE
FTABLES
EXT SOURCES
FORMATS
NETWORK
EXT TARGETS
SPEC-ACTIONS
SCHEMATIC
MASS-LINK
ffl- PERLND
i IMPLND
i RCHRES
jj COPY
[J PLTGEN
ffl- DISPLY
Close
e, but "FTABLES" does.
171. Expand the "PERLND" section by clicking + at the left.
m
WinHSPF - Input Data Editor
GLOBAL
OPN SEQUENCE
FTABLES
EXT SOURCES
¦FORMATS
NETWORK
EXT TARGETS
SPEC-ACTIONS
SCHEMATIC
MASS-LINK
PERLND
|j IMPLND
m- RCHRES
COPY
SI PLTGEN
[j DISPLY
Close
102
-------
172. Expanding "PERLND", by clicking "+" to the right, produces the following figure which indicates
there are records in "GENERAL", "ATEMP", "SNOW", "PWATER", "PSTEMP", and "PQUAL".
/inHSPF - Input Data E..
I
SCHEMATIC
*
MASS-LINK
- PERLND
&¦ GENERAL
[j ATEMP
ffl- SNOW
i PWATER
BSEDMNT
j] PSTEMP
PWTGAS
ffl- PQUAL
EB MSTLAY
[j- PEST
fr-NITR
[jPHOS
S TRACER
cm mi k m
Close
173. Expand "SNOW" and "PWATER".
WinHSPF - Input Data E...
0 SNOW
ICE-FLAG
SNOW-FLAGS
SNOW-PARM1
SNOW-PARM2
MON-MELT-FAC
SNOW-INIT1
SNOW-INIT2
B PWATER
PWAT-PARM1
PWAT-PARM2
PWAT-PARM3
PWAT-PARM4
PWAT-PARM5
PWAT-PARM6
PWAT-PARM7
Close
103
-------
174. Double-click (left) on "SNOW-PARM1" to open the window below, where the calibrated
parameter value of "KMELT" can be found. Click "OK" to close.
I b l^a-r
a Edit Table PERLND:SNOW-PARMl . . .
R Show description
OpNum
| Description
|lat
|melb/
SHADE
| SNOWCF
| COVIND
| KMELT
| TEASE
101
Water/Wetlands
44.09
see
0.3
1.2
10.
.20000000
32.
102
Urban
44.09
902
0.3
1.2
10.
.20000000
32.
103
Barren or Mining
44.11
922
0.3
1.2
10.
.20000000
32.
104
Forest
44.1
925
0.3
1.2
10.
.20000000
32.
105
Upland Shrub Land
44.09
875
0.3
12
10.
.20000000
32.
10S
Agriculture - Cropla
44.09
900
0.3
1.2
10.
.20000000
32.
107
Grass Land
44.09
896
0.3
1.2
10.
.20000000
32.
108
Agriculture - Pastur
44.08
877
0.3
1.2
10.
.20000000
32.
201
WaterA'/etlands
44.05
846
0.3
1.2
10.
.20000000
32.
r>m
1 IrKan
AA A*
Q7fi
n i
1 *>
m
•n
Table: SNOW-PAKM1, First group of SNOW parameters.
< PLS> LAT
x - x degrees
ME LEV
(ft)
COVIND
(in)
KMELT TBASS
(in/d.F) FOREST
*** x - x
OK
Cancel Apply
LZSN INFILT
(in) (in/hr)
Help
LSUR
(ft)
KVARY
(1/in)
AGWRC
(1/day)
J
104
-------
176. In the "Input Data Editor" window, double-click (left) on "PWAT-PARM3" to open the following
window, where calibrated parameter values for "DEEPFR", "BASETP", and "AGWETP" can be found.
Click "OK" to close.
Edit Table PERLND:PWAT- PARM3 | i a 'l"B' UgkJl
F Shaw description
OpNum Description
101
102
103
104
105
106
107
103
201
Water/Wetlands
Urban
Barren or Mining
Forest
Upland Shrub Land
Agriculture - Cropl3
Grass Land
Agriculture - Pastur
Water.Wetlands
PETMAX
| PETMIN
| INFEXP
| INFILD
/DEEPFR
|BASETP
40.
35.
2.
2.
5.533BE-4
.03603869
40.
35.
2.
2.
5.533BE-4
.03603869
40.
35.
2.
2.
5.533SE-4
.03603869
40.
35.
2.
2.
5.533BE-4
.03603369
40.
35.
2.
2.
5.5338E-4
.03603369
40.
35.
2.
2.
5.533SE-4
.03603369
40.
35.
2.
2.
5.533BE-4
.03603369
40.
35.
2.
2.
5.533BE-4
.03603369
40.
35.
2.
2.
I 5.533SE-4
.03603369
AGWETP
.13313532 _|
0.
0.
0.
0.
0.
0.
0.
.13313532
Table: PWAT-PARM3, Third group cf PWATER Parameters.
*** < PLS>
x x - x
PETMAX
(deg F)
PETMIN
(deg F)
OK
Cancel
Apply
Help
177. In the "Input Data Editor" window, double-click (left) on "PWAT-PARM4" to open the following
window, where calibrated parameter values for "CEPSC", "UZSN", "NSUR", "INTFW", "IRC", and
"LZETP" can be found. Click "OK" to close.
i| Edit Table PERLNiD:PWAT-PARM4
P Shew description
OpNum
| Description J^EPSC
| UZSN
| NSUR
| INTFW
| IRC
| LZETP
101
Water/Wetlands
.17193342
.35027257
.27303433
5.4347643
.67299970
.40454173
102
Urban
.17193342
.35027257
.27303433
5.4347648
,67299970
.40454173
103
Barren or Mining
.17193342
.35027257
.27303433
5.4347643
.67299970
.40454173
104
Forest
.17193342
35D27257
.27303433
5.4347643
.67299970
.40454173
105
Upland Shrub Land
.17193342
.35027257
.27303433
5.4347643
.67299970
.40454173
106
Agriculture - Cropla
.17193342
.35027257
.27303433
5.4347643
.67299970
.40454173
107
Grass Land
.17193342
.S5Q27257
.27303433
5.4347648
.67299970
.40454173
103
Agriculture - Pastur
.17193342
.35027257
.27303433
5.4347648
.67299970
.40454173
201
WatenWetlands
L .17193342
.35027257
.27303433
5.4347648
.67299970
.40454173
Table: PHAT-PAEM4, Fourth
x - x
CEPSC
(in)
UZSN
-------
SECTIONS
VISUAUZATING HSPF FLOW CALIBRATION AND SIMULATION RESULTS
REGISTERING CALIBRATION RESULTS WITH BASINS
This section registers flow results for calibrated simulations (<...\HSPF\Flow\Daily\04030101.wdm>).
178. Execute BASINS. When "Welcome to BASINS 4.5" appears, click "Manitowoc" to open the
BASINS project generated by SDMPB.
¦ Welcome to BASINS 4.11
Hi
Build New Project
View Documentation
[iv] Show this dialog at startup
Close
179. The following map layers appear in the BASINS Ul.
[1 unnamed -• X: 629,682.052 Y: 2,332.491.478 Meters Lat: 43.750 Long:-88.141
File Watershed Delineation »¦?! Models '' Compute Launch idfl Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
New Open Save Print Settings
[J9| 53 ¦¦ A > IP
Pan [in J Out Extent Selected Previous Next Layer
Legend
Layers | Toolbox |
BBQ Observed Data Stations
|BB NWIS Daily Discharge Stations
:: e a '• IS S ft
Add Remove Clear Symbology Categories Query Properties Table
Ell7 O % Ml shp s J <9 & S
Select Deselect Measure Identify Label Mover New Insert Add Remove Copy Paste Merge Erase Erase beneath Move Rotate Resize
EES Point Sources and Withdrawals
ED Permit Compliance System ^ ~
S0 NLDAS Grid Center ^ ~
B0 Weatherstation Sites 2006 ^ •
SO Animals ^ •
00 Point Sources ^ ~
ED Bacteria *
E0 Reach File. V1 ^ —
SO NAWQA Study Area Unit Boundaries [H
ED Accountinq Unit Boundaries ^
E0 Cataloaina Unit Boundaries D
ED County Names ^
ED County Boundaries D
ED EPA Reaion Boundaries ^ D
E0 State Boundaries CH
ED Maior Roads ~~
ED Ecoreqions (Level III) ^ ~
ED Land Use Index ^ CH
ED State Soil ^ ~
E0 Simplified Flowline
EB Simplified Catchment ^ D
106
-------
180. Select "File>Manage Data".
Hi! BASINS 4.1 ^Manitowoc*!
File
Watershed Delineation
Models
Comput
~ New
La L
a Open Project
Add
Ren
^ Save
J3i £
IP
& Save As
'revious Next
Layer
4 Archive/Restore Project...
Download Data
i?
X
C Manage Data)
>
~
18 Save Data In... ~
S •
_ Print
^ ~
^ *
O Recent Projects ~
181. The following "Data Sources" window appears.
Data Sources
File Analysis Help
3 WDM
C U5efs^*+>e)an jemTechno)ogies SDMP8.HSPF-PEST_Tir«tjrr«t wdm (63)
CUsersg*t>e)anierr,Techriologies.SDMP8.HSPF-PEST_1\rriM5.flcrA wdm (1)
ZULSl
I Troesenes :WDM
C \UsereN
-------
182. In the "Data Sources" window, select "File>Open" which results in the "Select a Data Source"
window.
a. Select "WDM Time Series" by double-clicking on it.
b. Browse and select "04030101.wdm" in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily\".
c. Click "Open".
Once the file is imported, it will appear in the "Data Sources" window.
¦I Data Sources
0
File Analysis Help
a-Ega
C:\Users\gwtel an''.iemTechnologies''.SDMPB'',HSPF-PEST_T'.rr€t\fr.et. wdm (63)
¦C:\Users\gwtiel a rv.iemTech nolog ies''.SD M PB'.H SPF - PEST_1 \nwis'iflow.wdm (1)
¦ C:\Users'gv/helan'.iemTechnologieslSDMPB'.HSPF-PEST_1 \HSPF\Q4G30101 .wdm (1S5)
¦ C:'1,Users,|gwhelan\iemTechnologies'l.SDMPff,HSPF-PEST_1\HSPF-PEST,,Flow\Daily'1,04030101 .wdm (185)
183. Close the "Data Sources" window, by selecting "File>Exit".
Analysis Help
View File As Text
Show File Folder
Remove Data From File
d Save In,..
Close Selected
Close All
c\met\met.wdm
c\nwis\flow.wdn
c\HSPF\Flow\D
t:\NWIS\NWIS_
c\NWIS\NWIS
c\HSPF\Flow\
Km)
Timeseries::Script
C-\Tfimn\SDMPmifif:t\Manitnwnn\HF;PRFInw\r)ailv\{)403
108
-------
COMPARING HSPF FLOW SIMULATION RESULTS BY PLOTTING MULTIPLE TIME SERIES
HSPF performs hourly simulations and can publish the results as hourly, daily, monthly, etc. The
observed flows obtained from the USGS gage station are daily values, so the calibrated results are
associated with the observed daily values.
Identify Data Sources Containing Daily Flow
To plot daily flow data time series of discharges, the file containing the time series data must be
identified within BASINS plotting tools. Once identified, calibrated and observed flow time series can
plotted simultaneously.
184. Within BASINS, select "Analysis>Graph".
m
ibology
I Analysis | Layer View Bookmarks Plug-ins
Data Tree
* DFLOW
4 Climate Assessment Tool
1 List
watershed Characterization Reports
i4 Synoptic
i * Seasonal Attributes
- d Reclassify Land Use
Shapel
shp
Add Re
185. The following "Select Data To Graph" window appears.
Select Data To Graph]
File Attributes Select Help
Select Attribute Values to Filter Available Data
[Scenario
~ ] | Location
~ 11 Constituent
~ [ time step
~ 11 Time Unit
-
04030101
04085395
- ATEM
- 1
Hour
COMPUTED
04085425
g CLOU
_ ~Missing~
Day
NLDAS
04085427
DEWP
3
""Missing^
OBSERVED
IMP102
DQAL
Observed
IMP202
FLOW
PT-OBS
IMP302
Flow
IMP402
- HEAT
-
Matching Data (534 of 534)
OBSERVED
W1473269
PREC
1
Hour
*
OBSERVED
WI473269
ATEM
1
Hour
m
OBSERVED
WI473269
WIND
i
Hour
OBSERVED
WI473269
SOLR
1
Hour
OBSERVED
WI473269
PEVT
i
Hour
OBSERVED
W1473269
DEWP
1
Hour
OBSERVED
WI473269
CLOU
i
Hour
COMPUTED
WI473269
PREC
1
Hour
NLDAS
X294Y152
PREC
1
Hour
NLDAS
X295Y151
PREC
1
Hour
-
Selected Data (0)
Dates to Include
Start none
End none
|_] Change Time Step To: 1 [Hour ~ ] [Average/Same
109
-------
186. To identify data source locations, a column of "Data Sources" must be added. Select
"Attributes>Add".
Select Data To Graph_J
File
Select
Attributes
cation
04030101 04085395
COMPUTED 04085425
187. In the "Select Data To Graph" window, select "Data Source" for the column to be addec
T
Select Data To Graph
File Attributes Select Help
Select .Attribute Values to Filter Available
Data
Scenario
Location
Constituent
Time Unit
Time Step
04030101
NLDAS
OBSERVED
PT-OBS
04085427
IMP102
IMP202
IMP3Q2
IMP402
ATEM
CLOU
DEWP
DIAZINON
DQAL
* Hour
Day
1
Selected Data {0)
Date Range of Selected Data
All Common
Start none none
End none none
Data Source
C:i|,Users\gwhelan'|j+
C:\Users \gwhelarv,i+
C:'',Users\gwhel an\i+
C:\Users\gwhelan\i+
Matching Data {434 of 434)
NLDAS
X295Y153
PREC
Hour
1 C:\Users\gwhelan '
NLDAS
X295Y153
ATEM
Hour
1 C:\Users\gA'helan!—'
NLDAS
X295Y153
WIND
Hour
C:\Users\gwhelairi
NLDAS
X295Y153
SOLR
Hour
C:\Users\gwhe!an
NLDAS
X295Y153
PEVT
Hour
C:\Users\gwhdan
NLDAS
X295Y153
DEWP
Hour
C:\Users''gwhelan
NLDAS
X295Y153
CLOU
Hour
1 C:\Users\grwhelari
NLDAS
X295Y153
WINDV
Hour
1 C:\Users\gwtelan ^
Subset. Split, or Filter Selected Data
Ok
Cancel
110
-------
188. To see the full path of the data source, the width of each column must be adjusted. In
"Matching Data", click and drag the vertical lines between adjacent columns to adjust widths.
Matching Data (24 of 24)
OBSERVED W1473269 PREC
OBSERVED W1473269 ATEM
OBSERVED WI473269 WIND
OBSERVED Wl 473269 SOLR
OBSERVED ^^73269 PEVT
OBSERVED ^VI473269 DEVVP
OBSERVED WI473269 CLOU
COMPUTED WI473269 PREC
NLDAS X294Y152 PREC
NLDAS X296Y152 PREC
189. After adjustment, column widths will look like those below.
^ i(| Select Data To Graph ^ ^ ^
File
Attributes
Select Help
Select attribute Values to Filter Available Data
|Scena T
| [ Location
H
| Consti
T Til » i Ti ~ 11 Data Source ~ 1
040301+
040S5427
ATEM
* Hour
C:\Users\gwhelan\ierTiiT ech nolog ies\SD M PB\H SPF- PEST_1 \H SPF-PEST1,F low'.Dai ly''.04030101. wd m
NLDAS
IMP1Q2
y
CLOU
J Day
C:\Users\gwhelan\iemT echnologieslSD M PB'.H SPF- PEST_1 \H SPF\04030101 .wd m
OBSER+
IMR202
DEWP
C :\Users\gwhelan\iemT echnolog ies\SD M PB\H SPF- PEST_1 \met\met.wdm
PT-OBS
IMP3Q2
DIAZIN
C:\Users'igv/helamiemT echnolog ieslSD M PB'.H SPF-PEST_1 \nwis\flow. wdm
IMP402
DQAL
luncm
ri
Matching Data (434 of 434)
NLDAS
X295Y153
PREC
Hour
C:\Users\gwhelan\iemT ech nologieslSD M PB'.H SPF- PEST_1 ''.met'1,met. wdm *•
NLDAS
X295Y153
ATEM
Hour
C:\Usersl|^whelan\iemTechnologies''SDMPBl|,HSPF-PEST_1\niet\met.wdm
NLDAS
X295Y153
WIND
Hour
C:\Users\gwhdan\iefnT'echnolog ieslSD MPB\HSPF- PEST_1 \met\met.wdm
NLDAS
X295Y153
SOLR
Hour
C:\Users\gwheJan\iemTechnolog ieslSD MPB'.HSPF- PEST_1 ''.mef'.met.wdm
NLDAS
X295Y153
PEVT
Hour
C:\Users\gwhelan\iemTechnologies\SDMPB'.HSPF-PEST_1\miet\rnet.wdm
NLDAS
X295Y153
DEWP
Hour
C:\Users\gwhelan\iemTech nolog ies\SDM PB'.HSPF- PEST_1 \met\met.wdm
NLDAS
X295Y153
CLOU
Hour
C :\Users',,gwhelan\iemT ech nologies'',SDMPB'.HSPF- PEST_1 \met\melwdm
NLDAS
X295Y153
W1NDV
Hour
C :\Users\gwhel an\iemT ech nolog ies\SD MPB'.HSPF-PEST_1 \met\met. wdm
Selected Data (0)
Date Range of Selected Data
All
Start none
Common
none
H Subset, Split, or Filter Selected Data
End none
none
Ok ] [ Cancel
in
-------
View Results for a Daily Time Step
190. Results associated with daily flow time series will be plotted. "FLOW" under the "Constituent"
column contains flow time series with daily time steps. These results must be identified and
chosen.
a. Click "FLOW" in the "Constituent" section. Make sure all "FLOW" time series with selected
"Constituents" appear in "Matching Data".
b. Under "Matching Data":
i. select "FLOW" for "OBSERVED" and "04085427", which the observed gaging station
daily data at the pour point of the watershed,
ij. Select the two "RCH9" "FLOW" data, each representing uncalibrated
("C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF\04030101.wdm")
and calibrated ("C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-
PEST\Flow\Daily\04030101.wdm") simulation results,
iii. Make sure that time series appear in "Selected Data".
tf| Select Data To Graph
File Attributes Select Help
Select Attribute Values to Filter Available Data
| Scenar ~ | Location ~ [ Constituent
04030101 RCH2
NLDAS RCH3
OBSERV+ RCH4
DIAZINON
DQAL
[Tin [Til T | [ Data Source
Hour
- Day
PT-OBS RCH5
RCH6
MICROBES
PERO
Selected Data (3 of 434)
04030101 RCH9 FLOW
04030101 RCH9 FLOW
OBSERV+ 04085427 FLOW
Date Range of Selected Data
All Common
Start 1972/07/26 2000/01/01
End 2017/06/23 2012/12/31
1 C:\Users\gwhelan\iemT echnologies\SDMPB\HSPF-PEST_"f\HSPF-PEST\Flow\Daily\04030101. wd m
C:\Users\gwhelan\iemT ech nolog ies'.SD M PB'.H SPF- PEST_1 \HSPF\04030101 .wd m
C:\Users'|1gwhelan,|.iemTechnologies\SDMPBl,HSPF-PEST_Tl.rr>et',.met.wdm
C:\Users\gvvhelan\iemTechnologie3'.SDMPB',HSPF-PEST_1\nwis\flow.wdm
Matching Data (7 of 434)
OBSERV+
04085427
FLOW
Day
1
C:\Users\gwhelan\iemTechn0logies\SDMPEMHSPF-PEST_1\rawis\flow.wdm
04030101
RCH9
FLOW
Day
1
C:\Users\gwhelarAiemTechrrologies\SDMPB\HSPF-PEST_r\HSPF\04030l01.wdm
PT-OBS
RCH1
FLOW
Day
1
C:\Users''.gwhelanliemT echnologies'.SD MPB^HSPF-PEST^HSPF'1,04030101 .wd m
PT-OBS
RCH1
FLOW
Day
1
C:\Users\g*vhelan\iemTechnologies\SDMPB',HSPF-PEST_1 \HSPF\04030101 .wd m
FLOW
C:\Users\gwheIan\iemTechrologies\SDMPB\HSPF-PEST_1\HSPF-PEST^FIow\Daily\04030101.wdm
PT-OBS
RCH1
FLOW
Day
1
C f'.Users'-gwhelanliemT echnologieslSD M PB',HSPF-PEST_1 \HSPF-PEST',F la^.Dai ly\04030101. wd m
PT-OBS
RCH1
FLOW
Day
1
C:\Users''^whelan\iemTechnologies^DMPB'.HSPF-PEST_1\HSPF-PEST'.FIaA-\Daily\04030101. wd m
Day 1 C:\Users \gvvhelarniemTechnologies',.SDMPB',HSPF-PEST_1\HSPF\04030101 .wdm
Day 1 C:\Users \gvvhdan\iemTechriologies'l.SDMPB'lHSPF-PEST_T,.HSPF-PEST\FlQw\Daily\04030101. wdm
Day 1 C :\Users\gwhelan\iemT echnologies\SDMPB',HSPF-PEST_1 \nwis\flow.wdm
O Subset. Split. or Filter Selected Data
Ok
Cancel
112
-------
191. The simulation period is from "2001/01/01" to "2012/12/31", excluding the one-year model
warm-up period of 1990.
a. Check the "Submit, Split, or Filter Selected Data" box.
b. Click "OK".
c. Change the "Start" date to "2001/01/01" and the "end" data to "2012/12/31".
d. Click "Ok".
uj Filter Data
Subset By Date Seasons Filter By Value Change Time Step Timeseries Math
All
Common
Start 1972/07/26 2000/01/01
End 2017/06/23 2012/12/31
2001/01/01
2012/12/31|
~Z\ Apply month/day range to each year
Ok
Cancel
192. The "Select Data To Graph" window disappears, and the "Choose Graphs to Create" window
appears. Check "Timeseries", then click "Generate".
Flow/Duration
Frequency
Runninq Sum
Residual (TS2 - TS1) (two datasets needed but 3 data sets sek
Cumulative Difference (two datasets needed but 3 datasets sel
Scatter (TS2 vs TS1) (two datasets needed but 3 datasets sek
m Multiple WQ Plots
All
None
Cancel
Generate
193. The following "Timeseries Graph" is generated.
File Edit View Analysis Coordinates Help
113
-------
Note that in plot label, the first two labels have the same name, but they can be differentiated, as the
abeling order follows that of the Selected Data section:
Sefccled Dot* (3 *36)
0*030101 RCH9 FLOW Day 1 C iemTecfxoto^esSOMPeWSPf-PCST.I'HSPf0*030101
0*030101 RCH9 FLOW Day 1 C U»er8>*et0«iWmT«aw»to^^SOMf®HSPFPeSTJ'HSPFP^f»ow'iOe*f'OaO3OlOl «Sm
OBSEflV* 040S5427 FLO1.'/ D»y 1 C U»«fS»wt>eUn»emTec>vx)legfe»SD**PB>H5PF-F€S7_Trrwis,Scwwdm
In this case, the first label refers to uncalibrated flows, the second label refers to the calibrated flows,
and the third label refers to observed flows. When multiple results are plotted, the first label is
usually associated with the left Y-axis. When editing the plot, the software will designate which curve
is associated with which axis (e.g., left Y-axis versus right Y-axis).
194. To differentiate the curves more easily, users can control curve color. Select "Edit>Graph".
kTimeseries Graph j
File
Edit] View Analysis Coordinate
(5raph^
1
Copy Ctrl -i-C
¦SERVED F
030101 FL
j Flow at 0'
5,000
-
U.M.ILT U4
Simulate!
195. The following "Edit Timeseries Graph" window appears.
||f Edit Time-Series Graph
0
Aces !
Ads
Type
Title
Curves
Lines
Legend
Text
Q Bottom X
® Time
LeftY
Linear
Right Y
Logarithmic
Auxiliary Y
Probability
Daily
Zoom Range 2000/12/31 to 2012/12/31 ~ Reverse
Major Units [V] tics [Zl grid Grid Color
Minor Units [V] tics 0 grid Grid Color
Font
Font
I
J
Apply Automatically Apply
114
-------
196. Under the "Axes^tab, change the "Title" text box to "YEAR". Click "Apply".
tij Edit Time-Series Graph
Axes Curves Lines Legend Text
Axis a Bottom X O Left Y
Type @ Time Linear
Title
Right Y
Logarithmic
Auxiliary Y
Probability
Year]
Zoom Range 2000/12/31 to 2012/12/31 Reverse
Major Units m tics \J_ grid Grid Color
Minor Units [7j tics 0 grid Grid Color
Font
Font
Apply Automatically
Apply
197. For "Axis", select "Left Y", then change the "Title" text box to "Average Daily Discharge
Click "Apply".
(cfs)".
Edit Time-Series Graph
Axes Curves Unes Legend Text
.Axis
Type
Title
Bottom X Q Left Y
Time a Linear
Right Y
Logarithmic
.Auxiliary Y
Probability
Average Daily Discharge |ft"3/s)|
Zoom Range G
Major Units [7 tics [Zl grid
Minor Units [/ tics [Zl grid
to 20.000
~ Reverse
Grid Color
Font
Grid Color
Font
Apply Automatically
Apply
115
-------
198. Under "Curves",
a. select "Daily Observed Flow At 04085427" for "Curve",
b. change the "Label" text box to "Observed".
c. Change "Color" to blue.
d . Click "Apply".
y.1 Edit Time-Series Graph
199. The first and second time series have the same name: "Daily 04030101 Flow At Rch9". The first
(uncalibrated) must be selected first. For "Curve", select the time series "Daily 04030101 Flow At
Rch9", then change the "Label" text box to "Simulated (uncalibrated)". Change "Color" to gray.
Click "Apply".
r 1 mn—~—n
Note that the results of this curve correlate to the "Left Y Axis".
I I Apply Automatically Apply
Note that the results of this curve correlate to the "Left Y Axis".
Click "Apply".
Edit Time-Series Graph
Axes
Curves
Lines
Legend
Text
Curve
Label
Y Axis
Color
13 Line Width
\y\ Symbols Size
Daily 04030101 Row At RchS
Simulated (uncalibrated)
a Left Right .Auxiliary
Random New Colors For All Curves
Solid
None
* RearwardStep
~ ~ Fill
Apply Automatically Apply
116
-------
200. For "Curve", select the second time series "Daily 04030101 Flow At Rch9", then change the
"Label" text box to "Simulated (calibrated)". Change "Color" to red. Click "Apply".
if Edit Time-Series Graph
rotes
Curves
Lines
Legend
Text
Curve
Label
Y Axis
Color
0 Line Width
F71 Symbols Size
Daih/ 04030101 Row Pi Rch9
Simulated {calibrated)
Q Left Right Auxiliary
Random New Colors For All Curves
1
7
Solid
~ ReaPA'andStep
None
- ~ Fill
Apply Automatically
Apply
Note that the results of this curve correlate to the "Left Y Axis".
201. Close "Edit Timeseries Graph" window. Three time series appear in the "Timeseries Graph"
window.
This figure overlays observed, uncalibrated and calibrated flow time series, and illustrates
improvements in calibrated over uncalibrated flows, using PEST.
117
-------
202. The graph can be exported as an image file. In the "Timeseries Graph" window, select
"File>Save As...".
Timeseries
Grap
| File
Edit View Analysis Coi
I r
pb serve
Simulate
Simulate
Select Data
C^ave Ap
Print
203. Choose the desired file format (.tif, for example), define a file name (Result.tif, for example),
then click "Save".
Organize - New folder
SDMProject *
Manitowoc
EPAWaters
I HSPF
i HSPF-PEST
I Flow
Daily
Hourly
Microbe
I hucl2
04030101
LocalData
No items match your search.
File name: Result
Save as type: Tiff Format (*.tif)
- Hide Folders
Save
Cancel
118
-------
204. The exported image file is shown below.
H Time-Series Graph ~~ • " • • * • | | A ¦ 1 0 | B
File Edit View Analysis Coordinates Help
Simulated (uncalibrated)
Simulated (calibrated)
Observed
jJL
...AVi .jv L
,, 1
L Aj
2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012
Year
205. Close the "Timeseries Graph" window.
119
-------
SECTION 4
CALIBRATING MICROBIAL-RELATED PARAMETERS
PREPARING MICROBIAL OBSERVATION DATA
HSPF microbial parameter calibration requires microbial observation data at the outlet of the watershed
(i.e., "*_microbe_obs_009.txt"). The data needs to be prepared in the following format.
yyyymmdd hh:mm conc(l)
yyyymmdd hh:mm cor\c(2)
yyyymmdd hh:mm conc(n)
yyyymmdd captures the year (yyyy), month {mm), and day [dd); and hh:mm captures the hour [hh) and
minute (mm), conc(i) is /th observation of microbial density or concentration (Counts/L or Cells/L), and n
is the number of observations.
206. Locate (or create) a txt file, titled "04030101_microbe_obs_009.txt". In this example, the
"04030101_microbe_obs_009.txt" file can be located in the folder:
< ...\SDMPB\bin\Data\HSPF-PEST\>
« bin ~ Data ~ HSPF-PEST
~ H* I Search HSPF-PES1
File Edit View Tools Help
Organize »
JOpe
Share with »
Print
Burn
§EE
o
SDMPB
ii bin
Data
HSPF-PEST
LocalData
met
MSM
national
NationalData
SWAT-SWATCUP
Name
I , 04030101_microbe_obs_009.txt
~
I"1 HSPF_PEST_flow.exe
1"! HSPF_PEST_microbe.exe
[3] Input_flow,in
Input_rnicrobe.in
rrr
04030101_microbe_obs_009.txt Date modified: 11/1/2016 4:29 PM
Text Document Size: 925 bytes
1 item selected
120
-------
207. Open the text file with a text editor (e.g., Notepad, TextPad, etc.)
04030101_microbe_obs_009.txt - Notepad ¦
ii-inii x r
1 File Edit Format View Help
20110604
10:15
210
20110609
10:25
1080
20110611
11:25
50000
20110616
10:43
30000
20110618
10:00
29000
20110623
09:42
96000
20110625
10:00
44000
20110630
10:07
2200
=
20110702
10:05
1030
20110707
10:03
880
20110709
10:15
370
20110714
10:27
72000
20110716
10:07
4400
20110721
10:09
83000
20110723
10:20
190000
20110728
10:25
1230
20110730
11:02
2300
20110804
10:30
1610
20110806
10:10
960
20110818
10:21
7550
20110820
10:33
5400
20110825
09:53
2123
20110827
10:38
6133
20110901
10:23
3100
•
<
~
Ln 1, Col 1
208. Exit the file by "File>Exit".
121
-------
PREPARING PEST INPUT FILES FOR HSPF MICROBIAL PARAMETER CALIBRATION
Create Microbial Folder and Populate with Necessary Files
This section prepares the microbial working folder and populates it with PEST input files for the HSPF
microbial parameter calibration.
209. Create a new folder (",..\Microbe\"); in this example the subfolder is in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\".
File Edit View Tools Help
Organize » ^ Open Include in library »
i~ - 3] #
,Ji EPAWaters *
>•
Name
HSPF
Flow
HSPF-PEST
Microbe
Ji Flow
Microbe
. hud.2
H HSPF_PEST_flow.exe
l j Input_flow,in
LocalData
met
ji NHDPIus
. NLCD
^ NWIS
Jul pes
4 rrr ~
Microbe Date modified: 7/17/2017 8:15 AM
j| File folder
1 item selected
¦ 'ip,
_ | Computer
122
-------
The HSPF UCI file ("04030101_flow.uci"), written by PEST, contains parameters calibrated by PEST
which represent the final HSPF simulation associated with flow calibration. The calibrated flow time
series is captured in the modified "04030101.wdm" file. In this example, daily calibrated flow results
in the "04030101_flow.uci" and "04030101.wdm" files are located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daily".
File Edit View loois Help
Organize »
^ Open
EPAWaters
HSPF
HSPF-PEST
Flow
Daily
Microbe
hucl2
LocalData
met
NHDPIus
Share with »
Burn
New folder
Name
i== T SI
[&y runPEST.bat
[i£] runHSPF.bat
[S1! met.wdm
~
| £ 04030101,wdm
0 , 04030101 flow.uci
if] 04030101 .uci
Lj 04030101_flow,tpl
~ HSPF.log
\
3 items selected Date modified: 7./14/2017 4:25 PM
Size: 49.0 MB
3 items selected
Computer
Because microbial calibration will use microbial observations in 2011 and 2012, and closely associated
with the flow simulation results, the calibration will use flow parameters calibrated with daily flow
from 2007 to 2012.
123
-------
210. Copy
• 04030101_flow.uci, 04030101.wdm, met.wdm from
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Flow\Daiiy" to
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe" and
• "04030101_microbe_obs_009.txt" to
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe".
« HSPF-PEST ~ Microbe
~ +¦*
Search Microbe
File Edit View Tools Help
Organize *
Open
Share with *
Burn
New folder JEE *
EPAWaters
HSPF
HSPF-PEST
Flow
Daily
Microbe
hucl2
LocalData
met
NHDPIus
NLCD
NWIS
pes
Name
JT 04030101 .wdm
.0 04030101 flow.uci
04030101 microbe obs 009.txt
,ff, met.wdm
T- 4
rrr
4 rtems selected Date modified: 11A/2016 4:29 PM - 7/14/2017 4:25 PM
Size: 69.4 MB
4 items selected
Computer
124
-------
The executable "HSPF_PEST_microbe.exe" prepares necessary files for the HSPF microbial parameter
calibration with PEST.
• Four PEST files
o PEST control file (.pst): PEST parameters, model parameters metadata (names, initial
values, ranges, etc.), parameter groups, observed flow data, and path of model
executables.
o PAR2PAR TPL file (_P2P.tpl): Structure model input file (i.e., "*_microbe.uci") and
locations of where calibrating parameter values are to be placed,
o PEST template file (.tpl): Structure of the PAR2PAR input file and locations of where
calibrating parameter values are to be placed,
o PEST instruction file (.ins): Describes how PEST will read the model output file for
calculating error statistics.
• Two batch files
o "runHSPF.bat": Executes HSPF (i.e., WinHSPFIt.exe) and PAR2PAR (i.e., par2par.exe")
o "runPEST.bat": Executes HSPF parameter calibration with PEST
"lnput_microbe.in", the default input file used with "HSPF_PEST_microbe.exe", contains details for
preparing PEST input files which can be found in Appendix D. "lnput_microbe.in" defines
• Folder paths of HSPF (i.e., WinHSPFIt.exe), PEST (i.e., pest.exe) and a working folder where
HSPF input files are located (i.e., "...\ HSPF-PEST\Microbe\". In this example, the folder path
for microbial calibrations is
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe".
• Calibration parameter names and their ranges for each land use group
• Land use groups that differentiate parameter values
• Number of years for model warm-up
As default, "HSPF_PEST_microbe.exe" and "lnput_microbe.in" are located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\bin\Data\HSPF-PEST", created by SDMPB, and copied to
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST". These files can be located in
any folder, but both must be in the same folder. In this example for parameter microbial calibrations,
"HSPF_PEST_microbe.exe" and "lnput_microbe.in" must be located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe".
125
-------
211. In this example, copy "HSPF_PEST_microbe.exe" arid "lnput_microbe.in" from
"C:\Users\gwhelan\iemTechnologies\SDMPB\biri\Data\HSPF-PEST" to
• "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST"
• "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PE5T\Microbe".
« HSPF-PEST ~ Microbe
Search Microbe
File Edit
View Tools
Help
Organize *
[M| Open
Share with ~
Burn
New folder
III
1 1 1
1 Qj
©
EPAWaters
HSPF
HSPF-PEST
Flow
Daily
Microbe
hucl2
LocalData
met
NHDPIus
NLCD
NWIS
pes
Name
£ 04030101,wdm
a 04030101_flow.uci
i j 04030101_microbe_obs_009.txt
llJ HSPF PEST. microbe.exe
Input_microbe.in
,11, met.wdm
c
rrr
PI
2 items selected Date modified: 6,'15/2017 10:39 AM - 7/7/2017 6:20 PM
Size: 139 KB
2 items selected
_
Computer
I
Once "lnput_microbe.in" is located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe", the working folder
paths in "lnput_microbe.in" must be updated.
126
-------
212. Open "lnput_microbe.in", which illustrates the updated working folder path for the hourly
microbial calibration.
File Edit Format View Help
c:\SDMPB\bin\
c:\Temp\soMProject\Marritowoc\HSPF-PEST\Mi crobe\
c:\pest\
7
1
9
water/wet 1 ands
urban
Barren or Mining
Forest
Upland Shrub Land
Agriculture - Cropla
Grass Land
Agriculture - Pastur
Traditi onal
MON-ACCUM 0.000
l.E-10 1000.00000
WSQOP
0.01000 10.00000
IOQC
0.10000
AOQC
0.10000
FSTDEC
0.00001
THFST
1.00000 2.00000
MONTH-DATA -9999
1.E-10 1000.00000
-9999
1.E10
1.E10
2.00000
-9999
213. With a text editor,
• Update the working folder path on the second line.
• On the fourth line, change the value on line 4 to "7", which indicates the first seven years
(i.e., 2000-2006) to be used for the model warm-up.
File Edit Format View Help
c:\users\gwhelan\i emTechnologi es\SDMPB\bin\
c:\users\gwhelan\iemTechnologi es\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe\
c:\users\gwhelan\i emTechnologi es\PESTl4\
water/Wetlands
urban
Barren or Mining
Forest
upland shrub Land
Agriculture - cropla
Grass Land
Agriculture - Pastur
Traditi onal
MON-ACCUM 0.000
l.E-10 1000.00000
WSQOP
n nmnn in nnnnn
-9999
127
-------
Ensure that the folder path for the HSPF and the PEST codes listed on the first and the third lines are
also correct and name of the folder location ends with a backslash (\).
NOTE: Local well data associated with the Manitowoc basin indicate an absence of microbe (i.e.,
enterococci) in underground water (i.e., interflow and groundwater). Thus, microbial concentrations
in interflow and groundwater (i.e., "IOQC" and "AOQC") do not need to be calibrated, so these data
can be removed from the file.
214. In "lnput_microbe.in", remove the lines associated with "IOQC" and "AOQC".
[Input_microbe.in - Notepaqg
File Edit Format View Help
C:\SDMPB\bin\
C:\Temp\SDMProject\Mani towoc\HSPF-PEST\Mi crobe\
C:\PEST\
7
1
9
Water/Wetlands
Urban
Barren or Mining
Forest
Upland Shrub Land
Agriculture - Cropla
Grass Land
Agriculture - Pastur
Traditional
MON-ACCUM 0.000 -9999
l.E-10 1000.00000
WSQOP
00
ioqc
3.10000
1.E10
AOQC
0.10000
1.E10
Ln 2, Col 29
215. "lnput_microbe.in" looks like the following. Save and exit by "File>Save", then "File>Exit".
Input irut robe.in - Notepad
File Edit Format View Help
C:\Users\gwhelan\i emTechnologi es\SDMPB\bi n\
c:\users\gwhelan\ieniTechno1ogies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe\
c:\pest\
7
1
9
Wat e r /wet 1 an d s
urban
Barren or Mining
Forest
upland Shrub Land
Agriculture - Cropla
Grass Land
Agriculture - Pastur
Traditi onal
MON-ACCUM 0.000
l.E-10 1000.00000
WSQOP
0.01000 10.00000
FSTDEC
0.00001 2.00000
THFST
1.00000 2.00000
MONTH-DATA -9999
1.E-10 1000.00000
-9999
-9999
128
-------
Execute Microbial Calibration using PEST
216. In "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe", execute
"HSPF_PEST_microbe.exe" by double-clicking on the icon. When the command window below
appears, put the number of microbial monitoring locations for the parameter calibration, "1" in this
case, and press ENTER.
217. In the command window below, put "9", to set the Subbasin 9 as the calibration point, and press
ENTER.
129
-------
218. In the command window below, press ENTER to close it. The command window indicates
simulation and calibration periods.
~
C:\T e m p\SDMProject\Manitowoc_20170613_Tutorial\HSPF-PEST\Microbe\HSPF_PEST_microbe.exe
tt of monitoring locations for parameter calibration?
1
Subbasin tt of the 1th monitoring location?
Simulation period: 2000/ 1/1 0: O - 2012/12/31 24: 0
Calibration period: 2011/ 6/ 4 10:00 - 2012/ 7/26 9:00
Note: Simulation period is extended to include observation period. Calibration p
eriod was determined as the period of the observation. The observation may inclu
de missing data.
Press ENTER to close this window
219. Once "HSPF_PEST_microbe.exe" is executed, the necessary microbial calibration files (four PEST
input files and two batch files) have been added to the
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe" folder.
File Edit
View Tools Help
Organize "¦
Q3 Open Share with ~ Burn
Mew folder
1= » E0 8
HSPF-PEST
Name
Type
U Flow
Daily
m 04Q30101_microbe.pst
Outlook Data File
L 0403Q101_microbe.tpl
TPL File
Microbe
|ET, 04030101_microbe_echo.out
OUT File
Jm hucl2
LocalData
met
J, NHDPIus
M nlcd
ill NWIS
pes
UCI Modified Files
Pour_Point
SDMPB Applications&Versions
Shape Files
Pi 04Q3Q101_microbe_P2P.tpl
TPL File
L i 04030101_microbe_009.ins
INS File
IS runHSPF.bat
Windows Batch File
B runPEST.bat
Windows Batch File
0 Inputjnicrobe.in
£ 04030101 .wdm
[tt, 04030101_flow.uci
|BT| met.wdm
I®.] HSPF_PEST_microbe.exe
[', 04030101_microbe_obs_009.txt
IN File
WDM File
UCI File
WDM File
Application
Text Document
4
1 m
~
7 items selected Date modified: 7/17/2017 8:50 AM Date created: 7/17/2017
3:50 AM
\ 1
Size: 839 KB
7 items selected
Computer
130
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CALIBRATING HSPF MICROBIAL PARAMETERS WITH PEST
Parameter calibration usually takes several hours, depending on the setting in PEST, number of
parameters, and model nonlinearity. Users should disable the machine's screen saver during execution,
if possible.
220. Within the "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe"
folder, execute "runPEST.bat". During microbial parameter calibration, a command window appears
and disappears multiple times, as shown below, which indicates PEST and HSPF are running
successfully. Once HSPF microbial parameter calibration with PEST is finished, the command window in
the figure above disappears.
Executing
Now
Complete
Cancel
Pause
Log
PEST Uersion 13.3. Watermark Numerical Computing.
PEST is running in parameter estimation mode.
PEST run record: case 04O30101_microbe
(See file G403G101.microbe.rec for full details.)
Model command line:
runHSPF.bat
Running model
Running model 1 time....
C:\Temp\SDMProject\Manitowoc\HSPF-PEST\Microbe>"C:\PEST\par2par.exe" C:\Temp\SDM
Project\Manitowoc\HSPF-PEST\Microbe\04030101_microbe_p2p.in
PAR2PAR Uersion 13.3. Watermark Numerical Computing.
- File 04030101 microbe.uci written ok.
C:\Temp\SDMProject\Manitowoc\HSPF-PEST\Microbe>"C:\Basins41\models\HSPF\bin\WinH
SPFlt.exe" C:\Temp\SDMProject\Hanitowoc\HSPF-PEST\Microbe\0403G101_microbe.uci
131
-------
221. Parameter calibration results are recorded in the ".rec" file: "04030101_microbe.rec" in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe".
File
Edit View Tools Help
Organize* ] Open ~ Share with T Burn New folder
1= ' SI |
EPAWaters * Name
HSPF [_, 04030101_microbe.par
J HSPF-PEST H 04030101_microbe.pst
Type
PAR File
Outlook Data File
>
Flow Q_, 04030101_microbe.rec
REC File
Microbe ~ 04030101 microbe, rei
RE File
huc12 [_, 04030101_microbe.res
J Local Data Ej [_, 04030101_microbe.rst
met [_, 04030101_microbe.sen
,Jj NHDPIus [_, 04030101_microbe.seo
» NLCD [_, 04030101_microbe.tpl
» NWIS a 04030101_microbe.uci
RES File
RST File
SEN File
SEO File
TPL File
UCI File
pes 4 | m
~
4
0403010l_microbe.rec Date modified; 7/18/2017 3:28 PM Date created: 7/17/2017 11:31 AM
REC File Size: 42.2 KB
1 item selected
Computer
132
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222. Open "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-
PEST\Microbe\04030101_microbe.rec' with a text editor to view the results. In this example,
microbial parameter calibration results are summarized in "OPTIMISATION RESULTS" which
contains calibrated parameter values under "Estimated value", followed by iterative comparisons
of flow calculations with observations (see "Observations >").
Par ameter
Esti mated
95% percent confidence limits
val lie
lower limit
upper limit
accum_ratel
22.2488
2
.33279
212.196
wsqopl
6.291682E-02
-6.
116108E-02
0.186995
fstdec
2.00000
-1
.57723
5.57723
thfst
1.00000
0.
643323
1.35668
data_rate
5.121392E-Q3
3.
046919E-04
8.608258E-02
Note: confidence
limits provide only
an indication of parameter uncer
tai nty.
They rely
on a linearity assumption which
may not extend as
far i n
parameter
space as the confidence limits themselves - see pest
manual.
see file Q4030101_microbe. sen for
parameter sensitivities.
Observations
—>
observati on
Measured
cal cul ated
Resi dual
wei qht
Group
val ue
value
obs_l
210.000
10545.4
-10335.4
1
.000
obs009
obs_2
1080.00
24227.6
-23147.6
1
000
obs009
|obs_3
50000.0
87266.6
-37266.6
1
000
obs009
obs_4
30000.0
152858.
-122858.
1
.000
obs009
obs_5
29000.0
9890.05
19109. 9
1
.000
obs009
obs_6
96000.0
35051.7
60948.3
1
.000
obs009
obs_7
44000.0
7788.52
36211.5
1
.000
obsoog
obs_8
2200.00
6967.96
-4767.96
1
000
Obs009
obs_9
1030.00
7770.35
-6740.35
1
.000
obs009
obs_10
880.000
16498.1
-15618.1
1
.000
obs009
obs_ll
370.000
9272.65
-8902.65
1
.000
obs009
obs_12
72000.0
9687.90
62312.1
1
.000
obs009
obs_13
4400.00
10142.6
-5742.57
1
000
obs009
obs_14
83000.0
10563.1
72436.9
1
000
obs009
obs_15
190000.
59605. 9
130394.
1
.000
obs009
obs_16
1230.00
20474.1
-19244.1
1
.000
obs009
obs_17
2300.00
11968.8
-9668.76
1
.000
obs009
obs_18
1610.00
10320.7
-8710.69
1
000
obs009
1 obs_19
960.000
9495.15
-8535.15
1
000
obs009
obs_20
7550.00
6884.33
665.670
1
.000
obs009
obs_21
5400. 00
7156.18
-1756.18
1
.000
obs009
obs_22
2123.00
7820.87
-5697.87
1
.000
obs009
obs_23
6133.00
3654.63
2478.37
1
000
obs009
obs_24
3100.00
1359.18
1740.82
1
000
obs009
obs_25
60000.0
9913.38
50086.6
1
.000
obs009
obs_26
84000.0
10700.3
73299. 7
1
.000
obs009
obs_27
70000.0
13221.3
56778.7
1
.000
obs009
obs_28
32000. 0
16827.7
15172.3
1
000
obs009
obs_29
35000.0
23682.1
11317.9
1
000
obs009
, obs_30
18000.0
38495. 6
-20495. 6
1
.000
obs009
1 obs_31
54000.0
9608.99
44391.0
1
.000
obs009
obs_32
39000.0
13051.6
25948.4
1
.000
obsQ09
obs_33
43000.0
10955. 2
32044.8
1. 000
obs009
obs_34
37000.0
13865. 6
23134.4
1
000
obs009
obs_35
27000.0
18733.5
8266.51
1
.000
obs009
[ obs_36
23000.0
23873.3
-873.290
1
.000
obs009
obs_37
23000.0
32879. 8
-9879. 79
1
.000
obs009
obs_38
19000.0
79043.4
-60043.4
1. 000
obs009
obs_39
70000.0
77966.6
-7966. 60
1
000
obs009
obs_40
20000.0
12331.6
7668.39
1
.000
obs009
. obs_41
249000.
155293.
93707.0
1
.000
obs009
133
-------
223. Statistics between calculations and observations are listed in "Objective Function >" and
"Correlation coefficient —>", as illustrated in the figure below. The sum of squared weighted
residuals is a measure of discrepancy between the data and an estimation model. The correlation
coefficient ("r") is a statistical measure of degree in change of one parameter because of change in
another. When done, close the file.
Objective function >
Sum of squared weighted residuals (ie phi)
= 7.8496E+1Q
Correlation Coefficient >
Correlation coefficient
0.54600
Analysis of residuals >
All residuals:-
Number of residuals with non-zero weight
Mean value of non-zero weighted residuals
Maximum weighted residual [observation "obs_15"]
Minimum weighted residual [observation "obs_4"]
Standard variance of weighted residuals
standard error of weighted residuals
41
1.0728E+04
1.3039E+05
-1.2286E+05
2.1804E+09
4.6695E+04
Note: the above variance was obtained by dividing the objective
function by the number of system degrees of freedom (ie. number of
observations with non-zero weight plus number of prior information
articles with non-zero weight minus the number of adjustable parameters.)
If the degrees of freedom is negative the divisor becomes
the number of observations with non-zero weight plus the number of
prior information items with non-zero weight.
K-L information statistics >
AIC
AICC =
BIC
KIC
888.2824
890.7530
898.5639
884.6255
©
parameter covariance matrix >
134
-------
SECTIONS
VISUAUZAT1NG HSPF MICROBIAL CALIBRATION AND SIMULATION RESULTS
VIEWING OUTPUT FILES OF THE MICROBIAL CALIBRATION RESULTS
With the final execution of HSPF using PEST, the HSPF UCI file (04030101_microbe.uci) located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe" includes final values
or calibrated parameters.
File Edit
Organize » Edit » Share with »
Burn
HSPF-PEST_1
EPAWaters
. HSPF
HSPF-PEST
Flow
Microbe
hucl2
LocalData
met
NHDPIus
NLCD
NWK
pes
HI
New folder §EE »
Name
04030101jnicrobe,pst
I ii 04030101_microbe,rec
|~1 04030101_microbe,rei
Pi 04030101_microbe.res
II 04030101_microbe,rst
n 04030101_microbe,sen
f~l 04Q30101_microbe,seo
fl 04030101_microbe,tpl
a @
a 04030101 microbe,uci
[J] 04030101_microbe_009,ins
jffI 04030101_microbe_echo.out
1 Si I
04030101_microbe.uci Date modified: 7/18/2017 3:27 PM
UCI File Size: 127 KB
1 item selected
Computer
Calibration values in the PEST output file (04030101_microbe.rec) are not final because results differ
slightly due to the monthly variability of some parameters, although the statistics (e.g., correlation
coefficient) repotted are valid and reflect calibration. This section illustrates how to view calibration
results using a text editor or from within WinHSPF.
View Microbial Results Using a Text Editor
Appendix D documents the HSPF microbial parameters that were varied in the calibration process,
including ACQOP (MON-ACCUM in case of monthly variable), WSQOP, FSTDEC, THFST, and MONTH-
DATA. This section reviews their location and values in the UCI file "04030101_microbe.uci". For details
about the HSPF UCI file, see Bicknell et al, (2005) or "C:\BASINS45\docs\HSPF.chm".
135
-------
224. Open "04030101_microbe.uci" with a text editor.
File Edit View Tools Help
Organize ~ Edit ~ Share with » Burn
New folder
§= - a ®
EPAWaters *
Name
Type
>
HSPF
04030101_microbe.log
Text Document
HSPF-PEST
04030101_microbe_obs_009.txt
Text Document
Flow
[7°1 04030101_microbe.tpl
TPL File
Microbe
04030101_microbe_P2P.tpl
TPL File
hucl2
0^ 04030101Jlow.uci
UCI File
LocalData
,8', 04030101_microbe.uci
UCI File
JO met
g 04030101 .wdm
WDM File
1
Jii NHDPIus
[U"! met.wdm
WDM File
H NLCD
runHSPF.bat
Windows Batch File
Jti NWIS
runPEST.bat
Windows Batch File
1
J4 PCS T 4
1 ffi 1
~
-tf 04030101JTlicrobe.uri Date modified: 7/18/2017 3:27 PM Date created: 7/18/2017 12:06 PM
M(E]| HQ File Size: 127 KB
1 item selected
—
Computer
136
-------
225. Go to "MONTH-DATA" where calibrated monthly parameter values are found. This section
documents combined monthly point source loads from direct instream cattle shedding ("cattle in
stream)" and "leaky septics" in Counts/d. Each month is designated by the sequence across the
row. "MONTH-DATA 1", "MONTH-DATA 2",..., indicate data from different subwatersheds.
Home
Q *cut
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Courier New T
11
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A* a'
B I U afee X2
Xs
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Font
:= ' 1=-
— +—
Paragraph
Picture Paint Date and Insert
» drawing time object
Insert
3Q Find
Replace
[~] Select all
Editing
MONTH-DATA
MONTH-DATA 1
*** atmospheric dry deposition fluxes
*** used to input loads from cattle in stream and leaky 3eptics (counts/day)
|ji15EB6i15E86i15Eai6i15Ea6i15EB61i5E9Gli5E361i5E9ei15EB6i15E86i15Eai6i15E^
END MONTH-DATA 1
MONTH-DATA 2
*** atmospheric dry deposition fluxes
*•** used to input loads from cattle in 3tream and leaky 3eptics (counts/day)
|^i£9E81i3£E8^iB3Ea^i82ES^iai9Ea24^lE924^lE924ilE91iaiS|miai5Eaiia3Ea^i89E^
END MONTH-DATA 2
~
MONTH-DATA 3
*** atmospheric dry deposition fluxes
*** used to input loads from cattle in stream and leaky septics (counts/day)
***
l_
5SE83.5aE83.58E83.58E83.5 8Efll9.5E319.5E913.5E93.50ES3.5aES3.58E83.5aEa
END MONTH-DATA
MONTH-DATA 4
atmospheric dry deposition fluxes
*** used to input loads from cattle in stream and leaky septics (counts/day)
|^^3E8^^3E8^^3E8^^3E8^^3Ea^^3ES^T3E8^^3EB^T3E8^^3E8^^3Ea^^3E^J
ffwn WWHHH — nTNTTV
100% ©
-0-
©
137
-------
226. Go to "QUAL-INPUT" in "PERLND" (pervious land), where calibrated parameter value of
"WSQOP" is found. Note that "IOQC" and "AOQC" are not calibrated and assumed as "0".
t 04030101_microbe.uci - WordPad
1
~
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& Cut
Ej|| Copy
View
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#
11
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B I U a** X, x1
Font
A" a'
a- m
m:= T
Paragraph
. . . 4 . .
3% Find
5S, Replace
Picture Paint Date and Insert ,
drawing time object I9iSe|ect a"
Insert ' Editing
END QUAL-PROPS
QUAL-INPUT
Storage
on surface and
nonseasonal pai
ameters
***
SQO
POTFW
POTFS
&CQOP
SQOU1
WSQOP
IOQC
&OQC
***
qty/ac
qty/ton
qty/ton
qty/
qty/a<
in/hr
qty/ft3
qty/ft3
*** x - X
ac.day
101
0
0
0
10000
10000*
.0629168
0
0
102
0
0
0
10000
100001
.0623168
0
0
103
0
0
0
10000
100001
.0623168
0
0
104
0
0
0
10000
10000<
.0623168
0
0
105
0
0
0
10000
100001
.0623168
0
0
106
0
0
0
10000
10000<
.0623168
0
0
107
0
0
0
10000
10000<
.0623168
0
0
108
0
0
0
10000
100001
.0623168
0
0
201
0
0
0
10000
100001
.0623168
0
0
202
0
0
0
10000
100001
.0623168
0
0
203
0
0
0
10000
100001
.0623168
0
0
204
0
0
0
10000
100001
.0623168
0
0
205
0
0
0
10000
10000<
.0623168
0
0
206
0
0
0
10000
10000(
.0623168
0
0
207
0
0
0
10000
100001
.0623168
0
0
208
0
0
0
10000
100001
.0623168
0
0
301
0
0
0
10000
100001
.0629168
0
0
302
0
0
0
10000
100001
.0623168
0
0
304
0
0
0
10000
100001
.0623168
0
0
305
0
0
0
10000
100001
.0623168
0
0
306
0
0
0
10000
10000<
.0623168
0
0
307
0
0
0
10000
100001
.0623168
0
0
308
0
0
0
10000
100001
.0623168
0
0
401
0
0
0
10000
10000<
.0629168
0
0
402
0
0
0
10000
100001
.0629168
0
0
403
0
0
0
10000
100001
.0629168
0
0
404
0
0
0
10000
100001
.0629168
0
0
405
0
0
0
10000
100001
.0629168
0
0
406
0
0
0
10000
100001
.0623168
0
0
407
0
0
0
10000
100001
.0623168
0
0
408
0
0
0
10000
100001
.0629168
0
0
501
0
0
0
10000
10000<
.0629168
0
0
502
0
0
0
10000
100001
.0629168
0
0
503
0
0
0
10000
100001
.0629168
0
0
504
0
0
0
10000
100001
.0629168
0
0
505
0
0
0
10000
10000<
.0629168
0
0
506
0
0
0
1 0000
1 OOOOf
.062916ft
0
0
138
-------
227. Go to "MON-ACCUM" in "PERLND" (pervious land), where monthly calibrated parameter values
of "ACQ.OP" ( "MON-ACCUM") are found.
~
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"IIA K\
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= ^ Picture Paint Date and Insert
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& Replace
[~] Select all
Editing
IT
END QUA1-INPUT
104
W Value
x JAN
0.0000.
> Value
x JAN
1.9E81.
> Value
x JAN
0.0000.
> Value
x JAN
1.5E91
> Value
x JAN
0.0000.
> Value
x JAN
1.5E91.
> Value
x JAN
0.0000.
> Value
x JAN
1.5E91.
> Value
x JAN
0.0000.
> Value
x JAN
1.9E81.
> Value
x JAN
0.0000.
> Value
x JAN
1.5E91.
> Value
x JAN
0.0000
> Value
x tTAN
at 3tart
FEB MAR
0000.0000
at start
FEB MAR
9ES1.9E81
at start
FEB MAR
0000.0000
at start
FEB MAR
5E91.5E91
at start
FEB MAR
0000.0000
at start
FEB MAR
5E91.5E91
at start
FEB MAR
0000.0000
at start
FEB MAR
5E91.5E92
at start
FEB MAR
0000.0000
at start
FEB MAR
9E81.9E81
at start
FEB MAR
0000.0000
at start
FEB MAR
5E91.5E91
at start
FEB MAR
0000.0000
at start
FEB MAR
of each month
APR MAY JXJN
.0000.0000.0000
of each month
APR MAY JXJN
.9E81.9E81.9E81
of each month
APR MAY JUN
.0000.0000.0000
of each month
APR MAY JUN
¦5E91.5E91.5E91
of each month
APR MAY JUN
.0000.0000.0000
of each month
APR MAY JUN
.E112.E112.E111
of each month
APR MAY JUN
.0000.0000.0000
of each month
APR MAY JUN
.E114.E114.E112
of each month
APR MAY JUN
.0000.0000.0000
of each month
APR MAY JUN
. 9E81-9E81.9E81
of each month
APR MAY JUN
.0000.0000.0000
of each month
APR MAY JUN
.5E91.5E91.5E91
of each month
APR MAY JUN
.0000.0000.0000
of each month
APR MAY JTTN
fo^^acc^^^r^t^^o^T^^Ko^^^^bTa^^day^
JUL AUG SEP OCT NOV DEC
.0000.0000.0000.0000.0000.000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
9E81.9E81.9E81.9E81.9E81.9E8
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.0000.0000.0000.0000.0000.000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
5E91.5E91.5E91.5E91.5E91.5E9
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.0000.0000.0000.0000.0000.000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.E118.E104.E104.E101.5E91.5E9
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.0000.0000.0000.0000.0000.000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.E112.E112.E112.Elll.5E91.5E9
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
0000.0000.0000.0000.0000.000
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.9E81.9E81.9E81.9E81.9E81.9E8
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
0000.0000.0000.0000.0000.000
for accum rate of QUAILOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
.5E91.5E91.5E91.5E91.5E91.5E9
for accum rate of QUALOF (lb/ac.day)
JUL AUG SEP OCT NOV DEC
0000.0000.0000.0000.0000.000
for accum rate of QUALOF (lb/ac.day)
JUT. AUG SF.F OCT NOV DEC
¦51-
139
-------
228. Go to "QUAL-INPUT" in "IMPLND" (impervious land), where calibrated parameter values of
"ACQOP", "SQOLIM", and "WSQOP" are found. Because these are impervious areas, "ACQOP" and
"SQOLIM" in "IMPLND" do not vary by month.
Home View
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Editing '
' 5 A
END QUAL-PROPS
QUAL-INPUT
J, J, J,
Storag
SQO
* + *
qty/ac
I""* X - X
102
0
103
0
104
0
105
0
106
0
107
0
108
0
201
0
202
0
203
0
204
0
205
0
206
0
207
0
208
0
301
0
302
0
304
0
305
0
306
0
307
0
308
0
401
0
402:
0
403
0
404
0
405
0
406
0
407
0
408
0
501
0
502
0
503
0
504
0
505
0
506
0
on surface and
POTF1
qty/to
< L
iiQiiseagonal parameters
ACQOP
qty/
ac.day
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82,
9170E82.
9170E82,
9170E82.
3170EB2.
3170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
3170E82,
9170E82,
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170E82.
9170EB2,
9170E82.
9170E82.
91 70P.R2 .
3QOI.IM
qty/ac
6343E9.
6343E9.
6343E9.
6343E9.
6343E9.
6343E9.
G343E9.
6343E9.
6343E9.
6343E9.
6343ES.
G343E9.
6343E9.
6343E9.
6343E9.
6343E9.
6343E9.
G343E9.
G343E9.
G343E9.
G343E9.
G343E9.
6343E9.
6343E9.
6343E9.
6343E9.
6343E9.
6343E9.
G343E9.
G343E9.
G343E9.
G343E9.
6343E9.
G343E9.
6343E9.
6343F9.
WSQOP
in/hr
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
0629168
062 9168
0629168
0 62 916 8
100% © ¦-
-0-
©
140
-------
229. Go to "GQ-GENDECAY" in "RCHRES" (reaches), where calibrated parameter values of "FSTDEC"
and "THFST" are found.
» ! 04030101_microbe.uci - WordPad J
Home View
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END GQ-QALFG
RCHRES FSTDEC THFST
Ix - x (/day)
1 92.000000001.00000000
END GQ-GENDECAY
END RCHRES
FTABLES
FTABLE
rows cols
8 4
depth
0.0
0.41
4.06
area
461.8
465.03
494.06
volume outflow!
0
188.34
1942.38
0
28.18
1301.78
100% ©
-o-
© ,
230. Close the text editor.
View Microbial Results Using a WinHSPF
The WinHSPF user interface can also be used to view values assigned to calibrated parameter values.
231. Double-click (left) on the icon to execute the WiriHSPF. If the icon cannot be found on the
Desktop screen, locate the executable on the hard drive (WinHSPF.exe), typically in
\BASINS45\models\WinHSPF30\bin\.
~ Computer ~ OSDisk(CO ~ BASINS45 ~ models ~ WinHSPFBO ~ bin ~
X '
File Edit View Tools
Help
Organize ~ [2±S] Open
Burn New folder
H - a ®
BASIN S45
*
Name
Date modified
Type
*
bin
data
docs
etc
models
GWLF-E
Jii HSPF
WinHSPF30
0
starter
l~~l HspfEngineNet.exe
ufl StatusMonitor.exe
2/13/2017 10:23 AM
12/17/20124:33 PM
12/17/20124:26 PM
File folder
Application
Application
-
14 WinHSPF.exe
9/10/2015 3:34 PM
Application
j^j atcControls.dll
[Cj atcData.dll
\%i atcFtableBuilder.dll
[%j atcSegmentation.dll
11/18/20141:41 PM
n/18/20141:41 PM
1/8/2015 3:33 PM
11/18/20141:41 PM
Application extens.,.
Application extens...
Application extens...
Application extens...
bin
-
logs
- <
1
!fl
>
WinHSPF.exe Date modified: 9/10/2015 3:34 PM
Date created: 2/13/201710:23 AM
Application
Size: 559 KB
1 item selected
| Computer
141
-------
232. The following WinHSPF window appears.
233. Select "Fi!e>Open".
WS Hydrological Simulation Program - Fortran (h
File
Edit Functions Help ~ 1
I Q_Open
Close
Save
li Save As...
¦ Exit
II *
234. Browse "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\iVlicrobe\",
choose "04030101_microbe.uci", and click "Open".
Locate UQ file to open
ED ^1 « HSPF-PEST ~ Microbe
Is^sT
Search Microbe
Organize ~ New folder
. EPAWaters
M hspf
HSPF-PEST
. Flow
. Daily
Microbe
1^ hud2
. Local Data
met
NHDPIus
. NLCD
NWIS
pes
Name
j ^ 04030101_microbe.uci
IS) 04030101 flow.uci
i
040301Ql_microbe.uci Date modified: 7/18/2017 3:27 PM
UCI File Size: 127 KB
a ®
Date n ?
7/18/2
7/14/2
Filename: 04030101 microbe.uci
UCI files f.uci)
Open
Cancel
142
-------
235. The HSPF Manitowoc River Basin workflow appears. The WinHSPF Ul shows linkages of the
subwatersheds and reaches, proportions of land use type in each, etc. Details about WinHSPF Ul
can be found in WinHSPF Manual, typically located in "\BASINS45\docs\WinHspf30.chm".
236. Select "Functions>lnput Data Editor" or click in the tool bar to view the calibrated HSPF
microbial parameters.
Hydrological Simulation Program - Fortran (HSPF): Q4030101_flow.uci
Edit
Functions
Help
J i3 A
Reach Editor
Simulation Time and Met Data
Land Use Editor
'OlIULdl IL junction
Point Source Editor
Output Manager
©
A
RCHRE38
i
143
-------
237. The following "Input Data Editor" window appears. Only bolded sections have records in the UCI
file. For example, "FORMATS" does not contain data, but "FTABLES" does.
WinHSPF - Input Data Edito
GLOBAL
OPN SEQUENCE
FTABLES
EXT SOURCES
FORMATS
NETWORK
EXT TARGETS
SPEC-ACTIONS
SCHEMATIC
MASS-LINK
- PERLND
m IMPLND
m RCHRES
COPY
111 PLTGEN
E0- D IS PLY
Close
238. Expand "PERLND" by clicking "+" at the left.
a
WinHSPF - Input Data Editoi
GLOBAL
OPN SEQUENCE
FTABLES
EXT SOURCES
FORMATS
NETWORK
EXT TARGETS
SPEC-ACTIONS
SCHEMATIC
MASS-LINK
*+i PERLND
m - IMPLND
|i] RCHRES
m- copy
|j- PLTGEN
[j-DISPLY
Close
144
-------
239. Subsections in "PERLND" composed of the following records are expanded: "GENERAL",
"ATEMP", "SNOW", "PWATER", "PSTEMP", and "PQUAL".
^WinHSPF - Input Data E..
SCHEMATIC
I- MASS-LINK
PERLND
m GENERAL
[j ATEMP
ii SNOW
ffl- PWATER
0 SEDMNT
m PSTEMP
|j-PWTGAS
(j PQUAL
(j- MSTLAY
0 PEST
IS-NITR
|j PHOS
1 TRACER
Close
240. Expand "PQUAL".
HwinHSPF - Input Data E.„
HI PSTEMP
[j PWTGAS
-i PQUAL
NQUALS
PQL-AD-FLAGS
QUAL-PROPS
QUAL-INPUT
MON-POTFW
MON-POTFS
MON-ACCUM
MON-SQOLIM
MON-IFLW-CONC
MON-GRND-CONC
ffl MSTLAY
jl-PEST
a-NITR
Close
145
-------
241. In the "Input Data Editor" window, double-click (left) on "QUAL-INPUT", under "PQUAL", to view
calibrated parameter values of "WSQOP", "IOQC", and "AOQC". Click "OK" to close.
H Edit Table PERLND:QUAL-INPUT
17 Show description Occurrence 11 - Microbe
~3
OpNum Description
SQO POTFW POTFS ACQOP SQOLIM
WSQOP IOQC AOQC
101
Water/Wetl a nds
0
0
0
10000
10000D
.0629163
0
0
102
Urban
0
0
0
10000
10000D
.0629160
0
0
103
Barren or Mining
0
0
0
10000
10000D
.0629168
0
0
104
Forest
0
0
0
10000
100000
.0629168
0
0
105
Upland Shrub Land
0
0
0
10000
100000
.0629168
0
0
106
Agriculture-Cropla
0
0
0
10000
100000
.0629168
0
0
107
Grass Land
0
0
0
1000D
100000
.0629168
0
0
10S
Agriculture - Pastur
0
0
0
10000
10000D
.0629168
0
0
201
Water/Wetlands
0
0
0
10000
100000
.0629168
0
0
202
Urban
0
0
0
10000
100000
.0629168
0
0
203
Barren or Mining
0
0
0
1DOQ0
10000D
.0629168
0
0
204
Forest
0
0
0
10000
100000
.0629168
0
0
205
Upland Shrub Land
0
0
0
10000
100000
.0629168
0
0
206
Agriculture -Cropla
0
0
0
10000
100000
.0629168
0
0
207
Grass Land
0
0
0
10000
10000D
.0629168
0
0
208
.Agriculture - Pastur
0
0
0
10000
100000
.0629168
0
0
301
WaterAVetlands
0
0
0
1000D
100000
.0629168
0
0
302
Urban
0
0
0
1D000
10000D
.0629168
0
0
304
Forest
0
0
0
10000
100000
.0629168
0
0
305
Upland Shrub Land
0
0
0
10000
100000
.0629168
0
0
306
Agriculture - Cropla
0
0
0
10000
100000
.0629168
0
0
307
Grass Land
0
0
0
10000
100000
.0629168
0
0
30S
Agriculture - Pastur
0
0
0
10000
10000D
.0629168
0
0
401
WaterAVetlands
0
0
0
10000
100000
.0629168
0
0
402
Urban
0
0
0
10000
10000D
.0629168
0
0
403
Barren or Mining
0
0
0
1000D
100000
.0629168
0
0
404
Forest
0
0
0
10000
10000D
.0629168
0
0
405
Upland Shrub Land
0
0
0
10000
10000D
.0629168
0
0
- <- >
fiAAA-t rn
Table: QUAL-INPUT, Storage on surrace and nonseasonal parameter values for section
This table should be repeated for each quality constituent.
Storage on surface and nonseasonal parameters
SQO POTFW POTFS ACQOP SQOLIM WSQOP
IOQC
AOQC
OK
Cancel
Apply
Help
A
146
-------
242. In the "Input Data Editor" window, double-click (left) on "MON-ACCUM" to view monthly
calibrated parameter values of "ACQOP" ( "MON-ACCUM"). Click "OK" to close.
I? Show description Occurrence 11 - Microbe
"3
OpNum
Description
QUAJAN IQUAFEB
QUAM.AR | QUAAPR
|QUAMAY
Iquajun
|quajul|quaaug
QUASEP | QUADCT | QUANOV
QUAD EC
101
Water-Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
102
Urban
1.9e8
1.9eS
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9eS
1.9e8
1.9e8
103
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
104
Forest
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
105
Upland Shrub Land
0
0
D
0
0
0
D
0
0
0
0
0
106
Agriculture - Cropla
1.5e9
1.5e9
1.5e9
1E+11
2E+11
2E+11
1E+111
SE+10
4E+10
4E+10
1.5e9
1.5e9
107
Grass Land
0
0
0
0
0
0
D
0
0
0
0
0
108
Agriculture - Pastur
1.5e9
1.5e9
1.5e9
2E+11
4E+11
4E+11
2E+11
2E+11
2E+11
2E+11
1.5e9
1.5e9
201
Water,'Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
202
Urban
1.9e8
1.9eB
1.9eB
1.9eS
1.9eS
1.9e8
1.9eB
1.9e8
1.9eS
1.9eS
1.9e8
1.9e8
203
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
204
Forest
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
205
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
206
Agriculture - Cropla
1.5e9
1.5e9
1.5e9
2E+11
2E+11
2E+11
2E+11
1E+11
5E+10
5E+10
1.5e9
1.5e9
207
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
208
Agriculture - Pastur
1.5e9
1.5e9
1.5e9
4E+11
7E+11
4E+11
4E+11I
4E+11
4E+11
4E+11
1.5e9
1.5e9
301
WaterA'tetlands
0
0
0
0
0
0
0
0
0
0
0
0
302
Urban
1.9eS
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9eS
1.9eB
1.9e8
1.9e8
304
Forest
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
305
Upland Shrub Land
0
0
0
0
0
0
0
0
0
0
0
0
306
Agriculture - Cropla
1.5e9
1.5e9
1.5e9
4E+10
7E+10
5E+10
4E+10
3E+10
1E+10
1E+10
1.5e9
1.5e9
307
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
308
Agriculture - Pastur
1.5e9
1.5e9
1.5e9
SE+10
1E+11
SE+10
7E+10
SE+10
SE+10
SE+10
1.5e9
1.5e9
401
WatenWetlands
0
0
0
0
0
0
0
0
0
0
0
0
402
Urban
1.9e8
1.9eS
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9e8
1.9eS
1.9eS
1.9eS
1.9eS
403
Barren or Mining
0
0
0
0
0
0
0
0
0
0
0
0
404
Forest
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
1.5e9
405
Upland Shrub Land
0
0
D
0
0
0
D
0
0
0
0
0
406
Agriculture - Cropla
1.5e9
1.5e9
1.5e9
1E+11
2E+11
2E+11
1E+11
SE+10
4E+10
4E+10
1.5e9
1.5e9
407
Grass Land
0
0
0
0
0
0
0
0
0
0
0
0
408
Agriculture - Pastur
1.5e9
1.5e9
1.5e9
2E+11
2E+11
2E+11
2E+11
2E+11
1E+11
1E+11
1.5e9
1.5e9
501
Water-Wetlands
0
0
0
0
0
0
0
0
0
0
0
0
RTi?
I I rkan
1 QaH
1 CiaQ
1 o=5!
1 QaH
1 QaH
1 QoS
1 QaQ
1 UaEJ
1
1
1
1 QoO
Table: MON-ACCUM, Moi
required if VQOFG in
ithly
Table
values of accumulation rate of QUALOF at
-type QUAL—PROPS is 1. This table should
start of each month,
be repeated for each
This table is only
quality constituent.
*** Value at
*** x - x JAN FSB
start
MAR
of each month
APR MAY JU1J
for accum
JUL AUG
rate of QUALOF
SEP OCT NOV
lb/ac
DEC
day!
OK
Cancel
Apply
Help
147
-------
243. In the "Input Data Editor" window, first expand "IMPLND", then expand "IQUAL".
B
WinHSPF - Input Data EL.
1+1- TRACER
B IMPLND
R1 GENERAL
[+] ATEMP
S SNOW
[+ IWATFR
i SOLIDS
IWTGAS
- IQUAL
NQUALS
IQL-AD-FLAGS
QUAL-PROPS
QUAL-INPUT
MON-POTFW
MON-ACCUM
MON-SQOLIM
Close
244. in the "Input Data Editor" window, double-click (left) on "QUAL-INPUT" to view calibrated
parameter values of "ACQOP", "SqOLIM", and "WSQOP". Click "OK" to close.
Edit Table JMPLND:QUAL-IMPUT
JsU
W Show description Occurrence |l- Microbe
~ pNurri
Description
SQQ POTFW
ACQOP
SQOLIM
WSQOP
102
202
302
402
502
602
702
802
902
Urban
Urban
Urban
Urban
Urban
Urban
Urban
Urban
Urban
1.917eS
1.917eS
1.917eS
1.917e8
1.917e8
1.917e8
1.917e8
1.917e8
1.917eS
2.634e9
2.634e9
2.634e9
2.634e9
2.634e9
2.634e9
2.634e9
2.634e9
2.634e9
.0629168
.0629168
.0629168
.0629168
.D629168
.0629168
.0629168
.0629168
.0629168
Table: QUAL-INPUT, Storage en surface and nonseasonal parameters for
IQUAL (IMPLND) This table is repeated for each quality constituent.
Jr J,
Jr * Jr
Storage on surface and nonaeaaonal parairietera
SQO POTFW ACQOP SQOLIM WSQOP
OK
Cancel
Apply
Help
A
148
-------
245. In the "Input Data Editor" window, double-click (left) on "MONTH- DATA" to view calibrated
parameter values of "MONTH-DATA". Click "OK" to close.
Edit Month Data
149
-------
REGISTERING CALIBRATED SIMULATION RESULTS AND OBSERVATIONS WITH BASINS
HSPF microbial calibrated and uncalibrated simulation results with observations will be imported into
BASINS for viewing and comparison. This section describes how to register simulation and observation
time series results of microbial concentrations with BASINS, which will be used as the viewer.
246. Execute BASINS with the BASINS icon. When "Welcome to BASINS 4.5" appears, click
"Manitowoc" to open the BASINS project generated by SDMPB.
|| Welcome to BASINS 4.5
I—&¦!!
W\ Show this dialog at startup
Close
Build New Project
View Documentation
Open Existing Project
HSPF-PEST
Pour Paint
247. The following map layers appear in the BASINS Ul.
4.1 - Manitowoc*]
File * Watershed Delineation •. * Models til Compute
(D £ £i =¦ • .La
New Open Save Print Settings
~ P ia /i iQ
Pan In Out Extent Selected Previous Next Layer
Legend
Layers j Toolbox j
B 0 L& Observed Data Stations
|B0 NWIS Daily Discharge Stations
~ 0 L.5 Point Sources and Withdrawals
ED Permit Compliance System •>$> ~
S0 NLDAS Grid Center ~
0D Output Points ^ ~
0O Septic ~
ED Animals ^ ~
00 Point Sources ^ ~
0D Bacteria *
00 Reach File. V1 ^ —
0D NAWQA Study Area Unit Boundarie
ED Accountina Unit Boundaries ^
00 Cataloaina Unit Boundaries
0D County Names
0D County Boundaries
0D EPA Reaion Boundaries
00 State Boundaries
Fin
-a a
Add Remove Clear
kS Analysis Layer View Bookmarks Plug-ins Shapefile Editor Converters Help
D
Preview Map
1 unnamed ~ X: 592,726.601 Y: 2,406,028.507 Meters | Lat 44.434 Long: -88.528
150
-------
248. Under "File", select "File>Manage Data".
File Watershed Delineation 1 Models Comput
New
ia Open Project
it Save
& Save As
4 Archive/Restore Project.
Download Data
Save Data In,.
_ Print
Recent Projects
: ^ L
Add Ren
& > iP
revious Next Layer
V x
~
s$> •
^ *
249. The "Data Sources" window below appears.
Data Sources
File Analysis Help
¦C:\Users\gwhelan\iemTechrK>logies''.SDMPB,.HSPF-PEST_1\nieftmet.wdm (63)
¦¦C:\Users\gA'helan\iemTechr>ologies'l.SDMPB'l.HSPF-PEST_1Wis\flow.wdm (1)
¦ C:\Users\gwhelan,'.iemTechnologies\SDMPB\HSPF-PEST_1\HSPFl04030101 .wdm (185]
¦ C:\Users'KjwtielaftoemTech nologies\SD M PB\H SPF- PEST_1 \HSPF-PEST'.F low''.D a i ly\Q4030101 vwfcn (135)
The "Data Source" window indicates that four time-series files have been registered.
C:\Users\gwhelan\iemTechnologies\SDMPB\FISPF-PEST_l\FISPF\04030101.wdm" contains
uncalibrated microbial simulation results.
Data stored in the "C:\Users\gwhelan\iemTechnologies\SDIVIPB\FISPF-PEST_l\HSPF-PEST\Microbe\"
folder have not been registered with BASINS, including calibrated microbial simulation results
("04030101.wdm") and microbial observations ("04030101_microbe_obs_009.txt"). We will register
the calibration results with BASINS.
151
-------
Register Calibrated Microbial Simulation Results
250. To import the calibrated microbial simulation results located in
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-
PEST\IVIicrobe\04030101.wdm", and select "File>Open".
Data Sources J
File Analysis Help
J _New_ Ctrl+N
c\met\met.
c\nwis\flow
c\NWIS\NV
c\NWIS\NV
LjQOpenJ} Ctrl+O
View File As Text
Show File Folder
Remove Data From File
n l t
251. The following "Select a Data Source" window appears. Select "WDM Time Series" by double-
clicking on it.
V ^ Select a Data Source
3 File
¦ Basins Observed Water Quality DBF
¦¦¦¦ CliGen Output
HSPF Binary Output
Integrated Surface Hourly Data
NASA GDS File
NOAA Hourly Precip Data, Archive Format, TD-3240
NOAA Summary of the Day, Archive Format TD-3200
¦¦¦¦ Read Data With Script
STORET Water Quality
SWAT Data Files
SWAT Output DBF
¦¦¦¦ SWMM Input
Timeseries DBF
Timeseries EXCEL
Timeseries SWMM5 Output
USGS RDB File
-WDM Time Series
WRDB Archive
152
-------
252. The following window appears. Browse and select
"C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-
PEST\Microbe\04030101.wdm", then click "Open".
Select WDM Time Series file to open
« HSPF-PEST ~ Microbe
~ J Search Microbe
Organize ~
New folder
EPAWaters
: HSPF
. HSPF-PEST
Flow
J* Daily
Microbe
§ hud.2
Local Data
met
NHDPIus
NLCD
NWIS
>. pes
m
Name
Iff. 04030101 .wdm
ST met.wdm
S
a m
Date n
7/18/2
6/30/2
w
04030lOl.wdm Date modified: 7/18/2017 3:28 PM
WDM File Size: 48,8 ME
Date created; 7/17/2017 8:27 AM
Filename: 04030101.wdm
t WDM Files (*.wdm)
Open
Cancel
253. "C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_l\HSPF-PEST\Microbe\04030101.wdm
(185)" appears in the "Data Sources" window.
Because the microbial observations are stored in "04030101_microbe_pbs_0Q9.txt", which is a text
file, a different method is required to import and register these data with BASINS.
153
-------
Register Microbial Observations
254. In "Data Sources" window, select "File>Open".
k*j| Data Sources
File
Analysis Help
~ J
Jew_ Ctrl+N
c\met\met.
LiC0PerO Ctrl+O
c\nwis\flow
1
View File As Text
Show File Folder
c\NWIS\NV
Remove Data From File
c\NW!S\NV
1 .i 1 r
, T._
255. The following "Select a Data Source" window appears. Select "Read Data With Script" by double-
clicking on it.
t'P Select a Data —1
~¦¦File
¦¦¦¦ Basins Observed Water Quality DBF
CliGen Output
- HSPF Binary Output
Integrated Surface Hourly Data
NASA GDS File
NOAA Hourly Precip Data. Archive Format TD-3240
NOAA Summary of the Day. Archive Format, TD-3200
Read Data With Script
STORET Water Quality
SWAT Data Files
SWAT Output DBF
¦ SWMM Input
Timeseries DBF
Timeseries EXCEL
Timeseries SWMM5 Output
USGS RDB File
WDM Time Series
WRDB Archive
154
-------
256. The following window appears.
a. Browse and select "04030101_microbe_obs_009.txt" in the
"C:\Users\gwhelan\iemTechnologies\SDIVIPB\HSPF-PEST_l\HSPF-PEST\Microbe\" folder,
b. Click "Open".
tJj Select data file to open
OQ<
« HSPF-PEST ~ Microbe
Search Microbe
Organize ~
New folder
m -
a i
EPAWaters
* Name
Dat
HSPF
[IT, 04030101_microbe_echo.out
7A:
HSPF-PEST
L , 04Q30101_microbe_P2P.tpl
7/1;
Flow
[£&] runHSPF.bat
7/i;
Microbe
IcCI runPEST.bat
7/i;
hud.2
f3! Input_microbe.in
7/1:
LocalData
|^~| [j Microbel.piz
7/1:
met
Pi Microbe.piz
7/i;
NHDPIus
[ffl| 04030101_flow.uci
l/i'
NLCD
[GCJ met.wdm
6/3i
NWIS
N "'1 HSPF_PEST_microbe.exe
6/1.
pes
i j 04030101_microbe_obs_009.txt
11/
UCI Modified Files ^ 4 1
04030101_microbe_obs_009.txt Date modified: 11/1/2016 4:29 PM
Text Document Size: 925 bytes
Any Data File (*.*) ~
Open
Cancel
257. The following window appears.
31 Script Selection for importing C:\lemp\SDMProject\Manitowoc\HSf?!
:-r'EST\Microbe\04030101_microbe_ob^^^y
Description | Script File
1 ! Run J
Blank Script
Edit
| Find... ]
Forget
I Help |
Cancel
258. Because "04030101_microbe_obs_009.txt" is a text file, a script is required to read it. Highlight
the first line under "Script File" column and click "Edit".
Script Selection for importing C:\Temp\SDMProject\Manitowoc\HSPF-PEST\Microbe\04030101 microbe obs.txt
1 Description | Script File
Run
1 Blank Script |
1 CeoiQ
Find... |
[ Forget ]
[ Help |
[^Cancel ]
155
-------
259. The "Script Creation Wizard" window appears. In "04030101_rnicrobe_obs_009.txt",
observation data starts from line 1, so no change at the "File Properties" tab is necessary. Select
the "Data Mapping" tab.
Script Creation Wizard
File Properties
Data Mapping
Data File: C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-PES" j Browse
Script File:
! Browse
Description: txtScriptDesc
Header
IS Skip
'0 None
C starts With #
0 Lines 1
Column Format
(0 Fixed Width
0 Tab Delimited
C Space Delimited
0 Custom: ,
Line Ending
f CR/LForCR
© LF
O ASCII Char: 13
Line Length: 30
1 2 3 4 5
123456789012345678901234567890123456789012345678901
20110604
10:15
210
20110609
10:25
1080
20110611
11:25
50000
20110616
10:43
30000
20110618
10:00
29000
20110623
09:42
96000
20110625
10:00
44000
20110630
10:07
2200
20110702
10:05
1030
20110707
10:03
880
20110709
10:15
370
oniinit a
i n ¦ n
Tinnn
< a
~
Save Script
Help
260. The following screen appears.
id Script Creation Wizard
File Properties j Data Mapping
Name
Value
Year
Month
pay
Minute
Attribute
Beg-End Column
Skip Values
Location
yes
yes
12345€7890123456789012345678901234567S9012345678901
20110604
10:15
210
20110609
10:25
1080
20110611
11:25
50000
20110616
10:43
30000
20110618
10:00
29000
20110623
09:42
96000
20110625
10:00
44000
20110630
10:07
2200
20110702
10:05
1030
20110707
10:03
880
20110709
10:15
370
on11 mi a
4 IZ1
i n • n
7innn
~
Save Script
Help
156
-------
261. At the "Data Mapping" tab,
a. use "Beg-End Column" to specify the location of the observation and its corresponding time
in the file.
b. fill out the rows, from "Value" to "Minute", with the values shown in the screen capture,
r
fjif Script Creation Wizard
File Properties Data Mapping
Name
Attribute
Beg-End Column
Consta nt Ski p Val ues
>
•w
Value
no
16-25
1-4
1900
Year
Month
no
5-6
Day
7-8
1
Hour
11-12
0
Minute
14-15
0
Scenario
yes
Location
yes
4 | rrr ^
1 2 3 4 5
12345678 9 012345678 9 012345678 9 012345 6(789012345 67 8 9 01
20110604 10:15 210
20110609
20110611
2:0110616
20110618
20110623
20110625
20110630
20110702
2:0110707
20110709
i mi a
*
10:25 1080
11:25 50000
10:43 30000
10:00 29000
09:42 96000
10:00 44000
10:07
10:05
10:03
10:15
2200
1030
880
370
m.n T>ririn
Read Data
Save Script
Help
Cancel
157
-------
262. Under the "Constant" column,
a. scroll down until items under the Name column start with "Scenario",
b. under the "Constant" column, record "Observed", "04085427", and "Enterococci" for
"Scenario", "Location", and "Constituent", respectively. These refer to the observed
enterococci densities at sampling location 04085427.
c. Click "Save Script", and save the script as C:\Users\gwhelan\iernTechnologies\SDMPB\HSPF-
PEST_l\HSPF-PEST\IVIicrobe\readtext_microbe_obs.ws" for future use.
d. Click "Read Data" on the "Script Creation Wizard" window.
|gf Script Creation Wizard
(D
File Properties Data Mapping
Name Attribute
Beg-End Column
Scenario
Location
stituent
Description
Repeating
Repeats
yes
yes
yes
yes
no
no
Constant
Observed
040S5427
Enterococci
Skip Values
123456739012345678901234567890123456739012345678901
20110604
10
15
210
20110609
10
25
1080
20110611
11
25
50000
20110616
10
43
30000
20110618
10
00
29000
20110623
0 9
42
96000
20110625
10
00
44000
20110630
10
07
2200
20110702
10
05
1030
20110707
10
03
880
20110709
10
15
370
Tm t mi a
t n
*7
7*>nn n
~
~
Read Data
Save Script
Help
Cancel
263. When the prompt below appears, click "OK".
Ran Import Data Script
ATCScript "txtScriptDesc"
Dataset Count = 1
OK
158
-------
264. "C:\Temp\SDMProject\IVIanitowoc\HSPF-PEST\Microbe\04030101_microbe_obs_009.txt (1)"
will appear in the "Data Sources" window.
yj Data Sources
File Analysis Help
B-WDM
C AUsers'vgwtielan\iemTechnolog ieslSD M PB'.H SPF- PEST_1 \mettmet.wdm (S3)
C:\Users\gwhelan\iemTech nologies\SDMPB\HSPF- PEST_1 ''.nwis'rflow.wdm (1)
C:\Users\gwheJarAiemTechnolog ies\SD M PB'-.H SPF- PEST_1 \HSPF\04030101 wdm (185)
¦C:\Users'l^whelan'l.iemTechnologies,|,SDMPB'l,HSPF-PEST_T,.HSPF-PEST'.FIow',.Daily'l.04030101 .wdm [1S5)
C:\Users\gwhe)an\iemTechnolog ies'SD M PB\H SPF - PEST_1 \H SPF- PEST'.Microbe\04030101 .wdm (185)
B-Script
^:\Users^belan\iemTechr>ologies\SDMPB\HSPF-PESTJI\HSPF-PESPMcrote\0403Q101_microbe_obs_0Q9.txt (
Timeseries::Script
C :\Users\gwhelanNjemTechnologies\S D M P B\HS P F-P EST_1 \H S P F-P ESTVMicrobe\04030101 _microbe_obs_003.txt
1 Timeseries
925 bytss
Modified 11/1/20164:29:54 PM
All necessary microbial concentration time series have been imported to the BASINS project to
compare microbial uncalibrated, calibrated simulations to observations.
265. Select "File>Exit" to close the "Data Sources" window, then "File>Save" in the BASINS.
Data Sources J
File Analysis Help
j (Mew Ctrl+N
0 Open Ctrl+O
c\met\metwdm
t:\nwis\flow.wdn
c\HSPF\Flow\D
c:\NWIS\NWIS_
c:\NWIS\NWIS_
View File As Text
Show File Folder
Remove Data From File
3 Save In... ~
Close Selected
Close All
c\HSPF\FIow\q
CixiT>
Timeseries::Script
r\Tf!mn\RnMPmifir:t\Manitnwnr.,|,HRPF\Flow\nailv\n4n,':i
159
-------
COMPARING HSPF MICROBIAL SIMULATION RESULTS BY PLOTTING MULTIPLE TIME SERIES
266. Select "Analysis>Graph".
Launch
-Analysis Layer View Bookmarks
Plug-ins
Shapel
1
Data Tree
lbology
n
DFLOW
E
~X Desei
Climate Assessment Tool
List
shp
Add Re
<
Graph)
Watershed Characterization Reports
Synoptic
w,«i
tr/-
Seasonal Attributes
Y
ufl
Reclassify Land Use
A
rs -
t
267. The following "Select Data To Graph" window appears.
if Select Data To Graph
File Attributes Select Help
Select tribute Values to Filter Available Data
Scenario
~ Location
04030101
NLDAS
OBSERVED
Observed
PT-OBS
04085427
IMP102
IMP202
IMP302
IMP402
Matching Data (620 of 620)
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
NLDAS
Selected Data (0)
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
X295Y153
~ Constituent
Time Unit
| Time Step
^ ATEM
U CLOU
DE"/P
QIAZINON
D'QAL
PREC
ATEM
WIND
SOLR
PEVT
DEVP
CLOU
WINDV
•* Unknown
O Hour
Day
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
1
Date Range of Selected Data
All Common
Start none none
End none none
~ Data Source
C:\Users\gwhelan
C:\Users\gwhelan
C:\Users'.gwhelan
C:\Users\gwhelan
C:\Users\gwhelan
Cf'JJsers'vgwhelan •*
C:\Users\gwhelan'—I
C:\Users'1,gv/helan
C AUserevgwhel an
CAUserslgwhelan
C:\Users\gwhelan
C:\Users'vgwhelan
Cf'.Users'^whelan -
~ Subset, Split, or Filter Selected Data
Ok
Cancel
Since the "Data Source" column should have been added when uncalibrated and calibrated flow
results with observations were plotted, it should not be necessary to add it again. [As a reminder,
"Add" was chosen under "Attributes", then "Data Source" for the new column.]
160
-------
268. As described in previous sections, the width of each column should be adjusted so the full path
of the data source can be viewed.
File Attributes Select Help
Select .Attribute Values to Filter Available Data
Scenario ~ I Location ~ j Constitue ~ I Time Ur ~ Time Step ~ | Data Source
04030101 04085427
NLDAS IMP102
OBSERVED IMP202
Observed IMP302
PT-OBS IMP402
Matching Data {620 of 620)
" ATEM * Unknown
IJ CLOU D Hour
DEWP Day
DIAZINOf
DQAL
NLDAS
X295Y153
PREC
Hour
NLDAS
X295Y153
ATEM
Hour
NLDAS
X295Y153
WIND
Hour
NLDAS
X295Y153
SOLR
Hour
NLDAS
X295Y153
PEVT
Hour
NLDAS
X295Y153
DEWP
Hour
NLDAS
X295Y153
CLOU
Hour
NLDAS
X295Y153
WINDV
Hour
Selected Data (0)
Date Range of Selected Data
All Common
Start none none
End none none
1 C:\Users \gwhelan''.iemTechnoIogies\SDMPBl,,HSPF-PEST_1\HSPF-PEST\Flow\Daily\0403Q101. wdm
C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PESTJ\HSPF-PEST.Microbe\04030101.wdrn
C:'i.Users',^whelan'|jemTechnologies'l.SDMPBi,HSPF-PEST_1\HSPF-PESTl.Microbe'i.04030T01_microbe_obs_009.txt
C:\Users'5whelan\iemTechnologies^DMP&HSPF-PESTJ\HSPF\04030101.wdm
C:\Users'',gwbelanl',iemTechnologies\SDMPB,lHSPF-PEST_1\rnet\rnet.wdm
3
C:l|.Users,|,gwbelan\iemTechnologies''.SDMPBl,HSPF-PEST_1\rriiet\met.wdm
C:\Users\gwbelan\iemT echnologies\SDM PB',HSPF-PEST_1 \met\met.wdm
C:\Users\gwbeian\iemT echnologies'SD M PB'.HSPF- PEST_1 \rnet\met.wdm
C:,',Users,|.gwhelan,'.iemTechnologieslSDMPBi,HSPF-PEST_T,met\met.wdm
C:\Users\gwhelari\iernTechnologies\SDMPBl,HSPF-PEST_1\rr>et,|,rnet.wdrn
C:\Users\gwhelan\iemTechnologies,|.SDMPBi,HSPF-PEST_T,met\rnet.wdm
C:\Users\gwhel3n'jernTechnologies'l.SDMPBl,HSPF-PEST_1\met\rnet.wdm
C:\ U s ers \gwhel a ruiemT echnologieslSDMPB',HSPF-PEST_1 \met\met.wdm
~
n Subset, Split, or Filter Selected Data
269. Under the "Constituent" column, observed data are denoted by "Enterococci", and uncalibrated
and calibrated simulation results are both denoted by "DQAL". Highlight "Enterococci" and "DQAL",
so they are displayed in "Matching Data".
Select Data To Graph
I File Attributes Select
Help
Select Attribute Values to Filter Available Data
Scenario ~ |
| Location
-
| Constituent
-
7 ime Unil ~
| Time Step ~ | | Data Source
-
04030101
04085427
DEWP
I^J Unknown
1 C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-PEST\Flow\D3ily\04030101.wdm
NLDAS
IMP102
~
DIAZINON
Hour
C:\Users\gwhelan'viemTechnologies',.SDMPB,.HSPF-PEST_Tl,HSPF-PESTi,Microbe\04030101. wd m
OBSERVED
IMP202
DQAL
¦
Day
C:\Users ,|lgv.,helan\iemTechnologies\SDMPBl,,HSPF-PEST_1\|-| SPF-PEST\Microbe\04030101_microbe_obs_009.txt
5
¦ Observed
IMP302
Enterococci
¦
C:\Users^helan\iemTechnologies\SDMPB^HSPF-PEST_1\HSPF\04030101.wdm
I PT-OBS
IMP402
FLOW
uirnnnrr
C:\Users',,g>vhelan'l,iemTechnologies\SDMPBi,HSPF-PEST_1\met\met.wdm
1 Matching Data (28 of 620)
04030101
RCH5
DQAL
Hour
1 C:\Users\gwhelan\iemTechnologies\SDMPB',HSPF-PEST_1\HSPF\04030101.wdm
04030101
RCH2
DQAL
Hour
1 C:\Users',lgvvhelan\iemTechnologies',SDMPBl.HSPF-PEST_1\HSPF\04030101 .wdm
04030101
RCH8
DQAL
Hour
1 C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF\04030101 .wdm
J
0403D101
RCH6
DQAL
Hour
1 C:\Users\gwbelan\iemTechriologies\SDMPB\HSPF-PESTJ\HSPF\04030101.wdm
1
04030101
RCH7
DQAL
Hour
1 C:\Users',^whelan\iemTechnologies'i5DMPB\HSPF-PEST_1\HSPF\04030101 .wdm
04030101
RCH1
DQAL
Hour
1 C:'',Users^wbel3n\iemTechnologies\SDMPB'.HSPF-PEST_1\HSPF\04030101.wdm
04030101
RCH3
DQAL
Hour
1 C:\Users\gwhelan\iemTechnologies\SDMPB'.HSPF-PEST_1\HSPF\04030101.wdm
04030101
RCH4
DQAL
Hour
1 C:\Users\gMielan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF\04030101.wdm
04030101
RCH9
DQAL
Hour
1 C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF\04030101.wdm
04030101
RCH5
DQAL
Hour
1 C:\Users^ivhelan\iemTechnologies\SDMPBl,HSPF-PESTJ\HSPF-PESTFIow\Daily\04030101.wdm
04030101
RCH2
DQAL
Hour
1 C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-PESTFIoMDaily\04030101.wdm
04030101
RCH8
DQAL
Hour
1 C:\Users \gwhelan\iemTecbnologies,iSDMPB'.HSPF-PEST_1\HSPF-PEST\Flow'l.Daily\04Q 30101. wdm
-
Selected Data (0)
Date Range of Selected Data
All
Start none
Common
none
IT] Subset, Split, or Rlter Selected Data
1 End none
none
Ok | | Cancel
—_
161
-------
"Observed" data (under "Scenario") near the watershed pour point are at "04085427" (under
"Location"). Corresponding simulated data near the watershed pour point are at "RCH9" (under
"Location"). The uncalibrated and calibrated simulation results (under "Data Source" column) are
captured in the "04030101.wdm" file in the "...\HSPF" and "...\Microbe" folders, respectively.
270. As captured below, choose the three time series indicated in "Selected Data".
File Attributes Select Help
Select Attribute Values to Filter Available Data
Scenario ~j [ Location T | [ Constituent ~ ] [ Time Unil T ] | Time Step ~ | (Data Source
04030101
NLDAS
OBSERVED
Observed
PT-OBS
04085427
DEWP
IMP102 U DIAZINON
IMP202
IMP302
IMP402
Matching Data (28 of 620)
04030101 RCH4
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
RCH5
RCH2
RCH8
RCH6
RCH7
RCH1
RCH3
RCH4
RCH9
RCH5
RCH2
RCH8
RCH6
RCH7
RCH1
RCH3
RCH4
DQAL
Enterococci
Selected Data (3 of 620)
04030101 RCH9
04030101 RCH9
Observed 04085427
FLOW
DQAL
|Q|
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
04030101 RCH9 DQAL
Observed 04085427 Enterococci
DQAL
DQAL
Enterococci
Date Range of Selected Data
All Common
Start 2000/01/01 2011/06/04
&id 2012/12/31 2012/07/26
* Unknown
| j Hour
Day
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Unknown
C:'i,Users\gwhelan\iemTechnologies\SDMPBi.HSPF-PEST_1\HSPF-PEST\FI
-------
271. Click the "Subset, Split, or Filter Selected Data" box. Click "Ok."
File Attributes Select Help
Select Attribute Values to Filter Available Data
Scenario
~ Location
~ [ j Constituent
~ 1 i Time Unii ~ | | Time Step ~ | Data Source
04030101 04085427 - DEWP
NLDAS IMP102 ~ DIAZINON
OBSERVED IMP202
Observed IMP3Q2
PT-OBS IMP402 FLOW
Matching Data (28 of 620)
04030101 RCH4
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
04030101
RCH5
RCH2
RCH8
RCH6
RCH7
RCH1
RCH3
RCH4
RCH9
RCH5
RCH2
RCH8
RCH6
RCH7
RCH1
RCH3
RCH4
Selected Data (3 of 620)
04030101 RCH9
04030101 RCH9
Observed 04085427
DQAL
| ESS
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
DQAL
Enterococci
Date Range of Selected Data
All Common
Start 2000/01/01 2011/06/04
End 2012/12/31 2012/07/26
* Unknown
|j Hour
Day
1
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Hour
Unknown
C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-PEST\Flow\Daily\04Q3G101.wdm
C:\Users',/gwhelan\iemTechnologies,,SDMPB,.HSPF-PEST_1\HSPF-PESTl.Microbe\04030101 .wdm
C:'l.Users\gwhelan'l.iemTechnologies'i.SDMPB\HSPF-PEST_1\HSPF-PEST, Microbe'1,04030101_microbe_obs_009.txt
C:\Users\gv/helan'l.iemTechnologies\SDMPB,.HSPF-PEST_1\HSPF\04030101.wdm
C:\Users\gwbelan''jemTechnologies\SDMPB',HSPF-PEST_1\met\met.wdm
C:\Users\gwhelarAiemTechnologies''.SDMPB\HSPF-PEST_Tl,HSPF',.0403Q101.wdm
C:\Users\gwbelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF\04030101 wdm
C:\Users\gwhelan\iemTechnologies\SDMPB1,HSPF-PEST_1\HSPF-
C:\Users\gwhelan\iemTechnologies''.SDMPB',HSPF-PEST_T,,HSPF-
C:\Users\gwhdan\iemTechndogies\SDMPRHSPF-PEST_1\HSPF-
C:'1,Users \gwbelan'.iemTechnologies ,,,SDMPB'.HSPF-PEST_T,HSPF-
C:\Users'-gwhelan^emTechnologies\SDMPB'.HSPF-PEST_1\HSPF-
C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-
C:\User5\gwhelan\iemTechnologies',.SDMPBl.HSPF-PEST_1\HSPF-
C:\Users VgwhelanliemTechnologies',SDMPB1,HSPF-PEST_1\HSPF-
C:\Users \gwhelarrjemTechnologies'1,SDMPB\HSPF-PEST_T',HSPF-
C:\Users\gwhelan\iemTechn0l03ies',SDMPB',HSPF-PEST_1\HSPF-
C:\Users \g*-telan\iernTechnologies\SDMPB',HSPF-PEST_T',HSPF-
C:\Users\gwhelan\iemTechnologies'lSDMPBl,HSPF-PEST_1\HSPF-
C:\Users\gwbelan\iemTechnologies''.SDMPB1,HSPF-PEST_1\HSPF-
C:'.Users'l.gwhelan\iemTechnologies\SDMPB'.HSPF-PEST_Tl,HSPF-
C:\Users\gwhelan\iemTechnologies',.SDMPBl,HSPF-PEST_1\HSPF-
C:'l.Users'vgwhelan\iemTechnologies'l,SDMPBl.HSPF-PEST_1'i.HSPF-
C:\Users\gwhel an\iemTechnologies\SD M PB'.H SPF-PEST_1\H SPF-
PESTl,Flow',,Dai ly\04030101. wd m
PEST,Flow\Dai ly\04030101. wd m
PEST\Flow\Daily\04030101. wd m
PEST,Flow'1,Daily\04030101. wd m
PESTFIwiADai ly\04030101. wd m
PESTFIow\Daily\04030101 wdm
PEST\Flow\Daily\04030101 .wdm
PEST\Flow\Dai ly\04030101. wd m
PEST,Flow\Dai ly\04030101. wd m
PEST,Microbe'1,04030101 .wdm
PESTM icrobe\04030101 .wdm
PEST.Microbe'1,04030101 .wdm
PEST.Microbe\04030101 .wdm
PEST,Microbe\04030101 .wdm
PEST',Microbe\04030101 .wdm
PESTM icrobe\04030101 .wdm
PEST,Microbe'1,04030101 .wdm
C:\Users\gwhelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-PEST\Microbe\04030101.wdm
C:\Users\gwbelan\iemTechnologies\SDMPB\HSPF-PEST_1\HSPF-PEST\Microbe\04030101_microbe_obs_009.txt
C:'',Users'l5whelan\iemTechnologies\SDMPB',HSPF-PEST_1\HSPF\04030101 .wdm
C:\Usere\gwtielan\iemTeclTnologies\SDMPB\HSPF-PEST_1\HSPF-PEST\Microbe\04030101.wdin
C:'l,Users'lgwhelan'|jemTechnologies'1,SDMPB',HSPF-PEST_1\HSPF-PEST,Microbe'1,04030101_microbe_obs_009.txt
|7| Subset, Split, or Rlter Selected Data
Ok
Cancel
272. The "Filter Data" screen appears. Under the "Subset By Date" tab, change the "Start" and "End"
dates to 2007/01/01 and 2012/12/31, respectively. Click "Ok".
~¦r Filter Data
; Subset By Date j| Seasons J Filter By Value j Change Time Step J Timeseries Math
Start 2000/01/01
End 2012/"12/31
j I Apply month/day range to each year
I Common |
2011/06/04
2012/07/26
2000/01/01
2012/12/31
Filter Data
Subset By Date | Seasons Filter By Value Change Time Step Timeseries Math |
All
Common
Start 2000/01/01 2011/06/04 |^^O0Mj1A)^
End 2012/12/31 2012/07/26 2012/12/31
.Apply month/day range to each year
Ok
163
-------
273. The "Choose Graphs to Create" window appears. Check "Timeseries", then click "Generate".
Timeseries
Flow/Duration
Frequency
Runninq Sum
Residual (TS2 - TS1) (two datasets needed but 3 datasets sek
Cumulative Difference ("two datasets needed but 3 datasets :
Scatter (TS2 vs TS1) (two datasets needed but 3 datasets sel€
IT1 Multiple WQ Plots
All
None
Cancel
Generate
274. The following "Timeseries Graph" is generated, in which two Y-axes appear. This is caused by
the large differences in magnitude between time series curves. Values on the axes differ by
approximately one-order of magnitude.
In the above graph, note that two Y-axis are appeared. This is caused by large difference between
time series. You can see the values on the both axis have about an order of magnitude difference. To
clearly indicate each time series, we can change the color of the curves, and the y-axis can be changed
from linear to logarithmic.
275. Select "Edit>Graph".
Timeseries GraphJ
File Edit
View Analysis Coordins
^Graph^
Copy
Ctrl+C Enteroc
rtuunLt 040301C
- Sin ulated Enteroc
164
-------
276. The "Edit Timeseries Graph" window below appears. Under the "Axes" tab, choose "Bottom X"
for "Axis", and change "Title" to "YEAR". Click "Apply".
i^| Edit Time-Series Graph
.Axes
Axis
Type
Title
Curves
Lines Legend
Text
a Bottom X
® Time
Left Y
Linear
Right Y
Logarithmic
Auxiliary Y
Probability
YEAR
Font
Zoom Range 2006/12/31 to 2012/12/31 ~ Reverse
Major Units 0 tics 0 grid Grid Color
Minor Units 0 tics 0 grid Grid Color
Font
Apply Automatically
Apply
277. Select "Left Y" for "Axis" and "Logarithmic" for "Type", then type "Uncalibrated Enterococci
Concentration (Cells/L)" for "Title", and set "Zoom Range" as 10,000 to 10,000,000. Click "Apply".
mi| Edit Time-Series Graph
Axes Curves Lines Legend Text
Axis 0 Bottom X a Left Y Right Y
Type Time Unear ® Logarithmic
Title
Auxiliary Y
Probability
Uncalibrated Enterococci Concentration {Cells/L)
Font
Zoom Range 10,000 to 10,000,ODD O Reverse
Major Units 0] tics 0 grid Grid Color
Minor Units 0] tics 0 grid Grid Color
Font
Apply Automatically
Apply
165
-------
278. Select "Right Y" for "Axis" and "Logarithmic" for "Type", then type "Observed/Calibrated
Enterococci Concentration (Cells/L)" for "Title", and set "Zoom Range" as 1000 to 1,000,000. Click
"Apply".
279. Go to the "Curve" tab.
a. Select "Observed Enterococci at 04085427" for "Curve", then change "Label" to "Observed".
Note that the "Y axis" is "Right".
b. Since this observation is intermittent, only express the data with symbols that do not have a
continuous line.
i.
Uncheck "Line".
ii
Change "Size" to "9".
in.
Select symbol type as "Circle"
iv.
Check "Fill".
v.
Change "Color" to blue.
vi.
Click "Apply".
166
-------
280. Select the first time series, "Hourly 04030101 Dqal at RCH9" for "Curve". "Left" "Y Axis" has
been selected for this time series.
a. Change "Label" to "Simulated (Uncalibrated).
b. Change "Color" to grey.
c. Click "Apply".
ijf Edit Time-Series Graph
Axes J Curves Lines j Legend j Text
Curve
Label
Y Axis
Color
O Line Width
[V] Symbols Size
Hourly 04030101 Dqal fit Rch9
Hourly 04030101 Dqal At Rch9
Observed
van mgnt -
Random New Colors For All Curves
RearwardStep
M Fill
I a
I
[PI Apply Automatically
Apply
Edit Time-Series Graph
Si
| Axes | Curves Lines j Legend j Text
Curve Simulated (Uncalibrated)
Label Simulated (Uncalibrated)
YAxis ® Left © Right © Auxiliary
Color
£7) Line
Random New Colors For All Curves
Width
0 Symbols Size
Solid
None
~ RearwardStep
w ~ Rll
In Apply Automatically
Apply
281. Select the second time series, "Hourly 04030101 Dqal at RCH9" for "Curve". "Left" "Y Axis" has
been selected for this time series.
a. Change "Label" to "Simulated (Calibrated).
b. Change "Color" to red.
c. Click "Apply".
Axes Curves [ Lines | Legend Text
Curve
Label
YAxis
Color
W\ Lsie Width
[7] Symbols Size
bSimulated (Uncalibrated
i W
Simulated (Uncalibrated) »
Hourly 04030101
Observed
Mr-fast '¦ • » vutii •• • miAiiiaiy ¦
Random New Colors For All Curves
~ RearwardStep
~ ~ Rll
in Apply Automatically | Apply
Axes ] Curves | Lines f Legend j Text
Curve
Label
Y Axis
Color
1] Line
Hourly 04030101 Dqal At Rch9
Simulated (Calibrated)
(§) Left © Right
© Auxiliary
Random New Colors For All Curves
Width
O Symbols Size
RearwardStep
~ Rll
[T] Apply Automatically [ Apply
167
-------
282. Close the "Edit Timeseries Graph" window, and all three time series in "Timeseries Graph"
window will be plotted.
ii| Time-Series Graph
File Edit View Analysis (2011 Nov 5,190,520) Help
10,000,000
Simulated (Uncalibrated)
Simulated (Calibrated)
Observed
M HM
283. The graph can be exported as an image file. In the "Timeseries Graph" window, select "File>Save
As...".
m
| Timeseries GraphJ
File] Edit View Analysis Coi
Select Data
Observe
Simulate
Simulate
284. Choose desired file format (.tif in this example), define the file name (Result.tif in this example)
and click "Save".
|fc«SaveAs^B
ILX
' - ST ~ K V \ ;
p
Organize ~ New folder
m - «
1 SDMProject * Name
Date modified Type
Size
1 Manitowoc
i EPAWaters
No items match your search.
1 HSPF
Jl hspf-pest
| Flow
i Daily ra
1 Hourly =
Microbe —
jL hucl2
I 040B0101
i Local Data < \
.HI,
i >
I
File name: Result ~ 1
Save as type: jliff Format (*.tif) ~ 1
| — Hide Folders
Save
| Cancel
168
-------
DISCLAIMER
Information in this document has been funded in part by the United States Environmental Protection
Agency under Interagency Agreement DW-89-92399101-1 to the Idaho National Laboratory. It has been
subjected to the Agency's peer and administrative review and has been approved for publication as an
EPA document. Mention of trade names or commercial products does not constitute endorsement or
recommendation for use.
REFERENCES
Bicknell B.R., Imhoff J.C., Kittle, Jr. J.L., Jobes T.HDonigian, Jr. A.S. 2005. HSPF version 12.2 user's
manual.
Doherty J. 2005. PEST: Model-independent parameter estimation user manual. 5th edition, Watermark
Numerical Computing.
EPA. 2000. BASINS Technical Note 6: Estimating Hydrology and Hydraulic Parameters for HSPF. 32p.
(http://water.epa.gov/scitech/datait/models/basins/upload/2000 08 14 BASINS tecnote6.pdf)
Whelan, G., K. Wolfe, R. Parmar, M. Galvin, M. Molina, R. Zepp, K. Kim, P. Duda. 2017a. Quantitative
Microbial Risk Assessment Tutorial: Primer. U.S. Environmental Protection Agency, Athens, GA.
Whelan, G., K. Kim, K. Wolfe, R. Parmar, M. Galvin, M. Molina, R. Zepp, P. Duda, M. Gray. 2017b.
Quantitative Microbial Risk Assessment Tutorial: Pour Point Analysis of Land-applied Microbial Loadings
and Comparison of Simulated and Gaging Station Results - Updated 2017. EPA/600/B-15/290. U.S.
Environmental Protection Agency, Athens, GA.
Whelan, G., K. Kim, K. Wolfe, R. Parmar, M. Galvin. 2017c. Quantitative Microbial Risk Assessment
Tutorial: Installation of Software for Watershed Modeling in Support of QMRA - Updated 2017.
EPA/600/B-15/276. U.S. Environmental Protection Agency, National Exposure Research Laboratory,
Athens, GA.
Whelan, G., K. Kim, K. Wolfe, R. Parmar, M. Galvin, M. Molina, R. Zepp. 2017d. Navigate the SDMPB and
Identify an 8-Digit HUC of Interest - Updated 2017. EPA/600/B-15/273. U.S. Environmental Protection
Agency, Athens, GA.
Whelan, G., R. Parmar, K. Wolfe, M. Galvin, P. Duda, M. Gray. 2017e. Quantitative Microbial Risk
Assessment Tutorial - SDMProjectBuilder: Import Local Data Files to Identify and Modify Contamination
Sources and Input Parameters - Updated 2017. EPA/600/B-15/316. U.S. Environmental Protection
Agency, Athens, GA.
169
-------
Whelan, G., K. Kim, R. Parmar, K. Wolfe, M. Galvin, M. Gray, P. Duda, M. Molina, R. Zepp. 2017f.
Quantitative Microbial Risk Assessment Tutorial: Land-applied Microbial Loadings within a 12-Digit HUC
- Updated 2017. EPA/600/B-15/298. U.S. Environmental Protection Agency, Athens, GA.
Whelan, G., K. Wolfe, R. Parmar, M. Galvin, M. Molina, R. Zepp, P. Duda. 2017g. Quantitative Microbial
Risk Assessment Tutorial: Point Source and Land-applied Microbial Loadings within a 12-Digit HUC. U.S.
Environmental Protection Agency, Athens, GA.
Whelan, G., K. Kim, R. Parmar, K. Wolfe, M. Galvin, M. Gray, P. Duda, M. Molina, R. Zepp. 2017h.
Quantitative Microbial Risk Assessment Tutorial: Using NLDAS and NCDC Meteorological Data - Updated
2017. EPA/600/B-15/299. U.S. Environmental Protection Agency, Athens, GA.
Whelan, G., R. Parmar, G.L. Laniak. 2017i. Microbial Source Module (MSM): Documenting the Science
and Software for Discovery, Evaluation, and Integration; Updated - 4/17/17. EPA/600/B-15/315, U.S.
Environmental Protection Agency, Office of Research and Development, Athens, GA.
170
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APPENDIX A
USGS Instantaneous Data Archive for Instantaneous Discharge Data using the BASINS
Download Data Tools
The USGS Instantaneous Data Archive (IDA) for Instantaneous Discharge data provides hourly and sub-
hourly discharge data at USGS gaging stations. As noted in the main text, as of June 23, 2017, access to
USGS Instantaneous Data Archive (IDA) for Instantaneous Discharge data is not available on the USGS
web site. In the event that USGS IDA for Instantaneous Discharge data become available and the web
service is activated within the SDMPB, this section describes how the user can access and retrieve the
instantaneous discharge data using the BASINS download data tools.
1. To download discharge data at the 04085427 gage station from the USGS web site,
c. Highlight the "NWIS Daily Discharge Stations" layer in the "Legend" panel (see red box in the
figure below).
""i*
d. On the tool bar, click , then click on each gage station on the map while holding the
Ctrl key down. The gage stations will be highlighted.
I BASINS 4.5 - HSPF-
-PEST*"*
« * Models
Compute Launch - ' Analysis Layer View Bookmarks Plug-ins Shapefile Editor
;u * k > 9 :is La m a » l» 1* Ki j n % K' O "i
New Open Save Print Settings Add Remove Clear Symbology Categories Queiy Properties Table Select Deselect Measure Identify Label Mover
~i* S , , fk , * shp shp O Q © 4 ~$*
n Add Remove Copy Paste Merge Erase Erase beneath Move Rotate Resize Moveverte
Next Layer
~ a. a-a-
Cleanup Undo
BO NAWQAStudy Area Unit Boun
~
E3D Accounting Unit Boundaries
~ ~ Cataloging Unit Boundanes
SD County Names
Ein County Boundanes
QD EPA Region Boundaries
0 D State Boundaries
~
QD Major Roads
[3 Cj Ecoregions (Level lll>
df
BD Land Use Index
n
o'So"
HE amplified RowSne
• 04085281
04085330
X: 699,253.505 Y: 2.360,922.141 Meters Lat 43549 Long: -87.244
171
-------
2. On the menu bar, select "File>Download Data".
BASINS4,1 - Manitowoc*B
File
Watershed Delineation
Model
(~ New
ji Open Project
jn Save
&
& Save As
[revious
4 Archive/Restore Project.,,
(^Download Data)
OpeH UdLd
Manage Data
f
1
New Data
^ «
ifl Save Data In... ^
•
3. The "Download Data" window appears. Check "Daily Discharge" and "Instantaneous Discharge", If
the "Daily Discharge" has been chosen in a previous data download, only choose "Instantaneous
Discharge". Click "Download".
1
Download Data I
Hydrologic Unit 04030101
Region to Download
BASINS
DEM Shape GIRAS Land Use J NED 1 Census Met Stations
~ DEM Grid ~ Legacy STORET ~ NHD ~ 303(d) ~ Met Data
National Hydrography Dataset Plus
~ All ~ Catchments
n Elevation Grid [J Hydrography
Station Locations from US Geological Survey National Water Information System
I Discharge M Water Quality | J Measurements ' Daily GW [ 1 Periodic
Data Values from US Geological Survey National Water Information System
f/^ail^Discharo^^
National Land Cover Data 2001
Land Cover Impervious
( J Canopy | I 1992 Land Cover
ile after Stations are selected on map)
EPA STORET Water Quality
Stations rH Results (ava
North American Land Data Assimilation System
0 Grid J Precipitation (available after grid selection on map)
Merge J Clip to Region Help Cancel
Download
172
-------
4. The following window appears. The daily flow observation time series file name will already be
identified, but you can pick a different name or folder location. You can also store the data in an
existing WDM file by choosing "Add data to existing WDM file" and locating the WDM file. In this
example, a WDM file, "flow.wdm", will be created in the example folder location
"C:\Temp\SDMProject\Manitowoc\nwis\". Click "Ok".
Daily Discharge Processing Options]
After downloading Flow data.
Add individual files {one per station) to project
9 Add data to new WDM file: C:\Temp\SDMProject\Manitowoc\nwis\flow.wdm
© Add data to existing WDM file:
© Do not add data to project
Browse...
Browse..
Ok
5. BASINS will download daily flow data. Click "OK" when the message for "WDM Datasets added"
appears.
6. BASINS will download instantaneous flow data for only those stations that appear. Click "OK" when
the message appears noting: IDA data found for the selected station.
7. When the "Data Download" screen appears, click "OK".
173
-------
If multiple stations are chosen (which is not in this case), then a message like the following wil
appear, noting only those stations where instantaneous flow data are available.
IDA data is not yet available for all discharge stations.
IDA data found for 2 of 3 stations.
OK
If multiple stations are chosen (which is not in this case), then a message like the following will
appear, noting only those stations where instantaneous flow data are available.
IDA data is not yet available for all discharge stations,
IDA data found for 2 of 3 stations,
OK
When the "Data Download" screen appears, click "OK".
Data Download J
Downloaded Data file: C:\Temp\SDMProject\Manitowoc\nwis\flow.wdm
Downloaded 2 Data files
OK
174
-------
8. The following "Data Sources" window appears to show time series data files associated with this
project. Here, there are two WDM files and two RDB files as data sources. Close this window by
selecting "File>Exit".
175
-------
APPENDIX B
Flow Calibration: Details of "HSPF_PEST_flow.exe" and "lnput_flow.in"
This section provides details of the FORTRAN code for preparing HSPF parameter calibration with PEST
(i.e., "HSPF_PEST_flow.exe"). "HSPF_PEST_flow.exe" is designed to
• consume the HSPF input UCI file (*.uci) prepared by SDMPB
• consume a flow observation file (*_obs.txt)
• consume a user input file (lnput_flow.in)
• prepare PEST input files (*.pst, *. tpl, *.ins)
• prepare batch files for running HSPF and PEST ("runHSPF.bat" and "runPEST.bat", respectively)
• prepare the file containing observed flows with missing values ("*_obs.out").
Input files include:
• Input UCI file (".uci"): represents the main HSPF input file prepared by SDMPB
which includes all input data (e.g., simulation time, time series input file names, output file
names, land use segmentation, print options, parameters, etc.), except time series input. Users
do not need to directly modify the UCI file, since it can be modified through the HSPF user
interface, although experienced users can modify this ASCII file directly. Only one UCI file exists
per working folder, as specified in the "lnput_flow.in" file.
• Flow observation ("_obs.txt"): includes observed flow time series with the
desired time step for parameter calibration which is downloaded and exported through BASINS.
Users do not need to modify this file since it typically reflects USGS gaging station data. The time
series in this file can include missing data.
• User input file ("lnput_flow.in"): includes information for generating PEST input files.
Figure B.l presents the generic format of the "lnput_flow.in" file. Descriptions of input data are:
HSPFPATH
WORKPATH
PESTPATH
ny_warm
nLUgroup
nLU
LU
(blank line)
para
lower upper
Figure B.l. Constructions of user input file ("lnput_flow.in")
• HSPFPATH: path of WinHSPFIt.exe. When HSPF is installed with BASINS, WinHSPF 3.0 (with user
interface) and its light version, WinHSPFIt.exe (without user interface), are installed together.
176
-------
PEST executes WinHSPFIt.exe as executed on the Command Window. WinHSPFIt.exe is typically
located in "\mode\s\HSPF\b\n\" or "\b\n\".
• WORKPATH: path of working folder where input UCI file, WDM files, and a flow observation file
are located, and output files of "HSPF_PEST_flow.exe" will be generated.
• PESTPATH: path of pest.exe.
• ny_warm: number of years for model warm-up, from start of the simulation as it appeared in
the input UCI file
• nLUgroup: number of land use groups. "1" means PEST calibrates the same parameter value for
all land use groups. nLU and LU must be repeated nLUgroup times.
• nLU: number of land use types included in each land use group. For example, a land use group
may include two types such as Agricultural and Forest. There are nine land use types:
Water/Wetlands, Urban, Barren or Mining, Forest, Upland Shrub Land, Agriculture-Cropla, Grass
Land, Agriculture-Pastur, and Transitional. "Cropla" and "Pastur" refer to Cropland and Pasture.
• LU: Land use types included in each land use group. LU must be repeated as many as nLU times.
LU must be same as it appears in the input UCI file. If there are land use types that do not
appear in the UCI file, the program skips them.
• para: name of each parameter, para should be the same as it appears in the input UCI file.
• lower and upper: minimum and maximum values of each parameter in the calibration process.
This line must be repeated nLUgroup times for each parameter. Possible and recommended
parameter ranges can be found in EPA (2000).
Figure B.2 illustrates an example user input file "lnput_flow.in". It differentiates parameter values into
four land use groups, which means PEST calibrates four different values for each parameter. Output files
include:
• PST file ("_f\ow.pst"): PEST control file that includes PEST parameters,
information of model parameters, parameter groups, observed flow, model executables, etc.
Users can modify or add PEST parameters, as necessary. Explanation of PEST parameters can be
found in the PEST manual (Doherty, 2005) at http://www.pesthomepage.org/Downloads.php.
• TPL file ("_flow.tpl"): PEST template file that includes structure of the model
input file (i.e., HSPF UCI file) and location of calibrating parameter values.
• INS file ("_flow.ins"): PEST instruction file that explains how PEST reads the
model output file for calculating error statistics.
• "runHSPF.bat": Batch file that executes HSPF.
• "runPEST.bat": Batch file that executes the HSPF parameter calibration with PEST.
• Flow observation with missing data ("_obs.out"): A file that includes flow
observations with missing data denoted as "-9999"; this file is not used by PEST.
The following assumptions apply when constructing the PEST input file:
• Simulation start and end times, including model warm-up, are assumed to be the same, as they
appear in the HSPF input UCI file prepared by SDMPB.
• PEST calibrates HSPF flow parameters during calibration which is when observation and
simulation periods overlap. If no overlap occurs, "HSPF_PEST_flow.exe" returns an error, noting
that an inconsistency exists between the two periods.
177
-------
C:\Basins45\models\HSPF\bin\
C:\Temp\SDMProject\Manitowoc\HSPF\Flow\Hourly\
C:\PEST\
2
4
1
Urban or Built-up La
2
Agricultural Land
Forest Land
1
Wetlands/Water
1
Barren Land
KMELT
0.0000
0.200
0.0000
0.100
0.0000
0.200
0.0000
0.200
INFILT
0.0010
0.200
0.0010
0.500
0.0010
0.500
0.0010
0.500
AGWRC
0.8500
0.900
0.8500
0.950
0.8500
0.999
0.8500
0.999
BASETP
0.0000
0.050
0.0000
0.200
0.0000
0.200
0.0000
0.200
LZETP
0.1000
0.500
0.1000
0.900
0.1000
0.900
0.1000
0.900
Figure B.2. Example user input file "lnput_flow.in", differentiating parameter values into four land use
groups
178
-------
• PEST minimizes the squared error between observations and calculations at the outlet of the
watershed, as defined in the input UCI file prepared by SDMPB. The outlet of the watershed
appears on the last line of "OPN SEQUENCE" section in the input UCI file.
• It changes "Flags" in "PRINT-INFO" and "BINARY-INFO" sections, throughout the input UCI file,
to "6" which means "never print" in default output and binary files, thereby saving output size.
• It removes "EXT TARGETS" section in the input UCI file, instead adding a "PLTGEN" section after
the "FTABLES" section to print selected flow (i.e., calculated flow discharge at the calibration
point within the watershed) in a separate output file. Writing to "PLTGEN" includes adding a
name of the separated output file (i.e., *_flow.p93), a "PLTGEN" line in "OPN SEQUENCE"
section, and a "NETWORK" section after the "EXT SOURCES" section.
• It indicates the time step of the observed flow in "*_obs.txt", then writes the "PLTGEN" section
accordingly. Thus, if a user prepares 15-minute, 30-minute, or hourly flow observations in
"*_obs.txt", the model writes hourly flow values to calibrate parameters with hourly flow. Only
15-minute, 30-minute, hourly, or daily time steps can be indicated.
• It assumes all parameters do not vary by month, even if some vary in the input UCI file prepared
by SDMPB.
• It turns on "Snow Accumulation and Melt", if it is turned off in the input UCI file.
• It turns off soil temperature and water quality modeling for simulation efficiency.
• If the parameter AGWETP is calibrated, it assumes AGWETP varies only for the land use type
"Wetlands/Water", and is fixed for other land use types as "0" (EPA, 2000).
179
-------
APPENDIX C
Flow Calibration: Heuristic Relationships between Land Use Types
and Various Calibration Parameters
Parameter ranges and their calibrated values may vary by land use types. Although there are no
recommended ranges that vary by land use types, heuristic relationships between land use types for
various parameters are defined as follows:
• INFILT - highest for water/wetlands, next highest for forest
• LZSN - highest for forest, lowest for water/wetlands
• CEPSC - may change over the course of the growing season for agricultural land uses and
deciduous forest (monthly)
• UZSN - may change over the course of the growing season for agricultural land uses (monthly);
highest for water/wetlands, next highest for forest
• LZETP - higher for forest and wetlands, next highest for row crops, then grassland
The above relationships can be used to establish parameter ranges for calibration or to evaluate
calibration results.
180
-------
APPENDIX D
Microbial Calibration: Details of "HSPF_PEST_microbe.exe" and "lnput_microbe.in"
This section provides details of the FORTRAN code for preparing HSPF calibration of microbial
parameters using PEST (i.e., "HSPF_PEST_microbe.exe"). "HSPF_PEST_microbe.exe" is designed to
• consume the HSPF input UCI file (*_flow.uci) which is prepared during the HSPF flow parameter
calibration with PEST
• consume a microbial observation file (*_microbe_obs.txt)
• consume a user microbial input file (lnput_microbe.in)
• prepare PEST input files (*_microbe.pst, *_microbe.tpl, *_microbe.ins)
• prepare an input file (*_microbe _P2P.tpl) for PAR2PAR, which is a PEST utility that manipulates
parameters
• prepare batch files for running HSPF and PEST (runHSPF.bat and runPEST.bat, respectively).
• prepare a file containing observed microbial densities (concentrations) with missing values
"*_microbe_obs.txt".
Input files include:
• Input UCI file ("_flow.uci"): the main HSPF input file resulting from HSPF flow
parameter calibration process using PEST, which includes calibrated HSPF flow parameters, all
input data (e.g., simulation time, time series input file names, output file names, land use
segmentation, print options, parameters, etc.), except time series input. Users do not need to
modify the UCI file directly, since it can be modified through the HSPF user interface, although
experienced users can modify this ASCII file directly. Only one UCI file exists per working folder,
as specified in the "lnput_microbe.in" file.
• Microbial density observations ("_microbe_obs.txt"): includes observed
microbial densities varying in time, where intermittent or fixed time steps are allowed; this file
can include missing data.
• User-defined microbial input file ("lnput_microbe.in"): includes information for generating PEST
and PAR2PAR input files.
Figure D.l presents the generic format of the "lnput_microbe.in" file. Descriptions of input data are:
• HSPFPATH: path of WinHSPFIt.exe. When HSPF is installed with BASINS, WinHSPF 3.0 (with user
interface) and its light version, WinHSPFIt.exe (without user interface), are installed together.
PEST executes WinHSPFIt.exe, as it is executed in the Command Window. WinHSPFIt.exe is
typically located in "\mode\s\HSPF\b\n\" or "\b\n\".
• WORKPATH: path of working folder where the input UCI file, WDM files, and a microbial
observation file are located, and where output files of "HSPF_PEST_microbe.exe" will be
generated.
• PESTPATH: path of pest.exe.
• ny_warm: number of years for model warm-up from start of the simulation, as appeared in the
input UCI file
• nLUgroup: number of land use groups. "1" means PEST calibrates the same parameter value for
all land use groups. nLU and LU have to be repeated nLUgroup times.
• nLU: number of land use types included in each land use group. For example, a land use group
may include two land use types, such as Agricultural and Forest. There are up to nine land use
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types: Water/Wetlands, Urban, Barren or Mining, Forest, Upland Shrub Land, Agriculture-
Cropla, Grass Land, Agriculture-Pastur, and Transitional. "Cropla" and "Pastur" refer to Cropland
and Pasture.
• LU: Land use types included in each land use group. LU has to be repeated as many as nLU
times. LU must be the same as it appears in the input UCI file. If there are land use types that do
not appear in the UCI file, the program skips them.
• para: name of each parameter, para should be the same as it appears in the input UCI file.
Parameters that start with "MON-" or "MONTH-" indicate parameters that vary monthly.
o (lower) and (upper): minimum and maximum values for those parameters that vary
monthly, and are not used if the parameters do not vary monthly. When "-9999" is
used, no minimum or maximum value is assigned to the parameter.
• lower and upper:
o Parameters that vary monthly represent minimum and maximum values of proportional
change, multiplying the initial values of these parameters by this factor. This line must
be repeated nLUgroup times for each parameter, except 'MONTH-DATA', 'FSTDEC' and
'THFST' since those are not grouped by land use.
o Parameters that do not vary monthly represent minimum and maximum values.
HSPFPATH
WORKPATH
PESTPATH
ny_warm
nLUgroup
nLU
LU
para (lower) (upper)
lower upper
Figure D.l. Constructions of user input file ("lnput_microbe.in")
An example user input file "lnput_microbe.in" is illustrated in Figure D.2. It separates parameter values
into two land use groups which means PEST calibrates two different values for each parameter.
Parameter names in PEST input files are differentiated by numbers following parameter names. Note
that only one range can be provided for 'MONTH-DATA', 'FSTDEC', and 'THFST'. Output files include:
• PST file ("_microbe.pst"): PEST control file including PEST parameters,
information of model parameters, parameter groups, microbial observation, model executables,
etc. Users can modify or add PEST parameters, as necessary. An explanation of PEST parameters
can be found in the PEST manual (Doherty, 2005) at
http://www.pesthomepage.org/Downloads.php.
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C:\Basins45\models\HSPF\bin\
C:\Temp\SDMProject\Manitowoc\HSPF-PEST\Microbe\
C:\PEST\
1
2
3
Water/Wetlands
Urban
Barren or Mining
6
Forest
Upland Shrub Land
Agriculture - Cropla
Grass Land
Agriculture - Pastur
Traditional
MON-ACCUM 0.000 -9999
0.00000 1000.00000
0.00000 1000.00000
WSQOP
0.01000 10.00000
0.70000 2.20000
IOQC
0.00000 1.E10
0.00000 1.20000
AOQC
0.00000 1.E10
0.00000 1.20000
FSTDEC
0.00001 2.00000
THFST
1.00000 2.00000
MONTH-DATA -9999 -9999
0.00000 1000.00000
Figure D.2. Example user input file "lnput_microbe.in"
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• PAR2PAR TPL file ("_microbe_P2P.tpl"): PAR2PAR template file, indicating the
HSPF model input file structure (i.e., "*_microbe.uci") and locations where calibrating
parameter values are to be placed. In PEST calibration, this PEST utility (i.e., "PAR2PAR.exe")
must be executed prior to every HSPF execution to prepare the HSPF UCI file with parameters
that change proportionally. Details of PAR2PAR can be found in the PEST manual (Doherty,
2005) at http://www.pesthomepage.org/Downloads.php.
• PEST TPL file ("_microbe.tpl"): PEST template file indicating structure of the
PAR2PAR input file, instructing how to calculate parameters with proportional change, and
providing locations where calibrating parameter values are to be placed.
• INS file ("_microbe.ins"): PEST instruction file indicating how PEST will read the
model output file for calculating the error statistics.
• "runHSPF.bat": Batch file that executes HSPF (i.e., WinHSPFIt.exe) and PAR2PAR (i.e.,
par2par.exe").
• "runPEST.bat": Batch file that executes HSPF parameter calibration with PEST
The following assumptions apply when constructing the PEST input file:
• Simulation start and end times include the original simulation period which is indicated by the
input UCI file (i.e., "*_flow.uci") and microbial observation period. Users need to ensure
"met.WDM" includes input MET data for the simulation period.
• PEST calibrates HSPF microbial parameters during calibration which is when observation and
simulation periods overlap.
• PEST minimizes the squared error between observations and calculations at the outlet of the
watershed, as defined in the input UCI file. If a parameter name in the User input file (i.e.,
"lnput_microbe.in") starts with "MON-" or "MONTH-", it assumes the parameter varies by
month and sets it to change proportionally throughout calibration. PEST, therefore, does not
calibrate the parameter value itself, but the proportional value related to the initial parameter
value.
• Soil temperature and water quality modeling in the UCI file are turned on.
• The "PLTGEN" section is added after the "FTABLES" section in the UCI file to print selected
microbial concentrations at the calibration points within the watershed in a separate output file.
Writing the "PLTGEN" section includes adding a name of the separate output file
(*_microbe.p9X), "PLTGEN" line in the "OPN SEQUENCE" section, and a "NETWORK" section
after the "EXT SOURCES" section.
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