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Improving Nutrients in Moro Cojo Slough Subwatershed

Waterbody Improved T'ne Moro Cojo s'ous'n drains a 17-square-mile watershed that

flows into Moss Landing Harbor in the center of Monterey Bay on
California's Central Coast. The slough is on the Clean Water Act (CWA) section 303(d) list for nitrate
and nutrient-related impairments, including low dissolved oxygen and un-ionized ammonia. Irrigated
agriculture discharges were identified as the primary controllable source of nutrient pollution,
with adjacent waters contributing to nutrient loading due to tidal mixing. With the implementation
of nutrient treatment systems, total nitrogen concentrations have dropped below wet and dry
season targets in recent years. However, data are needed to confirm that nutrients no longer drive
eutrophic conditions (as measured by biostimulatory effect indicators, such as dissolved oxygen
conditions and algal blooms).

Problem

The Salinas Valley is the largest watershed in the
Monterey Bay area (Figure 1). Agriculture (including
irrigated cropland and grazing lands) is the dominant
land use in the Lower Salinas Valley. The approximately
10,000-acre Moro Cojo Slough subwatershed histori-
cally supported about 1,500 wetland acres. According
to the U.S. Fish and Wildlife Service's National Wetlands
Inventory over 870 acres have been converted to
agricultural use since the 1880s. The ditching and
draining of thousands of acres of wetlands on the Moro
Cojo Slough watershed has greatly reduced the natural
capacity of the local landscape to improve water qual-
ity, store flood waters, and recharge aquifers.

In 1996, the Moro Cojo Slough was added to the CWA
303(d) list of impaired waters for violating its cold and
warm freshwater habitat designated use standards for
nitrogen, dissolved oxygen, and un-ionized ammonia.

The Lower Salinas River Watershed Nutrient Total
Maximum Daiiy Load (TMDL) was approved In May 2014.

Story Highlights

The Moro Cojo Slough Management and Enhancement
Plan was established in 1996 to guide efforts. To date,
project partners have restored 286 acres of wetlands,
an increase of 41%, and they added bioreactors and
treatment wetlands within the Lower Moro Cojo
watershed. In 1996, cattle were excluded from a 2.6-
acre grazing lot at Moonglow Dairy, which was then
restored to native wetland that serves as a buffer zone;
the wetland filters runoff from dairy operations on the

surrounding hillsides, reducing turbidity and nitrate.
In 1998, the Citizen Watershed Monitoring Network
Project supported monitoring efforts, built infrastruc-
ture, and coordinated existing and emerging regional
groups. In 1999, theTottino Ponds Restoration Project
converted 14 acres of frequently flooded iand to treat
farm and stormwater runoff from approximately 50
acres and directed water to the adjacent Castroviiie
wetland restoration project before flowing to the
Moro Cojo Slough. An additional wetland habitat pond
was added in 2002.

In 2000, the Moro Cojo Slough: Nonpoint Source (NPS)
Implementation Project restored freshwater wetlands
to treat irrigation water, increase flood protection, and
recharge groundwater. In 2005, the Restoring Natural


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Figure 2. Total nitrogen at site 309MOR (1999-2019).

Water Systems in Rurai Residential Landscapes Project
developed a tax incentive system for rural residential
landowners to participate in wetlands restoration. In
2006, a three-pond treatment wetland with connect-
ing channels (over 21 acres of shallow freshwater
habitat) was added at Sea Mist Farms to remove pol-
lutants from 120 acres of adjacent farm runoff, which
improves shallow groundwater infiltration connecting
with the Moro Cojo Slough main channel. Later, a
woodchlp bioreactor treatment system was added to
remove more nitrate from agricultural runoff.

In 2008, West Coast Estuary Initiative funds were used
to restore and enhance 50 acres of wetland and upland
habitat at 12 sites in the watershed to mitigate impacts
on wetland resources and to develop restoration design
plans for sites along the middle Moro Cojo Slough
and other waters for the Greater Monterey County
Integrated Regional Water Management Plan. In 2013, a
California Water Boards grant funded several irrigation
and nutrient management practices treating approxi-
mately 1,000 acres of farmland to reduce nitrogen
levels in runoff, including a multichannel treatment sys-
tem and 18-acre treatment wetland on Pacific Gas and
Electric (PG&E) property and in partnership with the
Resource Conservation District of Monterey County, the
Monterey Bay Marine Sanctuary Foundation, Coastal
Conservation and Research (CCR), Mosquito Abatement
District and Monterey County Water Resources,
landowners, and others. In 2019, the Lower Salinas

Water Quality Improvement Project installed wetland
vegetation and woodchips in three linear treatment
channels to maximize nutrient treatment.

Growers, the Central Coast Wetlands Group at Moss
Landing Marine Labs (CCWG), and their partners have
installed six nutrient treatment systems to treat runoff
(e.g., tailwater, stormwater runoff, surface discharges)
from 1,527 acres of irrigated lands. Growers have used
on-farm management practices and technologies to
manage nutrients and improve water quality.

Over '1,700 acres of wetland and adjacent upland are
held in conservation by governmental, land trust,
utilities, and resource management organizations,
including 518 acres of existing and restored wetland/
estuarine habitat and about 464 acres of estuarine
marsh in private ownership. The TMDL seasonal load
allocations for nitrate, ammonia, total nitrogen, and
orthophosphate are implemented through the Central
Coast Regional Water Quality Control Board (Central
Coast Water Board) regulatory program addressing
NPS pollution from irrigated agricultural land.

Results

Guided by the 1996 Moro Cojo Slough Management
and Enhancement Plan, partners have constructed
wetlands, reduced nutrient loading from runoff, and
transformed barren fields adjacent to the main chan-
nel into fresh and brackish wetland ecosystems. Total
nitrogen concentrations at the 309MOR monitoring
location have dropped below the TMDL allocations
of 1.7 milligrams per liter (mg/L) (dry season: May 1
to Oct. 31) and 8 mg/L (wet season: Nov. 1 to Apr. 30)
(Figure 2). Recently, discharge concentrations from the
bioreactor and wetland are below 1 mg/L, and moni-
toring samples routinely meet nitrate Water Quality
Objectives in the Lower Salinas Valley Nutrient TMDL.

Partners and Funding

Restoration partners include CCWG, CCR, and the
Elkhorn Slough Foundation. Landowners provided
access via conservation easements or fee title pur-
chase. Design and construction projects were funded
by the U.S. Environmental Protection Agency, the
California Water Boards, Coastal Conservancy, Central
Coast Water Board, Ocean Protection Council, Wildlife
Conservation Board, and Moss Landing Power Plant,
and PG&E.

^£D	U.S. Environmental Protection Agency

0**	Office of Water

\	Washington, DC

I

- -	EPA 841-F-24-001D

PROt«-c	March 2024

For additional information contact:

Daniel Ellis

Central Coast Regional Water Quality Control Board
805-549-3889 • Daniel.Ellis@waterboards.ca.gov


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