San Juan Watershed
MONITORING PROGRAM
FLOW
'	TRANSECT SAMPLES (1 per [junmet)	^
Surripimg puirtl ut uiich Siunaucl ueteoitxi systamiititully uftoi random start
Sarripfcng points proceed iri L, C. R pattern upstream
Modified D-frame kick not
1 square foot Quadrat sampled for 30 MoondB
COMPOSITE SAMPLES FROM ALL TRANSECTS
• Serve bucket or other bucket!*)
COMPOSITE AND PRESERVE SAMPLE
1 liter bottlers) (max of 4 bottles >1 pass/Ob)
Fil no more than 50% with sample
PrfiSHfVfi with -95% Rthanol (or h final con-
cenUatoon of at least 70%
:Q
WHY DO WE CONDUCT BENTHIC MACROINVERTEBRATE ASSESSMENTS?1
Benthie (or "bottom-dwelling") macroinvertebrates are-small
aquatic animals and larvae, including mayfly, caddis, and
stonefly larvae;, as well as snails, worms, and beetles. They
can be seen without a microscope- and are often found
attached to rocks, vegetation, logs, and sticks or burrowed
into sand and sediments- The diversity and assemblage of
benthie macroinvertebrate communities can be an important
indicator of health in aquatic communities, and the health of
macroinvertebrate communities is strongly correlated to water
quality, water chemistry, and more-. Macroinvertebrate assess-
ments can also help identify important environmental stress-
ors and trends in ecosystems. Macroinvertebrates tolerate
Certain stressors better than others. Therefore, the make-up
of the benthie community (that is, the presence or absence of
certain species) can provide valuable clues about pollutants in
the water. Macroinvertebrate orders including Ephemeroptera
(mayflies), Plecoptera (stoneflies), and Trichoptera (caddisflies)
are especially sensitive to pollutants and can be important
indicators of water quality.
MACROINVERTEBRATE COMMUNITY STRESSORS Figure 1. Transect sample design for collecting benthie
macroinvertebrates at wadeable sites.
Biological condition is the most comprehensive indicator of
waterbody health. Human activity or natural events can compromise waterbody health. Generally, healthy
waterbodi-es can support a wide variety and high number of macroinvertebrates, including many that cannot
tolerate pollution. When the biology of a waterbody is healthy, the chemical and physical components of the
waterbody are also usually in good condition. However, if samples show only pollution-tolerant species, or
little diversity or abundance, that may be an indicator of a less healthy waterbody. This information can be
used similarly to fish populations in understanding of the biological condition of a waterbody.
I Ccwntani! ALL kirA ritil •wartpltm cxrflitctacl from ALL biinsnctn

-------
COLLECTING SAMPLES2
Because macroinvertebrates typically live on the bottom of a river, we must first disturb them, usually by
"kicking" the substrate surface upstream of our collection net. The current of the water then pushes the
macroinvertebrates into the net. Under this approach, we place the mouth of the net in the same area that
we disturb with the "kicking" technique. Disturbing a defined area (1 meter2) for a pre-defined period of time
allows us to estimate the population of macroinvertebrates in that area.
To create a composite sample, we combine samples at each transect (see Figure 1). We sample the first
transect at a randomly selected left, right, or center point, then alternate the positions for the remainder of
the transects. Samples are combined in a 1-liter bottle and preserved with 95 percent ethanol, which eutha-
nizes the- macroinvertebrates. This eliminates the potential for larger, predatory macroinvertebrates to eat the
smaller ones and affect the sample composition.
SAMPLING EQUIPMENT
Collecting
• Modified kick net :(D-frame with 500 |im
• Smal l spatula, spOiOn,, or scoop to transfer sample
Samples
mesh) and 52" handle
• Sample;jars, 1L HDPE plastic suitableTor use with

• Watch with timer or stopwatch
ethanol

• Sieve bucket with 500 urn mesh openings
• 95% ethanol, in a' proper container

(U.S. Sitd No:, 35)
• Cottjtf (with absorbent material) for transporting

• 5-gallon bucket
ethanol and samples

• Watchmakers' forceps
• Electrical tapฎ

• Was:h bottle, 1L capacity labeled "STREAM
• Scissors

WATER"
• Field Operations Manual or laminated Quick

• Funnel with large Pore spout
Reference Guide
Recording
• Composite benthic sample labels with and
• Soft (#2) lead pencils
Measurements
without preprinted sample ID numbers
• Fine-tip indelible markers

• Blank labels on waterproof paper tor
• Clear tape strips

inside of jars
• Sample Gellegtipn form
To learn more about benthic macroinvertebrate sampling, visit https://www.epa.gov/national-aquatic-
resource-survevs/indicators-benthic-imacroinvertebrates,
* LM EF'4, National Aquatic Resource Surveys, IncliHHKTS: BenthlEftlKi CTBrttfeMtes. flMHltflBlle at
national-aquatic-resource-surveys/indicators-benthic-macroinvertebrates; Mountain Studies Institute. December 2017. Animas
River 2017 Macroinvertebrate Assessment. Available at https://static1.squarespace.eom/static/53bc5871e4b095b6a42949b4A/5
ad4e5$98d922deflt5939dc/1523902l)fi2738/MSI &TifmssBMLfeparLJ?0'1SQ417 pdf
fllS M-31*'I fetorฉ I Ftveis sgl 8tf$png A$efaSSftR?fTti fita Field Opeiatiofr$ Manufel watiesbls vetsidfi 15
Available at F	iction/files/2019-05/clocuments/ri'sa_l6l9_fom_wadeable_version_1.2_0.pdf.
4>EPA
EPA 841-F-21-006
United States	APRIL 2021
Environmental Protection	,
Agency	https://www.epa.gov/saniuanwatershed

-------